Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000769.1 Hibiscus syriacus cultivar Beakdansim tig00001494_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63929

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2750--2885
28
4.8
29
87
5
181
45
16
5
32
1.70
2753--2885
57
2.4
56
88
5
196
45
15
5
33
1.69
5632--5670
20
2.0
20
85
10
53
61
7
10
20
1.52
6454--6653
21
9.3
22
78
12
154
21
19
20
39
1.93
6463--6653
65
2.9
65
81
9
246
20
19
19
39
1.92
6473--6660
86
2.2
87
89
3
285
21
20
19
38
1.93
6454--6653
107
1.9
106
93
4
348
21
19
20
39
1.93
6746--6799
6
9.5
6
97
2
87
29
53
16
0
1.43
7390--7485
21
4.6
21
80
7
124
29
20
22
27
1.99
7500--7553
21
2.6
21
90
0
81
20
20
27
31
1.97
11478--11517
19
2.1
19
100
0
80
57
10
7
25
1.57
13445--13476
16
2.1
16
94
5
57
18
15
0
65
1.27
17162--17186
13
1.9
13
100
0
50
24
20
32
24
1.98
19409--19462
21
2.6
21
93
0
90
27
31
16
24
1.96
26181--26220
21
1.9
21
94
0
71
30
15
7
47
1.72
26215--26313
33
3.0
33
94
1
164
32
7
15
45
1.73
26299--26353
13
4.2
13
75
13
58
34
3
12
49
1.59
26549--26605
21
2.7
21
91
0
96
19
26
26
28
1.99
26790--26823
18
1.9
18
88
5
52
41
11
8
38
1.73
26771--26826
15
3.6
15
74
9
58
33
12
10
42
1.77
26917--26948
16
2.0
17
88
11
50
43
21
21
12
1.86
29425--29481
24
2.4
24
93
0
96
54
22
0
22
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34622--34646
1
25.0
1
100
0
50
100
0
0
0
0.00
37656--37698
21
2.1
21
91
4
70
34
16
20
27
1.94
39550--39622
21
3.4
21
69
25
62
32
27
19
20
1.97
39535--39600
21
3.0
21
75
20
64
33
27
19
19
1.96
39537--39621
44
1.9
44
90
4
136
31
27
20
21
1.97
46194--46293
21
4.7
22
73
20
88
34
26
19
21
1.96
46936--46995
20
2.8
23
72
23
58
25
31
11
31
1.91
49021--49071
20
2.5
20
93
0
84
25
19
15
39
1.91
49901--49930
16
1.9
16
93
6
53
56
0
33
10
1.32
52829--52872
11
3.9
11
76
5
52
27
22
22
27
1.99
53130--53160
16
1.9
16
100
0
62
6
12
22
58
1.58
54801--54861
23
2.7
22
82
7
68
19
14
9
55
1.67
54812--54863
23
2.2
24
89
3
79
13
15
11
59
1.61
62021--62056
2
19.5
2
83
16
51
50
0
0
50
1.00
62025--62049
13
1.9
13
100
0
50
48
0
0
52
1.00
62021--62056
15
2.6
13
84
16
54
50
0
0
50
1.00
63604--63652
4
11.8
4
78
8
53
6
24
46
22
1.74
63609--63642
13
2.6
13
100
0
68
5
23
47
23
1.73
63605--63653
17
3.1
17
80
19
70
6
22
48
22
1.72

Tables:   1

The End!