genome.fa.s7662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007662.1 Hibiscus syriacus cultivar Beakdansim tig00025777_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44165

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9576--9664	33	2.8	32	82	1	115	20	37	28	14	1.92
9711--9843	32	4.2	32	93	1	205	18	36	30	14	1.90
9926--10022	30	3.1	31	66	16	92	13	40	37	9	1.77
9890--10022	62	2.1	63	98	1	259	13	39	36	10	1.79
9775--9999	94	2.4	93	71	12	242	16	37	34	12	1.86
9807--10094	156	1.8	157	90	3	465	15	36	36	12	1.85
10057--10190	32	4.2	32	89	0	187	17	35	30	15	1.92
9650--10307	347	1.9	346	95	0	1183	17	34	34	13	1.89
9952--10338	94	4.1	94	72	9	372	17	34	35	12	1.88
18543--18631	33	2.8	32	82	1	115	20	37	28	14	1.92
18678--18810	32	4.2	32	93	1	205	18	36	30	14	1.90
18894--18991	31	3.1	31	66	13	92	13	39	37	9	1.76
18857--18991	63	2.1	63	98	0	261	13	39	37	10	1.79
18742--18968	95	2.4	94	71	10	244	15	37	34	12	1.85
18774--19063	158	1.8	158	89	4	460	15	35	36	12	1.85
19026--19159	32	4.2	32	89	0	187	17	35	30	15	1.92
18920--19308	95	4.1	95	72	9	369	16	33	36	12	1.87
18617--19277	349	1.9	348	95	0	1196	17	34	34	13	1.88
27505--27592	33	2.7	31	81	6	113	20	36	28	14	1.92
27639--27771	32	4.2	32	93	1	205	18	36	30	14	1.90
27855--27952	31	3.1	31	66	13	92	13	39	37	9	1.76
27818--27952	63	2.1	63	98	0	261	13	39	37	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27703--27929	95	2.4	94	71	10	244	15	37	34	12	1.85
27735--28024	158	1.8	158	89	4	460	15	35	36	12	1.85
27987--28120	32	4.2	32	89	0	187	17	35	30	15	1.92
27579--28238	349	1.9	347	95	0	1185	17	34	35	13	1.88
27881--28269	95	4.1	95	72	9	369	16	33	36	12	1.87
36500--36626	31	4.2	32	86	9	160	18	38	27	14	1.91
36504--36625	30	4.0	30	85	10	151	19	38	27	14	1.91
36499--36625	61	2.1	60	84	10	168	18	38	27	14	1.91
36671--36802	62	2.1	62	95	2	239	13	40	35	10	1.79
36591--36873	153	1.8	154	88	7	441	15	36	35	12	1.85
36733--37111	93	4.1	93	69	22	301	17	34	34	12	1.88
36837--36959	32	3.9	32	87	4	169	19	36	28	15	1.92
36837--36959	63	2.0	63	86	3	176	19	36	28	15	1.92

Tables:   1

The End!