genome.fa.s7695.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007695.1 Hibiscus syriacus cultivar Beakdansim tig00109903_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87041

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553--623	32	2.3	30	79	9	79	28	12	5	53	1.61
5101--5125	2	12.5	2	100	0	50	52	0	0	48	1.00
5286--5392	24	4.5	24	74	0	97	47	16	14	21	1.82
5286--5394	48	2.3	48	77	0	119	47	16	14	21	1.82
6466--6518	26	2.0	26	85	0	70	22	20	20	35	1.96
9620--9716	31	3.1	31	88	2	131	30	24	17	26	1.97
14298--14436	32	4.4	32	83	9	171	35	22	15	26	1.94
14291--14420	63	2.1	63	94	0	224	34	20	16	28	1.94
15479--15515	19	1.9	19	100	0	74	24	37	16	21	1.93
18342--18386	23	1.9	24	81	4	56	48	31	8	11	1.69
20009--20061	21	2.4	23	78	15	58	47	3	5	43	1.45
19966--20126	82	2.0	82	97	0	304	44	4	6	44	1.50
20166--20251	38	2.3	35	86	9	109	41	9	2	46	1.48
22871--23007	67	2.0	67	94	0	238	40	18	7	32	1.79
24961--25032	31	2.4	29	81	9	81	43	5	8	43	1.58
25077--25114	20	1.9	20	94	0	67	44	10	23	21	1.83
25078--25120	20	2.3	19	84	8	52	48	9	20	20	1.77
30857--30889	15	2.3	15	89	5	50	42	3	6	48	1.43
34315--34371	2	29.0	2	96	3	107	50	0	0	49	1.00
34879--34909	12	2.7	11	90	9	53	54	16	9	19	1.68
38709--38774	33	2.0	33	100	0	132	30	18	12	39	1.87
48170--48208	17	2.3	17	100	0	78	58	20	0	20	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54584--54715	68	1.9	69	92	1	221	21	12	15	50	1.78
56987--57420	152	2.8	155	78	8	459	41	8	16	33	1.79
57519--57596	30	2.6	30	89	2	111	53	8	8	28	1.62
57546--57600	16	3.6	16	69	18	53	52	9	7	30	1.60
59841--59898	27	2.1	27	83	0	80	34	36	10	18	1.85
59846--59897	27	1.9	27	92	0	86	36	32	9	21	1.86
63039--63067	4	7.2	4	100	0	58	75	0	0	24	0.80
63114--63260	6	22.7	6	67	18	55	72	4	4	18	1.18
63175--63203	13	2.2	13	100	0	58	86	6	0	6	0.72
63231--63308	16	4.5	17	72	19	54	69	2	3	24	1.18
63920--63952	13	2.5	13	90	9	50	12	3	21	63	1.41
64455--64743	38	7.6	39	82	8	264	46	7	3	42	1.49
64452--64743	75	3.9	74	82	7	306	45	7	3	42	1.50
64624--64648	11	2.3	11	100	0	50	44	8	8	40	1.63
64748--64837	39	2.4	37	83	12	103	43	6	5	44	1.53
64822--64868	2	24.0	2	91	4	78	53	0	0	46	1.00
64651--64858	95	2.1	95	81	10	233	45	5	4	43	1.49
65479--66259	84	9.4	84	75	5	650	26	18	23	30	1.98
65480--66259	165	4.7	168	76	6	622	26	18	23	30	1.98
65479--66259	249	3.1	249	88	1	1105	26	18	23	30	1.98
71407--71439	17	1.9	17	88	11	50	75	3	0	21	0.93
72903--72936	13	2.4	14	85	14	52	47	8	0	44	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72944--72968	11	2.3	11	100	0	50	44	8	8	40	1.63
72768--73136	37	9.9	38	82	11	367	47	6	2	43	1.44
73074--73167	39	2.4	40	79	13	106	46	7	5	40	1.55

Tables:   1

The End!