Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007694.1 Hibiscus syriacus cultivar Beakdansim tig00109891_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 79303
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Found at i:1438 original size:14 final size:14
Alignment explanation
Indices: 1417--1452 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
1407 TAATTATTTC
1417 AAAG-TAATCTAAT
1 AAAGTTAATCTAAT
1430 AAAGTTAATCTAAT
1 AAAGTTAATCTAAT
1444 AAAGTTAAT
1 AAAGTTAAT
1453 AATCAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (14 bp):
AAAGTTAATCTAAT
Found at i:8990 original size:9 final size:9
Alignment explanation
Indices: 8978--9051 Score: 62
Period size: 8 Copynumber: 7.8 Consensus size: 9
8968 AAGGAAAAAG
*
8978 AATAACATA
1 AATAAAATA
8987 AATAAAATAA
1 AATAAAAT-A
8997 AAGTAAAAATAA
1 AA-T-AAAAT-A
*
9009 GAATAAAACA
1 -AATAAAATA
9019 AGATAAAATA
1 A-ATAAAATA
9029 AAT-AAATA
1 AATAAAATA
9037 AAT-AAATA
1 AATAAAATA
9045 AATAAAA
1 AATAAAA
9052 CAAAACGAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
8 16 0.29
9 13 0.23
10 12 0.21
11 5 0.09
12 8 0.14
13 2 0.04
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (9 bp):
AATAAAATA
Found at i:9013 original size:6 final size:5
Alignment explanation
Indices: 8986--9056 Score: 53
Period size: 5 Copynumber: 14.6 Consensus size: 5
8976 AGAATAACAT
* *
8986 AAATA AAATA AAAGTAA AAATA AGAATA AAACA AGATA AAAT- AAAT-
1 AAATA AAATA AAA-T-A AAATA A-AATA AAATA AAATA AAATA AAATA
*
9032 AAAT- AAAT- AAAT- AAATA AAACA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
9057 CGAAACAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
4 20 0.35
5 26 0.46
6 7 0.12
7 4 0.07
ACGTcount: A:0.76, C:0.03, G:0.04, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:9033 original size:4 final size:4
Alignment explanation
Indices: 9024--9050 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
9014 AAACAAGATA
9024 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
9051 ACAAAACGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:12148 original size:11 final size:11
Alignment explanation
Indices: 12132--12157 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
12122 ACCCACCTTA
12132 TTTTCTTTTCT
1 TTTTCTTTTCT
12143 TTTTCTTTTCT
1 TTTTCTTTTCT
12154 TTTT
1 TTTT
12158 TCAATTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTCTTTTCT
Found at i:12258 original size:75 final size:76
Alignment explanation
Indices: 12128--12267 Score: 176
Period size: 75 Copynumber: 1.9 Consensus size: 76
12118 TTGAACCCAC
* * * * * * * *
12128 CTTATTTTCTTTTCTTTTTCTTTTCTTTTTTCAATTTAGGGCGCCCTTTCGGGTTTTCAGCCTAA
1 CTTATTTTCCTTTCTTTTTCTTTTCTCTTTTCAACTTAGGACACCCTCTCAGGTTTCCAGCCTAA
12193 ATATTTTTTCT
66 ATATTTTTTCT
*
12204 CTTATTTTCCTTT-TTTTTCTTTT-TCCTTTTCAACTTAGGACACCCTCTCAGGTTTCCATCCTA
1 CTTATTTTCCTTTCTTTTTCTTTTCT-CTTTTCAACTTAGGACACCCTCTCAGGTTTCCAGCCTA
12267 A
65 A
12268 GCGAAGTATT
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
74 1 0.02
75 41 0.76
76 12 0.22
ACGTcount: A:0.14, C:0.24, G:0.09, T:0.54
Consensus pattern (76 bp):
CTTATTTTCCTTTCTTTTTCTTTTCTCTTTTCAACTTAGGACACCCTCTCAGGTTTCCAGCCTAA
ATATTTTTTCT
Found at i:18828 original size:21 final size:21
Alignment explanation
Indices: 18803--18843 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18793 CCCCTTTGAC
* *
18803 CAGCTTCATTTGGTCTTCCAA
1 CAGCTTAATTTGCTCTTCCAA
*
18824 CAGCTTAATTTTCTCTTCCA
1 CAGCTTAATTTGCTCTTCCA
18844 TCTCTTTCAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.29, G:0.10, T:0.41
Consensus pattern (21 bp):
CAGCTTAATTTGCTCTTCCAA
Found at i:21568 original size:13 final size:13
Alignment explanation
Indices: 21550--21574 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21540 CAAATGCTAA
21550 AAAGAAAAACATG
1 AAAGAAAAACATG
21563 AAAGAAAAACAT
1 AAAGAAAAACAT
21575 TAGTAAGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.12, T:0.08
Consensus pattern (13 bp):
AAAGAAAAACATG
Found at i:22769 original size:24 final size:24
Alignment explanation
Indices: 22732--22799 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
22722 AGCCAAATAA
22732 ATTAAAACAATAAAATAAT-AAAAG
1 ATTAAAACAATAAAA-AATAAAAAG
* *
22756 ATTAAAAGATTAAAAAATGAAAAAG
1 ATTAAAACAATAAAAAAT-AAAAAG
* *
22781 A-TAAAATAA-ATAAAATAAA
1 ATTAAAACAATAAAAAATAAA
22800 GATAAAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
22 3 0.08
23 9 0.24
24 19 0.51
25 6 0.16
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21
Consensus pattern (24 bp):
ATTAAAACAATAAAAAATAAAAAG
Found at i:22779 original size:9 final size:8
Alignment explanation
Indices: 22734--22848 Score: 54
Period size: 8 Copynumber: 13.6 Consensus size: 8
22724 CCAAATAAAT
*
22734 TAAAACAA
1 TAAAAAAA
*
22742 TAAAATAA
1 TAAAAAAA
*
22750 T-AAAAGA
1 TAAAAAAA
* *
22757 TTAAAAGA
1 TAAAAAAA
*
22765 TTAAAAAA
1 TAAAAAAA
*
22773 TGAAAAAGA
1 T-AAAAAAA
22782 TAAAATAAA
1 TAAAA-AAA
22791 TAAAATAAA
1 TAAAA-AAA
* *
22800 GATAAAAA
1 TAAAAAAA
22808 TAAAACAAGA
1 TAAAA-AA-A
*
22818 TATAATAAA
1 TA-AAAAAA
22827 TAAATAAAA
1 TAAA-AAAA
22836 -AAACAAAA
1 TAAA-AAAA
22844 TAAAA
1 TAAAA
22849 TAAAGGAAAA
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
7 5 0.06
8 42 0.49
9 31 0.36
10 5 0.06
11 2 0.02
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (8 bp):
TAAAAAAA
Found at i:22795 original size:17 final size:17
Alignment explanation
Indices: 22759--22848 Score: 62
Period size: 17 Copynumber: 5.1 Consensus size: 17
22749 ATAAAAGATT
* *
22759 AAAAGATTAAAAAATGA
1 AAAAGATAAAAAAATAA
22776 AAAAGATAAAATAAATAAA
1 AAAAGATAAAA-AAAT-AA
22795 ATAAAGAT--AAAAATAA
1 A-AAAGATAAAAAAATAA
*
22811 AACAAGATATAATAAATAA
1 AA-AAGATA-AAAAAATAA
22830 ATAAA-A-AAACAAAATAA
1 A-AAAGATAAA-AAAATAA
22847 AA
1 AA
22849 TAAAGGAAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
15 1 0.02
16 11 0.18
17 22 0.37
18 7 0.12
19 12 0.20
20 7 0.12
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.17
Consensus pattern (17 bp):
AAAAGATAAAAAAATAA
Found at i:22796 original size:5 final size:5
Alignment explanation
Indices: 22781--22852 Score: 55
Period size: 5 Copynumber: 15.0 Consensus size: 5
22771 AATGAAAAAG
* * *
22781 ATAAA AT-AA ATAAA ATAAA GATAAAA ATAAA ACAAG ATATA AT-AA AT-AA
1 ATAAA ATAAA ATAAA ATAAA -AT-AAA ATAAA ATAAA ATAAA ATAAA ATAAA
*
22830 AT-AA A-AAA ACAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
22853 GGAAAAACAA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
4 17 0.31
5 31 0.56
6 4 0.07
7 3 0.05
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (5 bp):
ATAAA
Found at i:22818 original size:36 final size:34
Alignment explanation
Indices: 22767--22848 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 34
22757 TTAAAAGATT
* *
22767 AAAAAATGAAAAAGATAAAATAAATAAAATAAAGA
1 AAAAAATAAAAAAGATAAAATAAAT-AAATAAAAA
* *
22802 TAAAAATAAAACAAGATATAATAAATAAATAAAAA
1 AAAAAATAAAA-AAGATAAAATAAATAAATAAAAA
22837 AACAAAATAAAA
1 AA-AAAATAAAA
22849 TAAAGGAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
35 18 0.45
36 22 0.55
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (34 bp):
AAAAAATAAAAAAGATAAAATAAATAAATAAAAA
Found at i:22819 original size:16 final size:17
Alignment explanation
Indices: 22788--22870 Score: 64
Period size: 17 Copynumber: 4.8 Consensus size: 17
22778 AAGATAAAAT
22788 AAATAAAATAAAGATAA
1 AAATAAAATAAAGATAA
* *
22805 AAATAAAACAAGATATAA
1 AAATAAAATAA-AGATAA
* *
22823 TAAAT-AAATAAAAAAACA
1 -AAATAAAATAAAGATA-A
22841 AAATAAAATAAAGGA-AA
1 AAATAAAATAAA-GATAA
22858 AACA-AAAATAAAG
1 AA-ATAAAATAAAG
22871 GAAAAACGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
16 1 0.02
17 28 0.52
18 20 0.37
19 5 0.09
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.14
Consensus pattern (17 bp):
AAATAAAATAAAGATAA
Found at i:22845 original size:21 final size:21
Alignment explanation
Indices: 22821--22869 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
22811 AACAAGATAT
22821 AATAAATAAATAAAAAAAC-AA
1 AATAAATAAA-AAAAAAACAAA
**
22842 AATAAAATAAAGGAAAAACAAA
1 AAT-AAATAAAAAAAAAACAAA
22864 AATAAA
1 AATAAA
22870 GGAAAAACGT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.80, C:0.04, G:0.04, T:0.12
Consensus pattern (21 bp):
AATAAATAAAAAAAAAACAAA
Found at i:22865 original size:17 final size:17
Alignment explanation
Indices: 22845--22877 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
22835 AAAACAAAAT
22845 AAAATAAAGGAAAAACA
1 AAAATAAAGGAAAAACA
22862 AAAATAAAGGAAAAAC
1 AAAATAAAGGAAAAAC
22878 GTAATGGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (17 bp):
AAAATAAAGGAAAAACA
Found at i:26568 original size:19 final size:18
Alignment explanation
Indices: 26537--26575 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
26527 ATTTATAACA
* *
26537 TTTTAGATCGCAACCTAC
1 TTTTAGATAGCAACCAAC
26555 TTTTCAGATAGCAACCAAC
1 TTTT-AGATAGCAACCAAC
26574 TT
1 TT
26576 ATTTTGTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (18 bp):
TTTTAGATAGCAACCAAC
Found at i:31846 original size:15 final size:15
Alignment explanation
Indices: 31820--31875 Score: 96
Period size: 15 Copynumber: 3.8 Consensus size: 15
31810 TTTCTTGTTT
*
31820 TTCTTC-TCTTCACA
1 TTCTTCATCTTCACC
31834 TTCTTCATCTTCACC
1 TTCTTCATCTTCACC
31849 TTCTTCATCTTCACC
1 TTCTTCATCTTCACC
31864 TTCTTCATCTTC
1 TTCTTCATCTTC
31876 GTTCAACATG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
14 6 0.15
15 34 0.85
ACGTcount: A:0.12, C:0.38, G:0.00, T:0.50
Consensus pattern (15 bp):
TTCTTCATCTTCACC
Found at i:36303 original size:18 final size:18
Alignment explanation
Indices: 36277--36316 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
36267 CTATTATCAC
36277 TGATGAGTCAACCTCAAT
1 TGATGAGTCAACCTCAAT
* *
36295 TGATTAGTCAACCTTAAT
1 TGATGAGTCAACCTCAAT
36313 TGAT
1 TGAT
36317 AATCACCGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (18 bp):
TGATGAGTCAACCTCAAT
Found at i:36778 original size:46 final size:46
Alignment explanation
Indices: 36629--36982 Score: 538
Period size: 46 Copynumber: 7.8 Consensus size: 46
36619 AATTTCATTT
*
36629 TGGCATCCTTTCATGTCTTAATGCATCCTTTCATGCATTTTAGTTA
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
* * *
36675 TGGC-TCCTGTCATACCTTAATGCATCATTTCATGCA-TTTAGTTGA
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTT-A
*
36720 -GGCAACCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
*
36765 TGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTA
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
* *
36811 TGGCATCCTTTCATGCCTTAATGCAT-CTTTTATGTATTTTAGTTA
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
* * * *
36856 TGGTATCC-TTCATGCCTTAATGCACCCCTTCATGCATGTTAGTTA
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
*
36901 TGGCATCATTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
*
36947 TGACATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
36983 CTTAATGCAT
Statistics
Matches: 276, Mismatches: 26, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
44 26 0.09
45 102 0.37
46 148 0.54
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTA
Found at i:36873 original size:136 final size:137
Alignment explanation
Indices: 36629--36982 Score: 536
Period size: 136 Copynumber: 2.6 Consensus size: 137
36619 AATTTCATTT
* * *
36629 TGGCATCCTTTCATGTCTTAATGCATCCTTTCATGCATTTTAGTTATGGC-TCCTGTCATACCTT
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTT
* * *
36693 AATGCATCATTTCATGCATTTAGTTGAGGCAACCTTTCATGCCTTAATGCATCCTTTCATGCATT
66 AATGCATCATTTCATGCATTTAGTTGAGGCAACCTTTCATGCCTTAATGCACCCCTTCATGCATG
36758 TTAGTTA
131 TTAGTTA
*
36765 TGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTT
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTT
* * * *
36830 AATGCATC-TTTTATGTATTTTAGTT-ATGGTATCC-TTCATGCCTTAATGCACCCCTTCATGCA
66 AATGCATCATTTCATGCA-TTTAGTTGA-GGCAACCTTTCATGCCTTAATGCACCCCTTCATGCA
36892 TGTTAGTTA
129 TGTTAGTTA
* *
36901 TGGCATCATTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTTTCATGCCTT
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTT
*
36966 AATGCATCCTTTCATGC
66 AATGCATCATTTCATGC
36983 CTTAATGCAT
Statistics
Matches: 198, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
136 160 0.81
137 38 0.19
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (137 bp):
TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGCATCCTTTCATGCCTT
AATGCATCATTTCATGCATTTAGTTGAGGCAACCTTTCATGCCTTAATGCACCCCTTCATGCATG
TTAGTTA
Found at i:36936 original size:182 final size:182
Alignment explanation
Indices: 36629--36982 Score: 552
Period size: 182 Copynumber: 1.9 Consensus size: 182
36619 AATTTCATTT
* *
36629 TGGCATCCTTTCATGTCTTAATGCATCCTTTCATGCATTTTAGTTATGGCTCCTGTCATACCTTA
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGATCCTGTCATACCTTA
* * *
36694 ATGCATCATTTCATGCATTTAGTTGAGGCAACCTTTCATGCCTTAATGCATCCTTTCATGCATTT
66 ATGCACCACTTCATGCATTTAGTTGAGGCAACATTTCATGCCTTAATGCATCCTTTCATGCATTT
*
36759 TAGTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTA
131 TAGTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTA
* * *
36811 TGGCATCCTTTCATGCCTTAATGCAT-CTTTTATGTATTTTAGTTATGGTATCCT-TCATGCCTT
1 TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGG-ATCCTGTCATACCTT
* *
36874 AATGCACCCCTTCATGCATGTTAGTT-ATGGCATCATTTCATGCCTTAATGCATCCTTTCATGCA
65 AATGCACCACTTCATGCAT-TTAGTTGA-GGCAACATTTCATGCCTTAATGCATCCTTTCATGCA
*
36938 TTTTAGTTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGC
128 TTTTAGTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGC
36983 CTTAATGCAT
Statistics
Matches: 157, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
181 45 0.29
182 112 0.71
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (182 bp):
TGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGGATCCTGTCATACCTTA
ATGCACCACTTCATGCATTTAGTTGAGGCAACATTTCATGCCTTAATGCATCCTTTCATGCATTT
TAGTTATGACATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTA
Found at i:37002 original size:20 final size:20
Alignment explanation
Indices: 36631--37002 Score: 165
Period size: 20 Copynumber: 16.7 Consensus size: 20
36621 TTTCATTTTG
*
36631 GCATCCTTTCATGTCTTAAT
1 GCATCCTTTCATGCCTTAAT
*
36651 GCATCCTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
* *
36676 GGC-TCCTGTCATACCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* * *
36696 GCATCATTTCATGCATTTAGTTGAG
1 GCATCCTTTCATGC-CTTA----AT
*
36721 GCAACCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
*
36741 GCATCCTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
36766 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* *
36787 GCATCATTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
36812 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* **
36833 GCAT-CTTTTATGTATTTTAGTTAT
1 GCATCCTTTCATG--CCTTA---AT
*
36857 GGTATCC-TTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* * *
36877 GCACCCCTTCATGCATGTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
*
36902 GGCATCATTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
36923 GCATCCTTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
36948 GACATCCTTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
36969 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
*
36989 GCATCATTTCATGC
1 GCATCCTTTCATGC
37003 ATTTTAGTTA
Statistics
Matches: 269, Mismatches: 39, Indels: 88
0.68 0.10 0.22
Matches are distributed among these distances:
19 13 0.05
20 108 0.40
21 15 0.06
22 15 0.06
23 6 0.02
24 17 0.06
25 41 0.15
26 54 0.20
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.42
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:37230 original size:20 final size:20
Alignment explanation
Indices: 37201--37434 Score: 132
Period size: 20 Copynumber: 10.7 Consensus size: 20
37191 ACTAATTATG
37201 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
* *
37221 GCATCATTTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
37246 GGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* **
37267 GCAT-CTTTTATGTATTTTAGTTAT
1 GCATCCTTTCATG--CCTTA---AT
37291 AGCATCCTTTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
* * *
37312 GCACCCCTTCATGCATGTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
*
37337 GGCAT-CATTCATGCCTTAAT
1 -GCATCCTTTCATGCCTTAAT
*
37357 GCATCC-TTCATGCATTTTAGTTAT
1 GCATCCTTTCATGC--CTTA---AT
37381 GACATCCTTTCATGCCTTAAT
1 G-CATCCTTTCATGCCTTAAT
37402 GCATCCTTTCATGCCTTAAT
1 GCATCCTTTCATGCCTTAAT
*
37422 GCATCATTTCATG
1 GCATCCTTTCATG
37435 TATTTTAGTT
Statistics
Matches: 168, Mismatches: 19, Indels: 54
0.70 0.08 0.22
Matches are distributed among these distances:
19 18 0.11
20 63 0.38
21 13 0.08
22 6 0.04
23 3 0.02
24 14 0.08
25 21 0.12
26 30 0.18
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (20 bp):
GCATCCTTTCATGCCTTAAT
Found at i:37299 original size:45 final size:45
Alignment explanation
Indices: 37196--37415 Score: 325
Period size: 45 Copynumber: 4.8 Consensus size: 45
37186 TCCCCACTAA
*
37196 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATC-CTTCATGCATTTTAG
* * *
37242 TTATGGCATCCTTTCATGCCTTAATGCATCTTTTATGTATTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTCATGCATTTTAG
* * *
37287 TTATAGCATCCTTTCATGCCTTAATGCACCCCTTCATGCATGTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCA-TCCTTCATGCATTTTAG
*
37333 TTATGGCAT-CATTCATGCCTTAATGCATCCTTCATGCATTTTAG
1 TTATGGCATCCTTTCATGCCTTAATGCATCCTTCATGCATTTTAG
*
37377 TTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 TTATGGCATCCTTTCATGCCTTAATGCATCC-TTCATGC
37416 CTTAATGCAT
Statistics
Matches: 157, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
44 23 0.15
45 77 0.49
46 57 0.36
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (45 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCCTTCATGCATTTTAG
Found at i:37386 original size:25 final size:24
Alignment explanation
Indices: 37219--37395 Score: 78
Period size: 26 Copynumber: 7.6 Consensus size: 24
37209 TCATGCCTTA
* *
37219 ATGCATCATTTCATGCATTTTAGTT
1 ATGCATC-CTTCATGCATCTTAGTT
37244 ATGGCATCCTTTCATGC--CTTA---
1 AT-GCATCC-TTCATGCATCTTAGTT
* * * *
37265 ATGCATCTTTTATGTATTTTAGTT
1 ATGCATCCTTCATGCATCTTAGTT
37289 ATAGCATCCTTTCATGC--CTTA---
1 AT-GCATCC-TTCATGCATCTTAGTT
* *
37310 ATGCACCCCTTCATGCATGTTAGTT
1 ATGCA-TCCTTCATGCATCTTAGTT
*
37335 ATGGCATCATTCATGC--CTTA---
1 AT-GCATCCTTCATGCATCTTAGTT
*
37355 ATGCATCCTTCATGCATTTTAGTT
1 ATGCATCCTTCATGCATCTTAGTT
37379 ATGACATCCTTTCATGC
1 ATG-CATCC-TTCATGC
37396 CTTAATGCAT
Statistics
Matches: 112, Mismatches: 17, Indels: 45
0.64 0.10 0.26
Matches are distributed among these distances:
19 17 0.15
20 17 0.15
21 12 0.11
22 3 0.03
23 3 0.03
24 11 0.10
25 22 0.20
26 27 0.24
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (24 bp):
ATGCATCCTTCATGCATCTTAGTT
Found at i:37590 original size:433 final size:434
Alignment explanation
Indices: 36762--37629 Score: 1636
Period size: 433 Copynumber: 2.0 Consensus size: 434
36752 TGCATTTTAG
36762 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGC
* *
36827 CTTAATGCATCTTTTATGTATTTTAGTTATGGTATCCTTCATGCCTTAATGCACCCCTTCATGCA
66 CTTAATGCATCTTTTATGTATTTTAGTTATAGCATCCTTCATGCCTTAATGCACCCCTTCATGCA
36892 TGTTAGTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTT
131 TGTTAGTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTT
36957 TCATGCCTTAATGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGATTCAT
196 TCATGCCTTAATGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGATTCAT
37022 TTTAGAGAAGTTCATACACAATATTCATTCATAATATCCTTTCCAACATATAATGATAACATATT
261 TTTAGAGAAGTTCATACACAATATTCATTCATAATATCCTTTCCAACATATAATGATAACATATT
37087 AATCACTATAAATCAGACATTAACTAAAAACGTTCAAATTTGAATAATTGAGAATCTTATTCATC
326 AATCACTATAAATCAGACATTAACTAAAAACGTTCAAATTTGAATAATTGAGAATCTTATTCATC
37152 TCAAATAATTACAATAAATGTACTCACCTGATAATCCCCACTAA
391 TCAAATAATTACAATAAATGTACTCACCTGATAATCCCCACTAA
37196 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGC
1 TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGC
37261 CTTAATGCATCTTTTATGTATTTTAGTTATAGCATCCTTTCATGCCTTAATGCACCCCTTCATGC
66 CTTAATGCATCTTTTATGTATTTTAGTTATAGCATCC-TTCATGCCTTAATGCACCCCTTCATGC
37326 ATGTTAGTTATGGCATCA-TTCATGCCTTAATGCATCC-TTCATGCATTTTAGTTATGACATCCT
130 ATGTTAGTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCT
*
37389 TTCATGCCTTAATGCATCCTTTCATGCCTTAATGCATCATTTCATGTATTTTAGTTATGGATTCA
195 TTCATGCCTTAATGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGATTCA
*
37454 TTTTAGAGCAGTTCATACACAAATATTCATTCATAATATCCTTTCCATACATATAATGATAACAT
260 TTTTAGAGAAGTTCATACAC-AATATTCATTCATAATATCCTTTCCA-ACATATAATGATAACAT
37519 ATTAATCACTATAAATCAGACATTAACT-AAAACG-TCAAATTTGAATAATTGAGAATCTTATTC
323 ATTAATCACTATAAATCAGACATTAACTAAAAACGTTCAAATTTGAATAATTGAGAATCTTATTC
*
37582 ATCTCAAATAATTACAATAAATGTGCTCACCTGATAATCCCCACTAA
388 ATCTCAAATAATTACAATAAATGTACTCACCTGATAATCCCCACTAA
37629 T
1 T
37630 AAGGTGTAGA
Statistics
Matches: 426, Mismatches: 5, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
433 185 0.43
434 151 0.35
435 90 0.21
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (434 bp):
TTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGCATCCTTTCATGC
CTTAATGCATCTTTTATGTATTTTAGTTATAGCATCCTTCATGCCTTAATGCACCCCTTCATGCA
TGTTAGTTATGGCATCATTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGACATCCTT
TCATGCCTTAATGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTTAGTTATGGATTCAT
TTTAGAGAAGTTCATACACAATATTCATTCATAATATCCTTTCCAACATATAATGATAACATATT
AATCACTATAAATCAGACATTAACTAAAAACGTTCAAATTTGAATAATTGAGAATCTTATTCATC
TCAAATAATTACAATAAATGTACTCACCTGATAATCCCCACTAA
Found at i:42784 original size:16 final size:16
Alignment explanation
Indices: 42763--42798 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
42753 CTCCCCTAAA
42763 CTCTAGAGCTCCCAAG
1 CTCTAGAGCTCCCAAG
42779 CTCTAGAGCTCCCAAG
1 CTCTAGAGCTCCCAAG
42795 CTCT
1 CTCT
42799 TCAGCTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.39, G:0.17, T:0.22
Consensus pattern (16 bp):
CTCTAGAGCTCCCAAG
Found at i:42804 original size:16 final size:16
Alignment explanation
Indices: 42763--42805 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
42753 CTCCCCTAAA
*
42763 CTCTAGAGCTCCCAAG
1 CTCTACAGCTCCCAAG
*
42779 CTCTAGAGCTCCCAAG
1 CTCTACAGCTCCCAAG
*
42795 CTCTTCAGCTC
1 CTCTACAGCTC
42806 TTTTGGGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.21, C:0.40, G:0.16, T:0.23
Consensus pattern (16 bp):
CTCTACAGCTCCCAAG
Found at i:43850 original size:20 final size:20
Alignment explanation
Indices: 43825--43943 Score: 60
Period size: 20 Copynumber: 5.3 Consensus size: 20
43815 TATGGGATCC
43825 TTTCATGTCTTAATGCATCA
1 TTTCATGTCTTAATGCATCA
*
43845 TTTCATGCATTTTAGTTATGTCATTC-
1 TTTCATG--TCTTA---ATG-CA-TCA
* *
43871 TTTCATGCCTTAATGCATCC
1 TTTCATGTCTTAATGCATCA
* * *
43891 TTTCACGCATTTTAGTTATGGCATCC
1 TTTCATG--TCTTA---AT-GCATCA
43917 TTTCATGTCTTAATGCATCA
1 TTTCATGTCTTAATGCATCA
43937 TTTCATG
1 TTTCATG
43944 CATTTTAGTT
Statistics
Matches: 76, Mismatches: 9, Indels: 28
0.67 0.08 0.25
Matches are distributed among these distances:
19 2 0.03
20 27 0.36
21 5 0.07
22 7 0.09
24 7 0.09
25 5 0.07
26 21 0.28
27 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (20 bp):
TTTCATGTCTTAATGCATCA
Found at i:43874 original size:46 final size:46
Alignment explanation
Indices: 43821--44186 Score: 491
Period size: 46 Copynumber: 8.0 Consensus size: 46
43811 AATTTATGGG
* *
43821 ATCCTTTCATGTCTTAATGCATCATTTCATGCATTTTAGTTATGTC
1 ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGTC
* * *
43867 ATTCTTTCATGCCTTAATGCATCCTTTCACGCATTTTAGTTATGGC
1 ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGTC
* * *
43913 ATCCTTTCATGTCTTAATGCATCATTTCATGCATTTTAGTTATGGC
1 ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGTC
* * * * * *
43959 ATCCTTTCATCCCTTAATTCATCCCTTCATTCATTTCAGTTATGAC
1 ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGTC
*
44005 ATCCTTTCATGCATTAATGCATCCTTTCATGCATTTTAGTTATGGT-
1 ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTAT-GTC
* * * *
44051 ATCCTTTCATGCCTTAATGCATCCTTTTATGAATTTTAGTTCTGAC
1 ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGTC
* * *
44097 ATCATTCCATGCCTTAATGCATCCTTTAATGCATTTTAGTTATGTC
1 ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGTC
* * *
44143 ATCCTTTCACGCCTTAATACATCCTTTCATACATTTTAGTTATG
1 ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATG
44187 GATTTGTTTT
Statistics
Matches: 277, Mismatches: 41, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
45 1 0.00
46 275 0.99
47 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (46 bp):
ATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGTTATGTC
Found at i:43875 original size:26 final size:25
Alignment explanation
Indices: 43837--44151 Score: 168
Period size: 26 Copynumber: 13.5 Consensus size: 25
43827 TCATGTCTTA
*
43837 ATGCATCATTTCATGCATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAGTT
* *
43862 ATGTCATTCTTTCATGC--CTTA---
1 ATG-CATCCTTTCATGCATTTTAGTT
*
43883 ATGCATCCTTTCACGCATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAGTT
*
43908 ATGGCATCCTTTCATG--TCTTA---
1 AT-GCATCCTTTCATGCATTTTAGTT
*
43929 ATGCATCATTTCATGCATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAGTT
**
43954 ATGGCATCCTTTCAT-C-CCTTA---
1 AT-GCATCCTTTCATGCATTTTAGTT
* * * *
43975 ATTCATCCCTTCATTCATTTCAGTT
1 ATGCATCCTTTCATGCATTTTAGTT
44000 ATGACATCCTTTCATGCA--TTA---
1 ATG-CATCCTTTCATGCATTTTAGTT
44021 ATGCATCCTTTCATGCATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAGTT
* *
44046 ATGGTATCCTTTCATGC--CTTA---
1 AT-GCATCCTTTCATGCATTTTAGTT
* *
44067 ATGCATCCTTTTATGAATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAGTT
* * * *
44092 CTGACATCATTCCATGC--CTTA---
1 ATG-CATCCTTTCATGCATTTTAGTT
*
44113 ATGCATCCTTTAATGCATTTTAGTT
1 ATGCATCCTTTCATGCATTTTAGTT
44138 ATGTCATCCTTTCA
1 ATG-CATCCTTTCA
44152 CGCCTTAATA
Statistics
Matches: 213, Mismatches: 40, Indels: 73
0.65 0.12 0.22
Matches are distributed among these distances:
20 68 0.32
21 15 0.07
22 18 0.08
24 18 0.08
25 17 0.08
26 77 0.36
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.45
Consensus pattern (25 bp):
ATGCATCCTTTCATGCATTTTAGTT
Found at i:63817 original size:14 final size:14
Alignment explanation
Indices: 63778--63838 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
63768 ATCAAAGTCA
*
63778 ACGGGTTGACTAAG
1 ACGGGTTGACTCAG
** *
63792 ACGATTTAACTCAG
1 ACGGGTTGACTCAG
63806 ACGGGTTGACTCAG
1 ACGGGTTGACTCAG
* *
63820 ACCGAGTTGAATCAG
1 A-CGGGTTGACTCAG
63835 ACGG
1 ACGG
63839 TACTCAGTGA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
14 24 0.67
15 12 0.33
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.21
Consensus pattern (14 bp):
ACGGGTTGACTCAG
Found at i:63821 original size:28 final size:29
Alignment explanation
Indices: 63778--63838 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
63768 ATCAAAGTCA
*
63778 ACGGGTTGACTAAGA-CGA-TTTAACTCAG
1 ACGGGTTGACTAAGACCGAGTTGAA-TCAG
*
63806 ACGGGTTGACTCAGACCGAGTTGAATCAG
1 ACGGGTTGACTAAGACCGAGTTGAATCAG
63835 ACGG
1 ACGG
63839 TACTCAGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 14 0.48
29 11 0.38
30 4 0.14
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.21
Consensus pattern (29 bp):
ACGGGTTGACTAAGACCGAGTTGAATCAG
Found at i:64726 original size:19 final size:19
Alignment explanation
Indices: 64688--64726 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
64678 ATTTATAACA
* * *
64688 TTTTAGATCGCAATCTACT
1 TTTTAGATAGCAACCAACT
64707 TTTTAGATAGCAACCAACT
1 TTTTAGATAGCAACCAACT
64726 T
1 T
64727 ATTTTGTTGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (19 bp):
TTTTAGATAGCAACCAACT
Found at i:68074 original size:18 final size:18
Alignment explanation
Indices: 68051--68095 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
68041 TTTAGTAATG
68051 TAAGATTACAGGCGGGAA
1 TAAGATTACAGGCGGGAA
*
68069 TAAGATTACCGGCGGGAA
1 TAAGATTACAGGCGGGAA
*
68087 TAAAATTAC
1 TAAGATTAC
68096 TGGGAATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (18 bp):
TAAGATTACAGGCGGGAA
Found at i:70373 original size:2 final size:2
Alignment explanation
Indices: 70366--70390 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
70356 TATCTATCAT
70366 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
70391 TAAGCTACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.