genome.fa.s7700.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007700.1 Hibiscus syriacus cultivar Beakdansim tig00109911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140046

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1622--1657	16	2.2	17	95	5	65	33	0	0	66	0.92
2011--2060	25	2.0	25	100	0	100	28	28	12	32	1.92
8528--8560	14	2.3	15	90	10	52	72	9	15	3	1.21
9536--9619	2	42.0	2	100	0	168	50	0	0	50	1.00
9799--9856	4	14.5	4	96	0	107	50	25	0	24	1.50
10321--10559	105	2.3	102	85	6	304	30	18	12	38	1.88
10505--10589	36	2.4	36	84	4	109	30	21	11	36	1.89
10523--10624	36	2.9	36	78	7	95	34	20	10	34	1.87
10932--11049	29	4.2	29	77	12	111	30	9	13	46	1.75
10967--11049	26	3.1	25	80	11	76	28	9	14	46	1.76
11135--11199	28	2.3	28	91	2	103	36	7	13	41	1.74
11181--11302	37	3.5	36	71	15	121	31	12	11	45	1.77
11148--11362	67	3.3	67	87	4	269	29	11	12	46	1.77
11543--11666	63	2.0	62	88	1	185	30	14	11	43	1.80
12308--12361	28	1.9	28	85	7	74	22	16	16	44	1.86
12401--12619	113	1.9	113	100	0	438	26	29	18	25	1.98
12516--12779	40	6.2	45	73	17	195	24	30	19	25	1.98
12514--12748	129	1.8	129	100	0	470	24	30	19	25	1.98
12934--12982	3	17.0	3	79	8	57	30	2	2	65	1.15
13344--13393	25	2.0	25	100	0	100	28	28	12	32	1.92
16517--16583	34	2.0	34	93	0	116	43	8	17	29	1.80
19858--19886	5	5.8	5	100	0	58	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20140--20186	21	2.2	21	92	0	76	31	25	21	21	1.98
20147--20231	21	4.1	21	77	17	79	31	22	21	24	1.98
20216--20297	21	3.9	21	91	0	137	26	23	21	28	1.99
20194--20304	21	5.3	21	87	0	123	28	23	21	26	1.99
20195--20305	42	2.6	42	84	0	141	28	23	21	26	1.99
21003--21039	19	1.9	19	100	0	74	32	29	16	21	1.95
30925--30968	20	2.1	21	87	4	63	38	0	9	52	1.33
34928--34967	2	20.0	2	100	0	80	50	0	0	50	1.00
36309--36358	15	3.3	15	77	11	57	44	4	0	52	1.20
42911--43027	60	1.9	61	89	1	182	36	11	18	32	1.88
48668--48753	39	2.2	39	81	4	93	26	19	16	37	1.93
48740--48949	105	2.0	105	92	0	348	21	22	24	30	1.99
49143--49209	30	2.2	30	84	5	91	22	38	22	16	1.92
60606--60682	24	3.3	24	66	14	70	31	23	14	31	1.94
60611--60685	22	3.3	22	66	14	62	32	22	14	30	1.94
79005--79097	21	4.6	20	78	4	96	38	18	24	18	1.92
79002--79097	41	2.3	41	98	0	183	39	17	23	18	1.92
79005--79097	20	4.6	20	78	4	96	38	18	24	18	1.92
79086--79179	20	4.7	20	77	2	80	35	24	17	23	1.95
79083--79160	41	1.9	41	83	0	102	41	21	15	21	1.90
79697--79761	19	3.4	19	84	2	76	44	26	18	10	1.82
79757--79960	19	11.1	19	79	13	212	12	22	22	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79757--79960	58	3.7	57	76	15	185	12	22	22	43	1.86
79848--79935	33	2.6	33	92	1	140	11	25	25	38	1.89
79903--79960	20	2.9	20	80	10	64	13	24	18	43	1.87
82302--82374	14	4.5	15	74	22	60	13	20	19	46	1.83
82298--82364	18	3.8	19	83	16	92	13	22	17	46	1.83
82481--82517	14	2.6	14	86	0	56	48	21	0	29	1.50
82936--83008	14	4.5	15	74	22	60	13	20	19	46	1.83
82932--82998	18	3.8	19	83	16	92	13	22	17	46	1.83
83115--83151	14	2.6	14	86	0	56	48	21	0	29	1.50
82060--84030	633	3.1	633	98	0	3838	35	19	12	32	1.89
83569--83641	14	4.5	15	74	22	60	13	20	19	46	1.83
83565--83631	18	3.8	19	83	16	92	13	22	17	46	1.83
83748--83784	14	2.6	14	86	0	56	48	21	0	29	1.50
85702--85759	14	3.9	14	79	16	71	48	25	17	8	1.75
85686--85776	32	2.8	33	94	3	166	47	23	18	10	1.80
85628--85781	19	8.6	19	73	17	114	42	24	20	12	1.87
85793--85882	14	5.9	14	73	19	81	7	18	25	47	1.75
85788--85898	32	3.4	32	94	1	195	9	19	24	46	1.78
85883--85937	20	2.8	19	83	8	65	16	23	23	36	1.94
86410--86454	18	2.5	18	85	0	63	15	15	42	26	1.87
88261--88375	20	5.7	20	76	5	79	23	16	23	36	1.94
88364--88459	41	2.3	41	98	0	147	18	23	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88364--88456	20	4.6	20	78	4	96	18	24	18	38	1.92
90516--90560	20	2.2	20	96	0	81	15	28	17	37	1.91
91149--91187	20	1.9	21	94	5	71	46	25	15	12	1.81
91328--91368	21	1.9	22	85	5	57	51	17	14	17	1.77
91135--91772	181	3.5	181	88	1	893	44	13	15	26	1.84
92160--92204	19	2.4	18	88	3	63	44	0	17	37	1.49
92450--92488	18	2.2	18	86	9	53	46	5	7	41	1.55
93173--93228	24	2.5	22	83	13	69	41	1	5	51	1.35
93888--93926	18	2.2	18	90	0	60	53	0	38	7	1.30
95277--95888	199	3.1	199	92	1	969	42	15	14	27	1.86
98749--98797	20	2.5	20	86	0	71	53	16	16	14	1.74
98043--100863	940	3.0	941	96	0	5128	39	13	16	31	1.87
100598--101043	182	2.4	181	89	1	660	43	12	15	28	1.84
101663--101710	23	2.1	23	92	0	78	37	14	8	39	1.76
102307--102361	29	1.9	29	82	10	69	34	14	3	47	1.62
108607--108693	20	4.3	20	94	0	138	22	31	24	21	1.99
109261--109324	18	3.3	20	77	18	57	62	0	1	35	1.05
109331--109435	12	8.7	12	72	16	83	59	1	0	39	1.09
109318--109408	13	7.1	14	70	20	58	59	1	0	39	1.05
109333--109404	23	3.0	24	84	11	85	54	1	0	44	1.08
115070--115095	13	2.0	13	100	0	52	30	7	23	38	1.83
118195--118264	20	3.5	20	71	24	74	22	22	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118135--118390	41	6.1	41	91	1	377	23	22	25	29	1.99
118297--118366	21	3.4	21	68	18	65	20	24	30	25	1.99
119284--119526	41	5.9	41	92	0	396	30	23	22	23	1.99
121781--121928	43	3.5	42	78	8	122	26	12	5	56	1.57
121859--122195	129	2.6	128	82	6	373	24	20	9	46	1.79
121914--122195	44	6.6	41	72	10	156	24	20	10	45	1.82
121859--122245	171	2.3	171	82	5	444	23	19	9	47	1.79
121894--122234	129	2.7	129	81	8	324	23	20	9	45	1.81
129578--129614	2	18.5	2	94	0	65	48	2	0	48	1.15

Tables:   1

The End!