genome.fa.s7707.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007707.1 Hibiscus syriacus cultivar Beakdansim tig00109922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  300401

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3971--4177	73	2.8	77	85	6	273	24	32	23	19	1.98
9908--9970	21	2.9	21	83	4	63	20	38	23	17	1.93
12550--12760	76	2.8	77	88	2	300	24	32	23	19	1.98
13872--14059	92	2.0	93	83	6	238	30	23	15	30	1.95
22801--22963	85	1.9	85	91	5	267	22	20	5	51	1.68
23963--24004	16	2.6	16	80	0	57	76	0	23	0	0.79
36657--36686	14	2.1	14	100	0	60	36	0	6	56	1.26
44436--44504	23	3.0	23	89	0	102	26	26	27	20	1.99
44714--44781	30	2.3	30	89	2	102	35	20	4	39	1.73
45099--45191	20	4.7	20	95	0	168	29	32	17	21	1.96
45200--45304	56	1.9	54	82	3	129	23	17	21	37	1.94
52765--52810	21	2.2	21	84	0	56	30	30	26	13	1.93
53227--53269	20	2.1	21	87	8	63	48	6	11	32	1.66
53800--53893	31	3.0	31	100	0	188	19	19	23	38	1.93
59912--59941	8	3.6	8	95	4	51	36	0	0	63	0.95
64190--64222	17	1.9	17	88	11	50	45	0	12	42	1.41
69995--70094	40	2.5	40	91	0	164	41	5	13	41	1.65
71375--71447	28	2.7	28	95	4	132	67	9	16	6	1.40
74941--74984	21	2.0	22	91	4	72	38	6	0	54	1.27
77970--78008	12	3.2	12	88	0	60	71	10	2	15	1.23
77976--78010	6	6.0	6	90	3	54	71	11	0	17	1.14
77969--78010	18	2.4	17	84	7	57	69	9	2	19	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81940--81990	26	2.0	26	96	0	93	43	5	21	29	1.76
89936--89994	29	2.0	29	100	0	118	27	28	6	37	1.82
91160--91614	6	76.3	6	97	1	855	33	0	16	49	1.50
91638--91744	3	35.7	3	91	0	169	33	1	0	63	1.11
92216--92268	26	2.0	26	82	7	63	64	15	20	0	1.29
92248--92284	18	2.1	18	100	0	74	78	5	16	0	0.93
93044--93086	22	2.0	21	86	4	59	37	2	2	58	1.24
104382--104433	1	52.0	1	78	0	50	88	0	9	1	0.59
104381--104433	23	2.3	23	87	3	72	86	0	11	1	0.64
104382--104434	17	3.3	16	79	7	63	86	0	11	1	0.64
106392--107140	113	6.6	112	86	7	855	36	13	20	29	1.91
106392--107140	227	3.3	228	85	7	955	36	13	20	29	1.91
107269--107353	3	28.7	3	87	7	120	34	1	1	63	1.10
107269--107353	31	2.7	32	87	5	120	34	1	1	63	1.10
107269--107364	37	2.6	37	87	6	126	36	1	1	61	1.10
107349--107391	12	3.8	11	84	9	52	55	0	0	44	0.99
107852--107890	20	2.0	20	100	0	78	82	2	15	0	0.79
108601--108630	12	2.4	13	94	5	53	36	0	3	60	1.14
108640--108680	20	2.0	21	85	4	57	36	2	2	58	1.24
108861--108910	15	3.1	16	70	18	50	54	0	8	38	1.30
120299--120366	33	2.0	35	81	16	81	50	1	7	41	1.39
120529--120566	18	2.2	18	90	4	60	26	0	10	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136530--136575	21	2.3	19	85	14	58	78	0	6	15	0.95
136664--136720	17	3.3	17	74	11	53	63	3	7	26	1.36
137958--138003	2	23.5	2	95	4	85	52	0	0	47	1.00
138804--139244	36	13.0	36	64	21	166	40	11	19	29	1.86
138806--139058	102	2.5	102	96	0	463	38	11	19	30	1.87
138944--139112	66	2.6	66	82	4	180	39	11	18	30	1.86
138840--139226	166	2.3	165	80	5	447	40	11	18	29	1.86
139079--139146	34	2.0	33	85	2	91	41	14	20	23	1.89
139928--139969	2	21.5	2	95	4	77	50	0	0	50	1.00
139920--140009	8	13.0	7	78	16	57	53	0	0	46	1.00
139953--140028	40	1.9	40	88	0	116	51	0	0	48	1.00
141114--141289	95	1.9	95	87	4	266	30	19	18	31	1.96
142952--143008	21	2.7	21	74	15	55	10	31	8	49	1.68
145448--145504	17	3.3	17	74	11	53	63	3	7	26	1.36
145667--145706	2	20.0	2	89	0	62	45	0	5	50	1.23
146760--146794	2	18.5	2	88	11	56	54	0	0	45	0.99
155796--155868	36	2.0	36	100	0	146	42	10	16	30	1.82
161790--161864	38	2.0	38	97	0	141	37	0	4	58	1.17
164495--164531	20	1.9	19	89	10	58	45	10	24	18	1.81
165340--165401	33	1.9	33	86	3	90	37	11	4	46	1.61
166014--166075	29	2.1	28	82	8	79	48	3	0	48	1.17
170049--170091	2	21.5	2	90	0	59	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179609--179652	2	22.0	2	95	0	79	50	2	0	47	1.13
179877--180192	4	79.5	4	97	1	564	49	26	0	23	1.53
184041--184112	29	2.5	29	85	14	89	31	5	1	61	1.28
184441--184537	32	3.0	32	93	0	167	34	17	26	21	1.96
190576--190629	24	2.4	21	80	19	72	29	9	16	44	1.79
190583--190631	24	2.0	25	96	4	91	32	8	12	46	1.71
192143--192198	14	3.5	17	74	18	57	46	3	3	46	1.37
192186--192217	14	2.1	16	88	11	50	56	0	0	43	0.99
192592--192624	17	1.9	17	93	0	57	66	0	0	33	0.92
193879--193914	14	2.6	13	87	12	54	63	0	0	36	0.94
194663--194702	21	2.0	20	85	9	55	47	2	5	45	1.38
194996--195037	15	2.8	15	82	10	50	52	0	4	42	1.22
195130--195168	21	1.9	20	84	5	51	66	0	7	25	1.18
197300--197367	5	14.4	5	73	14	56	73	2	2	20	1.09
197300--197367	14	4.9	13	76	16	66	73	2	2	20	1.09
208363--208396	2	17.0	2	100	0	68	50	0	0	50	1.00
209245--209287	22	2.0	21	86	8	61	23	18	41	16	1.89
209391--209428	20	2.0	20	84	5	51	44	13	15	26	1.83
209435--209483	20	2.5	20	89	0	80	20	10	24	44	1.82
209474--209523	20	2.5	20	90	0	82	24	18	24	34	1.96
209647--209699	2	26.5	2	100	0	106	50	0	0	49	1.00
212272--212312	2	20.0	2	87	5	55	43	2	2	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220613--220658	24	1.9	24	86	0	65	45	8	8	36	1.66
229267--229311	21	2.1	21	100	0	90	44	0	24	31	1.54
232064--232138	29	2.6	28	81	8	80	38	2	2	56	1.28
235184--235295	24	4.7	24	86	4	145	41	19	16	22	1.89
239772--239838	35	1.9	35	93	0	116	34	28	26	10	1.90
239926--240037	24	4.7	24	86	4	154	40	19	16	24	1.91
244793--244865	34	2.1	34	92	0	119	31	5	27	35	1.80
271765--272107	183	1.9	185	90	3	557	44	2	7	45	1.44
271766--272150	183	2.1	184	83	7	492	44	2	7	45	1.45
284868--284923	28	2.0	28	82	6	69	32	1	23	42	1.64
286228--286277	2	26.5	2	80	11	61	48	2	0	50	1.12
286224--286284	18	3.2	19	79	11	72	45	4	0	49	1.23
287225--287344	63	1.9	63	92	0	204	25	22	15	35	1.94
287845--287879	12	2.9	12	91	0	52	42	2	5	48	1.41
287850--287917	12	6.1	12	74	19	58	33	4	7	54	1.48
299255--300102	103	8.2	105	91	4	1329	33	26	18	22	1.96
299255--300048	207	3.8	209	94	3	1344	33	26	18	21	1.97

Tables:   1

The End!