genome.fa.s7688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007688.1 Hibiscus syriacus cultivar Beakdansim tig00109873_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73868

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326--354	12	2.3	13	94	5	51	24	3	6	65	1.33
2225--2259	18	1.9	18	100	0	70	34	14	0	51	1.42
3349--3503	30	5.2	30	87	3	213	27	35	21	15	1.94
6964--7010	18	2.6	19	76	10	53	23	8	8	59	1.54
13242--13371	20	6.4	20	83	5	172	28	29	18	23	1.98
13242--13350	41	2.7	41	85	8	143	30	28	17	23	1.97
14691--14757	27	2.5	27	97	2	127	34	13	25	26	1.93
16529--16563	18	1.9	18	94	0	61	54	25	2	17	1.57
16620--17181	140	4.0	140	95	0	1018	28	12	14	43	1.83
16620--17181	279	2.0	280	95	0	1018	28	12	14	43	1.83
17152--17464	20	16.6	20	76	13	281	34	22	18	24	1.96
17253--17464	54	3.8	54	78	9	212	34	22	18	24	1.96
17152--17395	94	2.6	93	86	1	346	35	22	17	25	1.95
17449--17513	19	3.4	19	87	4	94	13	20	24	41	1.88
17454--17530	20	3.9	20	87	1	102	12	18	25	42	1.86
18975--19097	42	2.9	42	78	7	142	24	17	35	21	1.95
18975--19092	21	5.6	21	75	0	101	23	17	35	22	1.95
19572--19615	20	2.2	20	87	0	61	50	18	13	18	1.79
19602--19649	20	2.4	20	92	0	78	37	25	20	16	1.93
20130--20170	21	2.0	21	95	0	73	26	36	19	17	1.94
21708--21739	14	2.3	14	94	0	55	50	15	21	12	1.77
22123--22173	22	2.3	22	89	0	75	21	15	41	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22135--22180	22	2.1	22	91	0	74	17	15	45	21	1.85
22340--22411	20	3.6	20	72	7	65	25	19	23	31	1.98
24913--24995	29	2.8	29	92	1	139	43	9	14	32	1.78
29677--29759	29	2.8	29	92	1	139	43	9	14	32	1.78
46431--46669	43	5.6	42	78	10	236	23	17	22	36	1.94
46431--46645	86	2.5	83	82	8	279	22	16	22	37	1.93
50220--50472	125	2.0	124	85	2	337	33	17	16	32	1.92
50307--50573	41	6.4	42	72	14	176	32	19	18	30	1.95
50396--50609	41	5.2	40	70	15	132	31	19	20	28	1.97
50355--50637	83	3.5	82	83	3	304	31	19	19	30	1.96
59980--60013	17	1.9	18	88	5	52	26	23	2	47	1.66
60993--61018	13	2.0	13	100	0	52	61	7	23	7	1.49
63534--63614	32	2.6	32	82	2	92	34	22	13	29	1.92
65610--65728	60	2.0	60	96	0	220	30	23	12	33	1.92

Tables:   1

The End!