Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007669.1 Hibiscus syriacus cultivar Beakdansim tig00026379_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50274
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Found at i:1449 original size:96 final size:95
Alignment explanation
Indices: 1276--1663 Score: 358
Period size: 96 Copynumber: 4.1 Consensus size: 95
1266 GTGCGGGCTG
* ** *
1276 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
1340 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
1370 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACT-CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACC
* *
1435 CGTCGGGGGTTGCCGATGGTGACCGAGACAC
65 CGTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
1466 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
1528 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
1563 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1627 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
1656 CCGCACCC
1 CCGCACCC
1664 GTGGCCTGGG
Statistics
Matches: 220, Mismatches: 61, Indels: 26
0.72 0.20 0.08
Matches are distributed among these distances:
93 25 0.11
94 40 0.18
95 36 0.16
96 86 0.39
97 33 0.15
ACGTcount: A:0.13, C:0.37, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:1461 original size:32 final size:32
Alignment explanation
Indices: 1425--1558 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
1415 CCTGGGGTTG
* * *
1425 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1457 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
1489 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
1521 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
1554 CCGAG
1 CCGAG
1559 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:1651 original size:31 final size:30
Alignment explanation
Indices: 1616--1717 Score: 93
Period size: 31 Copynumber: 3.4 Consensus size: 30
1606 CCTGGGGTTG
1616 CCGAGGCACCCGTCGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTC-GGGTTGCCGATGGTGA
* * ** * *
1647 CCGAGGCCCCCGCACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCG-TCGGGTTGCC-GATGG-TGA
1678 CCGAGGCACCCGTCGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCGGGTTGCCGATGGTGA
1708 CCGAGG-ACCC
1 CCGAGGCACCC
1718 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
29 7 0.13
30 14 0.26
31 29 0.54
32 4 0.07
ACGTcount: A:0.12, C:0.35, G:0.39, T:0.14
Consensus pattern (30 bp):
CCGAGGCACCCGTCGGGTTGCCGATGGTGA
Found at i:1669 original size:62 final size:61
Alignment explanation
Indices: 1593--1724 Score: 246
Period size: 62 Copynumber: 2.1 Consensus size: 61
1583 GTGCGGCACT
*
1593 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGTTGCCGATGGTGACCGAGGAC
1655 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGGAC
1716 CCCGCACCC
1 CCCGCACCC
1725 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
61 32 0.46
62 37 0.54
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (61 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGTTGCCGATGGTGACCGAGGAC
Found at i:1828 original size:32 final size:32
Alignment explanation
Indices: 1769--1900 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
1759 GCCTGGGTTG
* * *
1769 CCGAGCCACCC-TCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1800 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1832 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
1864 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
1896 CCGAG
1 CCGAG
1901 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
31 11 0.12
32 71 0.76
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:2023 original size:33 final size:31
Alignment explanation
Indices: 1947--2034 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 31
1937 CTCACCAATG
1947 GCCTGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGTTGCCGATGGTGACCGAGACACCC
** * *
1978 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGG-GTTGCCGATGGTGACCGA-GACACCC
2011 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGG-TTGCCGATGGTGACCG
2035 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
31 4 0.09
32 17 0.36
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.20
Consensus pattern (31 bp):
GCCTGGGTTGCCGATGGTGACCGAGACACCC
Found at i:10387 original size:32 final size:32
Alignment explanation
Indices: 10351--10484 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
10341 GCCTGGGTTG
* * *
10351 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
10383 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
10415 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
10447 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
10480 CCGAG
1 CCGAG
10485 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:10576 original size:31 final size:32
Alignment explanation
Indices: 10541--10644 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
10531 GCCTGGGTTG
10541 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
10572 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
10603 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
10635 CCGAGG-ACCC
1 CCGAGGCACCC
10645 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:10615 original size:62 final size:62
Alignment explanation
Indices: 10519--10651 Score: 241
Period size: 63 Copynumber: 2.1 Consensus size: 62
10509 GTGCGGCACT
*
10519 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
10580 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
10643 CCCGCACCC
1 CCCGCACCC
10652 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 16 0.23
62 20 0.29
63 33 0.48
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:10679 original size:156 final size:158
Alignment explanation
Indices: 10447--10734 Score: 442
Period size: 156 Copynumber: 1.8 Consensus size: 158
10437 CCAATGGTGA
* * *
10447 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
10512 CGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
10575 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
10603 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
10665 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
10730 CCGAG
128 CCGAG
10735 ACACCCGTCT
Statistics
Matches: 119, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
155 31 0.26
156 45 0.38
157 21 0.18
158 22 0.18
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:10740 original size:32 final size:32
Alignment explanation
Indices: 10698--10830 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
10688 CCTGGGGTTG
* *
10698 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
10730 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
10762 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
10794 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
10826 CCGAG
1 CCGAG
10831 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:10867 original size:346 final size:347
Alignment explanation
Indices: 10234--10891 Score: 1176
Period size: 346 Copynumber: 1.9 Consensus size: 347
10224 GTGCGGCACT
* *
10234 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
* * *
10299 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGT
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGT
10364 CGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
131 CGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
10429 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
196 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
**
10494 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGG
261 CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
10558 GTTGCCGATGGTGACCGAGGCC
326 GTTGCCGATGGTGACCGAGGCC
** *
10580 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
10645 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTGCCGAGCCACCCG
10710 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
130 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
* *
10775 CTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGC
195 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
*
10839 ACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
10892 TGGTGACCGA
Statistics
Matches: 297, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
346 169 0.57
347 128 0.43
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.17
Consensus pattern (347 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGTTGCCGAGCCACCCGT
CGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGGCACCCGTCGGG
GTTGCCGATGGTGACCGAGGCC
Found at i:10954 original size:33 final size:32
Alignment explanation
Indices: 10877--10965 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
10867 CTCACCAATG
*
10877 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
10909 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
10942 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
10966 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:19304 original size:95 final size:95
Alignment explanation
Indices: 19149--19536 Score: 374
Period size: 95 Copynumber: 4.1 Consensus size: 95
19139 TGCGAGGCTG
* ** *
19149 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
19214 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
19244 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
19309 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
19339 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
19401 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
19436 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
19499 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
19529 CCGCACCC
1 CCGCACCC
19537 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 61, Indels: 23
0.72 0.20 0.08
Matches are distributed among these distances:
93 32 0.14
94 13 0.06
95 114 0.52
96 32 0.14
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:19334 original size:32 final size:32
Alignment explanation
Indices: 19298--19431 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
19288 CCTGGGGTTG
* * *
19298 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
19330 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
19362 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
19394 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
19427 CCGAG
1 CCGAG
19432 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:19542 original size:62 final size:62
Alignment explanation
Indices: 19466--19598 Score: 241
Period size: 62 Copynumber: 2.1 Consensus size: 62
19456 GTGCGGCACT
*
19466 CCCGCACCCGTGGCCT-GGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
19528 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
19590 CCCGCACCC
1 CCCGCACCC
19599 AACTCTCGGC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
62 49 0.71
63 20 0.29
ACGTcount: A:0.11, C:0.38, G:0.38, T:0.14
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:19586 original size:31 final size:32
Alignment explanation
Indices: 19488--19591 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
19478 GCCTGGGTTG
*
19488 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
19520 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
19551 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
19582 CCGAGG-ACCC
1 CCGAGGCACCC
19592 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 7 0.13
31 32 0.59
32 15 0.28
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:19703 original size:32 final size:32
Alignment explanation
Indices: 19644--19775 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
19634 CCTGGGGTTG
* *
19644 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
19675 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
19707 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
19739 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
19771 CCGAG
1 CCGAG
19776 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:19711 original size:156 final size:158
Alignment explanation
Indices: 19330--19746 Score: 512
Period size: 156 Copynumber: 2.7 Consensus size: 158
19320 CCGATGGTGA
* * * *
19330 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * *
19395 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGAGG-CACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
19459 CGGCACTCCCGCACCCGTGGCCTGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGTTG
* * * *** * *
19488 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* *
19550 G-CCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
19611 TGTCCGGAACTCCCGCACCCGT-GCCTGGGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTG
*
19644 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* *
19708 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
19747 ACCCGCCTGG
Statistics
Matches: 219, Mismatches: 28, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
155 59 0.27
156 82 0.37
157 37 0.17
158 41 0.19
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (158 bp):
CCGAGACACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGGCACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGTTG
Found at i:19833 original size:345 final size:348
Alignment explanation
Indices: 19180--19836 Score: 1169
Period size: 345 Copynumber: 1.9 Consensus size: 348
19170 GTGCGGCACT
*
19180 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
* * *
19245 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
19310 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
19375 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
196 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
**
19440 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGTTGCCGAGGCACCCGTCGGG
261 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGAGGCACCCGTCGGG
19505 GGTTGCCGATGGTGACCGAGGCC
326 GGTTGCCGATGGTGACCGAGGCC
** *
19528 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGG-GTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
19592 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGT-GCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
19656 TC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
131 TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
* *
19720 CTGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGC
196 CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
*
19784 ACCAACGCTCGGTTCTGTGCGGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
261 ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCT-GGGTTGCCGA
19837 TGGTGACCGA
Statistics
Matches: 296, Mismatches: 12, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
344 65 0.22
345 108 0.36
346 24 0.08
347 62 0.21
348 37 0.12
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (348 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGT
CTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGC
ACCAACGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGCCTGGGTTGCCGAGGCACCCGTCGGG
GGTTGCCGATGGTGACCGAGGCC
Found at i:19899 original size:33 final size:32
Alignment explanation
Indices: 19822--19910 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
19812 CTCACCAATG
*
19822 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
19854 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
19887 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
19911 GGGCTCACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:28260 original size:95 final size:94
Alignment explanation
Indices: 28105--28492 Score: 372
Period size: 95 Copynumber: 4.1 Consensus size: 94
28095 TGCGAGGCTG
* ** *
28105 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
28170 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGAGGCCC
* *
28200 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
28265 GTCGGGGGTTGCCGATGGTGACCGAGACAC
66 GTC-GGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
28295 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* *
28357 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC-C
*
28392 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
28456 GTCGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGTTGCCGATGGTGACCGAGGCCC
28485 CCGCACCC
1 CCGCACCC
28493 GTGGCCTGGG
Statistics
Matches: 221, Mismatches: 60, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
93 25 0.11
94 12 0.05
95 117 0.53
96 37 0.17
97 30 0.14
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (94 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:28290 original size:32 final size:32
Alignment explanation
Indices: 28254--28387 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
28244 CCTGGGGTTG
* * *
28254 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
28286 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
28318 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
28350 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
28383 CCGAG
1 CCGAG
28388 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 64 0.70
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:28480 original size:31 final size:32
Alignment explanation
Indices: 28445--28548 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
28435 CCTGGGGTTG
28445 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
28476 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
*
28507 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
28539 CCGAGG-ACCC
1 CCGAGGCACCC
28549 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 1 0.02
31 36 0.67
32 17 0.31
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:28498 original size:62 final size:63
Alignment explanation
Indices: 28422--28555 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
28412 GTGCGGCACT
*
28422 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
28484 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
28547 CCCGCACCC
1 CCCGCACCC
28556 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 37 0.53
63 33 0.47
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:28583 original size:157 final size:158
Alignment explanation
Indices: 28350--28638 Score: 451
Period size: 157 Copynumber: 1.8 Consensus size: 158
28340 CCAATGGTGA
* * *
28350 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
* *
28415 CGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCG
66 CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
28479 AGGCCCCCGCACCCGTGGCCTGGGGTTG
131 AGGCCCCCGCACCCGTGGCCTGGGGTTG
* * *
28507 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTCT
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCA-CCAACGCTCGGCTCT
28569 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
63 GTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
28634 CCGAG
128 CCGAG
28639 ACACCCGTCT
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
156 31 0.26
157 65 0.54
158 24 0.20
ACGTcount: A:0.12, C:0.37, G:0.36, T:0.16
Consensus pattern (158 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGGTTGCCGATGGTGACCG
AGGCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:28644 original size:32 final size:32
Alignment explanation
Indices: 28602--28734 Score: 196
Period size: 32 Copynumber: 4.2 Consensus size: 32
28592 CCTGGGGTTG
* *
28602 CCGAGCCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
28634 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
*
28666 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
* *
28698 CCGAGGCCACCCGCCT-GGGTTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGGTTGCCGATGGTGA
28730 CCGAG
1 CCGAG
28735 CCTCACGCAC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.01
32 84 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGGTTGCCGATGGTGA
Found at i:28858 original size:33 final size:32
Alignment explanation
Indices: 28781--28869 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
28771 CTCACCAATG
*
28781 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
28813 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
28846 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
28870 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:37214 original size:94 final size:95
Alignment explanation
Indices: 37045--37431 Score: 365
Period size: 94 Copynumber: 4.1 Consensus size: 95
37035 TGCGAGGCTG
* ** *
37045 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCC-CACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
37109 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
* *
37139 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
* *
37204 GTC-GGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
******* * ** ** * *** * * ***
37233 CCGTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGC
1 CCG-CACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-
* * *
37295 CACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTC
61 CACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC-C
*
37330 ACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
37394 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
37424 CCGCACCC
1 CCGCACCC
37432 GTGGCCTGGG
Statistics
Matches: 219, Mismatches: 61, Indels: 25
0.72 0.20 0.08
Matches are distributed among these distances:
94 103 0.47
95 69 0.32
96 24 0.11
97 23 0.11
ACGTcount: A:0.13, C:0.36, G:0.34, T:0.17
Consensus pattern (95 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGGTTGCCGATGGTGACCGAGGCCC
Found at i:37252 original size:32 final size:32
Alignment explanation
Indices: 37193--37325 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
37183 CCTGGGGTTG
* *
37193 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
37224 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
37256 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
37288 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
37321 CCGAG
1 CCGAG
37326 CCTCACGCAC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
31 13 0.14
32 51 0.56
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:37313 original size:65 final size:63
Alignment explanation
Indices: 37193--37325 Score: 185
Period size: 65 Copynumber: 2.1 Consensus size: 63
37183 CCTGGGGTTG
* * * * *
37193 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
* *
37256 CCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGA-GACACCCGCCTGGGATTGCCGATGGTGA
37321 CCGAG
1 CCGAG
37326 CCTCACGCAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 13 0.21
64 18 0.30
65 30 0.49
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (63 bp):
CCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGACACCCGCCTGGGATTGCCGATGGTGA
Found at i:37438 original size:63 final size:62
Alignment explanation
Indices: 37360--37493 Score: 250
Period size: 63 Copynumber: 2.1 Consensus size: 62
37350 GTGCGGCACT
*
37360 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGAC
37423 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
37485 CCCGCACCC
1 CCCGCACCC
37494 AACTCTCGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 33 0.47
63 37 0.53
ACGTcount: A:0.10, C:0.37, G:0.39, T:0.13
Consensus pattern (62 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGAC
Found at i:37452 original size:31 final size:31
Alignment explanation
Indices: 37360--37457 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
37350 GTGCGGCACT
37360 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
**** * * *
37391 CCCGTCGGGGGTTGCC-GATGG-TGACCGAGGCC
1 CCCG-CACCCGTGGCCTG-GGGTTG-CCGAGGCA
37423 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
37454 CCCG
1 CCCG
37458 TCGGGGTTGC
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.09, C:0.38, G:0.40, T:0.13
Consensus pattern (31 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCA
Found at i:37458 original size:190 final size:190
Alignment explanation
Indices: 37117--37482 Score: 510
Period size: 190 Copynumber: 1.9 Consensus size: 190
37107 CCGTCGGGTG
* *
37117 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
*** *
37182 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGC
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
* *
37247 CGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 CGAGGGTGACCGAGACACCCGTC-GGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
*
37308 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
37371 GGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-T
65 GGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTC-CCCGTT
* * *
37434 GGCCTG-GGGTTG-CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGG
128 GGCC-GAGGG-TGACCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGG
37483 ACCCCGCACC
Statistics
Matches: 156, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
189 20 0.13
190 83 0.53
191 53 0.34
ACGTcount: A:0.13, C:0.35, G:0.36, T:0.17
Consensus pattern (190 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGTCCCCGTTGGC
CGAGGGTGACCGAGACACCCGTCGGCGTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:37481 original size:31 final size:32
Alignment explanation
Indices: 37383--37486 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
37373 CCTGGGGTTG
*
37383 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
* *** * *
37415 CCGAGGCCCCCG-CACCCGTGGCCTG-GGGTTG-
1 CCGAGGCACCCGTCAGGGGTTGCC-GATGG-TGA
37446 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
37477 CCGAGG-ACCC
1 CCGAGGCACCC
37487 CGCACCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
30 7 0.13
31 32 0.59
32 15 0.28
ACGTcount: A:0.12, C:0.35, G:0.40, T:0.13
Consensus pattern (32 bp):
CCGAGGCACCCGTCAGGGGTTGCCGATGGTGA
Found at i:37582 original size:32 final size:32
Alignment explanation
Indices: 37546--37670 Score: 189
Period size: 32 Copynumber: 3.9 Consensus size: 32
37536 TTGCCGAGCC
*
37546 CCCGTCGGGGGTTGCCGATGGTGACCGAGACA
1 CCCGTCTGGGGTTGCCGATGGTGACCGAGACA
*
37578 CCCGTCTGGGTTTGCCGATGGTGACCGAGACA
1 CCCGTCTGGGGTTGCCGATGGTGACCGAGACA
* *
37610 CCCGTCTGGGTTTGCCGATGGTGACCGAGGCCA
1 CCCGTCTGGGGTTGCCGATGGTGACCGA-GACA
*
37643 CCCGCCT-GGGTTGCCGATGGTGACCGAG
1 CCCGTCTGGGGTTGCCGATGGTGACCGAG
37671 CCTCACGCAC
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
31 1 0.01
32 77 0.89
33 9 0.10
ACGTcount: A:0.14, C:0.30, G:0.38, T:0.19
Consensus pattern (32 bp):
CCCGTCTGGGGTTGCCGATGGTGACCGAGACA
Found at i:37636 original size:157 final size:159
Alignment explanation
Indices: 37224--37641 Score: 514
Period size: 157 Copynumber: 2.7 Consensus size: 159
37214 CCGATGGTGA
* * * * *
37224 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * *
37289 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
66 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTC
*
37353 CGGCACTCCCGCACCCGTGGCCTGGGGTTG
130 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
* * *** * *
37383 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTT
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-T
* * *
37445 G-CCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGGACC-C-CGCACCCAACTCTCGGCTC
63 GACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCTCACGCA-CCAACGCTCGGCTC
37506 TGTCCGGAACTCCCGCACCCGTGGCCT-GGGTTG
126 TGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTG
*
37539 CCGA-GCCCCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
37603 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
66 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
37642 ACCCGCCTGG
Statistics
Matches: 219, Mismatches: 29, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
155 40 0.18
156 56 0.26
157 69 0.32
158 13 0.06
159 41 0.19
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.17
Consensus pattern (159 bp):
CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCTCACGCACCAACGCTCGGCTCTGTCC
GGAACTCCCGCACCCGTGGCCTGGGGTTG
Found at i:37794 original size:33 final size:32
Alignment explanation
Indices: 37717--37805 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
37707 CTCACCAATG
*
37717 GCCTGGGGTTGCCGATGGTGACCGAGACACCC
1 GCCTGGGATTGCCGATGGTGACCGAGACACCC
** ** *
37749 GTATGGTTTTGCCGATGGTGACCGAGGCCACCC
1 GCCTGGGATTGCCGATGGTGACCGA-GACACCC
37782 GCCTGGGATTGCCGATGGTGACCG
1 GCCTGGGATTGCCGATGGTGACCG
37806 GGCTCACGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 21 0.45
33 26 0.55
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCTGGGATTGCCGATGGTGACCGAGACACCC
Found at i:46103 original size:95 final size:93
Alignment explanation
Indices: 45948--46332 Score: 341
Period size: 95 Copynumber: 4.1 Consensus size: 93
45938 TGCGAGGCTG
* ** *
45948 CCGCACCCAGCGCTCGGTTCTGTGCGGCACTCCCGCACCAATGGACTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
46013 GTCGGGTGTTGCCGATGGTGACCGAGGCCC
66 GTCGGG-GTTGCCGATGGTGACCGA-GCCC
* *
46043 CCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
*
46108 GTCGGGGTTGCCGATGGTGACCGAGACAC
66 GTCGGGGTTGCCGATGGTGACCGAG-CCC
* ******* * ** ** * *** * * ***
46137 CCTCTGGGTTTGC-CGATGGTGACCGAG-ACACCCGTCTGGCTTTGCCAATGG-TGACCGAGGCC
1 CCGCACCCAACGCTCGGTTCTGTGCG-GCACTCCCG-CACCCGTGGCCTGGGGTTG-CCGAGG-C
* *
46199 ACCCGCCTGGGATTGCCGATGGTGACCGAGCCTC
62 ACCCGTC-GGGGTTGCCGATGGTGACCGAGCC-C
*
46233 ACGCA-CCAACGCTCGGTTCTGTGC-GCACTCCCGCACCCGTGGCCTGGGGTTGCCGA-GCACCC
1 CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
46295 GTCGGGGGTTGCCGATGGTGACCGAGGCCC
66 GTC-GGGGTTGCCGATGGTGACCGA-GCCC
46325 CCGCACCC
1 CCGCACCC
46333 GTGGCCTGGG
Statistics
Matches: 218, Mismatches: 60, Indels: 26
0.72 0.20 0.09
Matches are distributed among these distances:
92 32 0.15
93 21 0.10
94 52 0.24
95 83 0.38
96 30 0.14
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (93 bp):
CCGCACCCAACGCTCGGTTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCC
GTCGGGGTTGCCGATGGTGACCGAGCCC
Found at i:46132 original size:31 final size:32
Alignment explanation
Indices: 46097--46228 Score: 178
Period size: 31 Copynumber: 4.2 Consensus size: 32
46087 CCTGGGGTTG
* *
46097 CCGAGGCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
46128 CCGAGACACCC-TCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
46159 CCGAGACACCCGTCTGGCTTTGCCAATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* * *
46191 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
46224 CCGAG
1 CCGAG
46229 CCTCACGCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
30 2 0.02
31 37 0.42
32 23 0.26
33 27 0.30
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:46337 original size:62 final size:63
Alignment explanation
Indices: 46262--46391 Score: 244
Period size: 63 Copynumber: 2.1 Consensus size: 63
46252 TGTGCGCACT
*
46262 CCCGCACCCGTGGCCTGGGGTTGCCGA-GCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
46324 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
1 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
46387 CCCGC
1 CCCGC
46392 CCCAACTCTC
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 27 0.41
63 39 0.59
ACGTcount: A:0.10, C:0.36, G:0.40, T:0.14
Consensus pattern (63 bp):
CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGAC
Found at i:46359 original size:188 final size:189
Alignment explanation
Indices: 46021--46392 Score: 488
Period size: 188 Copynumber: 2.0 Consensus size: 189
46011 CCGTCGGGTG
* *
46021 TTGCCGATGGTGACCGAGGCCCCCGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
1 TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
* *** *
46086 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCC
66 GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGCCCCGTTGGCC
* * * *
46151 GATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGA
131 GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGAC-CCCGCCTGGGA
*
46211 TTGCCGATGGTGACCGA-GCCTCACGCA-CCAACGCTCGGTTCTGTGC-GCACTCCCGCACCCGT
1 TTGCCGATGGTGACCGAGGCC-CACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGT
* *
46273 GGCCTGGGGTTGCCGA-GCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCGCACCCG-TG
65 GGCCTGGGGTTGCCGAGGCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGC-CCCGTTG
* * *
46336 GCCTG-GGGTTG-CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCC
128 GCC-GAGGG-TGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACCCCGCC
46393 CCAACTCTCG
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
187 15 0.09
188 99 0.62
189 24 0.15
190 22 0.14
ACGTcount: A:0.13, C:0.36, G:0.35, T:0.17
Consensus pattern (189 bp):
TTGCCGATGGTGACCGAGGCCCACGCACCCAACGCTCGGCTCTGTGCGGCACTCCCGCACCCGTG
GCCTGGGGTTGCCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGACACCCGCCCCGTTGGCC
GAGGGTGACCGAGACACCCGTCGGGCGTTGCCAATGGTGACCGAGGACCCCGCCTGGGA
Found at i:46441 original size:156 final size:156
Alignment explanation
Indices: 46191--46476 Score: 436
Period size: 156 Copynumber: 1.8 Consensus size: 156
46181 CCAATGGTGA
* * *
46191 CCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGTTCTGTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
*
46256 CGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAG-CACCCGTCGGGGGTTGCCGATGGTGACCGA
66 CGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGA
46320 GGCCCCCGCACCCGTGGCCTGGGGTTG
130 GGCCCCCGCACCCGTGGCCTGGGGTTG
* * * *
46347 CCGAGG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGGACC-C-CGCCCCAACTCTCGGCTCTG
1 CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGA-G-CCTCACGCACCAACGCTCGGCTCTG
46409 TCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACC
64 TCC-GAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACC
46474 GAG
128 GAG
46477 ACACCCGTCT
Statistics
Matches: 118, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
155 46 0.39
156 62 0.53
157 10 0.08
ACGTcount: A:0.12, C:0.37, G:0.35, T:0.16
Consensus pattern (156 bp):
CCGAGGCCACCCGCCGGGGATTGCCGATGGTGACCGAGCCTCACGCACCAACGCTCGGCTCTGTC
CGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCGTCGGGGTTGCCGATGGTGACCGAG
GCCCCCGCACCCGTGGCCTGGGGTTG
Found at i:46500 original size:32 final size:32
Alignment explanation
Indices: 46441--46572 Score: 205
Period size: 32 Copynumber: 4.2 Consensus size: 32
46431 CCTGGGGTTG
* *
46441 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
46472 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
46504 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
1 CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
* *
46536 CCGAGGCCACCCGCCTGGG-TTGCCGATGGTGA
1 CCGA-GACACCCGTCTGGGTTTGCCGATGGTGA
46568 CCGAG
1 CCGAG
46573 CCTCACGCAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
31 14 0.15
32 69 0.73
33 12 0.13
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.18
Consensus pattern (32 bp):
CCGAGACACCCGTCTGGGTTTGCCGATGGTGA
Found at i:46523 original size:156 final size:155
Alignment explanation
Indices: 46128--46543 Score: 495
Period size: 157 Copynumber: 2.7 Consensus size: 155
46118 CCGATGGTGA
* * * *
46128 CCGAGACACCC-TCTGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGCTTTGCCAATGGTGAC
1 CCGAG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
* * * * *
46192 CGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGA-GCCTCACGCACCAACGCTCGGTTCTGTG
65 CGA-GACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC-C-CGCCCCAACGCTCGGCTCTGTC
*
46256 CGCACTCCCGCACCCGTGGCCTGGGGTTG
127 CGAACTCCCGCACCCGTGGCCTGGGGTTG
* * *** * *
46285 CCGAGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGCCCCCG-CACCCG-TGGCCTG-GGGTTG
1 CCGAGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTC-TGGGTTTGCC-GATGG-TG
* * * *
46347 -CCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCCCGCCCCAACTCTCGGCTCTGTC
63 ACCGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGG-CCCCGCCCCAACGCTCGGCTCTGTC
46411 CGGAACTCCCGCACCCGTGGCCTGGGGTTG
127 C-GAACTCCCGCACCCGTGGCCTGGGGTTG
46441 CCGAGCCACCCGTC-GGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
1 CCGAG-CACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGAC
*
46505 CGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGGCC
65 CGAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCC
46544 ACCCGCCTGG
Statistics
Matches: 217, Mismatches: 30, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
155 47 0.22
156 83 0.38
157 87 0.40
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (155 bp):
CCGAGCACCCGTCGGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACC
GAGACACCCGTCTGGGATTGCCGATGGTGACCGAGGCCCCGCCCCAACGCTCGGCTCTGTCCGAA
CTCCCGCACCCGTGGCCTGGGGTTG
Found at i:46607 original size:344 final size:345
Alignment explanation
Indices: 45979--46632 Score: 1168
Period size: 344 Copynumber: 1.9 Consensus size: 345
45969 GTGCGGCACT
* *
45979 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGTGTTGCCGATGGTGACCGAGGCCCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
* * *
46044 CGCACCCAACTCTCGGCTCTGTGCGGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
46109 TCGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
131 TCGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
46174 GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
196 GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
**
46239 CAACGCTCGGTTCTGTGCGCACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCACCCGTCGGGGGT
261 CAACGCTCGGTTCTGTGCGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGCACCCGTCGGGGGT
46304 TGCCGATGGTGACCGAGGCC
326 TGCCGATGGTGACCGAGGCC
** *
46324 CCCGCACCCGTGGCCTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
1 CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
46389 CGC-CCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
66 CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
46453 TCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
131 TCGGGGTTGCCGATGGTGACCGAGACACCC-TCTGGGTTTGCCGATGGTGACCGAGACACCCGTC
* *
46518 TGGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGGG-TTGCCGATGGTGACCGAGCCTCACGCA
195 TGGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCA
*
46582 CCAACGCTCGGTTCTGTGCGCACTCCCTCACCAATGGCCTGGGGTTGCCGA
260 CCAACGCTCGGTTCTGTGCGCACTCCCGCACCAATGGCCTGGGGTTGCCGA
46633 TGGTGACCGA
Statistics
Matches: 295, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
344 163 0.55
345 132 0.45
ACGTcount: A:0.13, C:0.35, G:0.34, T:0.18
Consensus pattern (345 bp):
CCCGCACCAATGGACTGGGGTTGCCGAGGCACCCGTCGGGGGTTGCCGATGGTGACCGAGGACCC
CGCACCCAACTCTCGGCTCTGTCCGGAACTCCCGCACCCGTGGCCTGGGGTTGCCGAGCCACCCG
TCGGGGTTGCCGATGGTGACCGAGACACCCTCTGGGTTTGCCGATGGTGACCGAGACACCCGTCT
GGCTTTGCCAATGGTGACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGCCTCACGCAC
CAACGCTCGGTTCTGTGCGCACTCCCGCACCAATGGCCTGGGGTTGCCGAGCACCCGTCGGGGGT
TGCCGATGGTGACCGAGGCC
Found at i:46668 original size:33 final size:33
Alignment explanation
Indices: 46621--46707 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 33
46611 ACCAATGGCC
* *
46621 TGGGGTTGCCGATGGTGACCGA-GACACCCGTA
1 TGGGATTGCCGATGGTGACCGAGGACACCCGCA
** * *
46653 TGGTTTTTGCCGATGGTGACCGAGGCCACCCGCC
1 TGG-GATTGCCGATGGTGACCGAGGACACCCGCA
46687 TGGGATTGCCGATGGTGACCG
1 TGGGATTGCCGATGGTGACCG
46708 GGGCTCACGC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
32 3 0.07
33 33 0.72
34 10 0.22
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (33 bp):
TGGGATTGCCGATGGTGACCGAGGACACCCGCA
Done.