genome.fa.s7699.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007699.1 Hibiscus syriacus cultivar Beakdansim tig00109909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64151

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507--563	25	2.3	25	93	0	96	14	10	29	45	1.78
4513--4552	18	2.2	18	100	0	80	35	22	0	42	1.54
18612--18692	21	4.0	21	80	12	98	24	29	20	24	1.99
19183--19214	2	16.0	2	100	0	64	50	50	0	0	1.00
19214--19241	2	14.0	2	100	0	56	50	0	0	50	1.00
19584--19622	21	1.9	20	85	15	53	25	30	30	12	1.93
22043--22076	12	2.8	12	90	0	59	0	8	58	32	1.29
22043--22076	6	5.7	6	92	0	50	0	8	58	32	1.29
22121--22186	6	10.7	6	82	6	51	22	0	71	6	1.08
22110--22148	21	1.9	21	84	5	53	17	0	76	5	0.96
26702--26806	28	3.5	30	77	7	97	54	1	12	31	1.49
28322--28372	26	2.0	26	84	0	66	45	9	9	35	1.71
29642--29666	13	1.9	13	100	0	50	68	0	0	32	0.90
30905--30939	14	2.5	14	95	0	61	25	48	5	20	1.71
31819--31870	20	2.6	20	96	0	95	38	26	13	21	1.90
31860--31958	21	4.8	20	72	6	72	36	23	19	21	1.95
31925--32119	20	9.6	20	80	6	205	35	26	18	18	1.95
31925--32119	60	3.2	60	82	1	237	35	26	18	18	1.95
32501--32571	33	2.2	33	92	0	115	11	22	18	47	1.80
32692--32746	14	3.6	14	73	21	56	40	23	27	9	1.85
32692--32762	33	2.2	33	92	0	115	42	25	23	8	1.82
32758--32855	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32780--32869	14	5.7	14	74	23	81	8	25	23	42	1.83
32763--32877	33	3.5	33	95	0	212	9	24	20	45	1.81
34573--35044	184	2.5	186	98	0	921	22	12	19	45	1.83
34573--35044	93	5.1	93	98	1	921	22	12	19	45	1.83
35088--35222	19	7.6	19	74	16	110	45	26	18	9	1.80
35124--35217	33	2.9	32	88	4	152	46	25	19	8	1.77
35088--35222	52	2.6	51	74	15	141	45	26	18	9	1.80
35218--35346	19	7.3	19	75	17	125	10	18	24	46	1.81
35234--35290	14	3.7	14	77	20	60	10	21	22	45	1.82
35218--35309	33	2.8	33	94	0	166	10	20	21	46	1.81
37249--37284	14	2.6	14	95	0	63	33	0	22	44	1.53
37391--37492	19	5.6	19	84	13	151	44	17	23	14	1.86
37499--37826	33	9.5	33	78	15	217	14	20	18	46	1.83
37521--37826	19	17.4	19	79	16	356	14	19	18	47	1.82
37521--37760	71	3.4	71	83	11	355	15	20	17	47	1.83
37521--37798	52	5.2	52	88	7	327	14	20	17	47	1.82
40328--40374	24	2.0	24	87	8	69	38	21	14	25	1.92
41045--41413	20	18.5	20	86	4	458	20	18	26	34	1.96
47199--47235	3	13.0	3	83	11	51	32	0	0	67	0.91
47199--47235	17	2.2	17	95	0	65	32	0	0	67	0.91
47598--47647	25	2.0	25	100	0	100	28	28	12	32	1.92
55123--55206	2	44.0	2	90	9	140	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55379--55432	4	13.5	4	96	0	99	50	25	0	24	1.50
56477--56552	28	2.7	29	87	4	111	31	9	14	44	1.76
56481--56577	29	3.6	25	80	13	79	29	11	14	44	1.80
56586--56686	49	2.0	51	88	9	152	34	12	17	34	1.88
56671--56796	30	4.1	30	72	14	112	34	8	12	44	1.73
56685--56841	65	2.4	64	90	3	235	31	10	12	45	1.76
57072--57186	59	1.9	59	87	3	169	32	13	12	41	1.82
57815--57868	28	1.9	28	85	7	74	22	16	16	44	1.86
58420--58470	26	1.9	28	88	11	81	31	3	3	60	1.33
58825--58873	25	2.0	25	96	4	91	28	26	12	32	1.92
61909--61970	30	2.0	31	87	9	90	40	9	19	30	1.84
62944--62979	18	1.9	19	88	5	56	52	11	11	25	1.69

Tables:   1

The End!