genome.fa.s7665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007665.1 Hibiscus syriacus cultivar Beakdansim tig00026237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50555

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3042--3074	11	3.0	11	90	0	57	15	36	39	9	1.79
3445--3653	32	6.6	32	70	15	121	14	31	36	17	1.90
3574--3653	33	2.5	32	89	4	124	16	30	36	17	1.92
3549--4120	167	3.4	168	91	5	948	16	33	32	17	1.92
3738--3819	33	2.6	32	86	5	112	14	29	35	20	1.93
3738--3821	32	2.6	33	88	3	118	14	29	35	20	1.92
3901--3981	33	2.6	32	84	7	103	17	29	32	20	1.96
12005--12036	11	2.9	11	100	0	64	9	37	43	9	1.69
12426--12489	32	2.0	33	90	3	103	14	31	35	18	1.91
12429--12501	32	2.4	30	84	9	85	16	31	35	16	1.91
12407--12681	128	2.1	132	92	6	459	17	32	34	15	1.91
12554--12638	33	2.6	33	92	1	136	15	29	36	18	1.92
12533--13114	169	3.4	170	94	1	1008	16	32	33	17	1.92
12723--12807	33	2.6	33	86	1	109	15	30	35	18	1.92
12895--12976	33	2.5	33	84	2	103	17	29	34	19	1.94
32034--32065	11	2.9	11	100	0	64	9	37	43	9	1.69
32455--32670	33	6.6	33	76	8	183	16	31	35	16	1.91
32436--32689	131	1.9	132	98	0	492	16	32	35	14	1.90
32755--32839	33	2.6	33	88	1	118	16	30	35	17	1.92
32927--33007	33	2.5	32	84	4	101	17	29	34	18	1.94
32564--33143	169	3.4	170	95	1	1033	16	32	33	16	1.92
41061--41093	11	3.0	11	90	0	57	15	36	39	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41482--41568	33	2.7	33	90	1	131	16	31	35	17	1.92
41553--41581	15	1.9	15	100	0	58	20	24	41	13	1.89
41463--41687	121	1.9	121	99	0	441	15	32	36	16	1.90
41603--41687	33	2.6	33	92	1	136	15	29	36	18	1.92
41771--41855	33	2.6	33	90	1	127	15	29	35	20	1.93
41581--42160	169	3.4	170	96	1	1051	16	32	33	17	1.92
41943--42024	33	2.5	33	88	2	112	17	30	34	18	1.94
50314--50495	91	2.0	93	89	3	278	12	36	35	16	1.86
50459--50555	32	3.0	32	92	0	149	15	29	35	19	1.93

Tables:   1

The End!