genome.fa.s7702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007702.1 Hibiscus syriacus cultivar Beakdansim tig00109913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61708

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71--114	22	2.0	22	95	0	79	20	45	15	18	1.85
375--412	20	1.9	20	88	0	58	13	15	21	50	1.78
1720--1764	18	2.5	18	88	0	72	26	44	15	13	1.83
2234--2279	20	2.3	20	92	0	74	39	26	19	15	1.91
2242--2305	20	3.2	20	84	4	85	42	20	21	15	1.89
2273--2353	18	4.6	19	77	17	95	44	20	20	13	1.86
2360--2447	18	4.7	19	88	4	117	13	23	23	38	1.91
2360--2466	39	2.8	37	77	6	117	14	21	24	40	1.90
4299--4333	13	2.6	14	90	4	54	28	0	22	48	1.51
4449--4516	19	3.6	19	95	0	118	48	13	20	17	1.80
4535--4592	20	2.9	20	94	0	98	17	22	22	37	1.93
5652--5705	24	2.2	24	90	0	81	24	16	20	38	1.92
8195--8253	19	3.4	19	73	22	74	49	18	18	13	1.80
8175--8292	33	3.4	37	75	16	126	44	20	18	16	1.87
8196--8295	33	3.0	33	88	2	139	43	19	19	19	1.89
8288--8330	20	2.2	20	87	4	61	16	18	23	41	1.89
8316--8349	14	2.4	14	85	0	50	8	23	20	47	1.78
8474--8508	14	2.5	14	90	0	61	45	22	0	31	1.53
9867--9933	21	3.2	21	68	4	55	19	20	35	23	1.95
9867--9989	42	2.9	41	80	7	113	22	17	36	22	1.95
11993--12031	20	2.0	20	94	0	69	48	15	23	12	1.79
12016--12042	14	1.9	14	100	0	54	40	22	29	7	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11999--12131	33	3.8	33	82	7	122	44	23	21	11	1.84
11991--12136	19	8.1	19	74	17	123	44	21	21	11	1.84
12132--12198	19	3.5	19	81	2	80	10	14	25	49	1.76
12710--12843	20	6.7	20	87	5	162	23	19	25	31	1.98
12710--12864	81	1.9	81	82	2	195	22	20	24	32	1.98
12914--12954	21	2.0	21	85	0	55	34	31	17	17	1.93
16229--16272	22	2.0	23	90	4	72	47	4	2	45	1.35
17271--17308	20	2.0	19	90	10	60	42	10	28	18	1.83
17992--18151	60	2.7	60	80	3	171	31	21	5	41	1.76
18280--18448	60	2.8	58	79	11	164	37	2	25	34	1.71
18664--18699	2	18.5	2	94	5	65	47	0	0	52	1.00
22737--22796	7	8.7	7	73	10	52	45	30	3	21	1.68
22743--22774	13	2.4	14	94	5	57	40	28	6	25	1.79
22706--22800	14	6.8	14	70	9	59	45	28	2	24	1.65
22845--22870	7	3.7	7	100	0	52	57	15	0	26	1.38
22874--22968	49	1.9	49	81	8	113	49	24	1	25	1.57
25593--25648	17	3.3	17	94	0	103	23	16	30	30	1.96
25633--25720	11	7.6	11	72	9	68	27	25	22	25	2.00
25632--25721	23	3.9	23	91	1	126	26	25	22	25	2.00
26252--26326	30	2.5	30	80	2	80	25	0	18	56	1.42
29479--29553	30	2.5	30	81	12	84	60	0	4	36	1.16
38239--38363	30	4.2	30	86	5	173	17	34	28	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42969--43249	42	6.8	42	71	7	171	34	18	20	26	1.96
42972--43249	41	6.7	41	68	11	102	34	18	20	26	1.96
43012--43249	83	2.9	83	82	1	271	34	18	21	25	1.96
51524--51572	21	2.3	22	79	10	57	40	20	36	2	1.64
51557--51582	13	2.0	13	100	0	52	38	23	30	7	1.83
51574--51643	21	3.3	21	87	0	95	40	18	41	0	1.51
51980--52202	43	5.2	43	73	13	149	31	21	18	27	1.97
52268--52339	15	4.9	15	73	20	53	9	18	27	44	1.81
54610--54662	3	17.7	3	96	0	97	64	0	1	33	1.05
54798--55646	116	7.4	116	93	2	1328	29	20	13	35	1.91
56405--56714	83	3.7	83	93	1	525	37	22	13	26	1.91
57759--57804	1	46.0	1	82	0	56	0	8	0	91	0.43
57743--57813	25	3.0	23	86	8	90	0	14	0	85	0.59

Tables:   1

The End!