Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007684.1 Hibiscus syriacus cultivar Beakdansim tig00028966_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7536
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Found at i:312 original size:39 final size:39
Alignment explanation
Indices: 7--7527 Score: 5501
Period size: 39 Copynumber: 200.5 Consensus size: 39
1 AAACCA
* *
7 TCAAGCGAGATAAAATATTATGTTTCGAGGGAAAC-ATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
45 TCAAGCGAGATAAACTCTTCTGTTTC-ATGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATC
*
84 TAAAGCGAGATAAAATC-T-TGTTTCGAGGGAAAC--TC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
119 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* **
158 TC-AGAGAGATAAAATCTTCTGTTTCGAGGGAAAAGAT-
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
195 TCAAGCGAGATAAAA---TCTATTT-GACGGAAA-TATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
229 TAAAGCGAGATAAAATCTT-TGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
267 TTAAGCGAGATAAAATCTTCTATTTGGACGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * **
306 TCAAGCGAAACAAAATCTTCTATTTTGAAAGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
345 TCAAGCGAGATAAAATATTCTATTTC-AAGAAAACTAAC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
383 TCAAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
422 TCAAGCGAAAAAAAAT-TT-TGTTTAGAGGG-AACATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAAC-TATC
* * *
459 TCAAACAAGAGAAAATCTT-TG-TTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
496 TCAAGCGAGA-CAAATATTC--TTT-GAGGGAAACTA--
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
529 TCAAGC--GA-CAAATCTT-T-TTTCGAGGGAAACTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
563 TCAAGCGAGAAAAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * ** *
602 TAAAGTGTGGCAAAATCTTCTGTTTCGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
641 TCAAGCGAGATAAAATCTTCTGTTTTGAGGAAAACAATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
680 TCAAGCGAGAAAAAATCTTATG-TTCGAGGGAAAC-ATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
717 TCAAGCGAG--AAAATATTATGTTTCGAGGGAAAC-ATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
753 TCAAGCGAGAT-AAATCTTCTGTTTC--GGGAAAC--TC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
787 TAAAGCGAGATAAAATCTT-TGTTTCGAGGGAAACTCTC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
825 TCAAGCGAG--AAAATCTTTTG-TTCGAGGGAAAAATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGG-AAACTATC
**
862 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAAAGAT-
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
900 TCAAGCGAGA-AAAATC-T-TGTTT-GA--GAAAATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
933 TCAAGCGAGATAAAA--TT-T-TTTCGAGGG-AACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* ** * ** *
967 TTAAGCTTTTG-GACGGAAA-CTATCAAG---CGA-ACAAAAT-TC
1 TCAAGC----GAGA-TAAAATCT-TC-TGTTTCGAGGGAAACTATC
** * * ** *
1006 T-ATTCGAGA-AACTATC-TCAAG---CGAGATAAA-TATT
1 TCAAGCGAGATAA-AATCTTC-TGTTTCGAGGGAAACTATC
* ** ** ***
1040 TCAAGAAACTATCTCAAGCGAGATAAAATCT-TATGTTTTGAGG-AA--A-C
1 TCAAG---CGAGAT-AA---A-AT--CTTCTGT-T-TCGAG-GGAAACTATC
*
1087 TCAAGCGA-ATAAAATCTTCTATTTCGAGGG-AACATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAAC-TATC
* *
1125 TCAA-CAAGAGAAAATCTTCTGTTT-GA---AAA-TATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
1158 TCAAGCGAGATAAAAT-TT-TGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
1195 TCAAGCGAGA-CAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
1233 TCAAGCGAGACAAAATCTTCTGTTT---GGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
1269 TCAAGTGAGA-AAAATCTAT-T-TTT-G-GAGAAACTATC
1 TCAAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATC
*
1304 T-AAGCGAGA-AAAA--TTCTATTTC--GGGAAACTA--
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
1335 TCAAGCGAGATAAAATCTTCAGTTTC---GGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
1371 TCAAGCGAGA-AAAATCTTTTG-TTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *****
1408 TCAAGCGAGA-AAAA-CTATC----TCAAGTCTTTCTA--
1 TCAAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATC
* *
1440 TCAAGCGAGACAAAATCTT-T-TTTAGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
1477 TCAAGCGAGACAAAATCTTCTATTTCGA--GAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
1514 TCAAGCGAG-T-AAATATTCT-ATTC-ATGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
1549 TCAAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
1588 TTAAGCGAAAAAAAATCTTTTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
1627 TCAAGCGAGACATAA---TC----TC-----AAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
1654 TCAAGCGAGATAAAATATTCTATTTC-AAGAAAACTAAC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
1692 TCAAGCGAGATAAAATCTTATGTTTCGAAGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
1731 TCAATCAAGAAAAAATTTTCTGTTTTGAGGG-AACATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAAC-TATC
* * *
1770 TCAAACAAGAGAAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
1809 TCAAGCGAGACAAAATATTCTATTTTGAGGGAAACTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
1848 TCAAGCGAGACAAAATCTTTTTTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* **
1887 TCAAGCGA-A-AAAATCTTCTATTTCGAAAGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
1924 TCAAGCGAGATAAAATATTCTATTTC-AAGAAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
1962 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACAATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
2001 TCAAGCGAGAAAAAAACTTATGTTTCGAGGG-AACATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAAC-TATC
* * *
2040 TCAAACAAGAGAAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
2079 TCAAGCGAGACAAAATATTCTATTTTGAGGGAAACTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
2118 TCAAGCGAGACAAAATCTT-TTTTTCGAGGGAAGCTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* **
2156 TCAAGCGAGAAAAAATCTTCTGTTTCGAGATAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * * *
2195 TAAAGCGTGACAAAATCTTCTATTTTGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
2234 TCATGCGAGATAAAATTTTCTGTATCGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
2273 TCAAGCGAGATAAAATCTTCTATTTCGTGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
** * * *
2312 TCAATTGAGATAAAATCTTTTGTTTTGAGGGAAACTTTC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
2351 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGATACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
2390 TCAAGCAAGATAAAATCTTGTATTTTGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
2429 TCAAGCAAGACAAAATCTTTTATTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
2468 TAAAGCAAGATAAAATCGTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
2507 TCAACCGAGATAAAATCTTCTGTTTCAAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
2546 TCAAGCGAGATAAAATATTATGTTTCGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
2585 TCAAGCGAGATAAACTCTTCTGTTTC-ATGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATC
* *
2624 TAAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACT-TC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
2662 TCAAGCGAGAT-AAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
2700 TCAA--GAGAGAAAATCTTCTGTTTCGAGGGAATA-GAT-
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAA-ACTATC
* * *
2736 TCAAGCGAGATAAAA--TTAT-TTT-GACGGAAAATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
2771 TAAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
2810 TTAAGCGAGATAAAATCTTCTATTTGGACGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * **
2849 TCAAGCGAAACAAAATCTTCTATTTTGAAAGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
2888 TCAAGCGAGATAAAATATTCTATTTC-AAGAAAACTAAC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
2926 TCAAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
2965 TCAAGCGAAAAAAAAAT-TT-TGTTTAGAGGG-AACATATC
1 TCAAGCG-AGATAAAATCTTCTGTTTCGAGGGAAAC-TATC
* * * * *
3003 TCAAACAAGAGAAAATCTTTTGGTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
3042 TCAAGCGAGACAAATAT-TTGTGTTT-GAGGGAAACTATA
1 TCAAGCGAGATAAA-ATCTTCTGTTTCGAGGGAAACTATC
* *
3080 TCAA--GAGACAAAATCTAT-TTTTTCGAGGGAAAACTA--
1 TCAAGCGAGATAAAATCT-TCTGTTTCGAGGG-AAACTATC
3116 TCAAGCGA-A-AAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * **
3153 TAAAGTGTGGCAAAATCTT-TG-TTCGA-GGAAAC-ATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
3188 TCAAGCGAGATAAAATCTTCTGTTTTGAGGAAAACAATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
3227 TCAAGCGAGAAAAAATCTTATGTTTCGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
3266 TCAAGCGAGATAAAATATTATGTTTCGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
3305 TCAAGCGAGATAAACTCTTCTGTTTC-ATGGGAAACTGTC
1 TCAAGCGAGATAAAATCTTCTGTTTCGA-GGGAAACTATC
* * *
3344 TAAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTCTC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
3383 TCAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* **
3422 TCAAGAGAGATAAAATCTTCTGTTTCGAGGGAAAAGAT-
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
3460 TCAAGCGAGATAAAATCTTTTGTTTTGACGAAAAATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
3499 TCAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
3538 T---------T--AAGCTTCTATTTGGACGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * **
3566 TCAAGCGAAACAAAATCTTCTATTTCGAAAGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
3605 TCAAGCGAGATAAAGTATTCTATTTC-AAGAAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
3643 TCAGGCGAGATAAAATCTTATGTTTTGAAGG-AA--A-C
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
3678 TCAAGCGAGA-ATAAATCTTCTATTTCGAGGG-AACATATC
1 TCAAGCGAGATA-AAATCTTCTGTTTCGAGGGAAAC-TATC
* * * **
3717 TCAAACAAGAGAAAATCTTCTGTTTCGAGACATAA-TATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGA-AACTATC
* * *
3756 TCATGCGAGATAAAATTTTCAGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
3795 TCAAGCGAGACAAAGTCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
3834 TCAAGCGAGACAAAATATTCTAG-TTGGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCT-GTTTCGAGGGAAACTATC
* * * * * **
3873 TCAAGTGAGACAAAATCTTATATTTTTG-GAAAAAACTATC
1 TCAAGCGAGATAAAATCTTCT-GTTTCGAG-GGAAACTATC
* * * *
3913 TTAAGCGAGA-AAGA--TTCTATTTC-TGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
3948 TCAAGCGAGATAAAATCTTCT-TTT-AAAGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
3985 TCAAGCGAGA-AAAATCTT-TGTTTCGAGGGAAAC-ATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *** *
4021 TCAAGCGAGCTAATTCTCAAACTATCTAAGT-GAGGCAAA--ATC
1 TCAAGCGAGATAA-----AATCT-TCTGTTTCGAGGGAAACTATC
* ** * **
4063 T-ACAGTTTGGAGGGAAACTATC-TCAAG--T-GAGACAAATCT-TC
1 TCA-AG---CGAGATAAA--ATCTTC-TGTTTCGAGGGAAA-CTATC
*** ** **** ** * *
4104 T--ATTTAG-GGAAA-CTATCTCAAGCGAGACAAAATTTTATT
1 TCAAGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA--CTATC
* * ** *
4143 TCAA--GAGA-AACTATC-TCAAG---CGAGTTAAATCTATT
1 TCAAGCGAGATAA-AATCTTC-TGTTTCGAGGGAAA-CTATC
* ** * **
4178 TCATG-GA-A-ACTATC-TCAAG---CGAGATAAAATCT-TC
1 TCAAGCGAGATAAAATCTTC-TGTTTCGAG-GGAAA-CTATC
**** ** ** * **
4212 TGTTTCGA-AGGAAA-CTATCT-TAAGCGA--AAAAAAATC
1 TCAAGCGAGATAAAATCT-TCTGT-TTCGAGGGAAACTATC
*** ** **** **
4248 TTTTGTTTCGAG-GGAAA-CTATCTCAAGCGAGACATAATCTCAAACTATC
1 TCAAG---CGAGATAAAATCT-TCTGTTTCGAG--------GGAAACTATC
* * * * *
4297 TCAAGCGAGATAAAATATTCTATTTC-AAGAAAACTAAC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
4335 TCAAGCGAGATAAAATCTTATGTTTCGAAGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
4374 TCAATCAAGAAAAAATTTTCTGTTT-GAGGGAAAC-A--
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
4409 TCAAACGAG--AAAATCTT-TGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
4445 TCAAGCGAGACAAAATATTCTATTTTGAGGGAAACTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
4484 TCAAGCGAGACAAAATCTTTTTTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * **
4523 TCAAGCGAAAAAAAATCTTCTATTTCGAAAGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
4562 TCAAGCGAGATAAAATATTCTATTTC-AAGAAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
4600 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACAATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
4639 TCAAGCGAGAAAAAAACTTATGTTTCGAGGG-AACATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAAC-TATC
*
4678 TCAAACGAG--AAAATCTTCTG-TTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
4714 TCAAGCGAGACAAAATATTCTATTTTGAGGGAAACTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
4753 TCAAGCGAGACAAAATCTTTTTTTTCGAGGGAAGCTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* **
4792 TCAAGCGAGAAAAAATCTTCTGTTTCGAGATAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * * *
4831 TAAAGCGTGACAAAATCTTCTATTTTGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
4870 T---GCGAGATAAAAT-TT-TGTATCGAGGGAAAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGG--AAACTATC
*
4906 TCAAGCGAGATAAAATC-T-TGTTTCGTGGG-AACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
4942 TCAA-TGAGATAAAATCTTTTGTTT-GAGGGAAACTTTC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
4979 TCAAGCGAGATAAAATCTTCTGTTTCGAGGG-AACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
5017 TCAAGCGAGATAAAATCTTGTATTTTGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
5056 TCAAGCAAGACAAAATCTT-TGTTTCGAGGG-AACTA--
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5091 TCAAGC-AGAGAAAATC-TCTGTTTCGA-GGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5127 TCAAGCGAGATAAAATCTTCTGTTTC-AAGGAAACTA--
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5163 TCAAGCGAGATAAAATATT-T-TTTCGA-GGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
5199 TCAAGCGAGAT-AAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
5237 T-AAGCGAGAT-AAATCTTTTGTTTCGA-GGAAACTCTC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
5273 TCAAGCGAGAT-AAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
5311 TCAAGCGAGA-AAAA-CTTCT-TTTCGAGGG-AACTAT-
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5345 TCAAGCGAGATAAAA--TTCT-TTTTGA-GGAAA-TATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5379 TAAAGCGAG--AAAATCTT-TGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5415 TTAAGCGAGATAAAATCTTCT-TTT-GA-GGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* **
5451 TCAAGCGA-A-ACAAATCTTCTATTT-GAAAGAAACTATC
1 TCAAGCGAGATA-AAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
5488 TCAAGCGAGATAAAATATTCTATTTC-AAGAAAACTAAC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5526 TCAAGCGAGATAAAATCTTCTGTTTCGAAGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5565 TCAAGC--GA-AAAAT-TT-TGTTTAGAGGG-AACATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAAC-TATC
* * * *
5599 TCAAACAAGAGAAAATCTTTTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5638 TCAAGCGAGACAAAA--TTCTGTTT-GAGGGAAACTA--
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * *
5672 TCAAGCGTGACAAAATC-TAT-TTTCGAGGGAAACTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
5709 TCAAGCGAGA-AAAATCTTCT-TTTCGAGGG-AACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * ** *
5745 TAAAGTGTGGCAAAATCTTCTGTTTCGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
5784 TCAAGCGAGATAAAATCTTCTGTTTTGAGGAAAACAATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
5823 TCAAGCGAGAAAAAATCTTATGTTTCGAGGGAAACCATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
5862 TCAAGCGAGATAAAATATTATGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5901 TCAAGCGAGAT-AAA-CTTCTGTTTC-AGGGAAACTGTC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5937 T-AAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
5975 TCAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
6014 TC-A---AGAT-AAATCTTCTGTTTCGAGGGAAAATAT-
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
6047 TCAAGCGAGATAAAATCTTTTGTTTTGA-CGAAA--ATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
6083 TCAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
6122 T-AAGCTTCTATTTGGAGAAAATCTCACGAAAAATCTTCTATTTCGA--GAAACTATC
1 TCAAG---C------GAG---AT-------AAAATCTTCTGTTTCGAGGGAAACTATC
* *
6177 TCAAGCGAGAT-AAA--TTCTATTTCAAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
6213 TCAAGCGAGATAAAATCTTATGTTT-GA-GG-AA--A-C
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
6246 TCAAGCGAGAT-AAA---TCTATTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
6281 TCAAACGAG--AAAATC-T-TGTTTCGA--GAAAATATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
6314 TCATGCGAGATAAAATTTTCAGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
6353 TCAAGCGAGACAAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
6392 TCAAGCGAGACAAAATATTCTATTT-GAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
6430 TCAAGC------AAATCTTCTATTT---TGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
**
6460 T-AAGCGAG-TAAAAGATTCT-TTT-----GAAAC--TC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
6489 TCAAGCGAGATAAAATCTTCAGTTTC-AAGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
6527 TCAAGCGAGA-AAAATCTT-TGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * * * **
6564 TCAAGCGAGGCT-AATTCTCAACTATCTCAAGTCAAA--ATC
1 TCAAGCGA-GATAAAATCT--TCTGTTTCGAGGGAAACTATC
**** ** **** **
6603 T-GTTTGAG-GGAAA-CTATCTCAAGCGAGACAAA--ATC
1 TCAAGCGAGATAAAATCT-TCTGTTTCGAGGGAAACTATC
* *** ** **** ** *
6638 TTCTATTTAG-GGAAA-CTATCTCAAGCGAGACAAAATCTTCTATT
1 -TCAAGCGAGATAAAATCT-TCTGTTTCGAG-GGAAA----CTATC
* * * **
6682 TCAAG-GAAACTATCTCAAGCGAGTAAAATAT-TCTATTTCA-GGAAACTATC
1 TCAAGCGAGA-TA----AA---A-T---CT-TCTGT-TTCGAGGGAAACTATC
6732 TCAAGCGAGAT-AAATCTTCTGTTTCGA--GAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
6768 T-AAGC-AGAAAAAATCTT-TGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
** ** * * **
6804 TCAAGCGAGATAATCTCAAACTATCATCGAGATAAAATCTATTTCAAAAACTAAC
1 TCAAGCGAGATAAAATC-TTCTGT-TTCGAG-GGAAA-C----T-----A-T--C
6859 TCAAGCGAGATAAAATCTT-TGTTTCGA-GGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
6896 TCAATC-AGAAAAAATTTTCTGTTT-GAGGG-AACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
6932 TCAA---ACA-AAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * * * *
6967 TCAAGCGAGACAAAATATTCTATTT-TAGGGAAACTATA
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* * *
7005 TCAAGCGAGACAAAATCTTTTTTTTCGA-GGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
7043 TCAAGCGA-A-AAAATCTTCTATTTCGA--AAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
7078 TCAAGCGAGATAAAATATTCTATTTC-A--GAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
7114 TCAAGCGAGAT-AAATCTTCTGTTTCGAGGGAAAC-A-C
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
7150 TCAAGCGAGA-AAAA-ATTATGTTTCGA-GG--A--ATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
7182 TCAAAC-AGATAAAATCTTCTGTTTCGA-GGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
* *
7219 TCAA-CGAGA-CAAATCTTCTATTT-GA-GGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
7254 TCAAGCGAGACAAAATC-T-T-TTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
*
7290 TCAAGCGAGAAAAAATCTTCTGTTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
7329 T-AAGCGAGA-AAAATCTTCT-TTT--AGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
7363 TC-AGCGAGATAAAATCTTCTGTTTCGAGGGAAAC-ATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
7400 TCAAGCGAGATAAAATCTTC--TTTCGAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
7437 TCAA--GAGATAAAATCTT-TGTTT-GAGGGAAACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
7472 TCAAGCGAGATAAAATCTT-TGTTTCGAGGG-AACTATC
1 TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
7509 TCAAGCGAGATAAAATCTT
1 TCAAGCGAGATAAAATCTT
7528 TTTGAGGAA
Statistics
Matches: 6150, Mismatches: 815, Indels: 1037
0.77 0.10 0.13
Matches are distributed among these distances:
27 21 0.00
28 22 0.00
29 12 0.00
30 23 0.00
31 33 0.01
32 89 0.01
33 152 0.02
34 354 0.06
35 495 0.08
36 646 0.11
37 765 0.12
38 978 0.16
39 2295 0.37
40 68 0.01
41 24 0.00
42 19 0.00
43 15 0.00
44 8 0.00
45 8 0.00
46 7 0.00
47 19 0.00
48 4 0.00
49 12 0.00
50 15 0.00
51 4 0.00
52 5 0.00
53 4 0.00
54 3 0.00
55 28 0.00
56 7 0.00
57 15 0.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Consensus pattern (39 bp):
TCAAGCGAGATAAAATCTTCTGTTTCGAGGGAAACTATC
Found at i:1241 original size:19 final size:19
Alignment explanation
Indices: 1181--1241 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
1171 AATTTTGTTT
1181 CGAGGGAAACTATCTCAAG
1 CGAGGGAAACTATCTCAAG
** ****
1200 CGAGACAAATCT-TCTGTTT
1 CGAGGGAAA-CTATCTCAAG
1219 CGAGGGAAACTATCTCAAG
1 CGAGGGAAACTATCTCAAG
1238 CGAG
1 CGAG
1242 ACAAAATCTT
Statistics
Matches: 28, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 2 0.07
19 24 0.86
20 2 0.07
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (19 bp):
CGAGGGAAACTATCTCAAG
Found at i:6196 original size:21 final size:19
Alignment explanation
Indices: 6169--6226 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 19
6159 CTATTTCGAG
6169 AAACTATCTCAAGCGAGAT
1 AAACTATCTCAAGCGAGAT
*
6188 AAATTCTATTTCAAG-G-G--
1 AAA--CTATCTCAAGCGAGAT
6205 AAACTATCTCAAGCGAGAT
1 AAACTATCTCAAGCGAGAT
6224 AAA
1 AAA
6227 ATCTTATGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
15 9 0.29
16 1 0.03
17 4 0.13
19 7 0.23
20 1 0.03
21 9 0.29
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.24
Consensus pattern (19 bp):
AAACTATCTCAAGCGAGAT
Found at i:6558 original size:37 final size:38
Alignment explanation
Indices: 6487--6572 Score: 131
Period size: 37 Copynumber: 2.3 Consensus size: 38
6477 CTTTTGAAAC
6487 TCTCAAGCGAGATAAAATCTTCAGTTTCAAGGAAACTA
1 TCTCAAGCGAGATAAAATCTTCAGTTTCAAGGAAACTA
* *
6525 TCTCAAGCGAGA-AAAATCTT-TGTTTCGAGGGAAACTA
1 TCTCAAGCGAGATAAAATCTTCAGTTTC-AAGGAAACTA
6562 TCTCAAGCGAG
1 TCTCAAGCGAG
6573 GCTAATTCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 5 0.11
37 28 0.62
38 12 0.27
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (38 bp):
TCTCAAGCGAGATAAAATCTTCAGTTTCAAGGAAACTA
Found at i:6653 original size:37 final size:37
Alignment explanation
Indices: 6601--7527 Score: 727
Period size: 36 Copynumber: 25.0 Consensus size: 37
6591 CAAGTCAAAA
*
6601 TCTGTTTGAGGGAAACTATCTCAAGCGAGACAAAATCT
1 TCTGTTT-AGGGAAACTATCTCAAGCGAGATAAAATCT
* *
6639 TCTATTTAGGGAAACTATCTCAAGCGAGACAAAATCT
1 TCTGTTTAGGGAAACTATCTCAAGCGAGATAAAATCT
* * *
6676 TCTATTTCAAGGAAACTATCTCAAGCGAG-TAAAATAT
1 TCTGTTT-AGGGAAACTATCTCAAGCGAGATAAAATCT
*
6713 TCTATTTCA-GGAAACTATCTCAAGCGAGAT-AAATCT
1 TCTGTTT-AGGGAAACTATCTCAAGCGAGATAAAATCT
* * *
6749 TCTGTTTCGAGAAACTATCT-AAGC-AGAAAAAATCT
1 TCTGTTTAGGGAAACTATCTCAAGCGAGATAAAATCT
*
6784 T-TGTTTCGAGGGAAACTATCTCAAGCGAGATAATCTCAAACT
1 TCTGTTT--AGGGAAACTATCTCAAGCGAGATAA----AATCT
* ** **
6826 ATC-ATCGAGATAAAATCTATTTCAAAAACTAACTCAAGCGAGATAAAATCT
1 -TCTGTTTAG-GGAAA-C----T--A----T--CTCAAGCGAGATAAAATCT
* * * *
6877 T-TGTTTCGAGGAAACTATCTCAATC-AGAAAAAATTT
1 TCTGTTTAG-GGAAACTATCTCAAGCGAGATAAAATCT
*
6913 TCTGTTTGAGGG-AACTATCTCAA---ACA-AAAATCT
1 TCTGTTT-AGGGAAACTATCTCAAGCGAGATAAAATCT
* *
6946 TCTGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATAT
1 TCTGTTT--AGGGAAACTATCTCAAGCGAGATAAAATCT
* * *
6985 TCTATTTTAGGGAAACTATATCAAGCGAGACAAAATCT
1 TCT-GTTTAGGGAAACTATCTCAAGCGAGATAAAATCT
* * *
7023 TTTTTTTCGAGGAAACTATCTCAAGCGA-A-AAAATCT
1 TCTGTTTAG-GGAAACTATCTCAAGCGAGATAAAATCT
* * ** *
7059 TCTATTTCGAAAAACTATCTCAAGCGAGATAAAATAT
1 TCTGTTTAGGGAAACTATCTCAAGCGAGATAAAATCT
*
7096 TCTATTTCA--GAAACTATCTCAAGCGAGAT-AAATCT
1 TCTGTTT-AGGGAAACTATCTCAAGCGAGATAAAATCT
*
7131 TCTGTTTCGAGGGAAAC-A-CTCAAGCGAGA-AAAA-AT
1 TCTGTTT--AGGGAAACTATCTCAAGCGAGATAAAATCT
* * *
7166 TATGTTTCGAGG--A--ATCTCAAAC-AGATAAAATCT
1 TCTGTTTAG-GGAAACTATCTCAAGCGAGATAAAATCT
* *
7199 TCTGTTTCGAGGAAACTATCTCAA-CGAGA-CAAATCT
1 TCTGTTTAG-GGAAACTATCTCAAGCGAGATAAAATCT
* *
7235 TCTATTT-GAGGAAACTATCTCAAGCGAGACAAAATCT
1 TCTGTTTAG-GGAAACTATCTCAAGCGAGATAAAATCT
* *
7272 T-T-TTCGAGGGAAACTATCTCAAGCGAGAAAAAATCT
1 TCTGTT-TAGGGAAACTATCTCAAGCGAGATAAAATCT
7308 TCTGTTTCGAGGGAAACTATCT-AAGCGAGA-AAAATCT
1 TCTGTTT--AGGGAAACTATCTCAAGCGAGATAAAATCT
7345 TCT-TTTAGGGAAACTATCTC-AGCGAGATAAAATCT
1 TCTGTTTAGGGAAACTATCTCAAGCGAGATAAAATCT
7380 TCTGTTTCGAGGGAAAC-ATCTCAAGCGAGATAAAATCT
1 TCTGTTT--AGGGAAACTATCTCAAGCGAGATAAAATCT
*
7418 TCT-TTCGAGGGAAACTATCTCAA--GAGATAAAATCT
1 TCTGTT-TAGGGAAACTATCTCAAGCGAGATAAAATCT
7453 T-TGTTTGAGGGAAACTATCTCAAGCGAGATAAAATCT
1 TCTGTTT-AGGGAAACTATCTCAAGCGAGATAAAATCT
7490 T-TGTTTCGAGGG-AACTATCTCAAGCGAGATAAAATCT
1 TCTGTTT--AGGGAAACTATCTCAAGCGAGATAAAATCT
7527 T
1 T
7528 TTTGAGGAA
Statistics
Matches: 750, Mismatches: 63, Indels: 153
0.78 0.07 0.16
Matches are distributed among these distances:
31 4 0.01
32 11 0.01
33 26 0.03
34 38 0.05
35 116 0.15
36 182 0.24
37 177 0.24
38 127 0.17
39 23 0.03
40 3 0.00
41 2 0.00
42 7 0.01
43 4 0.01
45 1 0.00
47 1 0.00
49 2 0.00
50 7 0.01
51 4 0.01
53 1 0.00
55 14 0.02
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (37 bp):
TCTGTTTAGGGAAACTATCTCAAGCGAGATAAAATCT
Found at i:6968 original size:163 final size:163
Alignment explanation
Indices: 6676--6976 Score: 416
Period size: 163 Copynumber: 1.8 Consensus size: 163
6666 GACAAAATCT
*
6676 TCTATTTCAAGGAAACTATCTCAAGCGAGTAAAATATTCTATTTCAGGAAACTATCTCAAGCGAG
1 TCTATTTCAA-GAAACTAACTCAAGCGAGTAAAATATTCTATTTCAGGAAACTATCTCAAGCGAG
*
6741 ATAAATCTTCTGTTTCGAGAAACTATCTAAGCAGAAAAAATCTTTGTTTCGAGGGAAACTATCTC
65 AAAAATCTTCTGTTTCGAGAAACTATCTAA-CAGAAAAAATCTTTGTTTCGAGGGAAACTATCTC
6806 AAGCGAGATAATCTCAAACTATCATCGAGATAAAA
129 AAGCGAGATAATCTCAAACTATCATCGAGATAAAA
* * *
6841 TCTATTTCAA-AAACTAACTCAAGCGAGATAAAATCTT-TGTTTCGAGGAAACTATCTCAATC-A
1 TCTATTTCAAGAAACTAACTCAAGCGAG-TAAAATATTCTATTTC-AGGAAACTATCTCAAGCGA
* * *
6903 GAAAAAATTTTCTGTTT-GAGGGAACTATCTCAA-A-CAAAAATCTTCTGTTTCGAGGGAAACTA
64 G-AAAAATCTTCTGTTTCGA-GAAACTATCT-AACAGAAAAAATCTT-TGTTTCGAGGGAAACTA
6965 TCTCAAGCGAGA
125 TCTCAAGCGAGA
6977 CAAAATATTC
Statistics
Matches: 122, Mismatches: 8, Indels: 14
0.85 0.06 0.10
Matches are distributed among these distances:
162 9 0.07
163 55 0.45
164 46 0.38
165 12 0.10
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (163 bp):
TCTATTTCAAGAAACTAACTCAAGCGAGTAAAATATTCTATTTCAGGAAACTATCTCAAGCGAGA
AAAATCTTCTGTTTCGAGAAACTATCTAACAGAAAAAATCTTTGTTTCGAGGGAAACTATCTCAA
GCGAGATAATCTCAAACTATCATCGAGATAAAA
Found at i:7165 original size:109 final size:113
Alignment explanation
Indices: 6851--7527 Score: 757
Period size: 109 Copynumber: 6.2 Consensus size: 113
6841 TCTATTTCAA
* * *
6851 AAACTAACTCAAGCGAGATAAAATCTT-TGTTTCGAGGAAACTATCTCAATC-AGAAAAAATTTT
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGAAACTATCTCAAGCGAG-AAAAATCTT
*
6914 CTGTTTGAGGG-AACTATCTCAA---A-CAAAAATCTTCTGTTTCGAGGG
65 CTGTTTGAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGA-GG
* * * * *
6959 AAACTATCTCAAGCGAGACAAAATATTCTATTT-TAGGGAAACTATATCAAGCGAGACAAAATCT
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGAAACTATCTCAAGCGAGA-AAAATCT
* * * *
7023 TTTTTTTCGA-GGAAACTATCTCAAGC--GAAAAAATCTTCTATTTCGA-A
64 TCTGTTT-GAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAGG
* * *
7070 AAACTATCTCAAGCGAGATAAAATATTCTATTTC-A-GAAACTATCTCAAGCGAGATAAATCTTC
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGAAACTATCTCAAGCGAGAAAAATCTTC
*
7133 TGTTTCGAGGGAAAC-A-CTCAAGCGAGAAAAAA--TTATGTTTCGAGG
66 TGTTT-GAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAGG
* *
7178 --A--ATCTCAAAC-AGATAAAATCTTCTGTTTCGAGGAAACTATCTCAA-CGAGACAAATCTTC
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGAAACTATCTCAAGCGAGAAAAATCTTC
* *
7237 TATTTGA-GGAAACTATCTCAAGCGAGACAAAATC-T-T-TTTCGAGGG
66 TGTTTGAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGA-GG
*
7282 AAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAGGGAAACTATCT-AAGCGAGAAAAATCTT
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGAAACTATCTCAAGCGAGAAAAATCTT
*
7346 CT-TTT-AGGGAAACTATCTC-AGCGAGATAAAATCTTCTGTTTCGAGGG
65 CTGTTTGAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGA-GG
7393 AAAC-ATCTCAAGCGAGATAAAATCTTC--TTTCGAGGGAAACTATCTCAA--GAGATAAAATCT
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGA-GGAAACTATCTCAAGCGAGA-AAAATCT
*
7453 T-TGTTTGAGGGAAACTATCTCAAGCGAGATAAAATCTT-TGTTTCGAGG
64 TCTGTTTGAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAGG
*
7501 GAACTATCTCAAGCGAGATAAAATCTT
1 AAACTATCTCAAGCGAGATAAAATCTT
7528 TTTGAGGAA
Statistics
Matches: 498, Mismatches: 33, Indels: 75
0.82 0.05 0.12
Matches are distributed among these distances:
102 6 0.01
103 26 0.05
104 44 0.09
105 14 0.03
106 2 0.00
107 21 0.04
108 96 0.19
109 134 0.27
110 79 0.16
111 59 0.12
113 17 0.03
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (113 bp):
AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGGAAACTATCTCAAGCGAGAAAAATCTTC
TGTTTGAGGGAAACTATCTCAAGCGAGAAAAAATCTTCTGTTTCGAGG
Done.