Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007708.1 Hibiscus syriacus cultivar Beakdansim tig00109923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 882274
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 3
Found at i:4076 original size:180 final size:180
Alignment explanation
Indices: 3756--4093 Score: 495
Period size: 180 Copynumber: 1.9 Consensus size: 180
3746 TTTTCTAATT
*
3756 TATATAAAAATTAAATATTTTTAATTCAAAAAAAAAAGTTTATAATTAATTTAAATAATATATAA
1 TATATAAAAATTAAATATTTTTAATT-AAAAAAAAAAGTTTACAATTAATTTAAATAATATATAA
* *
3821 TTATAAAATAAAATTTCAGATAAATTTTTGAATTAATTAATATTGATTTAGGTTTAAAAGTTATT
65 TTATAAAATAAAATTT---ATAAATTGTTGAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
3886 AGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGTTTATACCATATGTTA
127 AGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGTTTATACCATATGTTA
* * *
3940 TATATAATATATTTAATATTTTTAATT-AAAAAAACAGTTTACAATTAATTTAAAATAATATATA
1 TATATAA-AAATTAAATATTTTTAATTAAAAAAAAAAGTTTACAATTAATTT-AAATAATATATA
* *
4004 ATTATAAAATAAAAATTT-TATATTGTT-AATTAATT-ATATTTGATTTAATTTTAAAAGTTATT
64 ATTATAAAAT-AAAATTTATAAATTGTTGAATTAATTAATA-TTGATTTAAGTTTAAAAGTTATT
*
4066 TGATCTTAAATTATTAATTGGGTTTTAA
127 AGATCTTAAATTATTAATTGGGTTTTAA
4094 GCCCATATGT
Statistics
Matches: 141, Mismatches: 9, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
179 3 0.02
180 56 0.40
181 7 0.05
183 22 0.16
184 29 0.21
185 24 0.17
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (180 bp):
TATATAAAAATTAAATATTTTTAATTAAAAAAAAAAGTTTACAATTAATTTAAATAATATATAAT
TATAAAATAAAATTTATAAATTGTTGAATTAATTAATATTGATTTAAGTTTAAAAGTTATTAGAT
CTTAAATTATTAATTGGGTTTTAAATGGTTTGGGTTTATACCATATGTTA
Found at i:9768 original size:17 final size:16
Alignment explanation
Indices: 9739--9781 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
9729 TTTTTTTCTT
9739 TTATTAATCATTTTAA
1 TTATTAATCATTTTAA
*
9755 TTATTGAATGATTTTAA
1 TTATT-AATCATTTTAA
*
9772 GTA-TAATCAT
1 TTATTAATCAT
9782 AACTAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 5 0.22
16 6 0.26
17 12 0.52
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (16 bp):
TTATTAATCATTTTAA
Found at i:17979 original size:2 final size:2
Alignment explanation
Indices: 17968--18019 Score: 65
Period size: 2 Copynumber: 27.5 Consensus size: 2
17958 CCTTTAACAT
* *
17968 TA TA TA -A TA TA TT TA CA T- TA TA -A TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18007 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
18020 TTTACATATG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
1 3 0.07
2 40 0.93
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:17987 original size:18 final size:19
Alignment explanation
Indices: 17964--18026 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 19
17954 TTATCCTTTA
17964 ACATTATATA-ATATATTT
1 ACATTATATATATATATTT
*
17982 ACATTATAATATATATATAT
1 ACATTAT-ATATATATATTT
*
18002 ATATATATATATATATATTTT
1 ACAT-TATATATATATA-TTT
18023 ACAT
1 ACAT
18027 ATGGTGCATA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 7 0.19
19 3 0.08
20 19 0.51
21 8 0.22
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
ACATTATATATATATATTT
Found at i:19061 original size:62 final size:63
Alignment explanation
Indices: 18964--19082 Score: 195
Period size: 62 Copynumber: 1.9 Consensus size: 63
18954 TTTGTTAAAA
18964 GGGTAAACTTCATTTTGGCTCCCTCTATTTG-AAAAACATTCAATTTGGTCCCCAAACCGGTT
1 GGGTAAACTTCATTTTGGCTCCCTCTATTTGAAAAAACATTCAATTTGGTCCCCAAACCGGTT
* * * *
19026 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACGTTTAATTTGGTCCCCAAA
1 GGGTAAACTTCATTTTGGCTCCCTCTATTTGAAAAAACATTCAATTTGGTCCCCAAA
19083 TTGGTTTAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
62 29 0.56
63 23 0.44
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (63 bp):
GGGTAAACTTCATTTTGGCTCCCTCTATTTGAAAAAACATTCAATTTGGTCCCCAAACCGGTT
Found at i:19593 original size:12 final size:12
Alignment explanation
Indices: 19578--19612 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
19568 TTATATTTTA
*
19578 ATATATATATAT
1 ATATGTATATAT
19590 ATATGTATATAT
1 ATATGTATATAT
*
19602 CTATGTATATA
1 ATATGTATATA
19613 CTTGTAATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (12 bp):
ATATGTATATAT
Found at i:19618 original size:10 final size:12
Alignment explanation
Indices: 19583--19650 Score: 58
Period size: 12 Copynumber: 6.1 Consensus size: 12
19573 TTTTAATATA
*
19583 TATATATATATG
1 TATATATCTATG
19595 TATATATCTATG
1 TATATATCTATG
19607 TATATA-CT-TG
1 TATATATCTATG
* *
19617 TA-ATAGTTTATT
1 TATATA-TCTATG
19629 TATATATCTAT-
1 TATATATCTATG
19640 TAT-TAT-TATG
1 TATATATCTATG
19650 T
1 T
19651 GTTTTCAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
9 6 0.13
10 8 0.17
11 6 0.13
12 24 0.51
13 3 0.06
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.54
Consensus pattern (12 bp):
TATATATCTATG
Found at i:31185 original size:105 final size:105
Alignment explanation
Indices: 31003--31866 Score: 1414
Period size: 105 Copynumber: 8.2 Consensus size: 105
30993 AGGTTTTACC
31003 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
31068 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
31108 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
31173 ACGAAGGAACCGCTGGTTGTCACCAAACATTTCTCCAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
31213 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
31278 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
31318 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
31383 ACGAAGGGACCGCTGGTTGTCACCAAACATTTCTCCAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
31423 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
31488 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
* *
31528 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCCGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* ** *
31593 ACGAAGGGACCGCTGGTTGTCAATAAACACCTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
**
31633 CAGAGCCAATTTCAACTTTGCAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
31698 ACGAAGGGACCGCTGGTTGTCAACAAACATCTCTC-AATGT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAAT-T
* * * * * * * *
31738 CAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGACTCAAGACAGCACAAGCTCGACTTCACA
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
**
31803 ACGAAGGGA-CGACTGACTGTCAACGAATA-ATTTCTC-AATT
66 ACGAAGGGACCG-CTGGTTGTCAAC-AA-ACATTTCTCAAATT
*
31843 CCATAGCC-ATTTCCAACTTCACAA
1 -CAGAGCCAATTT-CAACTTCACAA
31867 ACAGGTTGAC
Statistics
Matches: 715, Mismatches: 38, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
104 4 0.01
105 683 0.96
106 27 0.04
107 1 0.00
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.22
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
Found at i:32221 original size:2 final size:2
Alignment explanation
Indices: 32210--32291 Score: 116
Period size: 2 Copynumber: 42.5 Consensus size: 2
32200 CCTTTAACAT
* * *
32210 TA TA TA -A TA TA TT TA CA T- TA TA -A TT TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32249 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32291 T
1 T
32292 TTTACATATG
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
1 3 0.04
2 68 0.96
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:33333 original size:59 final size:61
Alignment explanation
Indices: 33238--33354 Score: 184
Period size: 60 Copynumber: 2.0 Consensus size: 61
33228 TTTGTTAAAA
*
33238 GGGGTAAACTTCATTTTGGCTCCCTCTGTTTG-AAAAACATTCAATTTGGTCCCCAAACCG
1 GGGGTAAACTTCATTTTGGCTCCCTCTATTTGAAAAAACATTCAATTTGGTCCCCAAACCG
* * *
33298 GGGGTAAACTTCA-TTTGGCTCCCTCTATTTTAAAAAACGTTTAATTTGGTCCCCAAA
1 GGGGTAAACTTCATTTTGGCTCCCTCTATTTGAAAAAACATTCAATTTGGTCCCCAAA
33355 TCTAACTTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
59 16 0.31
60 36 0.69
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (61 bp):
GGGGTAAACTTCATTTTGGCTCCCTCTATTTGAAAAAACATTCAATTTGGTCCCCAAACCG
Found at i:33814 original size:10 final size:10
Alignment explanation
Indices: 33801--33835 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
33791 TTATATTTTA
33801 ATATATATGT
1 ATATATATGT
33811 ATATATATGT
1 ATATATATGT
*
33821 ATATCTATGT
1 ATATATATGT
33831 ATATA
1 ATATA
33836 CTTGTAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.49
Consensus pattern (10 bp):
ATATATATGT
Found at i:33841 original size:10 final size:11
Alignment explanation
Indices: 33801--33841 Score: 54
Period size: 10 Copynumber: 4.1 Consensus size: 11
33791 TTATATTTTA
33801 ATATA-TATGT
1 ATATACTATGT
33811 ATATA-TATGT
1 ATATACTATGT
33821 ATAT-CTATGT
1 ATATACTATGT
33831 ATATACT-TGT
1 ATATACTATGT
33841 A
1 A
33842 ATAGTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 27 0.93
11 2 0.07
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.49
Consensus pattern (11 bp):
ATATACTATGT
Found at i:36093 original size:20 final size:20
Alignment explanation
Indices: 36052--36099 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
36042 ATAAAAAATC
*
36052 ATTTTTTATATTTCTATAAT
1 ATTTTTTATATATCTATAAT
*
36072 ATTTTTTATAATAT-TATCAT
1 ATTTTTTAT-ATATCTATAAT
*
36092 ATTATTTA
1 ATTTTTTA
36100 AAAACTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTTTATATATCTATAAT
Found at i:39437 original size:21 final size:19
Alignment explanation
Indices: 39391--39436 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
39381 CCCACTGTTT
*
39391 GATATATACCAGTTAAGAA
1 GATATATACCAGCTAAGAA
*
39410 GATATATACCAGCTACGAA
1 GATATATACCAGCTAAGAA
*
39429 GAGATATA
1 GATATATA
39437 TGGGGTGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (19 bp):
GATATATACCAGCTAAGAA
Found at i:40266 original size:23 final size:24
Alignment explanation
Indices: 40204--40267 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 24
40194 AATTCAAAGT
*
40204 AATTAAA-TAAATCTTTAATGTTG
1 AATTAAATTAAATTTTTAATGTTG
** *
40227 AATTTTGATTATA-TTTTAA-GTTG
1 AA-TTAAATTAAATTTTTAATGTTG
40250 AATTAAATTAAATTTTTA
1 AATTAAATTAAATTTTTA
40268 GATATTGAGA
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
22 7 0.23
23 13 0.42
24 8 0.26
25 3 0.10
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.50
Consensus pattern (24 bp):
AATTAAATTAAATTTTTAATGTTG
Found at i:42174 original size:51 final size:52
Alignment explanation
Indices: 42028--42180 Score: 154
Period size: 51 Copynumber: 3.0 Consensus size: 52
42018 TACTTAGATT
* * * * *
42028 ACTTATTTTTCCCAGGTTTGGACCTTTTTGCACTT--GCGGATTCTTTCTCGG
1 ACTTCTTTTTCCCGGGTTTGGACTTTTTTG-TCTTCATCGGATTCTTTCTCGG
* * * **
42079 ACCTCTTTTTCCTGGGTTTGTACTTTTCCGTAC-TCAT-GGATTCTTTCTCGG
1 ACTTCTTTTTCCCGGGTTTGGACTTTTTTGT-CTTCATCGGATTCTTTCTCGG
*
42130 ACTTCTTTTTCCCGGGTTTGGACTTTTTTGTCTTCATCGG-TTCTTCCTCGG
1 ACTTCTTTTTCCCGGGTTTGGACTTTTTTGTCTTCATCGGATTCTTTCTCGG
42181 TGAGACTGTC
Statistics
Matches: 81, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
50 2 0.02
51 77 0.95
52 2 0.02
ACGTcount: A:0.09, C:0.25, G:0.19, T:0.47
Consensus pattern (52 bp):
ACTTCTTTTTCCCGGGTTTGGACTTTTTTGTCTTCATCGGATTCTTTCTCGG
Found at i:74329 original size:77 final size:77
Alignment explanation
Indices: 74227--74382 Score: 233
Period size: 77 Copynumber: 2.0 Consensus size: 77
74217 TACCAACGTT
* * * *
74227 TTGGACTAAAAT-GCCTTTATTTTTTTTTTCTAAAAATATCCTTATTTTATCATTGAATAATAAA
1 TTGGACTAAAATACCCTTAAATTTTTTTTTC-AAAAATATACTTATTTTATCATTGAATAATAAA
* *
74291 AATTTTATGAATG
65 AATTATATAAATG
*
74304 TTGGACTAAAATACCCTTAAATTTTTTTTTCAAAAATATACTTATTTTGTCATTGAATAATAAAA
1 TTGGACTAAAATACCCTTAAATTTTTTTTTCAAAAATATACTTATTTTATCATTGAATAATAAAA
74369 ATTATATAAATG
66 ATTATATAAATG
74381 TT
1 TT
74383 AAATTATAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
77 56 0.79
78 15 0.21
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (77 bp):
TTGGACTAAAATACCCTTAAATTTTTTTTTCAAAAATATACTTATTTTATCATTGAATAATAAAA
ATTATATAAATG
Found at i:78547 original size:20 final size:20
Alignment explanation
Indices: 78518--78555 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
78508 AACACGTTGG
*
78518 GCATCTGAGGCCATCCGAGA
1 GCATCCGAGGCCATCCGAGA
78538 GCATCCGAGGCCATCCGA
1 GCATCCGAGGCCATCCGA
78556 ACGAGCTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.34, G:0.29, T:0.13
Consensus pattern (20 bp):
GCATCCGAGGCCATCCGAGA
Found at i:78578 original size:23 final size:23
Alignment explanation
Indices: 78543--78594 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
78533 CGAGAGCATC
* *
78543 CGAGGCCATCCGAACGAGCTATG
1 CGAGGGCAACCGAACGAGCTATG
*
78566 CGAGGGCAACCGAGCGAGCTATG
1 CGAGGGCAACCGAACGAGCTATG
78589 CGAGGG
1 CGAGGG
78595 AATCTGAGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.25, C:0.27, G:0.38, T:0.10
Consensus pattern (23 bp):
CGAGGGCAACCGAACGAGCTATG
Found at i:78747 original size:29 final size:29
Alignment explanation
Indices: 78705--78790 Score: 154
Period size: 29 Copynumber: 3.0 Consensus size: 29
78695 GAGCAAGGGT
*
78705 AGGTCGCCCGGAGTGCATGGCGACTTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
78734 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
*
78763 AGGTCGTCCGGAGTGCATGGCGACCTAC
1 AGGTCGCCCGGAGTGCATGGCGACCTAC
78791 GGCTAACACT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.20, C:0.29, G:0.35, T:0.16
Consensus pattern (29 bp):
AGGTCGCCCGGAGTGCATGGCGACCTACA
Found at i:89010 original size:58 final size:58
Alignment explanation
Indices: 88912--89026 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
88902 ACATCCGTTG
* * *
88912 TCACGTTGGACGCAGTAGCATACATATTTCTCTGTGTTAGATCGATCAACTCGGGACT
1 TCACGTTAGACGCAGTAGCAGACATATTTCTCCGTGTTAGATCGATCAACTCGGGACT
*
88970 TCACGTTAGACGCAGTAGCAGACATATTTCTCCGTTTTAGATCGATCAACTCGGGAC
1 TCACGTTAGACGCAGTAGCAGACATATTTCTCCGTGTTAGATCGATCAACTCGGGAC
89027 ATAACTGAGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (58 bp):
TCACGTTAGACGCAGTAGCAGACATATTTCTCCGTGTTAGATCGATCAACTCGGGACT
Found at i:90430 original size:128 final size:128
Alignment explanation
Indices: 90187--90478 Score: 489
Period size: 128 Copynumber: 2.3 Consensus size: 128
90177 ACTATTCACA
* * *
90187 TGAAGGCGCGTT-CCTGGGGCGCGTCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTATCAGAGAATATGTTATCATTGCCCTA
* * *
90251 TTATGTCATTCATGTCCCTCGGGGACACTATTCATATCAGTACCTATTATTTCT-ATGGGGACT
66 TTATGTCACTCATGTCCCTCAGAGACACTATTCATATCAGTACCTATTATTTCTCA-GGGGACT
*
90314 TGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTATCAGAGAATATGTTATCATTGCCCTA
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTATCAGAGAATATGTTATCATTGCCCTA
*
90379 TTATGTCACTCATGTCCCTCATAGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
66 TTATGTCACTCATGTCCCTCAGAGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
90442 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTT
1 TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTT
90479 CATCGTCCGA
Statistics
Matches: 154, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
127 12 0.08
128 141 0.92
129 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (128 bp):
TGAAGGCGCGTTCCCGGGGGCGCGCCTTCCATTATTTTATCAGAGAATATGTTATCATTGCCCTA
TTATGTCACTCATGTCCCTCAGAGACACTATTCATATCAGTACCTATTATTTCTCAGGGGACT
Found at i:91352 original size:31 final size:33
Alignment explanation
Indices: 91287--91366 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 33
91277 TTAATAATTC
* *
91287 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAAATAATAATTACATAAATATTA-TTTAA
*
91321 TAAAAAAATAATATTTACATAAATA-TA-TTAA
1 TAAAAAAATAATAATTACATAAATATTATTTAA
*
91352 TATAAAATATAATAA
1 TA-AAAAAATAATAA
91367 CTCTTTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 6 0.15
32 10 0.25
33 2 0.05
34 22 0.55
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (33 bp):
TAAAAAAATAATAATTACATAAATATTATTTAA
Found at i:105745 original size:21 final size:20
Alignment explanation
Indices: 105719--105978 Score: 215
Period size: 21 Copynumber: 12.6 Consensus size: 20
105709 GTTTCCAGAT
105719 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAA-TTGGACTA
105740 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAA-TTGGACTA
* * *
105761 TCACAATGCGAATATGTA-AA
1 TCGCAATGCGAAT-TGGACTA
*
105781 TCGCAATGCGATAGTCGG-CTA
1 TCGCAATGCGA-A-TTGGACTA
* *
105802 TCGCAATGCGAATATGTA-AA
1 TCGCAATGCGAAT-TGGACTA
* *
105822 TCGCAATGCGATAGTCGACTA
1 TCGCAATGCGA-ATTGGACTA
*
105843 TCGCAATGTGAACTTGGACTA
1 TCGCAATGCGAA-TTGGACTA
105864 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAA-TTGGACTA
*
105885 TCGCAATGCGATAGTCGG-CTA
1 TCGCAATGCGA-A-TTGGACTA
* * *
105906 TCGCAATACGAATGTGTA-AA
1 TCGCAATGCGAAT-TGGACTA
* *
105926 TCGCAATGCGATAGTCGACTA
1 TCGCAATGCGA-ATTGGACTA
105947 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAA-TTGGACTA
*
105968 TCGCATTGCGA
1 TCGCAATGCGA
105979 TTTACATATT
Statistics
Matches: 192, Mismatches: 32, Indels: 30
0.76 0.13 0.12
Matches are distributed among these distances:
19 2 0.01
20 45 0.23
21 140 0.73
22 5 0.03
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (20 bp):
TCGCAATGCGAATTGGACTA
Found at i:105784 original size:41 final size:42
Alignment explanation
Indices: 105739--105895 Score: 189
Period size: 41 Copynumber: 3.8 Consensus size: 42
105729 AACTTGGACT
*
105739 ATCGCAATGCGA-ACTTGGACTATCACAATGCGAATATGTAA
1 ATCGCAATGCGATACTTGGACTATCGCAATGCGAATATGTAA
* *
105780 ATCGCAATGCGATAGTCGG-CTATCGCAATGCGAATATGTAA
1 ATCGCAATGCGATACTTGGACTATCGCAATGCGAATATGTAA
* * * * *
105821 ATCGCAATGCGATA-GTCGACTATCGCAATGTGAACT-TGGACT
1 ATCGCAATGCGATACTTGGACTATCGCAATGCGAA-TATGTA-A
105863 ATCGCAATGCGA-ACTTGGACTATCGCAATGCGA
1 ATCGCAATGCGATACTTGGACTATCGCAATGCGA
105896 TAGTCGGCTA
Statistics
Matches: 99, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
40 1 0.01
41 65 0.66
42 33 0.33
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (42 bp):
ATCGCAATGCGATACTTGGACTATCGCAATGCGAATATGTAA
Found at i:105789 original size:20 final size:20
Alignment explanation
Indices: 105764--105832 Score: 86
Period size: 20 Copynumber: 3.4 Consensus size: 20
105754 TGGACTATCA
105764 CAATGCGAATATGTAAATCG
1 CAATGCGAATATGTAAATCG
***
105784 CAATGCG-ATAGTCGGCTATCG
1 CAATGCGAATA-T-GTAAATCG
105805 CAATGCGAATATGTAAATCG
1 CAATGCGAATATGTAAATCG
105825 CAATGCGA
1 CAATGCGA
105833 TAGTCGACTA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
19 3 0.08
20 21 0.52
21 13 0.32
22 3 0.08
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (20 bp):
CAATGCGAATATGTAAATCG
Found at i:105969 original size:62 final size:61
Alignment explanation
Indices: 105821--106021 Score: 169
Period size: 62 Copynumber: 3.2 Consensus size: 61
105811 GAATATGTAA
* * ** * * *
105821 ATCGCAATGCGATAGTCGACTATCGCAATGTGAACTTGGAC-TATCGCAATGCGA-ACTTGGACT
1 ATCGCAATGCGATACTCGGCTATCGCAATACG-A-TT-TACATATCGCAATGCGATA-GTCGACT
*
105884 ATCGCAATGCGATAGTCGGCTATCGCAATACGAATGTGTA-A-ATCGCAATGCGATAGTCGACT
1 ATCGCAATGCGATACTCGGCTATCGCAATACG-AT-T-TACATATCGCAATGCGATAGTCGACT
* * * *
105946 ATCGCAATGCGA-ACTTGGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCGACT
1 ATCGCAATGCGATACTCGG-CTATCGCAATACGATTTACATA-TCGCAATGCGATAGTCGACT
*
106008 ATCGCATTGCGATA
1 ATCGCAATGCGATA
106022 GTCCAAAATC
Statistics
Matches: 118, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
59 2 0.02
60 2 0.02
61 7 0.06
62 71 0.60
63 36 0.31
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (61 bp):
ATCGCAATGCGATACTCGGCTATCGCAATACGATTTACATATCGCAATGCGATAGTCGACT
Found at i:106012 original size:83 final size:83
Alignment explanation
Indices: 105780--106024 Score: 229
Period size: 83 Copynumber: 3.0 Consensus size: 83
105770 GAATATGTAA
* * *
105780 ATCGCAATGCGATAGTCGG-CTATCGCAATGCGAATA-T-GTAAATCGCAATGCGATAGTCGACT
1 ATCGCAATGCGA-ACTTGGACTATCGCAATGCG-ATAGTCG-ATATCGCAATGCGATAGTCGACT
* * *
105842 ATCGCAATGTGA-ACTTGGACT
63 ATCGCAATGCGATA-GTCGACT
* * *
105863 ATCGCAATGCGAACTTGGACTATCGCAATGCGATAGTCGGCTATCGCAATACGA-ATGT-GTA-A
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGATAGTC-GATATCGCAATGCGATA-GTCG-ACT
105925 ATCGCAATGCGATAGTCGACT
63 ATCGCAATGCGATAGTCGACT
* * *
105946 ATCGCAATGCGAACTTGGACTATCGCATTGCGAT-TTAC-ATATTCGCATTGCGATAGTCGACTA
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGATAGT-CGATA-TCGCAATGCGATAGTCGACTA
*
106009 TCGCATTGCGATAGTC
64 TCGCAATGCGATAGTC
106025 CAAAATCGCA
Statistics
Matches: 134, Mismatches: 16, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
81 2 0.01
82 20 0.15
83 96 0.72
84 15 0.11
85 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (83 bp):
ATCGCAATGCGAACTTGGACTATCGCAATGCGATAGTCGATATCGCAATGCGATAGTCGACTATC
GCAATGCGATAGTCGACT
Found at i:106014 original size:21 final size:21
Alignment explanation
Indices: 105780--106024 Score: 181
Period size: 21 Copynumber: 11.8 Consensus size: 21
105770 GAATATGTAA
*
105780 ATCGCAATGCGATAGTCGGCT
1 ATCGCAATGCGATAGTCGACT
*
105801 ATCGCAATGCGAATA-T-GTA-A
1 ATCGCAATGCG-ATAGTCG-ACT
105821 ATCGCAATGCGATAGTCGACT
1 ATCGCAATGCGATAGTCGACT
* * *
105842 ATCGCAATGTGA-ACTTGGACT
1 ATCGCAATGCGATA-GTCGACT
* *
105863 ATCGCAATGCGA-ACTTGGACT
1 ATCGCAATGCGATA-GTCGACT
*
105884 ATCGCAATGCGATAGTCGGCT
1 ATCGCAATGCGATAGTCGACT
* *
105905 ATCGCAATACGA-ATGT-GTA-A
1 ATCGCAATGCGATA-GTCG-ACT
105925 ATCGCAATGCGATAGTCGACT
1 ATCGCAATGCGATAGTCGACT
* *
105946 ATCGCAATGCGA-ACTTGGACT
1 ATCGCAATGCGATA-GTCGACT
* *
105967 ATCGCATTGCGAT--T-TACAT
1 ATCGCAATGCGATAGTCGAC-T
*
105986 ATTCGCATTGCGATAGTCGACT
1 A-TCGCAATGCGATAGTCGACT
*
106008 ATCGCATTGCGATAGTC
1 ATCGCAATGCGATAGTC
106025 CAAAATCGCA
Statistics
Matches: 185, Mismatches: 20, Indels: 38
0.76 0.08 0.16
Matches are distributed among these distances:
18 2 0.01
19 6 0.03
20 44 0.24
21 124 0.67
22 7 0.04
23 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (21 bp):
ATCGCAATGCGATAGTCGACT
Found at i:106032 original size:21 final size:21
Alignment explanation
Indices: 105988--106034 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
105978 ATTTACATAT
* **
105988 TCGCATTGCGATAGTCGACTA
1 TCGCATTGCGATAGTCCAAAA
106009 TCGCATTGCGATAGTCCAAAA
1 TCGCATTGCGATAGTCCAAAA
106030 TCGCA
1 TCGCA
106035 ACGACTGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAAA
Found at i:106669 original size:42 final size:42
Alignment explanation
Indices: 106607--106743 Score: 256
Period size: 42 Copynumber: 3.3 Consensus size: 42
106597 TGCGATTTTG
106607 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
106649 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
*
106691 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
106733 GACTATCGCAA
1 GACTATCGCAA
106744 TGCGAATATG
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 92 1.00
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (42 bp):
GACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTC
Found at i:106740 original size:21 final size:20
Alignment explanation
Indices: 106604--106749 Score: 127
Period size: 21 Copynumber: 7.0 Consensus size: 20
106594 CGTTGCGATT
106604 TTGGACTATCGCAA-CGAAC
1 TTGGACTATCGCAAGCGAAC
*
106623 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAA-GCGAAC
* *
106646 TTCGACTATCGCAA-CGAAT
1 TTGGACTATCGCAAGCGAAC
*
106665 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAA-GCGAAC
*
106688 TTCGACTATCGCAA-CGAAC
1 TTGGACTATCGCAAGCGAAC
*
106707 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAA-GCGAAC
106730 TTGGACTATCGCAATGCGAA
1 TTGGACTATCGCAA-GCGAA
106750 TATGTAAATC
Statistics
Matches: 102, Mismatches: 13, Indels: 22
0.74 0.09 0.16
Matches are distributed among these distances:
19 25 0.25
21 47 0.46
23 30 0.29
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.21
Consensus pattern (20 bp):
TTGGACTATCGCAAGCGAAC
Found at i:108649 original size:27 final size:27
Alignment explanation
Indices: 108618--108689 Score: 110
Period size: 26 Copynumber: 2.7 Consensus size: 27
108608 GGTTTTTTGA
108618 CCGGATTAAAAACTGGTTTGAAAAAAG
1 CCGGATTAAAAACTGGTTTGAAAAAAG
*
108645 CCGGA-TAAAAACTGGTTTGAAAAAAT
1 CCGGATTAAAAACTGGTTTGAAAAAAG
* *
108671 CCGGATAAAAAACCGGTTT
1 CCGGATTAAAAACTGGTTT
108690 TTTATTGGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 25 0.61
27 16 0.39
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (27 bp):
CCGGATTAAAAACTGGTTTGAAAAAAG
Found at i:110776 original size:3 final size:3
Alignment explanation
Indices: 110762--110792 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
110752 AACAGAAAAG
*
110762 GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
110793 GTGGATGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:136343 original size:42 final size:42
Alignment explanation
Indices: 136278--136379 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 42
136268 TTGACTATAA
* * *
136278 AATAATAAATATACAC-ACGATATAATGGTATGTATGAGATG
1 AATAATATATAAACACTATGATATAATGGTATGTATGAGATG
*
136319 AATAATTTATAAACACTATGATATAATGGTATGTATGAGATG
1 AATAATATATAAACACTATGATATAATGGTATGTATGAGATG
*
136361 AATAATATATATACACTAT
1 AATAATATATAAACACTAT
136380 ATTAATAGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
41 13 0.24
42 41 0.76
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.33
Consensus pattern (42 bp):
AATAATATATAAACACTATGATATAATGGTATGTATGAGATG
Found at i:136365 original size:21 final size:21
Alignment explanation
Indices: 136299--136366 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
136289 TACACACGAT
136299 ATAATGGTATGTATGAGATGA
1 ATAATGGTATGTATGAGATGA
* * ** *
136320 ATAAT-TTAT-AAACACTATGA
1 ATAATGGTATGTATGA-GATGA
136340 TATAATGGTATGTATGAGATGA
1 -ATAATGGTATGTATGAGATGA
136362 ATAAT
1 ATAAT
136367 ATATATACAC
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 2 0.06
20 7 0.21
21 15 0.45
22 7 0.21
23 2 0.06
ACGTcount: A:0.43, C:0.03, G:0.19, T:0.35
Consensus pattern (21 bp):
ATAATGGTATGTATGAGATGA
Found at i:149423 original size:162 final size:164
Alignment explanation
Indices: 149153--149477 Score: 618
Period size: 162 Copynumber: 2.0 Consensus size: 164
149143 AACCGATAGG
149153 AAAATAAATAAAAATTACAATGGAAACTTGCAATTAGGTGTGTATTAGCAGACAAAATTTCACAT
1 AAAATAAATAAAAATTACAATGGAAACTTGCAATTAGGTGTGTATTAGCA-ACAAAATTTCACAT
149218 GGTTTATGTAATAAATTAAGCCTTACTTTGTTTACAACACAAATCTCAAAGCAAAACCCACTCCT
65 GGTTTATGTAATAAATTAAGCCTTACTTTGTTTACAACACAAATCTCAAAGCAAAACCCACTCCT
*
149283 TTGATTCCTCAGTATTTGCTGCGAAAATACCGCGT
130 TTGATTCCTAAGTATTTGCTGCGAAAATACCGCGT
149318 AAAATAAATAAAAATTACAATGGAAACTTGCAATTA-GTGTGTATTAGC-ACAAAATTTCACATG
1 AAAATAAATAAAAATTACAATGGAAACTTGCAATTAGGTGTGTATTAGCAACAAAATTTCACATG
149381 GTTTATGTAATAAATTAAGCCTTACTTTGTTTACAACACAAATCTCAAAGCAAAACCCACTCCTT
66 GTTTATGTAATAAATTAAGCCTTACTTTGTTTACAACACAAATCTCAAAGCAAAACCCACTCCTT
149446 TGATTCCTAAGTATTTGCTGCGAAAATACCGC
131 TGATTCCTAAGTATTTGCTGCGAAAATACCGC
149478 ACCCATGTTC
Statistics
Matches: 159, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
162 111 0.70
164 12 0.08
165 36 0.23
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (164 bp):
AAAATAAATAAAAATTACAATGGAAACTTGCAATTAGGTGTGTATTAGCAACAAAATTTCACATG
GTTTATGTAATAAATTAAGCCTTACTTTGTTTACAACACAAATCTCAAAGCAAAACCCACTCCTT
TGATTCCTAAGTATTTGCTGCGAAAATACCGCGT
Found at i:152507 original size:27 final size:27
Alignment explanation
Indices: 152465--152517 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
152455 GGGGACTATA
*
152465 GCCATATAAACTAACATATCGACAAAC
1 GCCATATAAACGAACATATCGACAAAC
152492 GCCATATAAACGAACATATCGACAAA
1 GCCATATAAACGAACATATCGACAAA
152518 TGCTAATGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.49, C:0.25, G:0.09, T:0.17
Consensus pattern (27 bp):
GCCATATAAACGAACATATCGACAAAC
Found at i:163139 original size:2 final size:2
Alignment explanation
Indices: 163132--163159 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
163122 TTATAAAAGG
163132 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
163160 CTTAAATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:166040 original size:2 final size:2
Alignment explanation
Indices: 166033--166079 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
166023 CTGACACAAA
166033 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
166075 TC TC T
1 TC TC T
166080 ATATATATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:168489 original size:60 final size:60
Alignment explanation
Indices: 168394--168585 Score: 187
Period size: 60 Copynumber: 3.2 Consensus size: 60
168384 TCATCATATG
* * * * *
168394 TCCTCAAAGTATTAC-TTACATTTTAAATTA-TCCTTAAACTTTTAAATATTCCAATTTTA
1 TCCTCAAACTATGACGTTA-ATTCTAAATTAGTCCTTAAACTTTTAAACATTCCAATTTCA
* * *
168453 TCCCTC-AACTATGAC-TATAATTCTAAATTAGTCCTTAAACTTTTTAACATTTCGATTTCA
1 T-CCTCAAACTATGACGT-TAATTCTAAATTAGTCCTTAAACTTTTAAACATTCCAATTTCA
* * * * *
168513 TTCTCAAACTATGACGTTCATTCTAAATTAGTCCTTAAACTTTTTTTAACATTCCATTTTAA
1 TCCTCAAACTATGACGTTAATTCTAAATTAGTCCTTAAAC--TTTTAAACATTCCAATTTCA
168575 T-CTCAAACTAT
1 TCCTCAAACTAT
168586 ATGTATATAC
Statistics
Matches: 112, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
59 22 0.20
60 62 0.55
61 11 0.10
62 17 0.15
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.44
Consensus pattern (60 bp):
TCCTCAAACTATGACGTTAATTCTAAATTAGTCCTTAAACTTTTAAACATTCCAATTTCA
Found at i:168837 original size:57 final size:57
Alignment explanation
Indices: 168737--168848 Score: 145
Period size: 57 Copynumber: 2.0 Consensus size: 57
168727 GGGGAGCAAG
* * *
168737 TTAGAAAGAGGGTCATAGTTTAGGGATAAAACTAGAATTTTCAAAAGTGTAAGGATT
1 TTAGAAAGAGAGCCATAGTTTAGGGATAAAACTAGAATATTCAAAAGTGTAAGGATT
** * *
168794 TTAGAAAGAGAGCCATAGTTTAGGGATGGAA-TTGAAATATTCAAAAGTTTAAGGA
1 TTAGAAAGAGAGCCATAGTTTAGGGATAAAACTAG-AATATTCAAAAGTGTAAGGA
168849 CCAATTTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
56 2 0.04
57 45 0.96
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.29
Consensus pattern (57 bp):
TTAGAAAGAGAGCCATAGTTTAGGGATAAAACTAGAATATTCAAAAGTGTAAGGATT
Found at i:172675 original size:46 final size:46
Alignment explanation
Indices: 172608--172698 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
172598 CTTTGTTCAT
172608 TTAACTAACATTGTTCATGTTGTTCAATTTTTTGGTAAAGTAATAC
1 TTAACTAACATTGTTCATGTTGTTCAATTTTTTGGTAAAGTAATAC
172654 TTAACTAACATTGTTCATGTTGTTCAATTTTTTGGTAAAGTAATA
1 TTAACTAACATTGTTCATGTTGTTCAATTTTTTGGTAAAGTAATA
172699 TTGTACCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (46 bp):
TTAACTAACATTGTTCATGTTGTTCAATTTTTTGGTAAAGTAATAC
Found at i:174247 original size:529 final size:529
Alignment explanation
Indices: 173249--174308 Score: 2084
Period size: 529 Copynumber: 2.0 Consensus size: 529
173239 AGGACTATAA
173249 TACCAACTAATTTGAATAATTAAATAATATTTTTTTGATAAATTTGGGTGAATATAGAGTAGTAT
1 TACCAACTAATTTGAATAATTAAATAATATTTTTTTGATAAATTTGGGTGAATATAGAGTAGTAT
173314 TTGTTCAAAAAGAAAATTCTACGCCAGGCTTGGCCAGAATAGCAGAGCAAGTACAAGTATTAGTA
66 TTGTTCAAAAAGAAAATTCTACGCCAGGCTTGGCCAGAATAGCAGAGCAAGTACAAGTATTAGTA
173379 GCATAGAAAAAATGCACTCCTCGTCATTAAATTAATGTGTTTACTTTCGGTAATTGTGGCCTCTC
131 GCATAGAAAAAATGCACTCCTCGTCATTAAATTAATGTGTTTACTTTCGGTAATTGTGGCCTCTC
173444 AAGAGAATCGATTACTGCATCTTTGAGGCATTTGCTAGTACTAGTACATCCGAGAATTCTTAATT
196 AAGAGAATCGATTACTGCATCTTTGAGGCATTTGCTAGTACTAGTACATCCGAGAATTCTTAATT
173509 GGCTGGTTGTAAATAGCCCCGGGACTATGGAACAAAGATTATCCCGGACACCTACACCGAGGTAT
261 GGCTGGTTGTAAATAGCCCCGGGACTATGGAACAAAGATTATCCCGGACACCTACACCGAGGTAT
*
173574 TGACGTAGAACATAATGTGATACAATGAGATAGAATGCAATAGAAACAAAGACACAGGGAACGGG
326 TGACGTAGAACATAATGTGATACAATGAGATAGAATCCAATAGAAACAAAGACACAGGGAACGGG
* *
173639 TTACCTGCTCTTAACGGTCAAAGCGAACTCTTTCATTCTGACATTCTGAATTCTTTAATTCAGAA
391 TTACCTGCTCTTAACGGTCAAAGCGAACTATTTCACTCTGACATTCTGAATTCTTTAATTCAGAA
173704 TGAAGACGCAAGTCATATACCGTAATATACCATTAAAACGATACATCGAAACACACCACTAATAA
456 TGAAGACGCAAGTCATATACCGTAATATACCATTAAAACGATACATCGAAACACACCACTAATAA
173769 AATTATTTT
521 AATTATTTT
173778 TACCAACTAATTTGAATAATTAAATAATATTTTTTTGATAAATTTGGGTGAATATAGAGTAGTAT
1 TACCAACTAATTTGAATAATTAAATAATATTTTTTTGATAAATTTGGGTGAATATAGAGTAGTAT
173843 TTGTTCAAAAAGAAAATTCTACGCCAGGCTTGGCCAGAATAGCAGAGCAAGTACAAGTATTAGTA
66 TTGTTCAAAAAGAAAATTCTACGCCAGGCTTGGCCAGAATAGCAGAGCAAGTACAAGTATTAGTA
173908 GCATAGAAAAAATGCACTCCTCGTCATTAAATTAATGTGTTTACTTTCGGTAATTGTGGCCTCTC
131 GCATAGAAAAAATGCACTCCTCGTCATTAAATTAATGTGTTTACTTTCGGTAATTGTGGCCTCTC
173973 AAGAGAATCGATTACTGCATCTTTGAGGCATTTGCTAGTACTAGTACATCCGAGAATTCTTAATT
196 AAGAGAATCGATTACTGCATCTTTGAGGCATTTGCTAGTACTAGTACATCCGAGAATTCTTAATT
174038 GGCTGGTTGTAAATAGCCCCGGGACTATGGAACAAAGATTATCCCGGACACCTACACCGAGGTAT
261 GGCTGGTTGTAAATAGCCCCGGGACTATGGAACAAAGATTATCCCGGACACCTACACCGAGGTAT
*
174103 TGACGTAGAACATAATGTGATACAATGAGATAGAATCCAATAGAAACAAAGACATAGGGAACGGG
326 TGACGTAGAACATAATGTGATACAATGAGATAGAATCCAATAGAAACAAAGACACAGGGAACGGG
174168 TTACCTGCTCTTAACGGTCAAAGCGAACTATTTCACTCTGACATTCTGAATTCTTTAATTCAGAA
391 TTACCTGCTCTTAACGGTCAAAGCGAACTATTTCACTCTGACATTCTGAATTCTTTAATTCAGAA
174233 TGAAGACGCAAGTCATATACCGTAATATACCATTAAAACGATACATCGAAACACACCACTAATAA
456 TGAAGACGCAAGTCATATACCGTAATATACCATTAAAACGATACATCGAAACACACCACTAATAA
174298 AATTATTTT
521 AATTATTTT
174307 TA
1 TA
174309 TTATGTAAAT
Statistics
Matches: 527, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
529 527 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (529 bp):
TACCAACTAATTTGAATAATTAAATAATATTTTTTTGATAAATTTGGGTGAATATAGAGTAGTAT
TTGTTCAAAAAGAAAATTCTACGCCAGGCTTGGCCAGAATAGCAGAGCAAGTACAAGTATTAGTA
GCATAGAAAAAATGCACTCCTCGTCATTAAATTAATGTGTTTACTTTCGGTAATTGTGGCCTCTC
AAGAGAATCGATTACTGCATCTTTGAGGCATTTGCTAGTACTAGTACATCCGAGAATTCTTAATT
GGCTGGTTGTAAATAGCCCCGGGACTATGGAACAAAGATTATCCCGGACACCTACACCGAGGTAT
TGACGTAGAACATAATGTGATACAATGAGATAGAATCCAATAGAAACAAAGACACAGGGAACGGG
TTACCTGCTCTTAACGGTCAAAGCGAACTATTTCACTCTGACATTCTGAATTCTTTAATTCAGAA
TGAAGACGCAAGTCATATACCGTAATATACCATTAAAACGATACATCGAAACACACCACTAATAA
AATTATTTT
Found at i:174369 original size:18 final size:18
Alignment explanation
Indices: 174330--174365 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
174320 TTAGAACGTA
*
174330 TAATGATTTATATAAAAT
1 TAATCATTTATATAAAAT
174348 TAATCATTTAT-TAAAAT
1 TAATCATTTATATAAAAT
174365 T
1 T
174366 TAATTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (18 bp):
TAATCATTTATATAAAAT
Found at i:174876 original size:18 final size:19
Alignment explanation
Indices: 174853--174900 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
174843 GAACCGTCCC
174853 AAAATAATATATTTATT-A
1 AAAATAATATATTTATTCA
*
174871 AAAATAATATTTTTATTCA
1 AAAATAATATATTTATTCA
174890 ATAAA-AATATA
1 A-AAATAATATA
174901 GATTTGATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 16 0.62
19 7 0.27
20 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATAATATATTTATTCA
Found at i:176788 original size:2 final size:2
Alignment explanation
Indices: 176783--176808 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
176773 ATTCTCTCTC
176783 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
176809 TAGTCACGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:183029 original size:42 final size:42
Alignment explanation
Indices: 182964--183043 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
182954 TGGATGGAGG
* * * *
182964 TGGTGCATTGGTTGACATGGTCTTGGGTGGAGGTGGTGATGC
1 TGGTGCATTGATTGACATAGTCTTGGATGGAGATGGTGATGC
*
183006 TGGTGCATTGATTGATATAGTCTTGGATGGAGATGGTG
1 TGGTGCATTGATTGACATAGTCTTGGATGGAGATGGTG
183044 CATTGTTTCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.16, C:0.07, G:0.41, T:0.35
Consensus pattern (42 bp):
TGGTGCATTGATTGACATAGTCTTGGATGGAGATGGTGATGC
Found at i:189941 original size:2 final size:2
Alignment explanation
Indices: 189934--189964 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
189924 GCACCTACTT
189934 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
189965 GATTTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:190010 original size:2 final size:2
Alignment explanation
Indices: 190003--190047 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
189993 ATTGAAAATA
190003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
190045 AT A
1 AT A
190048 AAGATTAGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:191811 original size:12 final size:12
Alignment explanation
Indices: 191773--191811 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
191763 TGAAAAAATT
*
191773 CATATATATATA
1 CATACATATATA
*
191785 CATACATACATA
1 CATACATATATA
*
191797 CATACATATAAA
1 CATACATATATA
191809 CAT
1 CAT
191812 GAGCGCACGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (12 bp):
CATACATATATA
Found at i:192908 original size:15 final size:15
Alignment explanation
Indices: 192888--192920 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
192878 TTGCATTTGC
192888 ATTTTAATTAAAGAT
1 ATTTTAATTAAAGAT
192903 ATTTTAATTAAAGAT
1 ATTTTAATTAAAGAT
192918 ATT
1 ATT
192921 ATATAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (15 bp):
ATTTTAATTAAAGAT
Found at i:197605 original size:24 final size:23
Alignment explanation
Indices: 197548--197605 Score: 55
Period size: 24 Copynumber: 2.4 Consensus size: 23
197538 CAAATTTTAA
*
197548 TTAAATAAAATATATTTTTAAAAT
1 TTAAA-AAAATATATTTATAAAAT
*
197572 TTAGTAAAAATA-ATTATATAAAAT
1 TTA-AAAAAATATATT-TATAAAAT
197596 TTAAACAAAA
1 TTAAA-AAAA
197606 ATTATTAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
23 4 0.14
24 23 0.82
25 1 0.04
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (23 bp):
TTAAAAAAATATATTTATAAAAT
Found at i:197790 original size:6 final size:6
Alignment explanation
Indices: 197779--197935 Score: 143
Period size: 6 Copynumber: 26.2 Consensus size: 6
197769 CTATCAATTT
* *
197779 CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAGC CTCAGC
1 CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC
* * * * * * * *
197827 CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC
1 CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC
* * * * * * *
197875 CTCAGC CTCAAC CCCAAC CCCAAC CCCAAC CCCAAC CCCAAC CCCAAC
1 CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC
* *
197923 CCCAAC CCCAAC C
1 CTCAAC CTCAAC C
197936 CATGCAATAA
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 148 1.00
ACGTcount: A:0.26, C:0.55, G:0.07, T:0.11
Consensus pattern (6 bp):
CTCAAC
Found at i:198611 original size:152 final size:150
Alignment explanation
Indices: 198390--198693 Score: 457
Period size: 152 Copynumber: 2.0 Consensus size: 150
198380 TTTAGTATAT
* * **
198390 TAGAGGTTCTTATAATAATAATTTTGTTAAACTTTATATTTTTATTTTATTTTAAAATAATTAGA
1 TAGAGGTTCTTATAATAATAATTTTATAAAACTTTATATTTTTATTGCATTTTAAAATAATTAGA
* * *
198455 AATATTAAACTCATCTATCTCAATAG-TAAAAGAAAAATTATTTTTCTTATAAGTTTTAAAATCA
66 AATATTAAACCCATCTATCTCAA-AGATAAAAGAAAAATTATTTTTCTTACAAGTCTTAAAATCA
* *
198519 ATCAGTTACATCTATATAGTA
130 ATAAGTTACATCTATATAATA
*
198540 TAGAGGTTGTTATAATAATAATTTTCATAAAACTTTATATTTTTTATTGCATTTTAAAATAATTA
1 TAGAGGTTCTTATAATAATAATTTT-ATAAAACTTTATA-TTTTTATTGCATTTTAAAATAATTA
*
198605 GAAATATTAAACCCATCTATCTCAACGATAAAAGAAAAATTATTTTTCTTACAAGTCTTAAAATC
64 GAAATATTAAACCCATCTATCTCAAAGATAAAAGAAAAATTATTTTTCTTACAAGTCTTAAAATC
* *
198670 AATAAGTTTCATCTGTATAATA
129 AATAAGTTACATCTATATAATA
198692 TA
1 TA
198694 TATGCGACTA
Statistics
Matches: 138, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
150 24 0.17
151 12 0.09
152 102 0.74
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (150 bp):
TAGAGGTTCTTATAATAATAATTTTATAAAACTTTATATTTTTATTGCATTTTAAAATAATTAGA
AATATTAAACCCATCTATCTCAAAGATAAAAGAAAAATTATTTTTCTTACAAGTCTTAAAATCAA
TAAGTTACATCTATATAATA
Found at i:206137 original size:10 final size:10
Alignment explanation
Indices: 206122--206150 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
206112 ACTTTCCCAT
206122 GTTTGTTCAA
1 GTTTGTTCAA
206132 GTTTGTTCAA
1 GTTTGTTCAA
206142 GTTT-TTCAA
1 GTTTGTTCAA
206151 TGGAATTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.21, C:0.10, G:0.17, T:0.52
Consensus pattern (10 bp):
GTTTGTTCAA
Found at i:207272 original size:17 final size:17
Alignment explanation
Indices: 207227--207273 Score: 85
Period size: 17 Copynumber: 2.8 Consensus size: 17
207217 TATGGAATTT
*
207227 GATTCCAATTCATGATA
1 GATTCCAATTCCTGATA
207244 GATTCCAATTCCTGATA
1 GATTCCAATTCCTGATA
207261 GATTCCAATTCCT
1 GATTCCAATTCCT
207274 TCACAGATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (17 bp):
GATTCCAATTCCTGATA
Found at i:220134 original size:21 final size:22
Alignment explanation
Indices: 220108--220156 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
220098 AACACGAATT
220108 TTCCAAATT-CGTTGCGATTTA
1 TTCCAAATTCCGTTGCGATTTA
220129 TTCCAAATTCGCGTTGCGATTTA
1 TTCCAAATTC-CGTTGCGATTTA
220152 TTCCA
1 TTCCA
220157 TTTGTTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 9 0.35
23 17 0.65
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.41
Consensus pattern (22 bp):
TTCCAAATTCCGTTGCGATTTA
Found at i:222228 original size:13 final size:14
Alignment explanation
Indices: 222210--222257 Score: 64
Period size: 13 Copynumber: 3.5 Consensus size: 14
222200 GACCGGTCTA
*
222210 ACCCGA-CCGAACG
1 ACCCGACCCGACCG
222223 ACCCGACCCGACCG
1 ACCCGACCCGACCG
222237 A-CCGACCCGACCCG
1 ACCCGACCCGA-CCG
222251 ACCCGAC
1 ACCCGAC
222258 TGTTGACCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 15 0.48
14 11 0.35
15 5 0.16
ACGTcount: A:0.25, C:0.54, G:0.21, T:0.00
Consensus pattern (14 bp):
ACCCGACCCGACCG
Found at i:222231 original size:5 final size:5
Alignment explanation
Indices: 222221--222257 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
222211 CCCGACCGAA
222221 CGACC CGACC CGA-C CGA-C CGACC CGACC CGACC CGAC
1 CGACC CGACC CGACC CGACC CGACC CGACC CGACC CGAC
222258 TGTTGACCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 8 0.26
5 23 0.74
ACGTcount: A:0.22, C:0.57, G:0.22, T:0.00
Consensus pattern (5 bp):
CGACC
Found at i:222231 original size:18 final size:18
Alignment explanation
Indices: 222210--222253 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
222200 GACCGGTCTA
222210 ACCCGACCGAACGACCCG
1 ACCCGACCGAACGACCCG
*
222228 ACCCGACCGACCGACCCG
1 ACCCGACCGAACGACCCG
222246 ACCCGACC
1 ACCCGACC
222254 CGACTGTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.25, C:0.55, G:0.20, T:0.00
Consensus pattern (18 bp):
ACCCGACCGAACGACCCG
Found at i:234379 original size:60 final size:59
Alignment explanation
Indices: 234245--234380 Score: 150
Period size: 60 Copynumber: 2.3 Consensus size: 59
234235 ATCCTTATAC
* * * ** *
234245 TTTTAAATATTTTAA-TACATCATCAAATGATGTCTCTCATTTAAATTAGTCTTTAAAT
1 TTTTAAATATTTTAATTTCATCATCAAATGAAGACTCTCATTTAAATTAGTCAATAAAG
* * * *
234303 TTTTAAACATTCTAATTTCATGC-TCAAATTAAGACTCTCATTCTAAATTGGTCAATAAAG
1 TTTTAAATATTTTAATTTCAT-CATCAAATGAAGACTCTCATT-TAAATTAGTCAATAAAG
234363 TTTTAAATATTTTAATTT
1 TTTTAAATATTTTAATTT
234381 TATTTCCAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
58 13 0.21
59 20 0.32
60 30 0.48
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (59 bp):
TTTTAAATATTTTAATTTCATCATCAAATGAAGACTCTCATTTAAATTAGTCAATAAAG
Found at i:234640 original size:59 final size:60
Alignment explanation
Indices: 234505--234640 Score: 175
Period size: 59 Copynumber: 2.3 Consensus size: 60
234495 GATCGAAACG
* * * * * *
234505 TTAAAAAATTTAAAAATTAATTTAGAATGAAAGTCCTAATTTAAAGATGAAATTAAAATA
1 TTAAAAAATTTAAGAATTAATTTAGAATGAAAATCATAATCTAAAAATAAAATTAAAATA
* * *
234565 TTAAAAAATATGAGAATTAATTTATAAT-AAAATCATAATCTAAAAATAAAATTAAAATA
1 TTAAAAAATTTAAGAATTAATTTAGAATGAAAATCATAATCTAAAAATAAAATTAAAATA
*
234624 TTTAAAAATTTAAGAAT
1 TTAAAAAATTTAAGAAT
234641 AAGAGTTAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
59 40 0.62
60 24 0.38
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (60 bp):
TTAAAAAATTTAAGAATTAATTTAGAATGAAAATCATAATCTAAAAATAAAATTAAAATA
Found at i:248933 original size:31 final size:30
Alignment explanation
Indices: 248873--248933 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
248863 AAAGTTTGAT
*
248873 TTAATCTCTTTAAAATTTATAAAATTATAA
1 TTAATCTCTTTAAAATCTATAAAATTATAA
* * *
248903 TTAATTTCTTTAAAATACTGTACAATTATAA
1 TTAATCTCTTTAAAAT-CTATAAAATTATAA
248934 AATAATATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (30 bp):
TTAATCTCTTTAAAATCTATAAAATTATAA
Found at i:248963 original size:19 final size:20
Alignment explanation
Indices: 248935--248985 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
248925 CAATTATAAA
*
248935 ATAATATATTAGT-AAAATT
1 ATAATATATTACTAAAAATT
* *
248954 ATAATTTATTCCTAAAAATT
1 ATAATATATTACTAAAAATT
248974 ATAATATCATTA
1 ATAATAT-ATTA
248986 ATATTATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 10 0.40
20 12 0.48
21 3 0.12
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATATTACTAAAAATT
Found at i:277449 original size:22 final size:22
Alignment explanation
Indices: 277425--277778 Score: 439
Period size: 22 Copynumber: 16.6 Consensus size: 22
277415 TCTATTTTAA
* *
277425 ATTTATTTTAAAATATAAATTA
1 ATTTATTTTAAAATATAGATTG
277447 ATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAAATATAGATTG
277469 ATTTATTTT-AAA-ATAGATTG
1 ATTTATTTTAAAATATAGATTG
*
277489 ATTTATTTTAAAATATAGATTA
1 ATTTATTTTAAAATATAGATTG
**
277511 ATTTATTTTAAAATATA-A-AA
1 ATTTATTTTAAAATATAGATTG
*
277531 ATTTTATTTTAAAATATGGATTG
1 A-TTTATTTTAAAATATAGATTG
***
277554 ATTTATTTTAAAATAT-GAAAA
1 ATTTATTTTAAAATATAGATTG
277575 ATTTTATTTTAAAATATAGATTG
1 A-TTTATTTTAAAATATAGATTG
277598 ATTTATTTTAAAAT-TA-ATTG
1 ATTTATTTTAAAATATAGATTG
277618 ATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAAATATAGATTG
277640 ATTTATTTTAAAATAT-GAATTG
1 ATTTATTTTAAAATATAG-ATTG
* **
277662 A--TATTTTAAAATATGGA-AA
1 ATTTATTTTAAAATATAGATTG
*
277681 ATTTATTTT-AAATATGGATTG
1 ATTTATTTTAAAATATAGATTG
277702 ATTTATTTTAAAATA-A-ATTG
1 ATTTATTTTAAAATATAGATTG
*
277722 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATAGATTG
*
277744 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATAGATTG
*
277766 ATTTATTTAAAAA
1 ATTTATTTTAAAA
277779 AATTATTATT
Statistics
Matches: 295, Mismatches: 20, Indels: 34
0.85 0.06 0.10
Matches are distributed among these distances:
19 1 0.00
20 79 0.27
21 46 0.16
22 165 0.56
23 4 0.01
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (22 bp):
ATTTATTTTAAAATATAGATTG
Found at i:277494 original size:64 final size:65
Alignment explanation
Indices: 277425--277778 Score: 437
Period size: 64 Copynumber: 5.5 Consensus size: 65
277415 TCTATTTTAA
*
277425 ATTTATTTTAAAATATAAATTAATTTATTTTAAAATATAGATTGATTTATTTTAAAATA-GATTG
1 ATTTATTTTAAAATATAGATTAATTTATTTTAAAATATAGATTGATTTATTTTAAAATAGGATTG
**
277489 ATTTATTTTAAAATATAGATTAATTTATTTTAAAATATA-A-AAATTTTATTTTAAAATATGGAT
1 ATTTATTTTAAAATATAGATTAATTTATTTTAAAATATAGATTGA-TTTATTTTAAAATA-GGAT
277552 TG
64 TG
**
277554 ATTTATTTTAAAATAT-GAAAAATTTTATTTTAAAATATAGATTGATTTATTTTAAAATTA--AT
1 ATTTATTTTAAAATATAGATTAA-TTTATTTTAAAATATAGATTGATTTATTTTAAAA-TAGGAT
277616 TG
64 TG
*
277618 ATTTATTTTAAAATATAGATTGATTTATTTTAAAATAT-GAATTGA--TATTTTAAAATATGGA-
1 ATTTATTTTAAAATATAGATTAATTTATTTTAAAATATAG-ATTGATTTATTTTAAAATA-GGAT
**
277679 AA
64 TG
* *
277681 ATTTATTTT-AAATATGGATTGATTTATTTTAAAATA-A-ATTGATTTATTTTAAAATATGGATT
1 ATTTATTTTAAAATATAGATTAATTTATTTTAAAATATAGATTGATTTATTTTAAAATA-GGATT
277743 G
65 G
* * *
277744 ATTTATTTTAAAATATGGATTGATTTATTTAAAAA
1 ATTTATTTTAAAATATAGATTAATTTATTTTAAAA
277779 AATTATTATT
Statistics
Matches: 257, Mismatches: 16, Indels: 34
0.84 0.05 0.11
Matches are distributed among these distances:
60 5 0.02
61 2 0.01
62 53 0.21
63 34 0.13
64 107 0.42
65 40 0.16
66 13 0.05
67 3 0.01
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (65 bp):
ATTTATTTTAAAATATAGATTAATTTATTTTAAAATATAGATTGATTTATTTTAAAATAGGATTG
Found at i:277503 original size:42 final size:42
Alignment explanation
Indices: 277425--277778 Score: 414
Period size: 42 Copynumber: 8.3 Consensus size: 42
277415 TCTATTTTAA
* *
277425 ATTTATTTTAAAATATAAATTAATTTATTTTAAAATATAGATTG
1 ATTTATTTT-AAA-ATAGATTGATTTATTTTAAAATATAGATTG
*
277469 ATTTATTTTAAAATAGATTGATTTATTTTAAAATATAGATTA
1 ATTTATTTTAAAATAGATTGATTTATTTTAAAATATAGATTG
* *** *
277511 ATTTATTTTAAAATATAAAAATTTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATAGATTGA-TTTATTTTAAAATATAGATTG
***
277554 ATTTATTTTAAAATATGAAAAATTTTATTTTAAAATATAGATTG
1 ATTTATTTTAAAATA-GATTGA-TTTATTTTAAAATATAGATTG
277598 ATTTATTTTAAAATTA-ATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAAA-TAGATTGATTTATTTTAAAATATAGATTG
* **
277640 ATTTATTTTAAAATATGAATTGA--TATTTTAAAATATGGA-AA
1 ATTTATTTTAAAATA-G-ATTGATTTATTTTAAAATATAGATTG
*
277681 ATTTATTTTAAATATGGATTGATTTATTTTAAAATA-A-ATTG
1 ATTTATTTTAAA-ATAGATTGATTTATTTTAAAATATAGATTG
*
277722 ATTTATTTTAAAATATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATA--GATTGATTTATTTTAAAATATAGATTG
*
277766 ATTTATTTAAAAA
1 ATTTATTTTAAAA
277779 AATTATTATT
Statistics
Matches: 272, Mismatches: 24, Indels: 28
0.84 0.07 0.09
Matches are distributed among these distances:
40 8 0.03
41 27 0.10
42 127 0.47
43 39 0.14
44 69 0.25
45 2 0.01
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (42 bp):
ATTTATTTTAAAATAGATTGATTTATTTTAAAATATAGATTG
Found at i:277822 original size:104 final size:102
Alignment explanation
Indices: 277425--277777 Score: 329
Period size: 104 Copynumber: 3.3 Consensus size: 102
277415 TCTATTTTAA
* * ** *
277425 ATTTATTTTAAAATATAAATTAATTTATTTTAAAATATAGATTGATTTATTTTAAA-AT-AGATT
1 ATTTATTTTAAAATATGAATTGA--TATTTT-AAA-ATAGA-AAATTTATTGTAAATATGA-ATT
* * **
277488 GATTTATTTTAAAATATAGATTAATTTATTTTAAAATATA-A-AA
60 GATTTATTTCAAAATA-A-ATTGATTTATTTTAAAATATAGATTG
* *
277531 ATTTTATTTTAAAATATGGATTGATTTATTTTAAAATATGAAAAATTTTATTTTAAAATAT-AGA
1 A-TTTATTTTAAAATATGAATTGA--TATTTTAAAATA-G-AAAA-TTTATTGT-AAATATGA-A
* *
277595 TTGATTTATTTTAAAATTAATTGATTTATTTTAAAATATAGATTG
58 TTGATTTATTTCAAAATAAATTGATTTATTTTAAAATATAGATTG
* *
277640 ATTTATTTTAAAATATGAATTGATATTTTAAAATATGGAAAATTTATTTTAAATATGGATTGATT
1 ATTTATTTTAAAATATGAATTGATATTTTAAAATA--GAAAATTTATTGTAAATATGAATTGATT
* *
277705 TATTTTAAAATAAATTGATTTATTTTAAAATATGGATTG
64 TATTTCAAAATAAATTGATTTATTTTAAAATATAGATTG
* *
277744 ATTTATTTTAAAATATGGATTGATTTATTTAAAA
1 ATTTATTTTAAAATATGAATTGATAT-TTTAAAA
277778 AAATTATTAT
Statistics
Matches: 220, Mismatches: 16, Indels: 23
0.85 0.06 0.09
Matches are distributed among these distances:
104 74 0.34
105 18 0.08
106 22 0.10
107 57 0.26
108 26 0.12
109 23 0.10
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (102 bp):
ATTTATTTTAAAATATGAATTGATATTTTAAAATAGAAAATTTATTGTAAATATGAATTGATTTA
TTTCAAAATAAATTGATTTATTTTAAAATATAGATTG
Found at i:277855 original size:31 final size:31
Alignment explanation
Indices: 277797--277856 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
277787 TTGTAGTATG
*
277797 AATTATTTAAATTTCAATATTATAAAACTAA
1 AATTATTTAAATTTCAATATTACAAAACTAA
*
277828 AATTATTTAAATTT-AAGTATTGCAAAACT
1 AATTATTTAAATTTCAA-TATTACAAAACT
277857 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (31 bp):
AATTATTTAAATTTCAATATTACAAAACTAA
Found at i:282134 original size:35 final size:36
Alignment explanation
Indices: 282066--282136 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 36
282056 AATTCATGAT
* *
282066 CAAAATTCCAAAACACTTCAATTGCATTCTAAACCC
1 CAAAATTCCAAAACACTTCAATTACATTATAAACCC
* * *
282102 CAAAA-TCCAAAATACTTTAATTATATTATAAACCC
1 CAAAATTCCAAAACACTTCAATTACATTATAAACCC
282137 TAAATTAGAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 25 0.83
36 5 0.17
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.28
Consensus pattern (36 bp):
CAAAATTCCAAAACACTTCAATTACATTATAAACCC
Found at i:283700 original size:28 final size:27
Alignment explanation
Indices: 283660--283713 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
283650 GTTTGAATAG
* * *
283660 TTTTTTTATATTTTATATATTTTATAA
1 TTTTTTTAAATTTAATATATATTATAA
283687 TTTTTTTCAAATTTAATATATATTATA
1 TTTTTTT-AAATTTAATATATATTATA
283714 TGTTGTGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTTTTAAATTTAATATATATTATAA
Found at i:285504 original size:63 final size:64
Alignment explanation
Indices: 285426--285552 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
285416 TGTATGTATA
*
285426 TTTTCAAATGAATCTTGTAA-TTTTTTTGACAAAGAAAATGAATCTTATGATTTTGATGGACAT
1 TTTTCAAATGAATCTTGTAATTTTTTTTGACAAAGAAAATGAATCTTATGATTTTGATAGACAT
*
285489 TTTTCAAATGAATCTTGTAATTTTTTTTTACAAAGAAAATGAATCTTATGATTTTGATAGACAT
1 TTTTCAAATGAATCTTGTAATTTTTTTTGACAAAGAAAATGAATCTTATGATTTTGATAGACAT
285553 GAAATAATTT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 20 0.33
64 41 0.67
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (64 bp):
TTTTCAAATGAATCTTGTAATTTTTTTTGACAAAGAAAATGAATCTTATGATTTTGATAGACAT
Found at i:285844 original size:47 final size:47
Alignment explanation
Indices: 285782--285876 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
285772 TTTTAATGTA
285782 TATATATTTGTTACATCTATGATTTTATTCTATATATTATTTTTAAT
1 TATATATTTGTTACATCTATGATTTTATTCTATATATTATTTTTAAT
285829 TATATATTTGTTACATCTATGATTTTATTCTATATATTATTTTTAAT
1 TATATATTTGTTACATCTATGATTTTATTCTATATATTATTTTTAAT
285876 T
1 T
285877 TTATCTCAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.60
Consensus pattern (47 bp):
TATATATTTGTTACATCTATGATTTTATTCTATATATTATTTTTAAT
Found at i:299562 original size:23 final size:23
Alignment explanation
Indices: 299536--299583 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
299526 ATAAAGTACA
*
299536 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
299559 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
299582 AT
1 AT
299584 TTACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:300330 original size:18 final size:18
Alignment explanation
Indices: 300307--300343 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
300297 GCCGAAATAT
300307 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
300325 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
300343 A
1 A
300344 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:300573 original size:23 final size:23
Alignment explanation
Indices: 300547--300611 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
300537 ATGCGAGATA
300547 GATACCTATTACATTATATAAAC
1 GATACCTATTACATTATATAAAC
**
300570 GATACCTATTACATTATATAAGG
1 GATACCTATTACATTATATAAAC
* *
300593 GCTACCTATTACATCATAT
1 GATACCTATTACATTATAT
300612 GTTTACCTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.35
Consensus pattern (23 bp):
GATACCTATTACATTATATAAAC
Found at i:301004 original size:23 final size:23
Alignment explanation
Indices: 300978--301039 Score: 81
Period size: 22 Copynumber: 2.7 Consensus size: 23
300968 ATATAACCAT
300978 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
301001 TACCTATTACA-TATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
301023 TACCTATTACATCATAT
1 TACCTATTACATTATAT
301040 GTTTACCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 19 0.56
23 15 0.44
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.35
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:301418 original size:427 final size:430
Alignment explanation
Indices: 300549--301566 Score: 1992
Period size: 427 Copynumber: 2.4 Consensus size: 430
300539 GCGAGATAGA
300549 TACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGT
1 TACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGT
300614 TTACCTATTATATTGAAAGTGTCCATACTTTTTAT-AAAAGGATCGATACTTTTTTTAAAACTTA
66 TTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTA
300678 TGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATA
131 TGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATA
300743 ATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTA
196 ATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTA
300808 AATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATT
261 AATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATT
300873 AATATCTTAAAACTCACTCAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGA
326 AATATCTTAAAACTCACTCAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGA
300938 CACTTTTATAAAAAGGATAGACACTTTACAATATAACCAT
391 CACTTTTATAAAAAGGATAGACACTTTACAATATAACCAT
300978 TACCTATTACATTATATAAACGATACCTATTACA-TATATAAGGGCTACCTATTACATCATATGT
1 TACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGT
301042 TTACCTA-T-TATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTA
66 TTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTA
301105 TGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATA
131 TGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATA
301170 ATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTT-
196 ATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTA
301234 AATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATT
261 AATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATT
301299 AATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGG
326 AATATCTTAAAACTCACTC-AAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGG
301364 ACACTTTTATAAAAAGGATAGACACTTTACAATATAACCAT
390 ACACTTTTATAAAAAGGATAGACACTTTACAATATAACCAT
301405 TACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGT
1 TACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGT
301470 TTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTA
66 TTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTA
301535 TGTAATTTATGTTTCAATTTTTTTAACAGTGT
131 TGTAATTTATGTTTCAATTTTTTTAACAGTGT
301567 ACTGCGAATT
Statistics
Matches: 584, Mismatches: 0, Indels: 9
0.98 0.00 0.02
Matches are distributed among these distances:
426 109 0.19
427 279 0.48
428 74 0.13
429 35 0.06
430 87 0.15
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.40
Consensus pattern (430 bp):
TACCTATTACATTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGT
TTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTA
TGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATA
ATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTA
AATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATT
AATATCTTAAAACTCACTCAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGA
CACTTTTATAAAAAGGATAGACACTTTACAATATAACCAT
Found at i:301420 original size:21 final size:20
Alignment explanation
Indices: 301390--301443 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
301380 GATAGACACT
*
301390 TTACAATATAACCATTACCTA
1 TTACATTATAACCA-TACCTA
*
301411 TTACATTATATAAACGATACCTA
1 TTACA-T-TAT-AACCATACCTA
301434 TTACATTATA
1 TTACATTATA
301444 TAAGGGCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 1 0.04
23 14 0.50
24 4 0.14
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TTACATTATAACCATACCTA
Found at i:301431 original size:23 final size:23
Alignment explanation
Indices: 301405--301467 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
301395 ATATAACCAT
301405 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
301428 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
301451 TACCTATTACATCATAT
1 TACCTATTACATTATAT
301468 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:302647 original size:21 final size:21
Alignment explanation
Indices: 302621--302663 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
302611 ATTCTGGGTT
* *
302621 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
302642 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
302663 A
1 A
302664 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:302765 original size:68 final size:69
Alignment explanation
Indices: 302643--302796 Score: 211
Period size: 69 Copynumber: 2.2 Consensus size: 69
302633 ACCCATTCAA
* * *
302643 GGGGAACCGATACCCCTTCAACGAATATGAAATTCCAGAATGCTAGAGGGGAATCGGTACCCCCA
1 GGGGAACCGATACCCCCTCAACCAATATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCCA
*
302708 GGGG
66 AGGG
* * * * *
302712 GGGGAACCGATACCCCCTCATCCTATATGAAATTCCAGACTGCTTGA-GGGAATCGATACCCCTA
1 GGGGAACCGATACCCCCTCAACCAATATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCCA
302776 AGGG
66 AGGG
*
302780 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
302797 ATGAGAAAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
68 34 0.45
69 41 0.55
ACGTcount: A:0.28, C:0.28, G:0.27, T:0.18
Consensus pattern (69 bp):
GGGGAACCGATACCCCCTCAACCAATATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCCA
AGGG
Found at i:303136 original size:29 final size:29
Alignment explanation
Indices: 303102--303173 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
303092 CATATTATGA
*
303102 TACATGACATGAATTCGTATTAAAGGTAT
1 TACATGACATGAATTCATATTAAAGGTAT
* *
303131 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAAGGTAT
303160 TACATGACATGAAT
1 TACATGACATGAAT
303174 ATGCAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAAGGTAT
Found at i:303496 original size:23 final size:23
Alignment explanation
Indices: 303466--303535 Score: 140
Period size: 23 Copynumber: 3.0 Consensus size: 23
303456 CTTATGGACA
303466 AAATTCTACGGGCACTTCGGTGC
1 AAATTCTACGGGCACTTCGGTGC
303489 AAATTCTACGGGCACTTCGGTGC
1 AAATTCTACGGGCACTTCGGTGC
303512 AAATTCTACGGGCACTTCGGTGC
1 AAATTCTACGGGCACTTCGGTGC
303535 A
1 A
303536 TTTATACGAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
AAATTCTACGGGCACTTCGGTGC
Found at i:309597 original size:21 final size:21
Alignment explanation
Indices: 309571--309613 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
309561 ATTCTGGGTT
* *
309571 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
309592 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
309613 A
1 A
309614 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:309689 original size:68 final size:69
Alignment explanation
Indices: 309593--309746 Score: 220
Period size: 68 Copynumber: 2.2 Consensus size: 69
309583 ACCCATTCAA
* * * *
309593 GGGGAACCGATACCCCTTCAACGAATATGAAATTCCAGAATGCTAGAGGGGAATCGGTACCCC-C
1 GGGGAACCGATACCCCCTCAACCAATATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCTA
309657 AGGG
66 AGGG
* * * *
309661 GGGGAACCGATACCCCCTCATCCTATATGAAATTCCAGACTGCTTGAGGGGAATCGATACCCCTA
1 GGGGAACCGATACCCCCTCAACCAATATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCTA
309726 AGGG
66 AGGG
*
309730 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
309747 ATGAGAAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
68 56 0.74
69 20 0.26
ACGTcount: A:0.28, C:0.28, G:0.27, T:0.18
Consensus pattern (69 bp):
GGGGAACCGATACCCCCTCAACCAATATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCTA
AGGG
Found at i:310086 original size:29 final size:29
Alignment explanation
Indices: 310052--310123 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
310042 CATATTATGA
*
310052 TACATGACATGAATTCGTATTAAAGGTAT
1 TACATGACATGAATTCATATTAAAGGTAT
* *
310081 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAAGGTAT
310110 TACATGACATGAAT
1 TACATGACATGAAT
310124 ATGCAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAAGGTAT
Found at i:310446 original size:23 final size:23
Alignment explanation
Indices: 310416--310485 Score: 140
Period size: 23 Copynumber: 3.0 Consensus size: 23
310406 CTTATGGACA
310416 AAATTCTACGGGCACTTCGGTGC
1 AAATTCTACGGGCACTTCGGTGC
310439 AAATTCTACGGGCACTTCGGTGC
1 AAATTCTACGGGCACTTCGGTGC
310462 AAATTCTACGGGCACTTCGGTGC
1 AAATTCTACGGGCACTTCGGTGC
310485 A
1 A
310486 TTTATACGAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
AAATTCTACGGGCACTTCGGTGC
Found at i:313261 original size:184 final size:184
Alignment explanation
Indices: 312742--313594 Score: 1606
Period size: 184 Copynumber: 4.7 Consensus size: 184
312732 TTTTAAATGG
* *
312742 TATGGACATAAAGTACCGACACAATATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
*
312807 TAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
312872 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
312926 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACC---TCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
312988 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
*
313053 GATGTGTAAAATGTCGACACTTTTTT-AATTGTATCGACACATTTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACA-TTTTTCTTCCAA
313107 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
313172 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
*
313237 GATGTGTAAAATGTCGACACTTTTTTAAATTGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
313291 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
313356 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
313421 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
131 GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
313475 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
1 TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
**
313540 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTTTATTATAAT
66 TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAT
313595 ATGTTGAAAG
Statistics
Matches: 657, Mismatches: 7, Indels: 10
0.97 0.01 0.01
Matches are distributed among these distances:
180 14 0.02
181 163 0.25
184 465 0.71
185 15 0.02
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (184 bp):
TATGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCA
TAAGACCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCC
GATGTGTAAAATGTCGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAA
Found at i:314971 original size:3 final size:3
Alignment explanation
Indices: 314963--315049 Score: 84
Period size: 3 Copynumber: 29.0 Consensus size: 3
314953 ACTTGTTTGG
* * * **
314963 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * * *
315011 AGC TTC ATC GTC ATC ATC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
315050 GTCAGCTTCA
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.24, C:0.34, G:0.06, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:314986 original size:18 final size:18
Alignment explanation
Indices: 314963--315064 Score: 87
Period size: 18 Copynumber: 5.7 Consensus size: 18
314953 ACTTGTTTGG
314963 ATCATCATCTTCATCATC
1 ATCATCATCTTCATCATC
* *
314981 ATCATCATCATCGTCATC
1 ATCATCATCTTCATCATC
* ** * *
314999 ATCTTCATCGCCAGCTTC
1 ATCATCATCTTCATCATC
* *
315017 ATCGTCATCATCATCATC
1 ATCATCATCTTCATCATC
* *
315035 ATCGTCATCTTCATCGTC
1 ATCATCATCTTCATCATC
* *
315053 AGCTTCATCTTC
1 ATCATCATCTTC
315065 TGTGACCGAT
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.23, C:0.34, G:0.07, T:0.36
Consensus pattern (18 bp):
ATCATCATCTTCATCATC
Found at i:315030 original size:42 final size:42
Alignment explanation
Indices: 314971--315061 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
314961 GGATCATCAT
*
314971 CTTCATCATCATCATCATCATCGTCATCATCTTCATCGCCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
* * *
315013 CTTCATCGTCATCATCATCATCATCGTCATCTTCATCGTCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
315055 CTTCATC
1 CTTCATC
315062 TTCTGTGACC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.22, C:0.35, G:0.08, T:0.35
Consensus pattern (42 bp):
CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
Found at i:316871 original size:199 final size:199
Alignment explanation
Indices: 316529--318147 Score: 2976
Period size: 199 Copynumber: 8.1 Consensus size: 199
316519 TTTAAATTAG
* * *
316529 TATCGACACAAAATATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATT
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
316594 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATATTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
316659 CGACACGTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAAA
316724 AAAA
196 AAAA
*
316728 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
316793 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
316858 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTTATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAAA
316923 AAAA
196 AAAA
*
316927 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTTATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
316992 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
317057 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAAA
317122 AAAA
196 AAAA
317126 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
317191 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
317256 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGG-A
131 CGACAC-TTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAA
317320 AAAAA
195 AAAAA
*
317325 TATCGACACAAACTATATTAGTGTCGATACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
317390 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
317455 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAAA
317520 AAAA
196 AAAA
317524 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
*
317589 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
317654 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGGG-A
131 CGACAC-TTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAA
317718 AAAAA
195 AAAAA
317723 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
317788 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
317853 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCTGGAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAAA
317918 AAAA
196 AAAA
317922 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
317987 ATTGTACCGGTTAGATT-AAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
318051 CGACACTTTTTATATATGGATCGACACTTTATTGATGCACCTTGTTTTTAATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAAA
318115 AAAA
196 AAAA
*
318119 TATCGACACAAACTATATTAGTATCGACA
1 TATCGACACAAACTATATTAGTGTCGACA
318148 TGACCCTTAA
Statistics
Matches: 1384, Mismatches: 32, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
197 36 0.03
198 212 0.15
199 1030 0.74
200 106 0.08
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACTTATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGATGCACCTTGTTTTTAATTCATTCTGGGAAA
AAAA
Found at i:318256 original size:19 final size:19
Alignment explanation
Indices: 318229--318273 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
318219 ATTCACATAA
*
318229 AAAAATATAAATCGTATAC
1 AAAATTATAAATCGTATAC
*
318248 AAAATTATAAATCTTATAC
1 AAAATTATAAATCGTATAC
318267 AAAATTA
1 AAAATTA
318274 ACTCGACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAATTATAAATCGTATAC
Found at i:320105 original size:33 final size:33
Alignment explanation
Indices: 320068--320133 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
320058 CATCTTAATA
*
320068 TCACCCCTTAACACCGAAACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
***
320101 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
320134 CCATCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.02, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCGAAACTTCTTTCACCACT
Found at i:322276 original size:24 final size:24
Alignment explanation
Indices: 322239--322291 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
322229 CCGTTCTATC
322239 TATTTTCAGAGGATAT-TTAGCTTA
1 TATTTTCAGAGGATATGTTA-CTTA
** *
322263 TATTTTCATCGGATATGTTATTTA
1 TATTTTCAGAGGATATGTTACTTA
322287 TATTT
1 TATTT
322292 AATCGATACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.13, T:0.53
Consensus pattern (24 bp):
TATTTTCAGAGGATATGTTACTTA
Found at i:322482 original size:20 final size:19
Alignment explanation
Indices: 322436--322482 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
322426 TCCGGTATCA
*
322436 TTTTACCGTTTTTATCATT
1 TTTTACCGATTTTATCATT
*
322455 TTGATACCGATTTTATCATAT
1 TT-TTACCGATTTTATCAT-T
322476 TTTTACC
1 TTTTACC
322483 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.21, C:0.17, G:0.06, T:0.55
Consensus pattern (19 bp):
TTTTACCGATTTTATCATT
Found at i:322630 original size:20 final size:20
Alignment explanation
Indices: 322603--322649 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
322593 ACACTTTTAA
322603 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
322622 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
322643 TTTTACC
1 TTTTACC
322650 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:330056 original size:2 final size:2
Alignment explanation
Indices: 330045--330100 Score: 64
Period size: 2 Copynumber: 28.5 Consensus size: 2
330035 ATAATTTGGC
330045 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GT- TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
*
330085 TA TT TGA TA TA TA TA T
1 TA TA T-A TA TA TA TA T
330101 CGGTGGAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
1 3 0.06
2 42 0.89
3 2 0.04
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.52
Consensus pattern (2 bp):
TA
Found at i:330222 original size:23 final size:23
Alignment explanation
Indices: 330178--330222 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
330168 TTAAAACAAT
*
330178 AACGTAACATGTGACATCATTTA
1 AACGTAACATGTGAAATCATTTA
* * *
330201 AACGTCACTTGTGAAATTATTT
1 AACGTAACATGTGAAATCATTT
330223 TTATATTATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.36
Consensus pattern (23 bp):
AACGTAACATGTGAAATCATTTA
Found at i:340674 original size:2 final size:2
Alignment explanation
Indices: 340667--340719 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
340657 TCTGATCTTT
340667 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
340709 TC TC TC TC TC T
1 TC TC TC TC TC T
340720 ATGTGTGTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:342068 original size:3 final size:3
Alignment explanation
Indices: 342060--342089 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
342050 TAGAATTACC
342060 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
342090 GGAAGAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:343194 original size:30 final size:30
Alignment explanation
Indices: 343160--343239 Score: 126
Period size: 30 Copynumber: 2.7 Consensus size: 30
343150 CAAAATGATT
*
343160 TTTGGACTTGAATTGAATTTACAAAACGTA
1 TTTGGACTTGAATTGAATTTACAAAACATA
* *
343190 TTTGGACTTGAATTAAATTTACAAAATATA
1 TTTGGACTTGAATTGAATTTACAAAACATA
343220 TTTGGACTT-AATTGAATTTA
1 TTTGGACTTGAATTGAATTTA
343240 TTCAAAATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
29 10 0.22
30 36 0.78
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (30 bp):
TTTGGACTTGAATTGAATTTACAAAACATA
Found at i:343331 original size:19 final size:19
Alignment explanation
Indices: 343304--343369 Score: 96
Period size: 19 Copynumber: 3.5 Consensus size: 19
343294 AATGTTTTTA
* *
343304 TGAATAGTAATTTACTATT
1 TGAACAGTAAATTACTATT
343323 TGAACAGTAAATTACTATT
1 TGAACAGTAAATTACTATT
* *
343342 TGAACAGTAAATCACTGTT
1 TGAACAGTAAATTACTATT
343361 TGAACAGTA
1 TGAACAGTA
343370 CCCCTGAGGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
TGAACAGTAAATTACTATT
Found at i:343504 original size:21 final size:21
Alignment explanation
Indices: 343478--343519 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
343468 ATTTGAATAT
343478 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTATCGATTCCC
343499 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTATCGATTCCC
343520 CTCATTCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (21 bp):
TATGAAGGGGTATCGATTCCC
Found at i:343581 original size:21 final size:21
Alignment explanation
Indices: 343548--343587 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
343538 TTTTTGCAGA
*
343548 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
343570 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
343588 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:348354 original size:42 final size:42
Alignment explanation
Indices: 348307--348395 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
348297 GCAATTTTCG
348307 ATGGACGAGATAAGCTTCCAACAGCCATTCCCGCAATTGCCC
1 ATGGACGAGATAAGCTTCCAACAGCCATTCCCGCAATTGCCC
348349 ATGGACGAGATAAGCTTCCAACAGCCATTCCCGCAATTGCCC
1 ATGGACGAGATAAGCTTCCAACAGCCATTCCCGCAATTGCCC
348391 ATGGA
1 ATGGA
348396 AGAGGCCACC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.19
Consensus pattern (42 bp):
ATGGACGAGATAAGCTTCCAACAGCCATTCCCGCAATTGCCC
Found at i:367643 original size:15 final size:15
Alignment explanation
Indices: 367623--367652 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
367613 AGTTTGATAC
367623 TTTTTTTATTTGTTT
1 TTTTTTTATTTGTTT
*
367638 TTTTTTTCTTTGTTT
1 TTTTTTTATTTGTTT
367653 ATGATGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.03, G:0.07, T:0.87
Consensus pattern (15 bp):
TTTTTTTATTTGTTT
Found at i:379186 original size:20 final size:22
Alignment explanation
Indices: 379134--379187 Score: 58
Period size: 24 Copynumber: 2.5 Consensus size: 22
379124 TCACTAAAGA
379134 TAATGGTAAATAAATAATGGGCT
1 TAATGGTAAATAAATAAT-GGCT
* *
379157 TTATCAGTAAATAAA-AAT-GCT
1 TAAT-GGTAAATAAATAATGGCT
379178 TAATGGTAAA
1 TAATGGTAAA
379188 ATTGGTCCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 5 0.19
21 6 0.23
23 6 0.23
24 9 0.35
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (22 bp):
TAATGGTAAATAAATAATGGCT
Found at i:379275 original size:76 final size:76
Alignment explanation
Indices: 379181--379330 Score: 282
Period size: 76 Copynumber: 2.0 Consensus size: 76
379171 AAATGCTTAA
379181 TGGTAAAATTGGTCCCTACGCTAACATTCAATCATTCTTTCTCTTAAATTTCACAAAAGCAAATG
1 TGGTAAAATTGGTCCCTACGCTAACATTCAATCATTCTTTCTCTTAAATTTCACAAAAGCAAATG
379246 ATATAAAAAAT
66 ATATAAAAAAT
* *
379257 TGGTAAAATTGGTCCCTACGCTAACATTCAATCATTCTTTCTCTTAAATTTCACAAATGCAATTG
1 TGGTAAAATTGGTCCCTACGCTAACATTCAATCATTCTTTCTCTTAAATTTCACAAAAGCAAATG
379322 ATATAAAAA
66 ATATAAAAA
379331 GAAGTCCATA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (76 bp):
TGGTAAAATTGGTCCCTACGCTAACATTCAATCATTCTTTCTCTTAAATTTCACAAAAGCAAATG
ATATAAAAAAT
Found at i:380335 original size:17 final size:17
Alignment explanation
Indices: 380315--380360 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
380305 AAACTTATAA
380315 AACCCACTTAATAATTT
1 AACCCACTTAATAATTT
380332 AACCCACTTAATAATTT
1 AACCCACTTAATAATTT
*
380349 AACCTACTTAAT
1 AACCCACTTAAT
380361 TTATTTTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (17 bp):
AACCCACTTAATAATTT
Found at i:381032 original size:2 final size:2
Alignment explanation
Indices: 380974--381019 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
380964 TTTTTGAGGG
380974 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
381015 AT AT A
1 AT AT A
381020 ATTTTTTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:384843 original size:17 final size:18
Alignment explanation
Indices: 384821--384854 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
384811 TCAGCCGGTC
384821 CGGTTC-GAACGGTTCAG
1 CGGTTCTGAACGGTTCAG
*
384838 CGGTTCTGACCGGTTCA
1 CGGTTCTGAACGGTTCA
384855 CTAGTAACGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.26
Consensus pattern (18 bp):
CGGTTCTGAACGGTTCAG
Found at i:386662 original size:16 final size:17
Alignment explanation
Indices: 386630--386670 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
386620 ATTTTTTTAC
386630 AAAATTAAAAATAAAAA
1 AAAATTAAAAATAAAAA
*
386647 AAAATTAAATAT-AAAA
1 AAAATTAAAAATAAAAA
386663 AAAATTAA
1 AAAATTAA
386671 TGAAAGGGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAATTAAAAATAAAAA
Found at i:396406 original size:42 final size:42
Alignment explanation
Indices: 396321--396406 Score: 122
Period size: 42 Copynumber: 2.0 Consensus size: 42
396311 TTGTTTCCGA
* *
396321 AAAATAGTTTTCCGTGTTTGTTTCACGTAATTCGTTTTTTGG
1 AAAATAGTTTTCCCTGTTTGTTTCACGTAATTCGTTTTCTGG
396363 AAAATA-TTTTCTCCTGTTTGTTTCACGTAATT-GATTTTCTGG
1 AAAATAGTTTTC-CCTGTTTGTTTCACGTAATTCG-TTTTCTGG
396405 AA
1 AA
396407 TGTAATTCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
41 6 0.15
42 34 0.85
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49
Consensus pattern (42 bp):
AAAATAGTTTTCCCTGTTTGTTTCACGTAATTCGTTTTCTGG
Found at i:398747 original size:2 final size:2
Alignment explanation
Indices: 398740--398781 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
398730 GGTCGGCAAG
* *
398740 GA GA GA GA GA GA GA GA GA GA GA GA GG GA GG GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
398782 ATCCAATACC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (2 bp):
GA
Found at i:411828 original size:2 final size:2
Alignment explanation
Indices: 411821--411860 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
411811 AGAAGGGAAT
411821 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
411861 AGGAGAGTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:421484 original size:25 final size:25
Alignment explanation
Indices: 421447--421494 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
421437 TGTCAATTAA
*
421447 TTAAAAAAATTAATAAATATTTACC
1 TTAAAAAAATTAAAAAATATTTACC
* *
421472 TTAAATAATTTAAAAAATATTTA
1 TTAAAAAAATTAAAAAATATTTA
421495 TATAATATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (25 bp):
TTAAAAAAATTAAAAAATATTTACC
Found at i:430201 original size:54 final size:53
Alignment explanation
Indices: 430056--430206 Score: 212
Period size: 54 Copynumber: 2.8 Consensus size: 53
430046 ACTCTCATGT
*
430056 ACTTGAAAATCATGTCTGTCTTGTAATAACATCGGATACCTGTCACGCTCTTG
1 ACTTGAAAATCATGTCTGTCTTGTAATAACATAGGATACCTGTCACGCTCTTG
* *
430109 AGCTTGAAAATCATGTCTGTCCTGTAATAACATAGGATACCTGTCATGCTCTTG
1 A-CTTGAAAATCATGTCTGTCTTGTAATAACATAGGATACCTGTCACGCTCTTG
* * * * *
430163 CACTTGAAAATCATGTCTATCTTGCAATATCGTGGGATACCTGT
1 -ACTTGAAAATCATGTCTGTCTTGTAATAACATAGGATACCTGT
430207 AAGAAAAGGT
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 85 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (53 bp):
ACTTGAAAATCATGTCTGTCTTGTAATAACATAGGATACCTGTCACGCTCTTG
Done.