genome.fa.s7708.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007708.1 Hibiscus syriacus cultivar Beakdansim tig00109923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  882274

Tables:   1   2   3   

This is table  3  of  3  ( 284 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795947--796109	38	4.4	38	72	16	105	23	6	2	68	1.25
795975--796013	20	1.9	20	89	5	60	25	5	2	66	1.25
795975--796091	17	6.3	18	70	18	64	23	7	2	66	1.30
795973--796053	18	4.4	19	75	20	57	27	7	1	64	1.28
800514--800639	66	1.9	66	95	0	225	34	16	16	31	1.92
802029--802058	2	15.0	2	92	0	51	53	0	0	46	1.00
810190--810229	16	2.5	16	100	0	80	62	7	0	30	1.23
819936--819973	7	5.4	7	96	0	67	26	26	28	18	1.98
819970--820049	5	14.8	5	75	14	70	7	22	50	20	1.73
819963--820049	22	4.0	22	96	0	165	9	22	48	19	1.77
820046--820144	9	10.3	9	77	10	81	29	27	27	16	1.97
820071--820145	29	2.5	31	89	8	120	29	26	26	17	1.97
820046--820144	19	5.2	19	76	17	80	29	27	27	16	1.97
827309--827349	5	7.8	5	84	10	55	4	21	53	19	1.63
827352--827415	19	3.3	19	83	12	69	28	29	26	15	1.96
827378--827436	20	2.9	21	83	14	79	30	23	27	18	1.98
828726--828777	22	2.4	22	93	0	86	44	7	17	30	1.77
828821--828879	21	2.8	21	94	0	100	28	28	15	27	1.96
832622--832656	17	2.1	17	89	10	54	54	14	2	28	1.54
833787--833993	53	3.9	53	86	5	285	22	27	18	31	1.97
834388--834602	42	4.9	42	70	13	155	29	21	19	29	1.97
834447--834471	13	1.9	13	100	0	50	24	20	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
834804--834902	42	2.4	42	84	0	135	34	23	17	25	1.96
834807--834881	22	3.5	21	67	15	55	33	22	17	26	1.96
843678--843730	17	3.2	17	82	10	65	58	15	0	26	1.37
845494--845564	31	2.3	31	90	0	115	30	12	26	29	1.93
846086--846113	13	2.2	13	100	0	56	42	7	0	50	1.30
855986--856137	81	1.9	81	97	0	286	44	21	7	26	1.80
856774--856808	2	17.5	2	100	0	70	51	0	48	0	1.00
873606--873698	21	4.6	20	75	4	87	38	17	24	19	1.92
873603--873698	41	2.3	41	96	0	174	39	16	23	19	1.92
873606--873698	20	4.6	20	75	4	87	38	17	24	19	1.92
873687--873779	20	4.7	20	78	5	89	34	24	18	22	1.96
873684--873760	41	1.9	40	86	2	109	40	22	16	20	1.91
873729--873775	19	2.4	20	89	3	69	27	29	19	23	1.98
874336--874380	19	2.4	19	92	0	72	48	26	15	8	1.74
874376--874525	20	8.1	19	79	13	152	13	22	20	44	1.85
874437--874501	34	1.9	34	90	3	105	10	23	23	43	1.85
874376--874525	37	4.1	37	77	15	157	13	22	20	44	1.85
876569--876635	21	3.2	21	66	6	55	23	35	20	19	1.95
877977--878013	14	2.6	14	91	0	65	29	0	24	45	1.53
878157--878274	19	6.7	19	66	19	76	13	23	20	42	1.88
878161--878254	33	2.8	33	98	0	179	12	24	19	43	1.85
881917--881953	14	2.6	14	86	0	56	48	21	0	29	1.50

Tables:   1   2   3

The End!