Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000768.1 Hibiscus syriacus cultivar Beakdansim tig00001493_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101610

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4611--4655
17
2.8
16
80
6
54
64
4
13
17
1.44
19990--20034
21
2.0
24
83
12
60
31
15
22
31
1.95
22921--22971
19
2.7
19
96
0
93
17
21
27
33
1.96
23001--23051
19
2.7
19
85
8
70
25
15
35
23
1.94
22876--23051
83
2.1
83
81
6
196
27
16
26
30
1.97
29507--29546
21
1.9
21
85
10
55
35
10
2
52
1.48
31471--31651
64
2.8
63
84
3
227
27
16
26
29
1.97
31599--31649
19
2.7
19
85
8
70
25
15
35
23
1.94
31493--31700
65
3.2
63
81
12
226
27
16
25
30
1.97
32689--32876
94
2.0
94
97
0
358
34
20
8
36
1.83
40174--40304
23
5.7
23
83
5
149
23
30
25
19
1.98
41859--41906
18
2.6
19
87
6
64
47
20
29
2
1.61
54165--54195
16
1.9
16
100
0
62
25
16
25
32
1.96
58440--58470
16
1.9
16
100
0
62
25
16
25
32
1.96
62711--62741
16
1.9
16
100
0
62
25
16
25
32
1.96
68444--68485
18
2.5
17
84
7
59
52
28
4
14
1.62
68644--68681
17
2.2
17
95
0
67
21
13
15
50
1.78
73199--73233
15
2.2
16
90
5
54
51
0
14
34
1.42
73615--73647
9
3.8
9
88
4
50
27
0
15
57
1.38
80790--80849
23
2.7
22
85
7
77
23
30
26
20
1.98
82436--82474
18
2.2
18
85
0
51
35
30
25
7
1.84
83045--83148
49
2.2
49
93
5
178
39
1
33
25
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83465--83633
75
2.2
76
89
4
250
24
26
26
21
2.00
85031--85354
50
6.5
49
81
5
301
37
17
17
28
1.92
90214--90253
21
1.9
21
84
0
53
57
12
15
15
1.66
92467--92509
23
2.0
21
86
9
59
20
4
20
53
1.63
96420--96474
19
2.9
19
80
0
74
25
21
20
32
1.97
96456--96544
29
3.1
29
78
12
101
21
20
17
40
1.92

Tables:   1

The End!