genome.fa.s7693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007693.1 Hibiscus syriacus cultivar Beakdansim tig00109890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167376

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1421--1470	24	2.1	24	85	7	66	60	12	2	26	1.43
3631--3659	12	2.3	13	94	5	51	48	20	6	24	1.74
3859--4000	3	46.0	3	94	5	248	0	67	0	32	0.91
6750--6783	2	17.0	2	100	0	68	50	0	0	50	1.00
11309--11377	18	3.8	18	72	14	61	31	1	0	66	1.00
11308--11385	18	4.3	17	71	26	54	30	2	0	66	1.05
25217--25241	12	2.1	12	100	0	50	32	24	16	28	1.96
25609--25734	47	2.8	45	85	5	164	30	22	7	39	1.82
25839--26080	40	6.1	40	95	0	412	30	26	18	24	1.97
32546--32771	124	1.8	124	80	3	276	33	15	17	33	1.91
35355--35661	43	7.1	43	77	8	250	27	20	19	32	1.97
43176--43201	6	4.3	6	100	0	52	19	15	34	30	1.93
45418--45463	23	2.0	24	82	4	58	17	4	13	65	1.42
47330--47395	25	2.7	25	95	2	116	36	36	18	9	1.82
56991--57028	20	1.9	20	88	0	58	13	2	5	78	1.02
56991--57018	14	2.0	14	100	0	56	14	0	7	78	0.95
79033--79282	81	3.1	81	91	1	403	24	23	13	38	1.91
79420--80030	54	11.3	54	86	2	739	27	20	18	33	1.96
79420--80030	109	5.7	109	84	3	745	27	20	18	33	1.96
84570--84819	81	3.1	80	87	2	356	26	23	10	38	1.88
84957--85678	55	13.3	55	84	3	892	27	20	18	33	1.96
84957--85676	109	6.6	108	86	2	901	27	20	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84957--85655	164	4.3	163	87	2	1005	27	20	18	33	1.96
87550--87618	10	7.1	10	79	12	81	18	21	30	28	1.97
87550--87620	19	3.7	19	92	1	106	18	23	29	28	1.98
87614--87671	17	3.4	17	97	0	107	17	43	24	15	1.87
87661--87701	6	6.0	7	86	13	59	14	31	29	24	1.95
87661--87700	13	3.0	13	96	3	71	15	32	30	22	1.94
88469--88543	31	2.4	30	80	4	87	14	25	32	28	1.95
88469--88590	62	2.0	62	80	9	142	16	27	29	26	1.97
94746--94810	18	3.5	19	87	10	91	15	24	35	24	1.94
94803--94882	13	5.5	15	85	11	80	17	36	28	17	1.93
94845--94887	7	6.4	7	89	10	72	16	30	30	23	1.96
94845--94887	20	2.2	20	91	8	70	16	30	30	23	1.96
99289--99360	23	3.1	23	80	9	92	26	22	25	26	2.00
99339--99375	17	2.2	17	95	0	65	27	29	16	27	1.97
99362--99419	12	4.9	12	76	4	55	36	27	13	22	1.92
99777--99867	30	2.9	30	93	4	146	40	17	14	27	1.88
101169--101484	158	2.0	158	99	0	623	18	12	40	28	1.87
101955--102025	7	10.3	7	76	3	54	21	1	30	46	1.60
101955--102024	27	2.5	28	88	9	108	21	1	31	45	1.60
102004--102381	151	2.5	154	90	3	593	26	6	23	43	1.78
102247--102332	7	12.7	7	70	7	61	19	1	37	41	1.59
102467--102507	14	3.1	14	76	20	52	39	0	4	56	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106895--106939	2	22.5	2	100	0	90	48	0	0	51	1.00
107311--107354	6	6.6	7	89	10	58	84	0	15	0	0.63
107313--107348	6	5.8	6	93	6	63	86	0	13	0	0.58
108961--109035	2	37.5	2	100	0	150	49	0	0	50	1.00
109489--109548	24	2.6	23	84	7	77	10	21	20	48	1.78
109999--110045	17	2.9	16	84	12	60	44	0	2	53	1.12
110545--110587	18	2.4	18	84	3	52	60	4	4	30	1.37
112170--112743	2	288.0	2	77	0	378	36	48	13	0	1.49
115869--115915	14	3.6	14	75	16	55	59	6	6	27	1.46
120894--120927	16	2.1	17	88	5	52	44	2	17	35	1.64
121747--121804	27	2.1	27	83	0	71	24	39	12	24	1.89
122612--122650	20	1.9	21	94	5	71	41	28	7	23	1.82
125211--125283	32	2.3	32	90	0	110	34	17	16	31	1.93
126545--126583	18	2.1	19	85	4	53	53	10	25	10	1.66
133463--133507	21	2.1	21	92	8	74	42	2	11	44	1.52
135443--135482	21	1.9	21	90	10	64	42	2	10	45	1.51
145185--145260	29	2.6	29	78	0	80	18	35	30	15	1.92
145316--145360	22	2.0	22	95	0	81	13	33	28	24	1.93
146273--146331	31	1.9	31	92	0	100	40	6	10	42	1.65
146356--146398	22	2.0	22	95	0	77	53	11	2	32	1.50
146358--146406	22	2.2	22	85	3	62	57	12	2	28	1.46
146346--147464	54	20.6	54	70	16	398	52	13	0	33	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146361--147404	80	12.8	80	80	10	1006	52	13	0	33	1.43
146412--146486	22	3.2	23	71	17	73	54	14	0	30	1.41
146458--146741	32	9.7	32	76	19	307	52	11	0	35	1.38
146571--146623	14	3.5	14	72	18	52	56	5	0	37	1.23
146614--146662	22	2.2	22	85	3	62	55	12	0	32	1.37
146666--146708	22	2.0	22	100	0	86	51	13	0	34	1.42
146668--146716	22	2.2	22	88	3	71	55	14	0	30	1.40
146880--146922	22	2.0	22	100	0	86	51	13	0	34	1.42
146882--146930	22	2.2	22	88	3	71	55	14	0	30	1.40
146490--147168	268	2.5	268	93	2	1151	51	13	0	34	1.42
146924--146967	22	2.0	22	82	8	54	54	4	0	40	1.21
146934--146976	22	2.0	22	95	0	77	51	11	0	37	1.39
146936--146984	22	2.2	22	85	3	62	55	12	0	32	1.37
146992--147065	22	3.2	22	69	23	62	52	17	0	29	1.45
147068--147138	22	3.0	22	80	10	79	50	15	0	33	1.44
147093--147145	22	2.5	21	73	11	54	52	11	0	35	1.37
147233--147305	22	3.3	22	66	19	53	54	16	0	28	1.42
147313--147385	22	3.3	22	69	16	53	54	16	0	28	1.42
147391--147438	22	2.2	22	84	0	60	58	12	0	29	1.35
147463--147535	15	4.9	15	94	0	128	45	0	0	54	0.99
147966--148343	187	2.0	184	91	3	623	41	3	8	45	1.53
148783--148811	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153927--154217	153	1.9	153	90	0	465	35	16	9	39	1.81
154687--154866	37	4.8	38	79	3	195	43	2	6	47	1.44
154687--154866	75	2.4	75	77	6	186	43	2	6	47	1.44
158056--158727	55	12.2	55	89	1	981	30	23	13	31	1.93
159760--159786	10	2.7	10	100	0	54	18	0	0	81	0.69
159759--159813	18	3.1	18	82	10	67	10	10	0	78	0.98
163178--163205	8	3.5	8	100	0	56	50	10	0	39	1.37

Tables:   1

The End!