genome.fa.s7683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007683.1 Hibiscus syriacus cultivar Beakdansim tig00028927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60512

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7295--7383	33	2.8	32	82	1	115	20	37	28	14	1.92
7430--7561	32	4.2	32	91	3	196	18	37	30	14	1.90
7428--7561	63	2.1	64	87	4	200	17	36	31	14	1.90
7608--7740	62	2.1	62	98	0	257	13	39	36	10	1.79
7619--7717	31	3.2	31	64	16	87	14	43	31	11	1.80
7775--7906	31	4.2	32	86	3	169	18	36	29	15	1.92
7670--8055	95	4.1	95	71	11	342	17	34	35	12	1.88
16244--16331	31	2.8	31	80	3	104	20	37	27	14	1.92
16244--16491	64	3.8	63	68	21	177	20	33	31	15	1.93
16378--16510	32	4.2	32	93	1	205	18	36	30	14	1.90
16557--16690	63	2.1	63	97	1	252	13	39	36	10	1.79
16442--16668	95	2.4	94	71	10	244	15	37	34	12	1.85
16407--16826	158	2.7	158	81	5	535	17	35	34	13	1.89
16725--16858	32	4.2	32	89	0	187	17	35	30	15	1.92
16620--17014	94	4.2	95	71	18	311	16	34	35	12	1.88
25315--25446	32	4.2	32	92	2	196	17	37	31	14	1.90
25493--25624	61	2.1	62	95	4	241	13	40	35	10	1.79
25403--25874	155	3.0	156	81	9	604	16	35	35	12	1.87
25651--25741	33	2.8	32	86	3	119	18	32	31	16	1.93
25724--25893	95	1.8	91	88	5	259	18	36	34	11	1.86
34026--34114	33	2.8	32	82	1	115	20	37	28	14	1.92
34161--34273	32	3.6	32	92	4	185	20	36	28	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34336--34465	63	2.1	61	92	5	219	13	40	34	10	1.80
34341--34444	31	3.3	32	67	15	92	13	42	32	11	1.80
34224--34444	94	2.4	90	68	13	196	15	37	33	12	1.86
34256--34537	153	1.8	155	85	7	405	15	36	35	12	1.85
34346--34707	186	1.9	190	83	7	481	17	36	33	12	1.88
34500--34632	32	4.2	32	87	2	178	18	36	30	15	1.92
34500--34632	63	2.1	65	85	2	180	18	36	30	15	1.92
34398--34779	94	4.1	94	70	13	304	17	34	35	13	1.88
42928--43015	32	2.8	32	80	3	106	20	37	27	14	1.92
43062--43191	32	4.2	31	90	4	174	18	37	29	14	1.90
43246--43347	32	3.2	32	68	13	102	13	42	33	10	1.79
43273--43370	31	3.1	31	66	13	92	13	39	37	9	1.76
43244--43370	63	2.0	63	100	0	254	14	40	35	9	1.78
43156--43442	156	1.8	157	89	3	454	15	36	36	11	1.85
43442--43495	25	2.1	26	89	3	83	25	31	27	14	1.95
43467--43531	32	2.0	32	90	0	103	18	38	29	13	1.89
51800--51886	31	2.8	32	77	7	97	20	37	26	14	1.92
51936--52063	32	4.0	32	90	4	188	18	36	30	14	1.90
51931--52063	63	2.1	64	86	5	191	18	36	30	14	1.90
52110--52242	61	2.1	63	97	2	252	13	39	36	10	1.79
52027--52312	156	1.8	155	87	6	427	15	36	36	12	1.85
52147--52246	31	3.3	31	66	23	93	13	41	36	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52275--52407	32	4.2	32	88	1	178	18	36	30	15	1.92

Tables:   1

The End!