Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007680.1 Hibiscus syriacus cultivar Beakdansim tig00028275_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13721
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Found at i:214 original size:39 final size:39
Alignment explanation
Indices: 1--13718 Score: 10381
Period size: 39 Copynumber: 358.5 Consensus size: 39
*
1 AAGCGAGATAAAA---TCTGTTTCGAGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
37 AAGCAATATAAAATCTTAAT-TTTCGA-GAAAACTATCTC
1 AAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTC
* *
75 AAGCGAGATAAAATCCTCTATTTCGAGGGAAAC-ATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** *
113 AAGC--GATATAATCTTCAATTTTGAGGGAAAAC-ATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATCTC
** *
150 -AGC-A-A-AAAATCTTCAATTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
185 AAGCGAGATAAAATCTTGTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
224 AAGC--GAT--AATCTTCTATTTTGAGAG-AACAATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
258 AAGCGAGA-CAAATATTATGTTTCGATGGAAACTATCT-
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
295 TAGCGAGATAAAATATTTTGTTTC-AAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
333 AAGCGAGATAAAATCTTC--TTTC-AAGGAAACTATCAC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
369 AAGC--GA-AAAATC-T-TGTTTTGAGGGAAA--ATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
401 AA-CGAGA-AAAATCTT-TTTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
437 AAGCGAGAT-AAATCTTCTATTTCGAGGGAAA--ATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
473 AAGCGAGA-CAAATCTTCT-ATTCGA-GGAAAC--TCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
507 AAGCGAGA-AAAATTCTTCTGTTTCAAGGGAAAC-ATCTC
1 AAGCGAGATAAAA-TCTTCTGTTTCGAGGGAAACTATCTC
*
545 AAGTGAGATAAAA--TTCTGATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
* * * *
583 AAGCGAGATAAAATATTATGTTTCAAGGGAAACAATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
622 AAGAGAGATAAAATCTTTTGTTTCTTA-GGAAACTATCTA
1 AAGCGAGATAAAATCTTCTGTTTC-GAGGGAAACTATCTC
* * *
661 AAGCTAGATAAAATCTTCTGTTTCGAGCGAAATTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * **
700 AAGCGATATAAGATCTTATGTTAGGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
739 AAGCGAGAAAAAATCTTCTATTTCGAGGGAAACTTTCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
778 AAGCGAGATAAAATCTTATGTTTTGAAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
817 AAGCGAGATAAAATCTTCTGTTTTGAGGGAAACAATTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
856 AAGCGAGAAAAAATCTTTTGTTTCGAGGGAAACTACCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
895 AAGCGAGACAAAATCATCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
934 AAGCGATATAAGATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
973 AAGCGAGACAAAATCATCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
1012 AAGCAAGAAAAAATCTTCTGTTTCGAGGGAATCTATCTG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** * * *
1051 AAGCGAGAAAAAAAATTTTGTTTCAAGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
1090 AAGCGACATAAAATCTTATGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
1129 AA-CGCATATAAAATATTTTGTTTCAAGTGAAACTATCTC
1 AAGCG-AGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
1168 AAGCGAGGTAAAATATTTTG-TTCAAGGGAAAATATATC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1206 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1245 AAGCGAGATAAAATCTTCTGTTTC-ATGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
*
1284 TAGCGAGATAAAATCTTCTG-TTC-ATGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
1322 AAGCGAG---AAATCTT-TGTTTCGA-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
1356 AAGCAAGACAAAATCTTCTATTTGGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
1395 AAGCGAGACAAAATTTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
1434 AAGCGAGATAAAA-----TGTTTC-AAGGAAACTATCTA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
1467 AAGCGAGATAAAATATTATGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
1506 AAGCGAGTTAAAATGTAT-TGTTTCGAAGGAAACTTTCTC
1 AAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATCTC
* * * * * * *
1545 AAGCGAGAAAAAAT-TATATGGTTCGCGGTAAAATATCTG
1 AAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATCTC
* * * * *
1584 ATGTGAGATAAATTCTTTTGTTTCGAGGGAAGCTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
1623 AAGAGAGATAAAATCTTCTTTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
1662 AAGCGATATAAAATCTTATGTTTCGAGAG-AACTA--TC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
1698 AAGCGAGATAAAA--TTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
1735 AAGCGAGATAAAATCTTCTGTTCCGAGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
1774 AAGCAATATAAAATCTTAAT-TTTCGAAGGAAA-TGATCTC
1 AAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACT-ATCTC
1813 AAGCGAGATAAAATC-TCTGTTTC-AGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1850 -A---AGATAAAATCTTC--TTT-GAGGGAAAC-ATCT-
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
1880 AAGCGA-A-AAAA---TCT-TTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
1913 AAGCGAGACAAAATCTTCTGTTTAGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
1952 AAGCGAGAAAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
1991 AAGCAAGA-GAAATCTTCTGTTTTGAGGAAAACAATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
2029 AAGCTAGACAAAATCTTATATTTTGAGAGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
2068 AAGCGAGACAAAATCTTCTGTTTCGAGGGAAACTAACTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
2107 TAGCGAGATAAAATATTTTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
2146 AAGCGAGATAAAATCTTCCGTTTCGAGGGAAAATATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
2185 AAGCGAGAAAAAATCTTATTTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
2224 AAGCGAGATAAAATCTTCTATTTCGAGGGAAACTTTCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
2263 AAGCGAGACAAAATCTTCTGTTTCCAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
2302 AAGC-ATGA-AAAA-C-TCTGTTTCGAGGGAAACCATCTC
1 AAGCGA-GATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
2338 AAGCAAGATAAAATCTTCTGATTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
2377 AAGCGAGATAAAACCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* **
2416 AAGCGAGAT-AAATCTCCAT-TTTCGATTGAAACTATCTC
1 AAGCGAGATAAAATCTTC-TGTTTCGAGGGAAACTATCTC
* * *
2454 AAGCGAAATTAAATCTTTTGTTTCGTA-GGAAACTA--TC
1 AAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTC
* * * * *
2491 AAGCGAGATAAAATCTTTTATTTCTAGGGAAACAATTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
2530 AAGCTATATAAGATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** * *
2569 AAGCGAGAAAAAAAATT-TATTTCGAGGGAAAGTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
2607 AAGTGATACAAAATCTTCTGATTCAAGAGAAACTATATC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
2646 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * ** *
2685 AAGCGAGA-AAAAT-TTTTATTTCGAAATCAGACAAATCT-TCTG
1 AAGCGAGATAAAATCTTCTGTTTCG-----AGGGAAA-CTATCTC
*** * ** **** ** *
2727 TTTCAAG-GGAAA-CTATCTAAAGCGAGATAAAATCT-TCTG
1 AAGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCTC
*** ** **** *** *
2766 TTTCGAG--GGAATCTATCTCAAGCGATATAAAATCT-TCTG
1 AAGCGAGATAAAATCT-TCTGTTTCGA-GGGAAA-CTATCTC
*** * * * * ** * *
2805 TTTCGAGAGAAACTATATCAAG---CGAGATAATCT-TCTG
1 AAGCGAGATAAAATCT-TC-TGTTTCGAGGGAAACTATCTC
*** * **** **
2842 TTTCGAGA-GAAA-CTATCTCAAGCGAGATAAAATCTTCTTAAAATCTC
1 AAGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA----C-T---ATCTC
* * *
2889 AAGC-A-ATAAAAATTCTTAAT-TCTCGAGGGAAACGATCTC
1 AAGCGAGAT-AAAA-TCTT-CTGTTTCGAGGGAAACTATCTC
* *
2928 AAGCGAGATAAAATCCTCTGTTTCGA-GGAATCTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
2966 AAGCGATA-AAAGATCTTCAAT-TTTGGTGGAAAAC-ATCTC
1 AAGCGAGATAAA-ATCTTC--TGTTTCGAGGGAAACTATCTC
* * ** * *
3005 ATGCGAGAAAAAATCTTCAATTTCTAGGGAAATTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
3044 AAGCGAGACAAAATCATATGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
3083 AAACGAGAAAAAATCTTCTGTTTCGAGGGAAAATATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
3122 AAGCGAGATAAAATATTTTGTTTCAAGTGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * ** *
3161 AAGCAAGATAAAATCTTATATTTCCTGGGAATCTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
** *
3200 AAGCGAGATAAAATCTTCTGTTTTAACGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
3239 AAGCGAGATAAAATCTTATGTTTCGAGGGAAAGTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
3278 AAGCAAGATAAAATATTATGTTTC-A-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
3315 AAAGC--GA-AAAATCTTCTATTTCGA--G-AACTATCTC
1 -AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
3349 AA--GAGATAAAAT-ATC--TTT-GA---AAAATATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
3379 AAGTGA-AT--AATCTTTTG-TTCGA-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
3413 AAG-GAGATAAAATCATATGTTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
3451 AAGTGAGACAAAATCTTATATTTTGAGAGAAACCATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
3490 AAGCGAGATAAAATCTTTTGTTTC-ATAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
* *
3529 AAGCGAGATAAAATCTTATGTTCCTG-GGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTC-GAGGGAAACTATCTC
* * * * *
3568 AAGCGATATAAGATCTTCTATTTTGAGGGAAACTGTCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
3607 AAGCGAGAAAAAATCTTCTATTTTGAGGGAAACTAGCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
3646 AAGCGAGATAAAATCTTCTGTTTCTAAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
3685 AAGCGAGAAAAAATCTTCTGTTTCGAGGGAAACAATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
3724 AAGCGAGA-AAAATCTTCTGTTTCGAGGGAAAGTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
3762 AAGCGAGA-CAAAT-TTCTGTTTCGAGGGAAACTATCT-
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
3798 AA--GAGACATAATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
3835 AAGCGAGACAAAATCTTCTCTTTC-AAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
3873 AAGTGGGAAAAAATCTTCTGTTTCGACGGAATCTATATG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * **
3912 AAGCGAGA-AAAATATTTTGTTTCGAGAAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
3950 AAGCGACATAAAAACTTCTGTTTCGA-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
3988 AACCAAGA-AACTATCTCAACTAATAAATTTCAAGGGAAACTATCTC
1 AAGCGAGATAA-AATCT----T-CT--GTTTCGAGGGAAACTATCTC
*
4034 AAG-GAG-TAAAATCTTC--TTTC-AAGGAAA-TATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
4067 AAGC-A-AT-AAA-CTTCTGTTTCGAGAGAAA-TATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
4101 AAGC--GATAAAATATTCTGTTTC-ATGGGACACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
* **
4138 AAGCGAGATAAAAACTTCTGTTTCGATTGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
4177 AAGGGAGATAAAATCTTCTGTTACGAGGGAAACTATCTA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
4216 AAGCAAAACAAAATCTTCTATTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
4255 AAGCGAGACAAAATCTTCTATTTCGAGAGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
4294 AAGCGCGATAAAATTTTCTGTTACAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
4333 AAGCGAGATAAAATGTTATGTTTCGAAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
4372 AAGCGAGAAAAAATCTTCTGTTTCGAGGTAAAATATTTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
4411 AAGTGAGATAAATTCTTCTGTTTCGAGGGAAACTATCCC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
4450 AAGCGAGACAAAATCTTCTATTTCGAGGGAAACTTTCCC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
4489 AAGCGAGACAAAATCTTCTGTTTCGAGGGAAACTATCCC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
4528 AAGCGAGACAAAATCTTCTGATTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
4567 AAGCGAGATAAAATCTTCTATTTCGAGGGAAACTGTCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
4606 AAGCGATATAAAATCTTCTATTTCAAGGGAAACTTTCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
4645 AAGCGAGATAAAATCTTCTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
4684 AAGCGAGATAAAATCTTCTGTTCCGA-GGAAAATATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
4722 AA-C-A-ATAAAATCTTAT-TTTC---GGAAAC--TCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
4752 AAGCGAGATAAAATCCT-TATTTCGA--GAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** * *
4788 AAGC--GATATAATCTTCAATTTTG-GTGAAAC-ATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** *
4823 AA--GAGAAAAAATCTTCAATTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
4860 AAGCGAGACAAAATC-TCTGTTTCG-GGGGAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
4897 AA-CGAGAAAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
4935 AAGCGAGATAAAATATTTTGTTTCAAGTGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
4974 AAGCAAGATAAAATCTTATATTTCGTGGGAATCTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
5013 TAGCGAGATAAAATCTTCTGTTTCAAAGGAAACTACCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
5052 AAGCGAGATAAAATCTTCTGTTTTC----GAAA-TATCTC
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
*
5087 -AGC--G--AAAATCTTCTGATTCGAGGGAAACTATC-C
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
5120 AAGCGAGA-CAAATCTT-TGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
5157 AAGCGAGATAAAATCTCCTGTTTCGCGAGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
5196 AAGCGATATAAAATCTTCT-ATTCTGAGAGAAACTATATC
1 AAGCGAGATAAAATCTTCTGTTTC-GAGGGAAACTATCTC
* * * *
5235 AAGCGAAATAAAATCTTCTGTTTTGAGGTAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
5274 AAGCGAGATAAAATCTTCTATTTTGA-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
5312 AAGC-A-ATAAAATC-T-T-TTTCGA--GAAACGATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
5344 AAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATC-C
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
5382 AATCGAGACAAAATCTTCTCTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
5421 AAGCGAG--AAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
5458 AAGCGATATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
5497 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
5536 AAGCGAGATAAAATCTTCTGTTCCGAGGAAAATTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
5575 AAGC-ATAT-AAAT-TT-T-TTTAGAGGG-AACGATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
5608 AAGCGAGA-AAAA---TCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* **
5643 AA--GATAT-AAATCTTC-AATT-G-GGGAAA--ACTCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTA-TCTC
* ** *
5675 AAGCGA-A-AAAA-ATTCAATTT-AAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
5710 AAGCGAGA-CAAATC-TCTATTTC--GGGAAAC-ATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
5744 AAACGAGA-AAAA-ATTCTGTTTCGA--GAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
5779 AAGCGAGATAAAATATTATGTTTC-A-AGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
5816 AAGCAAGATAAAATCTTATATTTCGTGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
5855 AA--GTGATATAATCTTCTATTTCAACGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
5892 AAGCGAGAT-AAATCTTC--TTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
5928 AAGCGAGAT-AAATCTTCTATTTCGA-GGAAATTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
5965 AAGCGAGACAAAATCTTCTGTTTCGA-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
6003 AAGCGA-A-AAAATCTTCT-ATTCGAGGGAATCTATTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * ** *** * *
6039 ATG-GAAAAATCTGAAGCGAGATAAAATCT-TCTGTTTCGAGGGAA--ACTATC
1 AAGCG--AGA--T-AA---A-AT--CTTCTGT-T-TCGAG-GGAAACTA-TCTC
* * * * *
6089 TCA-AGCGATATAAATCTTCTATTTTGAGGGAAACTATCTC
1 -AAGCGAGATA-AAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
6129 AAGCG-GA-AAAA--ATCT-TAT-GAGAGAAACTATATC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
6162 AAGC--GA-AATATCTTCTG-TT-GAGGTAAAC--TCT-
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
** *
6193 -----A-ATAAAATCTTCAATTTCGAGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
6226 AAGC-A-ATATAAATCTTAAT-TTTCGA--GAAACGATCTT
1 AAGCGAGATA-AAATCTT-CTGTTTCGAGGGAAACTATCTC
* *
6262 AAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATCCC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
6301 AATCGAGACAAAATCTTCTGTTTCGAGGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATCTC
6341 AAGCGAG--AAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
6378 AAGC--GATAAAATCTTCTGTTTCGAGGGAAAC-ATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
6414 AAGCGA-A-AAAATCTTCTGTTTCGA-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
6450 AAGCGAGA-CAAATTTTCTGTTTCGAGGGAAAC--TCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
6486 AA---AGAT--AATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
6520 AAGCGAGACAAAATCTTCTCTTTCAAGGGAAACGATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
6559 AAGCGGGAAAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
6598 AAGCGATATAAAATCTTCTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
6637 AAGCGAGATAAAATCTCCTGTTTCGAGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * ** *** ** ** * * *
6676 AACCAAGGGAAACTATC-TCAACTAAGA-TAAAATGTTTTGTTTC
1 AAGCGAGATAAA--ATCTTCTGTTTCGAGGGAAA----CTATCTC
* * * * *
6719 AAG-G-GA-AACTATC-TCAAG---GGAGGTAAAATCT-TCTG
1 AAGCGAGATAA-AATCTTC-TGTTTCGAGG-GAAA-CTATCTC
*** * * * * ** *
6754 TTTCAGGGA-AATATC-TCAAG---CAAGATAAACT-TCTG
1 AAGC-GAGATAAAATCTTC-TGTTTCGAGGGAAACTATCTC
*** * * * ** *
6789 TTTCGAGAGAAACTC-TCAAG---CGAGATAAAATATTCTGTTTC
1 AAGCGAGATAAAATCTTC-TGTTTCGAGGGAAACTA-TC----TC
* * ** * ** *
6830 ATG-G-GACACTATC-TCAAG---CGAGATAAAAACT-TCTG
1 AAGCGAGATAAAATCTTC-TGTTTCGAG--GGAAACTATCTC
*** ** * ***** ** *
6865 TTTCG-CTTGAAA-CTATCTCAAGGGAGATAAAATCT-TCTGT
1 AAGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCT-C
* ** **** * ***
6905 TA-CGAG-GGAAA-CTATCTAAAGCAAAACAAA--ATCTTC
1 AAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATC-TC
*** ** **** ** *
6941 TATTTTGAG-GGAAA-CTATCTCAAGCGAGACAAAATCT-TCTT
1 -A-AGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCTC
*** * * ** ** * *
6982 TTTCGAGAGAAACTATC-TCAAG-CGCGA-TAAAATTTTCTGTTTC
1 AAGCGAGATAAA--ATCTTC-TGTTTCGAGGGAAA----CTATCTC
* * ** * *
7025 AAG-G-GA-AACTATC-TCAAG---CGAGATAAA--ATGTT
1 AAGCGAGATAA-AATCTTC-TGTTTCGAGGGAAACTATCTC
* ** **** ** *
7057 ATGTTTCGA-A-GGAA-CTATCTCAAGCGAGAAAAATCT-TCTG
1 AAG---CGAGATAAAATCT-TCTGTTTCGAGGGAAA-CTATCTC
*** * *** ** *
7097 TTTCGAGGT-AAA-CTT-TAAGT-GA-TAAAATCT-TCTG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAA-CTATCTC
*** ** ***** **
7131 TTTCGAG-GGAAA-CTATCCCAAGCGAGACAAA--ATCTTC
1 AAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATC-TC
** ** ***** ** *
7168 TATTTCGAG-GGAAA-CTATCCCAAGCGAGACAAAATCT-TCTG
1 -A-AGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCTC
*** * ***** ** *
7209 TTTCGAGGT-AAA-CTATCCCAAGCGAGACAAAATCT-TCTG
1 AAGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCTC
** ** **** **
7248 ATTCGAG-GGAAA-CTATCTCAAGCGAGATAAA--ATCTTC
1 AAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATC-TC
** ** **** *** *
7285 TATTTCGAG-GGAAA-CTATCTCAAGCGATATAAAATCT-TCTG
1 -A-AGCGAGATAAAATCT-TCTGTTTCGA-GGGAAA-CTATCTC
*** * ** * **** **
7326 TTTCAAGGGAAACT-TTCTCAAGCGAGATAAAATCT-TCTGTTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAG-GGAAA-CTATC----TC
* * ** *
7369 AAG-G-GA-AACTATC-TCAAG---CGAGATAAAATCT-TCTG
1 AAGCGAGATAA-AATCTTC-TGTTTCGAG-GGAAA-CTATCTC
*** * **** * *** *
7404 TTCCGAG-GAAAAT-TATCTCAAGCAATATAAA--ATCTT
1 AAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATCTC
* * * ** * * *
7440 AATTTTCGAGGA-AACGATC-TCAAG---CGAGATAAAATTGTCTG
1 AA---GCGA-GATAA-AATCTTC-TGTTTCGAG-GGAAACTATCTC
*** * * * * **
7481 TTTCGAGAGAAAAT-ATC----TCAAGCGATATAAGATCTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGA-A-ACTATC-TC
**** * ** * * * * * **
7518 AATTTTGGTGGAA-C-AC-ATCTCAAGCAAGAAAAAATCTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAG--GGAAACTATC-TC
* * ** **** ** * *
7557 AATTTCAAG-GGAAA-CTATCTCAAGCGAGACAAAATCATCTG
1 AA--GCGAGATAAAATCT-TCTGTTTCGAGGGAAACT-ATCTC
*** *** **** *** *
7598 TTTCG-GGGGAAA-CTATCTCAAACGATAAAAAATCT-TCTG
1 AAGCGAGATAAAATCT-TCTGTTTCGA-GGGAAA-CTATCTC
*** ** **** ***
7637 TTTCGAG-GGAAA-CTATCTCAAGC-AATAAAATCTTATTTCGTGAATC
1 AAGCGAGATAAAATCT-TCTGTTTCGAGGGAAA-C-TA--TC-----TC
* *
7683 TATCTCAGCGAGAT-AAA-CTTCTGTTTC-AAGGAAACTACCTC
1 -A----AGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
7724 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAA-TATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
7762 AAGCGATAT-AAATCTTC--TTTCGAGGGAAACTATC-C
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
7797 AAGCGAGACAAAATCTTTTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
7836 AAGCGAGATAAAATCTCCTGTTTCGAGAGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
7875 AAGCGATATAAAATCTTCTATTAT-GAGAGAAACTATATC
1 AAGCGAGATAAAATCTTCTGTT-TCGAGGGAAACTATCTC
* *
7914 AAGCGAAATAAAATCTTCTGTTT-GA-GGAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
7951 AAGCGAGAT-AAATCTTCTATTTCGA-GGAAACTA--TC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * ** *
7986 AAGCAATATAAAATCTTAAT-TTTCGACAGAAACGATCTC
1 AAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTC
* *
8025 AAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATCCC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
8064 AATCGAGACAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
8103 AAGCGAGACAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
8142 AAGCGATATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
8181 AAGCGATATAAAATCTTCTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
8220 AAGCGAGATAAAATCTTCTGTTACGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
8259 AAGCGAGATAAAATCTT-TTTTTCCGAGGAAAATTATCTC
1 AAGCGAGATAAAATCTTCTGTTT-CGAGGGAAACTATCTC
* * * * *
8298 AAGCAATATAAAATCTT-TATTTTAGAGGGAAACGATCTC
1 AAGCGAGATAAAATCTTCT-GTTTCGAGGGAAACTATCTC
*
8337 AAGCGAGATAAAATCCTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * ** * *
8376 AAGCGATATAAGATCTTCAATTTTG-GTGGAAA-AATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAG-GGAAACTATCTC
* * * ** *
8414 AAGCAAGAAAAAATATTCAATTT-AAGGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
* *
8453 AAGCGAGACAAAATCATCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * **
8492 AAACGAGAAAAAATCTTCTGTTTCGATTGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
8531 AAGCGAGATAAAATATTTTGTTTCAAGTGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
8570 AAGCAAGATAAAATCTTATATTTCGTGGGAATCTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
8609 AAGTGAGATAAAATCTTCTATTTCAACGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
8648 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAAGTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** *
8687 AAGCGATATAAAATCTTCTAATTCGAGGGAAACTATCCC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
8726 AAGCGA-ATCAAAATCTTTTGTTTCAAGGGAAACTATCTC
1 AAGCGAGAT-AAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** *
8765 AAGCAAGATAAAATCTAATGTTTCGAGGGAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
8804 AAGCGATATAAAATCTTCTATTTTGAGAGAAACTATATC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
8843 AAGCAAAATAAAATCTTCTGTTTTGAGGTAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
8882 AAGCGAGATAAAATCTTCTATTTCGAGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * ** *
8921 AAGCAATATAAAATCTTAAT-TTTCGACAGAAACGATCTC
1 AAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTC
* * *
8960 AAGCGAGATAAAATCTTCTGTTTCAAAGGAAACTATCCC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
8999 AAGTGAGACAAAATCTTCTGCTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
9038 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACAATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * ***
9077 AAGCAAGATAAAATATTTTGTTTCAATTAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
9116 AAGCAAGATAAAATCTTCTGTTTCGTGGGTATCTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
9155 AAGCGAGATAAAATCTTCTGTTTCTAGGGAAACTATCAC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
9194 AAGCTAGATAAAATCTTCTGTTTTGGAGGGAAAGTATCTC
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
* ** *
9234 AAGCAAGATAAAAAATTCTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
9273 AAGCCATATAAAATCTTCTATTTCGAAGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
9312 AAGCGAGATAAAATCTTCTGTTTCTAAGGAAACTATCTA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
9351 AAGCGGGAAAAAATCTTCTGTTTCGAGGGAAAGTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
9390 AAGCGAGACAAAATTTTTTGTTTCGAGGGAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** * *
9429 AAGAGAGGCATAATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
9468 AAGCGAGACAAAATCTTCTGTTTTC-AGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
*
9507 AAGCGAGA-AAAATTCTTCTGTTTCGAGGGAAACGATCTC
1 AAGCGAGATAAAA-TCTTCTGTTTCGAGGGAAACTATCTC
* ** * * * *
9546 AAGCAAGGCAAAATCTTCAGATTT-AAGAGAAACTATCTG
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
*
9585 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCAC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
9624 AAGCGAGACAAAATCTTCTATTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
9663 AAGCGAGATAAAATCTTTTGTTTCGTA-TGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTC
9702 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
9741 AAGCGATATAAAATCTTCTGTTTCGAGAGAAACTATATC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
9780 AAGCGAGATAAAATCTTCTGTTTCAAGGGAAACGATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
9819 AAGCGAGATAAAATCCTATGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
9858 AAGCGATATAAGATCTTCAAT-TTTTGTGGAAAAC-ATCTC
1 AAGCGAGATAAAATCTTC--TGTTTCGAGGGAAACTATCTC
* * ** *
9897 AAGCAAGAAAAAAATCTTCAATTTCAAGGGAAACTATCTC
1 AAGCGAG-ATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
9937 AAGCGAGACAAAATCATCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
9976 AAGCGAGATAAAATATTTTGTTTCAAGTGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
10015 AAGCAAGATAAAATCTTATGTTTCGTGGGAATCTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
10054 AAGCGAGATAAAATCTTCTGTTTCAACGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
10093 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAAGTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
10132 AAGCAAGATAAAATATTCAGTTTCAAGGGAAACTATTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
10171 AACCG-GTAAAAAATATTCTATTTCGAGAGAAACTATCTC
1 AAGCGAG-ATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
10210 AATCGAGATAAAATATTCAGTTTC-ATTGGAAAATATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
* * * *
10249 AAGCGAGATAAAATCTTTTGTTTCGATGGATACTATCTTA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC-TC
* * *
10289 AAG-GAGATAAAATCATATGTTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
10327 AAGTGAGACAAAATCTTCTATTTTGAGAGAAA-TCATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACT-ATCTC
* ** *
10366 AAGCGAGACAAAATCTTCTGTTTCGAGTAAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
10405 TAGCGAGATAAAATATTTTCTTTCAAGAGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
10444 GAGCGAGATAAAATCTTCTTTTTCGAGGGAAAATATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
10483 AAGCGAGAAAAAATCTTTTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
10522 AA-CAAAATAAAATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
10560 AAGCGAGACAAAATCTTCTGTTTTC-AGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
*
10599 AAGCGAGA-AAAATTCTTCTGTTTCGAGGGAAACGATCTC
1 AAGCGAGATAAAA-TCTTCTGTTTCGAGGGAAACTATCTC
* ** * * *
10638 AAGCAAGGCAAAATCTTCAGTTT--AGAGAAACTATCTG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
10675 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCAC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
10714 AAGCGAGACAAAATCTTCTATTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
10753 AAGCGAGATAAAATCTTTTGTTTCGTA-TGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTC
*
10792 AAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
10831 AAGCGATATAAGATCTTCTATTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
10870 AAGCGAGAAAAAATCTTCTATTTCGAGTGAAATTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
10909 AAGCGAGATAAAATCTTATGTTTCGAAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
10948 AAGCGAGAAAAAATCTTCTGTTTCGAGTGAAACAATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
10987 AAGAGAGAGAAAATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
11026 AAGCGAGACAAAATCTTCTTTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
11065 AAGCGAGAAAAAATCTTCTGTTTC-ATGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
* * * *
11104 AAGCGAGAAAAAATCTTTTGTTTCGAGGGAATCTATCTG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
11143 AAGCGAGA-AATAATTTTCTGTTTCGAGGAAAACTATCTC
1 AAGCGAGATAA-AATCTTCTGTTTCGAGGGAAACTATCTC
* * *
11182 AAGCGACATAAAATCTTCTGTTTCAAGGGAAACTATCTG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
11221 AACCGAGATAAAATATTTTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
11260 TAGCGAGGTAAAATCTTCTGTTTCAAGGGTAAA-TATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATCTC
*
11299 AAGCGAG-GAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
11337 AGGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
11376 AAGTGATATAAGATCTTCTATTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
11415 AAGCGAGAAAAAATCTTCTATTTCGATGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
11454 AAGCGAGATAAAATCTTATATTTTGAAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
11493 AAGCGAGAT-AAATATTCT-TTTC-ATTGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
11530 AAGC--GAT-AAATCTT-TGTTTCGA-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
11564 AA-AGAGAT-AAATCTACTGTTTTGAGGGAAACTATATC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
11601 AAGC-ACGACAAAATCTTCTATTTTGAGAGAAACCATCTC
1 AAGCGA-GATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
11640 AAGCGAGACAAAATCTTTTATTTCGAGTGAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
11679 TAGCGAGATAAAATATTTTATTTC-AGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
11717 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAAATATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
11756 AAGCGAGAAAAAATCTT-TGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
11794 AAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
11833 AAGCGAGACAAAATCTTTTGTTTTC-AGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
*
11872 AAGCGAGA-AAAACTCTTCTGTTTCGAGGGAAACGATCTC
1 AAGCGAGATAAAA-TCTTCTGTTTCGAGGGAAACTATCTC
* * *
11911 AAGCGAGACAAAATCTTCAGATTT-GAGTGAAACTATCTC
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
* * * *
11950 AAGCAAGAGAAAATCTTCTATTTCGAGGGAAACTATCAC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
11989 AAGCGAGACAAAATCTTCTATTTGGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
12028 AAGTGAGATAAAATCTTTTGTTTCGTA-TGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTC
*
12067 AAGCGAGATAAAATATTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
12106 AATCAATATAAGATCTTCTATTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
12145 AAGCGAGA-AATAATCTTCTATTTCGAGGGAAACTATATC
1 AAGCGAGATAA-AATCTTCTGTTTCGAGGGAAACTATCTC
* * *
12184 AAGCGAGATAAAATCTTATGTTTTGAAGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
12223 AAGCGATAAAAAATCTTCTGTTTCGAGTGAAACAATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
12262 AAACGAGAAAAAATCTTCTGTTTCGAGGGCAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
12301 AAGCGAGATAAAATCTTCTATTTCGAGGGCAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** *
12340 AAGCGAGATAAAATCTTCTGCTTCGATAGAAACTATCTA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
12379 AAGCGAGAAAAAATCCTCTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
12418 AAGCGAGAAAAAAACCTCTGTTTCGAGGGAATCTATCTG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** *
12457 AAGCGAGA-AATAATTTTCTGTTTC-TTGGAAATCTATCGC
1 AAGCGAGATAA-AATCTTCTGTTTCGAGGGAAA-CTATCTC
* *
12496 AAGCGACATAAAATCTTCTGTTTCGAGGGAAACTATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
12535 AACCGAGATAAAATATTTTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
12574 AAGCGAGGTAAAATCTTCTGTTTCTATGGTAAA-TATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
12613 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
12652 AAGCGAGATAAAATCTTTTGTTTCGTA-GGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTC
*
12691 AAGCGAGATAAAATATTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
12730 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
12769 AAGCGATATAAGATCTTCTATTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
12808 AAGCGAGAAAAAATCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
12847 AAGCGAGATAAAATCTTATGTTTTGAAGGAGACTAACTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
12886 AAGCGAGAAAAAATCTTCTGTTTCGAGTGAAACAATTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
** * * *
12925 AAAAGAGAAAAAACCTTCTATTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
12964 AAGCGATACAAAATCTTCTGTTTCGAGGTAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
13003 AAGCGAGAAAAAATCTTCTGTTTCGAGGTAAAATATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
13042 AAGTGAGATAAATTCTTCTGTTTCGAGGGAAACTATCAC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
13081 AAGCGAGA-AAAATTTTCTGTTTTGAGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
13119 AAGCGACATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
13158 AACCGAGATAAAATCATCTATTTCGAGGGAAACTATATC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
13197 AAGCGATATAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
13236 AAGTGAGATAAAATCTTCTGTTTTGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
13275 AAGCGAGATAAAATCTTCTATTCCGAGGAAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
13314 AAGCAATATAAAATCTTAAT-TTTCGAGGGAAACGATCTC
1 AAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTC
* * * *
13353 TACCGAGATAAAATCCTATGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * ** * *
13392 AAGCGATATAAGATCTTCAATTTTGAGGGAAAAC-ATCTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATCTC
** * *
13431 AAGCGAGA-AGAAATCTTCAATTTCAAGGGAAACTTTCTC
1 AAGCGAGATA-AAATCTTCTGTTTCGAGGGAAACTATCTC
*
13470 AAGCGAGAAAAAATCTTCTGTTTCGAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
13509 AAGCTATATAAAATAATT-AGTTTCAAGTGAAACTATCTC
1 AAGCGAGATAAAAT-CTTCTGTTTCGAGGGAAACTATCTC
* * * * *
13548 AAGCAAGATAAATTCTTATGTTTCGTGGGAATCTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
13587 AAGCGAGATAAAATCTTCTGTTTCAAGGGAAACTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
13626 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAAGTATCTC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
13665 ATA---A-ATAAAATATTCTGTTTCAAGGCAAACTATCTC
1 A-AGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
13701 AAGCGATAT-AAATCTTCT
1 AAGCGAGATAAAATCTTCT
13719 ATT
Statistics
Matches: 11226, Mismatches: 1848, Indels: 1214
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.00
28 8 0.00
29 10 0.00
30 41 0.00
31 27 0.00
32 99 0.01
33 157 0.01
34 303 0.03
35 290 0.03
36 496 0.04
37 654 0.06
38 1048 0.09
39 7634 0.68
40 246 0.02
41 60 0.01
42 35 0.00
43 25 0.00
44 5 0.00
45 11 0.00
46 20 0.00
47 12 0.00
48 10 0.00
49 7 0.00
50 14 0.00
51 13 0.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (39 bp):
AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
Found at i:705 original size:117 final size:117
Alignment explanation
Indices: 1--13718 Score: 13605
Period size: 117 Copynumber: 119.5 Consensus size: 117
* * * *
1 AAGCGAGATAAAA---TCTGTTTCGAGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
* * *
62 A-GAAAACTATCTCAAGCGAGATAAAATCCTCTATTTCGAGGGAAAC-ATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** * ** *
113 AAGC--GATATAATCTTCAATTTTGAGGGAAAAC-ATCTC-AGC-A-A-AAAATCTTCAATTTCA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*
171 AGGGAAACTATCTCAAGCGAGATAAAATCTTGTGTTTCGAGGGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
224 AAGC--GAT--AATCTTCTATTTTGAGAG-AACAATCTCAAGCGAGA-CAAATATTATGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
283 TGGAAACTATCT-TAGCGAGATAAAATATTTTGTTTC-AAGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
333 AAGCGAGATAAAATCTTC--TTTC-AAGGAAACTATCACAAGC--GA-AAAATC-T-TGTTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
390 GGGAAA--ATCTCAA-CGAGA-AAAATCTT-TTTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
437 AAGCGAGAT-AAATCTTCTATTTCGAGGGAAA--ATCTCAAGCGAGA-CAAATCTTCT-ATTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
*
497 -GGAAAC--TCTCAAGCGAGA-AAAATTCTTCTGTTTCAAGGGAAAC-ATCTC
66 GGGAAACTATCTCAAGCGAGATAAAA-TCTTCTGTTTCGAGGGAAACTATCTC
* * * *
545 AAGTGAGATAAAA--TTCTGATTTCGAGGGAAACTATCTCAAGCGAGATAAAATATTATGTTTCA
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
608 AGGGAAACAATCTCAAGAGAGATAAAATCTTTTGTTTCTTA-GGAAACTATCTA
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-GAGGGAAACTATCTC
* * * * * * **
661 AAGCTAGATAAAATCTTCTGTTTCGAGCGAAATTATCTCAAGCGATATAAGATCTTATGTTAGGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
726 GGGAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCGAGGGAAACTTTCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
778 AAGCGAGATAAAATCTTATGTTTTGAAGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
843 GGGAAACAATTTCAAGCGAGAAAAAATCTTTTGTTTCGAGGGAAACTACCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
895 AAGCGAGACAAAATCATCTGTTTCGAGGGAAACTATCTCAAGCGATATAAGATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
960 GGGAAACTATCTCAAGCGAGACAAAATCATCTGTTTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * ** * *
1012 AAGCAAGAAAAAATCTTCTGTTTCGAGGGAATCTATCTGAAGCGAGAAAAAAAATTTTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
1077 GGAAAACTATCTCAAGCGACATAAAATCTTATGTTTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * * * *
1129 AA-CGCATATAAAATATTTTGTTTCAAGTGAAACTATCTCAAGCGAGGTAAAATATTTTG-TTCA
1 AAGCG-AGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* *
1192 AGGGAAAATATATCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
1245 AAGCGAGATAAAATCTTCTGTTTC-ATGGGAAACTATCTCTAGCGAGATAAAATCTTCTG-TTC-
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
1307 ATGGGAAACTATCTCAAGCGAG---AAATCTT-TGTTTCGA-GGAAACTATCTC
65 A-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
1356 AAGCAAGACAAAATCTTCTATTTGGAGGGAAACTATCTCAAGCGAGACAAAATTTTCTATTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
1421 GGGAAACTATCTCAAGCGAGATAAAA-----TGTTTC-AAGGAAACTATCTA
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
1467 AAGCGAGATAAAATATTATGTTTCAAGGGAAACTATCTCAAGCGAGTTAAAATGTAT-TGTTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCT-TCTGTTTCG
* * * * * * * * *
1531 AAGGAAACTTTCTCAAGCGAGAAAAAAT-TATATGGTTCGCGGTAAAATATCTG
65 AGGGAAACTATCTCAAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATCTC
* * * * * * *
1584 ATGTGAGATAAATTCTTTTGTTTCGAGGGAAGCTATCTCAAGAGAGATAAAATCTTCTTTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
1649 GGGAAACTATCTCAAGCGATATAAAATCTTATGTTTCGAGAG-AACTA--TC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
1698 AAGCGAGATAAAA--TTCTATTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTCCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
1761 GGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCGAAGGAAA-TGATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACT-ATCTC
1813 AAGCGAGATAAAATC-TCTGTTTC-AGGGAAACTATCTC-A---AGATAAAATCTTC--TTT-GA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
*
1869 GGGAAAC-ATCT-AAGCGA-A-AAAA---TCT-TTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
1913 AAGCGAGACAAAATCTTCTGTTTAGAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * * *
1978 GGGAAACTATCTCAAGCAAGA-GAAATCTTCTGTTTTGAGGAAAACAATCTT
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
2029 AAGCTAGACAAAATCTTATATTTTGAGAGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* ** * * *
2094 GGGAAACTAACTTTAGCGAGATAAAATATTTTGTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
2146 AAGCGAGATAAAATCTTCCGTTTCGAGGGAAAATATCTCAAGCGAGAAAAAATCTTATTTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
2211 GGGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGGGAAACTTTCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
2263 AAGCGAGACAAAATCTTCTGTTTCCAGGGAAACTATCTCAAGC-ATGA-AAAA-C-TCTGTTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCG
* * *
2324 AGGGAAACCATCTCAAGCAAGATAAAATCTTCTGATTCGAGGGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
2377 AAGCGAGATAAAACCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGAT-AAATCTCCAT-TTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC-TGTTTCG
** * * *
2440 ATTGAAACTATCTCAAGCGAAATTAAATCTTTTGTTTCGTA-GGAAACTA--TC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTC
* * * * * * * * *
2491 AAGCGAGATAAAATCTTTTATTTCTAGGGAAACAATTTCAAGCTATATAAGATCTTCTATTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* ** * *
2556 GGGAAACTATCTCAAGCGAGAAAAAAAATT-TATTTCGAGGGAAAGTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
2607 AAGTGATACAAAATCTTCTGATTCAAGAGAAACTATATCAAGCGAGATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * ** *
2672 GGGAAACTATCTCAAGCGAGA-AAAAT-TTTTATTTCGAAATCAGACAAATCT-TCTG
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-----AGGGAAA-CTATCTC
*** * ** **** ** **** ** ***
2727 TTTCAAG-GGAAA-CTATCTAAAGCGAGATAAAATCT-TCTGTTTCGAG--GGAATCTATCTCAA
1 AAGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA-CTATCTCAAGCGAGATAAAATCT-TCTGTT
* *** **** * * * * ** * *
2787 GCGATATAAAATCT-TCTGTTTCGAGAGAAACTATATCAAG---CGAGATAATCT-TCTG
62 TCGA-GGGAAA-CTATCTCAAGCGAGATAAAATCT-TC-TGTTTCGAGGGAAACTATCTC
*** * **** **
2842 TTTCGAGA-GAAA-CTATCTCAAGCGAGATAAAATCTTCTTAAAATCTCAAGC-A-ATAAAAATT
1 AAGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA----C-T---ATCTCAAGCGAGAT-AAAA-T
* * * * *
2903 CTTAAT-TCTCGAGGGAAACGATCTCAAGCGAGATAAAATCCTCTGTTTCGA-GGAATCTATCTC
54 CTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * **
2966 AAGCGATA-AAAGATCTTCAAT-TTTGGTGGAAAAC-ATCTCATGCGAGAAAAAATCTTCAATTT
1 AAGCGAGATAAA-ATCTTC--TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT
* * * * *
3028 CTAGGGAAATTATCTCAAGCGAGACAAAATCATATGTTTCGAGGGAAACTATCTC
63 CGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
3083 AAACGAGAAAAAATCTTCTGTTTCGAGGGAAAATATCTCAAGCGAGATAAAATATTTTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * ** *
3148 GTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCCTGGGAATCTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
** * *
3200 AAGCGAGATAAAATCTTCTGTTTTAACGGAAACTATCTCAAGCGAGATAAAATCTTATGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
3265 GGGAAAGTATCTCAAGCAAGATAAAATATTATGTTTC-A-GGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
3315 AAAGC--GA-AAAATCTTCTATTTCGA--G-AACTATCTCAA--GAGATAAAAT-ATC--TTT-G
1 -AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * *
3368 A---AAAATATCTCAAGTGA-AT--AATCTTTTG-TTCGA-GGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * * *
3413 AAG-GAGATAAAATCATATGTTTTGAGGGAAACTATCTCAAGTGAGACAAAATCTTATATTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
3477 GAGAAACCATCTCAAGCGAGATAAAATCTTTTGTTTC-ATAGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
* * * * * *
3529 AAGCGAGATAAAATCTTATGTTCCTG-GGGAAACTATCTCAAGCGATATAAGATCTTCTATTTTG
1 AAGCGAGATAAAATCTTCTGTTTC-GAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * *
3593 AGGGAAACTGTCTCAAGCGAGAAAAAATCTTCTATTTTGAGGGAAACTAGCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
3646 AAGCGAGATAAAATCTTCTGTTTCTAAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
3711 GGGAAACAATCTCAAGCGAGA-AAAATCTTCTGTTTCGAGGGAAAGTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
3762 AAGCGAGA-CAAAT-TTCTGTTTCGAGGGAAACTATCT-AA--GAGACATAATCTTCTATTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
3822 GGGAAACTATCTCAAGCGAGACAAAATCTTCTCTTTC-AAGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * * * *
3873 AAGTGGGAAAAAATCTTCTGTTTCGACGGAATCTATATGAAGCGAGA-AAAATATTTTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
** * *
3937 GAAAAACTATCTCAAGCGACATAAAAACTTCTGTTTCGA-GGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
3988 AACCAAGA-AACTATCTCAACTAATAAATTTCAAGGGAAACTATCTCAAG-GAG-TAAAATCTTC
1 AAGCGAGATAA-AATCT----T-CT--GTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
4050 --TTTC-AAGGAAA-TATCTCAAGC-A-AT-AAA-CTTCTGTTTCGAGAGAAA-TATCTC
58 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
4101 AAGC--GATAAAATATTCTGTTTC-ATGGGACACTATCTCAAGCGAGATAAAAACTTCTGTTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
** * * *
4163 ATTGAAACTATCTCAAGGGAGATAAAATCTTCTGTTACGAGGGAAACTATCTA
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
4216 AAGCAAAACAAAATCTTCTATTTTGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTATTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
4281 GAGAAACTATCTCAAGCGCGATAAAATTTTCTGTTACAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
4333 AAGCGAGATAAAATGTTATGTTTCGAAGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * * * *
4398 GGTAAAATATTTTAAGTGAGATAAATTCTTCTGTTTCGAGGGAAACTATCCC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
4450 AAGCGAGACAAAATCTTCTATTTCGAGGGAAACTTTCCCAAGCGAGACAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
4515 GGGAAACTATCCCAAGCGAGACAAAATCTTCTGATTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
4567 AAGCGAGATAAAATCTTCTATTTCGAGGGAAACTGTCTCAAGCGATATAAAATCTTCTATTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
4632 GGGAAACTTTCTCAAGCGAGATAAAATCTTCTGTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
4684 AAGCGAGATAAAATCTTCTGTTCCGA-GGAAAATATCTCAA-C-A-ATAAAATCTTAT-TTTC--
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
4742 -GGAAAC--TCTCAAGCGAGATAAAATCCT-TATTTCGA--GAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** * * * ** *
4788 AAGC--GATATAATCTTCAATTTTG-GTGAAAC-ATCTCAA--GAGAAAAAATCTTCAATTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
4847 GGGAAACTATCTCAAGCGAGACAAAATC-TCTGTTTCG-GGGGAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
4897 AA-CGAGAAAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATATTTTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * * *
4961 GTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCGTGGGAATCTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
5013 TAGCGAGATAAAATCTTCTGTTTCAAAGGAAACTACCTCAAGCGAGATAAAATCTTCTGTTTTC-
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCG
*
5077 ---GAAA-TATCTC-AGC--G--AAAATCTTCTGATTCGAGGGAAACTATC-C
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
5120 AAGCGAGA-CAAATCTT-TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGC
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
5183 GAGAAACTATCTCAAGCGATATAAAATCTTCT-ATTCTGAGAGAAACTATATC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC-GAGGGAAACTATCTC
* * * * * *
5235 AAGCGAAATAAAATCTTCTGTTTTGAGGTAAACTATCTTAAGCGAGATAAAATCTTCTATTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
*
5300 -GGAAACTATCTCAAGC-A-ATAAAATC-T-T-TTTCGA--GAAACGATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
5344 AAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATC-CAATCGAGACAAAATCTTCTCTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
5408 GGGAAACTATCTCAAGCGAG--AAAATCTTCTGTTTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
5458 AAGCGATATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
5523 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTCCGAGGAAAATTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
5575 AAGC-ATAT-AAAT-TT-T-TTTAGAGGG-AACGATCTCAAGCGAGA-AAAA---TCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* **
5630 GGGAAACTATCTCAA--GATAT-AAATCTTC-AATT-G-GGGAAA--ACTCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTA-TCTC
* ** * * *
5675 AAGCGA-A-AAAA-ATTCAATTT-AAGGGAAACTATCTCAAGCGAGA-CAAATC-TCTATTTC--
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
5732 GGGAAAC-ATCTCAAACGAGA-AAAA-ATTCTGTTTCGA--GAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
5779 AAGCGAGATAAAATATTATGTTTC-A-AGAAACTATCTCAAGCAAGATAAAATCTTATATTTCGT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
5842 GGGAAACTATCTCAA--GTGATATAATCTTCTATTTCAACGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
5892 AAGCGAGAT-AAATCTTC--TTTCGAGGGAAACTATCTCAAGCGAGAT-AAATCTTCTATTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
5953 -GGAAATTATCTCAAGCGAGACAAAATCTTCTGTTTCGA-GGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
6003 AAGCGA-A-AAAATCTTCT-ATTCGAGGGAATCTATTTCATGGAAAAATCTGAAGCGAGATAAAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAA---A---C-T------ATCTCAAGCGAGATAAAA
* * *
6065 TCTTCTGTTTCGAGGGAAACTATCTCAAGCGATAT-AAATCTTCTATTTTGAGGGAAACTATCTC
53 TCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
6129 AAGCG-GA-AAAA--ATCT-TAT-GAGAGAAACTATATCAAGC--GA-AATATCTTCTG-TT-GA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* ** *
6183 GGTAAAC--TCT------A-ATAAAATCTTCAATTTCGAGGAAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
6226 AAGC-A-ATATAAATCTTAAT-TTTCGA--GAAACGATCTTAAGCGAGATAAAATCTTCTGTTTC
1 AAGCGAGATA-AAATCTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTC
* * * *
6286 GAAGGAAACTATCCCAATCGAGACAAAATCTTCTGTTTCGAGGGAAAACTATCTC
64 GAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATCTC
6341 AAGCGAG--AAAATCTTCTGTTTCGAGGGAAACTATCTCAAGC--GATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
6402 GGGAAAC-ATCTCAAGCGA-A-AAAATCTTCTGTTTCGA-GGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
6450 AAGCGAGA-CAAATTTTCTGTTTCGAGGGAAAC--TCTTAA---AGAT--AATCTTCTATTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
6507 GGGAAACTATCTCAAGCGAGACAAAATCTTCTCTTTCAAGGGAAACGATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
6559 AAGCGGGAAAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGATATAAAATCTTCTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
6624 GGGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAGGAAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * ** *** ** ** * * * * *
6676 AACCAAGGGAAACTATC-TCAACTAAGA-TAAAATGTTTTGTTTCAAGGGAAACTATCTCAAGGG
1 AAGCGAGATAAA--ATCTTCTGTTTCGAGGGAAA----CTATCTCAAGCGAGA-TA----AA---
** * ** * *
6739 AGGTAAAATCTTCTGTTTCAGGGAAA-TATCTCAAGCAAGAT-AAA-CTTCTGTTTCGAGAGAAA
52 A--T--CTTC-TGT-TTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAA
6801 C--TCTC
111 CTATCTC
* * *
6806 AAGCGAGATAAAATATTCTGTTTC-ATGGGACACTATCTCAAGCGAGATAAAAACTTCTGTTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
*** * * *
6870 CTTGAAACTATCTCAAGGGAGATAAAATCTTCTGTTACGAGGGAAACTATCTA
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
6923 AAGCAAAACAAAATCTTCTATTTTGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTTTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
6988 GAGAAACTATCTCAAGCGCGATAAAATTTTCTGTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
7040 AAGCGAGATAAAATGTTATGTTTCGAAGG-AACTATCTCAAGCGAGA-AAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
7103 GGTAAACT-T-T-AA--GTGATAAAATCTTCTGTTTCGAGGGAAACTATCCC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
7150 AAGCGAGACAAAATCTTCTATTTCGAGGGAAACTATCCCAAGCGAGACAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
7215 GGTAAACTATCCCAAGCGAGACAAAATCTTCTGATTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
7267 AAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGATATAAAATCTTCTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
7332 GGGAAACTTTCTCAAGCGAGATAAAATCTTCTGTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
7384 AAGCGAGATAAAATCTTCTGTTCCGAGGAAAATTATCTCAAGCAATATAAAATCTTAAT-TTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
* * *
7448 A-GGAAACGATCTCAAGCGAGATAAAAT-TGTCTGTTTCGAGAGAAAATATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATCTC
* * ** * * * **
7500 AAGCGATATAAGATCTTCAATTTTG-GTGGAACAC-ATCTCAAGCAAGAAAAAATCTTCAATTTC
1 AAGCGAGATAAAATCTTCTGTTTCGAG-GGAA-ACTATCTCAAGCGAGATAAAATCTTCTGTTTC
* * * *
7563 AAGGGAAACTATCTCAAGCGAGACAAAATCATCTGTTTCGGGGGAAACTATCTC
64 GAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
7617 AAACGATAAAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGC-A-ATAAAATC-T-TATTTC--
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
7676 GTGAATCTATCTC-AGCGAGAT-AAA-CTTCTGTTTC-AAGGAAACTACCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
7724 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAA-TATCTCAAGCGATAT-AAATCTTC--TTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
7785 GGGAAACTATC-CAAGCGAGACAAAATCTTTTGTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
7836 AAGCGAGATAAAATCTCCTGTTTCGAGAGAAACTATCTCAAGCGATATAAAATCTTCTATTAT-G
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTT-TCG
* * * *
7900 AGAGAAACTATATCAAGCGAAATAAAATCTTCTGTTT-GA-GGAAACTATCTT
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
7951 AAGCGAGAT-AAATCTTCTATTTCGA-GGAAACTA--TCAAGCAATATAAAATCTTAAT-TTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
** * * *
8011 ACAGAAACGATCTCAAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATCCC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
8064 AATCGAGACAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
*
8129 GGGAAACTATCTCAAGCGATATAAAATCTTCTGTTTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
8181 AAGCGATATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTACGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
8246 GGGAAACTATCTCAAGCGAGATAAAATCTT-TTTTTCCGAGGAAAATTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTT-CGAGGGAAACTATCTC
* * * * * *
8298 AAGCAATATAAAATCTT-TATTTTAGAGGGAAACGATCTCAAGCGAGATAAAATCCTCTGTTTCG
1 AAGCGAGATAAAATCTTCT-GTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** * *
8362 AGGGAAACTATCTCAAGCGATATAAGATCTTCAATTTTG-GTGGAAA-AATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAG-GGAAACTATCTC
* * * ** * * *
8414 AAGCAAGAAAAAATATTCAATTT-AAGGGGAAACTATCTCAAGCGAGACAAAATCATCTGTTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * **
8478 AGGGAAACTATCTCAAACGAGAAAAAATCTTCTGTTTCGATTGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * * *
8531 AAGCGAGATAAAATATTTTGTTTCAAGTGAAACTATCTCAAGCAAGATAAAATCTTATATTTCGT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
8596 GGGAATCTATCTCAAGTGAGATAAAATCTTCTATTTCAACGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * **
8648 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAAGTATCTCAAGCGATATAAAATCTTCTAATTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
8713 GGGAAACTATCCCAAGCGA-ATCAAAATCTTTTGTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCGAGGGAAACTATCTC
* ** * * * *
8765 AAGCAAGATAAAATCTAATGTTTCGAGGGAAACTATCTTAAGCGATATAAAATCTTCTATTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * * * *
8830 GAGAAACTATATCAAGCAAAATAAAATCTTCTGTTTTGAGGTAAACTATCTT
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
8882 AAGCGAGATAAAATCTTCTATTTCGAGGAAAACTATCTCAAGCAATATAAAATCTTAAT-TTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTT-CTGTTTCG
** * * * *
8946 ACAGAAACGATCTCAAGCGAGATAAAATCTTCTGTTTCAAAGGAAACTATCCC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
8999 AAGTGAGACAAAATCTTCTGCTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * * ***
9064 GGGAAACAATCTCAAGCAAGATAAAATATTTTGTTTCAATTAAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
9116 AAGCAAGATAAAATCTTCTGTTTCGTGGGTATCTATCTCAAGCGAGATAAAATCTTCTGTTTCTA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
9181 GGGAAACTATCACAAGCTAGATAAAATCTTCTGTTTTGGAGGGAAAGTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
* ** * * * *
9234 AAGCAAGATAAAAAATTCTGTTTCAAGGGAAACTATCTCAAGCCATATAAAATCTTCTATTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
9299 AGAAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCTAAGGAAACTATCTA
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
9351 AAGCGGGAAAAAATCTTCTGTTTCGAGGGAAAGTATCTCAAGCGAGACAAAATTTTTTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * ** * *
9416 GGGAAACTATCTTAAGAGAGGCATAATCTTCTATTTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
*
9468 AAGCGAGACAAAATCTTCTGTTTTC-AGGGAAACTATCTCAAGCGAGA-AAAATTCTTCTGTTTC
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGATAAAA-TCTTCTGTTTC
* * ** * * * *
9531 GAGGGAAACGATCTCAAGCAAGGCAAAATCTTCAGATTT-AAGAGAAACTATCTG
64 GAGGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTC
* * * *
9585 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCACAAGCGAGACAAAATCTTCTATTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
9650 GGGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGTA-TGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTC
*
9702 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGATATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
9767 GAGAAACTATATCAAGCGAGATAAAATCTTCTGTTTCAAGGGAAACGATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
9819 AAGCGAGATAAAATCCTATGTTTCGAGGGAAACTATCTCAAGCGATATAAGATCTTCAAT-TTTT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC--TGTTTC
* * * * ** *
9883 GTGGAAAAC-ATCTCAAGCAAGAAAAAAATCTTCAATTTCAAGGGAAACTATCTC
64 GAGGGAAACTATCTCAAGCGAG-ATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
9937 AAGCGAGACAAAATCATCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATATTTTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * *
10002 GTGAAACTATCTCAAGCAAGATAAAATCTTATGTTTCGTGGGAATCTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* *
10054 AAGCGAGATAAAATCTTCTGTTTCAACGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * * *
10119 GGGAAAGTATCTCAAGCAAGATAAAATATTCAGTTTCAAGGGAAACTATTTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * * *
10171 AACCG-GTAAAAAATATTCTATTTCGAGAGAAACTATCTCAATCGAGATAAAATATTCAGTTTC-
1 AAGCGAG-ATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
10234 ATTGGAAAATATCTCAAGCGAGATAAAATCTTTTGTTTCGATGGATACTATCTTA
65 A-GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC-TC
* * * * * * *
10289 AAG-GAGATAAAATCATATGTTTTGAGGGAAACTATCTCAAGTGAGACAAAATCTTCTATTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * ** *
10353 GAGAAA-TCATCTCAAGCGAGACAAAATCTTCTGTTTCGAGTAAAACTATCTT
66 GGGAAACT-ATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * * *
10405 TAGCGAGATAAAATATTTTCTTTCAAGAGAAACTATCTCGAGCGAGATAAAATCTTCTTTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
10470 GGGAAAATATCTCAAGCGAGAAAAAATCTTTTGTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
10522 AA-CAAAATAAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTGTTTTC-
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCG
*
10585 AGGGAAACTATCTCAAGCGAGA-AAAATTCTTCTGTTTCGAGGGAAACGATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAA-TCTTCTGTTTCGAGGGAAACTATCTC
* ** * * *
10638 AAGCAAGGCAAAATCTTCAGTTT--AGAGAAACTATCTGAAGCGAGATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
10701 GGGAAACTATCACAAGCGAGACAAAATCTTCTATTTTGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
10753 AAGCGAGATAAAATCTTTTGTTTCGTA-TGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCG
1 AAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
10817 AGGGAAACTATCTCAAGCGATATAAGATCTTCTATTTTGAGGGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
10870 AAGCGAGAAAAAATCTTCTATTTCGAGTGAAATTATCTCAAGCGAGATAAAATCTTATGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
10935 AGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAGTGAAACAATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
10987 AAGAGAGAGAAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTCTTTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
*
11052 GGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTC-ATGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
* * * * *
11104 AAGCGAGAAAAAATCTTTTGTTTCGAGGGAATCTATCTGAAGCGAGA-AATAATTTTCTGTTTCG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAA-AATCTTCTGTTTCG
* * * *
11168 AGGAAAACTATCTCAAGCGACATAAAATCTTCTGTTTCAAGGGAAACTATCTG
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
11221 AACCGAGATAAAATATTTTGTTTCAAGGGAAACTATCTCTAGCGAGGTAAAATCTTCTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
*
11286 GGGTAAA-TATCTCAAGCGAG-GAAAATCTTCTGTTTCGAGGGAAACTATCTC
66 GGG-AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
11337 AGGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTTAAGTGATATAAGATCTTCTATTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
11402 GGGAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCGATGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
11454 AAGCGAGATAAAATCTTATATTTTGAAGGAAACTATCTCAAGCGAGAT-AAATATTCT-TTTC-A
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
*
11516 TTGGAAACTATCTCAAGC--GAT-AAATCTT-TGTTTCGA-GGAAACTATCTC
66 -GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * *
11564 AA-AGAGAT-AAATCTACTGTTTTGAGGGAAACTATATCAAGC-ACGACAAAATCTTCTATTTTG
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGA-GATAAAATCTTCTGTTTCG
* * * * * * *
11626 AGAGAAACCATCTCAAGCGAGACAAAATCTTTTATTTCGAGTGAAACTATCTT
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * *
11679 TAGCGAGATAAAATATTTTATTTC-AGGAAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
11743 GGGAAAATATCTCAAGCGAGAAAAAATCTT-TGTTTCAAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
11794 AAGCGAGATAAAATCTTCTATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTTTGTTTTC-
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTG-TTTCG
*
11858 AGGGAAACTATCTCAAGCGAGA-AAAACTCTTCTGTTTCGAGGGAAACGATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAA-TCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
11911 AAGCGAGACAAAATCTTCAGATTT-GAGTGAAACTATCTCAAGCAAGAGAAAATCTTCTATTTCG
1 AAGCGAGATAAAATCTTCTG-TTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * *
11975 AGGGAAACTATCACAAGCGAGACAAAATCTTCTATTTGGAGGGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
12028 AAGTGAGATAAAATCTTTTGTTTCGTA-TGAAACTATCTCAAGCGAGATAAAATATTCTGTTTCG
1 AAGCGAGATAAAATCTTCTGTTTCG-AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
12092 AGGGAAACTATCTCAATCAATATAAGATCTTCTATTTTGAGGGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
12145 AAGCGAGA-AATAATCTTCTATTTCGAGGGAAACTATATCAAGCGAGATAAAATCTTATGTTTTG
1 AAGCGAGATAA-AATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
12209 AAGGAAACTATCTCAAGCGATAAAAAATCTTCTGTTTCGAGTGAAACAATCTT
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
12262 AAACGAGAAAAAATCTTCTGTTTCGAGGGCAACTATCTCAAGCGAGATAAAATCTTCTATTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * ** *
12327 GGGCAACTATCTCAAGCGAGATAAAATCTTCTGCTTCGATAGAAACTATCTA
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
12379 AAGCGAGAAAAAATCCTCTGTTTCAAGGGAAACTATCTCAAGCGAGAAAAAAACCTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * ** *
12444 GGGAATCTATCTGAAGCGAGA-AATAATTTTCTGTTTC-TTGGAAATCTATCGC
66 GGGAAACTATCTCAAGCGAGATAA-AATCTTCTGTTTCGAGGGAAA-CTATCTC
* * * * * *
12496 AAGCGACATAAAATCTTCTGTTTCGAGGGAAACTATCTTAACCGAGATAAAATATTTTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
12561 GGGAAACTATCTCAAGCGAGGTAAAATCTTCTGTTTCTATGGTAAA-TATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATCTC
*
12613 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGT
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-
*
12678 A-GGAAACTATCTCAAGCGAGATAAAATATTCTGTTTCGAGGGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
12730 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGATATAAGATCTTCTATTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* *
12795 GGGAAACTATCTCAAGCGAGAAAAAATCTTCTATTTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
12847 AAGCGAGATAAAATCTTATGTTTTGAAGGAGACTAACTCAAGCGAGAAAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * ** * * *
12912 GTGAAACAATTTCAAAAGAGAAAAAACCTTCTATTTCGAGGGAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
12964 AAGCGATACAAAATCTTCTGTTTCGAGGTAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * * * *
13029 GGTAAAATATCTTAAGTGAGATAAATTCTTCTGTTTCGAGGGAAACTATCAC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
13081 AAGCGAGA-AAAATTTTCTGTTTTGAGGAAAACTATCTCAAGCGACATAAAATCTTCTGTTTCGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * * *
13145 GGGAAACTATCTCAACCGAGATAAAATCATCTATTTCGAGGGAAACTATATC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * *
13197 AAGCGATATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGTGAGATAAAATCTTCTGTTTTGA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
* * *
13262 GGGAAACTATCTCAAGCGAGATAAAATCTTCTATTCCGAGGAAAACTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * * * * * *
13314 AAGCAATATAAAATCTTAAT-TTTCGAGGGAAACGATCTCTACCGAGATAAAATCCTATGTTTCG
1 AAGCGAGATAAAATCTT-CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * ** * *
13378 AGGGAAACTATCTCAAGCGATATAAGATCTTCAATTTTGAGGGAAAAC-ATCTT
65 AGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATCTC
** * * *
13431 AAGCGAGA-AGAAATCTTCAATTTCAAGGGAAACTTTCTCAAGCGAGAAAAAATCTTCTGTTTCG
1 AAGCGAGATA-AAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG
* * * * * *
13495 AGGGAAACTATCTCAAGCTATATAAAATAATT-AGTTTCAAGTGAAACTATCTC
65 AGGGAAACTATCTCAAGCGAGATAAAAT-CTTCTGTTTCGAGGGAAACTATCTC
* * * * * *
13548 AAGCAAGATAAATTCTTATGTTTCGTGGGAATCTATCTCAAGCGAGATAAAATCTTCTGTTTCAA
1 AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
*
13613 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAAGTATCTC
66 GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
* * * *
13665 ATA---A-ATAAAATATTCTGTTTCAAGGCAAACTATCTCAAGCGATAT-AAATCTTCT
1 A-AGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCT
13719 ATT
Statistics
Matches: 11314, Mismatches: 1778, Indels: 1027
0.80 0.13 0.07
Matches are distributed among these distances:
96 3 0.00
97 38 0.00
98 25 0.00
99 14 0.00
100 59 0.01
101 51 0.00
102 89 0.01
103 45 0.00
104 118 0.01
105 101 0.01
106 116 0.01
107 175 0.02
108 209 0.02
109 246 0.02
110 320 0.03
111 507 0.04
112 319 0.03
113 234 0.02
114 503 0.04
115 577 0.05
116 1259 0.11
117 5662 0.50
118 291 0.03
119 30 0.00
120 31 0.00
121 35 0.00
122 24 0.00
123 31 0.00
124 35 0.00
125 42 0.00
126 56 0.00
127 1 0.00
128 3 0.00
129 4 0.00
130 14 0.00
131 1 0.00
132 16 0.00
133 5 0.00
134 16 0.00
135 9 0.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (117 bp):
AAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA
GGGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTC
Found at i:5427 original size:19 final size:19
Alignment explanation
Indices: 5405--5463 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
5395 TCTTCTCTTT
5405 CGAGGGAAACTATCTCAAG
1 CGAGGGAAACTATCTCAAG
* ****
5424 CGA-GAAAATCT-TCTGTTT
1 CGAGGGAAA-CTATCTCAAG
5442 CGAGGGAAACTATCTCAAG
1 CGAGGGAAACTATCTCAAG
5461 CGA
1 CGA
5464 TATAAAATCT
Statistics
Matches: 27, Mismatches: 10, Indels: 6
0.63 0.23 0.14
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (19 bp):
CGAGGGAAACTATCTCAAG
Found at i:6092 original size:88 final size:90
Alignment explanation
Indices: 5943--6125 Score: 266
Period size: 88 Copynumber: 2.1 Consensus size: 90
5933 AGATAAATCT
*
5943 TCTATTTCGAGGAAATTATCTCAAGCGAGACAAAATCTTCTGTTTCGAGGAAACTATCTCAAGCG
1 TCTATTTCGAGGAAATAATCTCAAGCGAGACAAAATCTTCTGTTTCGAGGAAACTATCTCAAGCG
6008 A-AAAAATCTTCTA-TTCGAGGGAA
66 ATAAAAATCTTCTATTTCGAGGGAA
* *
6031 TCTATTTC-ATGGAAA-AATCTGAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATCTCAAG
1 TCTATTTCGA-GGAAATAATCTCAAGCGAGACAAAATCTTCTGTTTCGA-GGAAACTATCTCAAG
* *
6094 CGATATAAATCTTCTATTTTGAGGGAA
64 CGATAAAAATCTTCTATTTCGAGGGAA
*
6121 ACTAT
1 TCTAT
6126 CTCAAGCGGA
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
87 30 0.35
88 31 0.36
89 11 0.13
90 13 0.15
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (90 bp):
TCTATTTCGAGGAAATAATCTCAAGCGAGACAAAATCTTCTGTTTCGAGGAAACTATCTCAAGCG
ATAAAAATCTTCTATTTCGAGGGAA
Found at i:6333 original size:20 final size:20
Alignment explanation
Indices: 6310--6370 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
6300 CAATCGAGAC
6310 AAAATCTTCTGTTTCGAGGG
1 AAAATCTTCTGTTTCGAGGG
****
6330 AAAA-CTATCTCAAGCGA--G
1 AAAATCT-TCTGTTTCGAGGG
6348 AAAATCTTCTGTTTCGAGGG
1 AAAATCTTCTGTTTCGAGGG
6368 AAA
1 AAA
6371 CTATCTCAAG
Statistics
Matches: 29, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
18 11 0.38
19 4 0.14
20 14 0.48
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.28
Consensus pattern (20 bp):
AAAATCTTCTGTTTCGAGGG
Found at i:6685 original size:58 final size:58
Alignment explanation
Indices: 6621--6735 Score: 160
Period size: 58 Copynumber: 2.0 Consensus size: 58
6611 TCTTCTGTTT
* *
6621 CAAGGGAAACTATCTCAAGC-GAGATAAAATCTCCTGTTTCGAGGAAAACTATCTCAAC
1 CAAGGGAAACTATCTCAA-CTAAGATAAAATCTCCTGTTTCAAGGAAAACTATCTCAAC
* ** *
6679 CAAGGGAAACTATCTCAACTAAGATAAAATGTTTTGTTTCAAGGGAAACTATCTCAA
1 CAAGGGAAACTATCTCAACTAAGATAAAATCTCCTGTTTCAAGGAAAACTATCTCAA
6736 GGGAGGTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 1 0.02
58 49 0.98
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (58 bp):
CAAGGGAAACTATCTCAACTAAGATAAAATCTCCTGTTTCAAGGAAAACTATCTCAAC
Found at i:6755 original size:97 final size:95
Alignment explanation
Indices: 6584--6777 Score: 273
Period size: 97 Copynumber: 2.0 Consensus size: 95
6574 TTCTGTTTCG
* *
6584 AGGGAAACTATCTCAAGCGATATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGATAAA
1 AGGGAAACTATCTCAAGCAAGATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGATAAA
6649 ATCTCCTGTTTCGAGGAAAACTATCTCAACCA
66 ATCTCCTGTTTC-AGGAAAA-TATCTCAACCA
* * * *
6681 AGGGAAACTATCTCAA-CTAAGATAAAATGTTTTGTTTCAAGGGAAACTATCTCAAGGGAGGTAA
1 AGGGAAACTATCTCAAGC-AAGATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGATAA
* * *
6745 AATCTTCTGTTTCAGGGAAATATCTCAAGCA
65 AATCTCCTGTTTCAGGAAAATATCTCAACCA
6776 AG
1 AG
6778 ATAAACTTCT
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
95 12 0.14
96 7 0.08
97 68 0.78
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (95 bp):
AGGGAAACTATCTCAAGCAAGATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAGATAAA
ATCTCCTGTTTCAGGAAAATATCTCAACCA
Found at i:13035 original size:20 final size:20
Alignment explanation
Indices: 12973--13036 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
12963 CAAGCGATAC
12973 AAAATCTTCTGTTTCGAGGT
1 AAAATCTTCTGTTTCGAGGT
**** **
12993 -AAA-CTATCTCAAGCGAGAA
1 AAAATCT-TCTGTTTCGAGGT
13012 AAAATCTTCTGTTTCGAGGT
1 AAAATCTTCTGTTTCGAGGT
13032 AAAAT
1 AAAAT
13037 ATCTTAAGTG
Statistics
Matches: 29, Mismatches: 12, Indels: 6
0.62 0.26 0.13
Matches are distributed among these distances:
18 2 0.07
19 10 0.34
20 15 0.52
21 2 0.07
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (20 bp):
AAAATCTTCTGTTTCGAGGT
Done.