genome.fa.s7692.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007692.1 Hibiscus syriacus cultivar Beakdansim tig00109883_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180478

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--77	33	2.3	33	93	0	127	12	20	25	40	1.89
14--102	19	4.9	19	73	15	71	14	21	21	42	1.88
43--102	19	3.1	19	83	4	75	13	23	18	45	1.84
2116--2182	21	3.2	21	66	6	55	23	35	20	19	1.95
2060--2182	42	2.9	42	80	4	106	23	35	17	22	1.95
3522--3557	14	2.6	14	95	0	63	30	0	25	44	1.54
4584--4627	22	2.0	22	95	0	79	18	15	45	20	1.85
4813--4862	20	2.5	20	93	0	82	24	18	28	30	1.97
4793--4907	20	5.7	20	76	5	79	23	16	24	35	1.95
4833--4910	41	1.9	41	83	0	102	21	15	23	39	1.91
4896--4991	41	2.3	41	96	0	138	18	22	17	40	1.91
4896--4988	20	4.6	20	75	4	87	18	23	18	39	1.92
6318--6397	35	2.3	35	80	0	88	42	31	1	25	1.63
9048--9301	125	2.0	125	87	6	359	50	14	13	20	1.77
11498--11560	29	2.2	29	88	5	94	25	6	15	52	1.66
13555--13599	21	2.2	21	88	4	65	42	2	6	48	1.41
14420--14486	26	2.6	26	78	21	70	50	2	7	38	1.46
27757--27805	13	3.8	13	82	12	66	38	0	2	59	1.09
27757--27809	25	2.0	27	82	7	65	43	0	1	54	1.11
27798--27845	20	2.4	19	83	10	60	50	0	2	47	1.12
29486--29540	26	2.1	26	83	12	69	27	1	54	16	1.52
29557--29596	20	2.0	20	85	9	55	32	20	30	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34333--34368	17	2.1	17	89	0	54	33	16	22	27	1.95
36792--36865	37	2.0	37	97	0	139	39	22	18	18	1.93
39035--39096	14	4.4	14	76	13	65	14	11	16	58	1.64
39308--39383	24	3.2	24	92	0	116	13	10	18	57	1.63
40274--40365	22	4.2	22	87	0	112	51	16	13	19	1.77
41217--41264	25	1.9	25	86	0	69	47	6	10	35	1.63
42854--42912	16	3.4	16	75	20	55	32	20	18	28	1.96
42844--42896	21	2.6	21	85	11	74	26	20	22	30	1.98
47026--47125	47	2.1	47	84	0	128	53	5	7	35	1.50
53563--53611	14	3.1	16	77	14	57	24	8	18	48	1.75
60760--60807	23	2.1	23	92	0	78	35	8	18	37	1.81
61078--61129	20	2.6	20	78	0	68	13	15	13	57	1.65
61070--61899	182	4.6	182	91	0	1327	27	16	12	43	1.84
61770--62230	111	4.1	112	92	0	746	26	14	13	45	1.82
63535--63739	82	2.5	82	81	4	234	29	16	21	32	1.96
64207--64256	22	2.3	22	89	0	73	40	10	14	36	1.79
65425--65515	42	2.1	43	81	2	103	32	7	19	39	1.80
66904--66946	22	2.0	22	95	0	77	44	4	16	34	1.68
74242--74310	23	3.0	23	76	0	75	33	24	23	18	1.97
78681--78717	19	1.9	19	100	0	74	21	35	16	27	1.94
80838--80919	33	2.5	34	80	6	87	19	32	32	14	1.92
81571--81609	19	2.1	19	85	0	51	66	0	2	30	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82319--82365	20	2.3	21	88	3	69	59	17	17	6	1.57
83232--83261	14	2.1	14	100	0	60	16	20	16	46	1.84
85157--85272	35	3.4	34	68	20	87	40	3	9	46	1.53
85142--85340	69	2.9	69	81	4	233	40	4	8	47	1.52
85113--85339	69	3.3	69	77	7	221	40	4	8	46	1.55
88466--88521	21	2.8	20	92	7	96	21	35	16	26	1.94
92027--92132	36	2.9	36	95	0	194	33	25	24	16	1.96
96288--96350	6	10.5	6	91	0	72	20	25	47	6	1.73
96288--96350	24	2.6	24	94	0	108	20	25	47	6	1.73
98453--98487	3	12.0	3	87	6	54	34	0	0	65	0.93
98437--98486	17	3.1	17	88	5	68	30	0	0	70	0.88
101656--101709	28	1.9	28	92	0	90	16	12	11	59	1.61
103659--103708	25	2.0	25	88	0	73	68	14	14	4	1.36
103669--103744	30	2.5	31	79	12	86	71	9	18	1	1.20
103717--103769	23	2.3	23	87	6	72	81	5	13	0	0.86
103687--103819	33	4.0	34	75	15	91	76	7	14	1	1.07
103691--103815	17	6.6	19	75	16	84	76	7	14	1	1.06
103747--103815	28	2.7	25	75	18	61	79	5	11	2	1.01
103721--103808	7	12.4	7	72	14	65	80	5	11	2	0.97
103721--103821	13	7.9	12	73	22	66	80	6	10	1	0.98
103687--103823	20	7.3	19	73	14	90	76	7	14	1	1.06
104685--104750	23	2.9	23	76	19	66	33	9	4	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104686--104741	24	2.4	24	80	17	64	33	8	3	53	1.49
104858--104939	33	2.5	33	88	2	112	32	19	20	26	1.97
105230--105329	36	2.8	35	89	3	137	36	21	11	32	1.88
105234--105294	21	3.2	20	65	26	51	36	21	9	32	1.86
105737--105815	31	2.5	31	84	11	92	30	18	13	36	1.90
105756--105815	31	1.9	31	89	3	93	28	20	13	38	1.90
105682--105876	97	2.0	98	80	8	220	26	22	15	35	1.94
105878--106264	134	2.9	128	80	9	429	25	30	18	25	1.98
109525--109571	23	2.0	23	83	0	58	31	6	14	46	1.70
109872--109990	3	39.7	3	93	0	202	34	2	0	63	1.08
112116--112166	18	2.9	17	72	18	50	25	0	1	72	0.95
112157--112193	15	2.7	15	88	12	53	24	5	8	62	1.44
124787--124839	20	2.7	20	90	0	79	39	13	18	28	1.88
124831--124910	20	4.0	20	90	0	115	26	26	20	27	1.99
125713--125766	24	2.2	24	90	0	81	24	16	16	42	1.88
125956--125992	14	2.6	14	91	4	56	51	21	18	8	1.72
128029--128063	18	1.9	18	88	0	52	54	22	2	20	1.58
128123--128392	140	1.9	140	95	0	486	28	12	15	43	1.83
128363--128616	20	13.9	20	74	15	151	34	21	18	25	1.96
128388--128540	49	3.0	49	79	10	146	37	23	17	21	1.94
128371--128577	54	3.9	54	79	10	239	35	23	17	23	1.96
128474--128656	94	1.9	94	93	0	312	33	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128363--128665	34	8.3	40	71	18	182	34	21	18	25	1.96
128659--128697	20	2.0	20	94	0	69	7	20	25	46	1.77
128811--128872	14	4.3	14	77	6	61	46	14	0	38	1.45
130254--130354	21	4.8	21	73	7	80	22	18	35	22	1.96
130243--130354	42	2.7	42	77	5	111	22	17	37	22	1.94
130840--130906	20	3.5	19	88	8	91	37	26	17	17	1.93
130850--130906	20	2.8	20	94	0	96	36	24	19	19	1.94
130931--130982	20	2.6	20	87	0	77	19	21	25	34	1.96
132859--132953	20	4.8	20	84	1	102	44	22	17	15	1.87
132859--132964	20	5.4	19	82	7	97	44	22	16	16	1.86
133572--133669	20	4.9	20	89	0	133	26	17	26	29	1.97
133565--133760	20	9.6	20	74	9	121	30	18	23	27	1.98
136060--136108	20	2.5	20	96	0	89	10	44	12	32	1.75
136342--136394	24	2.2	25	87	9	76	24	3	3	67	1.23
140708--140787	39	2.1	39	88	4	117	31	27	20	21	1.98
149205--149253	20	2.5	20	96	0	89	10	44	12	32	1.75
149452--149540	24	3.8	23	65	17	58	21	2	5	70	1.18
149489--149538	23	2.2	23	92	3	84	24	2	4	70	1.15
153195--153249	29	2.0	29	85	7	78	34	1	3	60	1.25
174719--174761	20	2.1	21	82	4	52	55	0	0	44	0.99
176101--176136	13	2.9	13	92	8	58	88	5	0	5	0.61
176105--176143	21	1.9	21	89	5	62	92	2	0	5	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176105--176143	1	39.0	1	84	0	51	92	2	0	5	0.46
177515--177596	43	1.9	43	87	5	121	50	7	1	41	1.38

Tables:   1

The End!