Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000767.1 Hibiscus syriacus cultivar Beakdansim tig00001491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65329

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4519--4551
16
2.0
17
94
5
59
3
30
0
66
1.06
8720--8897
85
2.1
85
92
0
293
31
19
20
28
1.97
8720--8921
85
2.4
85
88
0
269
30
18
20
30
1.97
11324--11358
17
2.1
17
100
0
70
34
5
17
42
1.73
15488--15517
15
2.0
15
100
0
60
46
13
0
40
1.43
24941--25000
32
1.9
31
89
3
93
35
0
3
61
1.12
29299--29373
28
2.7
28
82
0
96
42
22
8
26
1.81
31780--31858
24
3.3
23
89
5
122
34
21
20
24
1.97
35476--35511
17
2.1
17
94
0
63
22
30
30
16
1.96
36281--36311
12
2.7
12
95
5
55
48
22
9
19
1.78
38165--38207
19
2.3
19
80
11
52
44
0
4
51
1.22
38157--38241
23
3.9
22
70
21
70
45
1
3
49
1.26
38135--38256
33
3.6
35
68
17
105
50
3
3
43
1.35
38507--38555
17
2.9
16
78
6
53
40
2
2
55
1.23
39694--40044
2
176.5
2
67
17
153
48
5
2
43
1.38
39696--39791
43
2.4
41
83
11
112
47
2
5
44
1.37
39694--39959
9
30.9
9
71
22
89
46
3
3
46
1.34
39839--40011
35
5.2
32
68
22
79
48
6
1
43
1.35
39815--40044
11
21.5
11
72
15
135
49
6
1
42
1.36
39985--40024
13
3.2
13
82
13
57
55
10
0
35
1.34
39814--40084
20
12.9
20
69
18
106
48
6
2
42
1.41
41867--41951
2
45.0
2
75
15
83
49
1
1
48
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41956--42036
22
3.6
22
80
5
83
48
8
2
40
1.47
42590--42636
24
2.0
24
84
16
62
76
4
8
10
1.13
42757--42816
31
1.9
31
86
6
86
38
11
8
41
1.72
42787--42856
20
3.4
20
74
14
79
47
10
5
37
1.61
42775--42873
42
2.3
44
89
7
166
47
9
4
39
1.54
42789--42858
22
3.3
22
69
15
74
47
8
5
38
1.58
42801--42875
13
5.5
13
69
9
51
50
8
4
37
1.50
42855--42935
42
1.9
42
87
5
119
45
7
3
43
1.49
42870--42937
22
3.2
22
69
23
72
45
7
4
42
1.52
42870--42935
20
3.2
20
68
16
62
45
7
4
42
1.53
43539--43563
8
3.1
8
100
0
50
36
40
12
12
1.79
43860--43957
46
2.1
46
83
3
126
26
27
5
40
1.77
45840--45882
22
2.0
22
86
9
61
25
4
2
67
1.22
47154--47303
58
2.7
57
88
5
225
44
6
3
46
1.44
47185--47275
29
3.1
29
64
17
71
40
6
3
49
1.45
47266--47319
14
4.2
12
79
13
54
55
1
1
40
1.21
47510--47543
16
2.1
16
88
0
50
50
8
11
29
1.69
54725--54758
13
2.6
13
90
9
52
8
11
0
79
0.94
58504--58533
14
2.1
14
93
0
51
43
0
16
40
1.48
59086--59189
32
3.2
31
76
10
84
16
11
25
46
1.81
59195--59240
22
2.1
22
88
8
67
17
8
17
56
1.65
61458--61501
3
14.7
3
100
0
88
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63489--63636
60
2.5
59
80
7
147
33
12
14
39
1.84
64365--64430
32
2.1
32
100
0
132
18
9
9
63
1.49

Tables:   1

The End!