Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007689.1 Hibiscus syriacus cultivar Beakdansim tig00109875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104036

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4144--4210
33
2.0
33
94
0
116
41
34
16
7
1.76
8643--8698
19
2.7
21
72
13
62
57
0
1
41
1.09
9010--9045
16
2.2
16
90
9
56
33
0
8
58
1.28
10351--10401
20
2.5
20
93
0
84
19
19
11
49
1.79
10746--10796
22
2.4
22
93
3
86
15
33
29
21
1.94
10802--10863
31
2.0
31
93
0
106
24
37
11
27
1.89
13744--13776
17
2.0
17
88
5
50
30
3
3
63
1.24
20967--21466
227
2.2
226
83
3
614
43
12
11
33
1.78
24463--24775
53
5.9
53
84
2
378
21
26
22
30
1.98
25358--25463
42
2.6
41
78
3
122
29
20
23
26
1.99
35680--35705
4
6.5
4
100
0
52
26
50
0
23
1.50
39665--39743
33
2.4
31
85
12
104
45
1
6
46
1.36
39665--39736
34
2.2
32
88
9
103
45
1
6
45
1.38
41529--41675
64
2.3
65
83
7
174
32
20
17
29
1.95
42334--42441
31
3.5
31
79
3
103
24
18
22
35
1.96
45717--45873
64
2.4
65
84
8
194
35
20
16
28
1.94
46518--46625
31
3.5
31
79
3
103
24
18
22
35
1.96
46540--46646
31
3.5
30
79
6
90
24
18
24
32
1.97
48925--49074
60
2.5
61
83
5
189
16
27
34
22
1.95
49281--49358
30
2.6
30
84
10
88
42
0
0
57
0.98
49363--49399
18
1.9
18
89
10
56
21
5
8
64
1.40
83669--83767
47
2.1
47
81
3
110
31
14
22
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90634--90740
42
2.6
42
83
1
144
25
22
22
29
1.99
90634--90757
42
3.0
42
75
5
117
25
21
23
29
1.99
90518--91052
214
2.5
214
91
1
887
34
14
18
31
1.91
90848--90954
42
2.6
41
78
1
115
27
23
20
28
1.99
91537--91987
53
8.5
53
84
3
543
30
20
26
22
1.99
91537--91943
210
1.9
212
87
4
599
30
20
27
21
1.98
94862--95023
80
2.1
76
87
4
225
35
10
11
42
1.76
95017--95108
47
2.0
46
87
8
132
38
15
9
36
1.80

Tables:   1

The End!