Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000771.1 Hibiscus syriacus cultivar Beakdansim tig00001496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52959

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61--299
46
5.4
45
72
12
219
25
27
21
26
1.99
18--301
88
3.2
89
93
3
463
25
28
21
25
1.99
631--680
3
17.0
3
83
4
57
26
2
2
70
1.09
1132--1169
19
2.0
19
85
10
51
81
5
13
0
0.85
9477--9542
29
2.2
29
86
7
89
28
9
18
43
1.80
9490--9553
29
2.2
29
91
5
103
29
7
17
45
1.76
11284--11317
15
2.1
17
89
10
54
52
17
0
29
1.45
11899--11959
29
2.1
30
81
9
72
49
8
8
34
1.62
15018--15063
12
3.6
12
81
16
56
45
17
19
17
1.85
15024--15064
12
3.1
13
80
19
57
46
14
17
21
1.84
17390--17484
33
2.9
33
93
1
156
32
7
15
44
1.75
17470--17524
13
4.2
13
75
13
58
34
3
12
49
1.59
17720--17776
21
2.7
21
91
0
96
19
26
26
28
1.99
17940--17993
15
3.4
15
76
14
63
33
7
11
48
1.67
20382--20421
21
1.9
21
94
0
71
30
15
7
47
1.72
20416--20514
33
3.0
33
94
1
164
32
7
15
45
1.73
20500--20554
13
4.2
13
75
13
58
34
3
12
49
1.59
20750--20806
21
2.7
21
83
0
78
15
28
26
29
1.96
20991--21024
18
1.9
18
88
5
52
41
11
8
38
1.73
21118--21149
16
2.0
17
88
11
50
43
21
21
12
1.86
24575--24670
44
2.2
44
94
0
165
58
12
15
13
1.64
50402--50454
23
2.5
20
75
16
61
41
18
5
33
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50559--50864
87
3.5
87
90
0
468
44
11
12
32
1.77
50799--50858
23
2.6
23
81
0
66
41
8
16
33
1.78
51137--51176
20
2.0
21
85
14
57
45
0
5
50
1.23
51162--51206
14
3.1
14
81
15
56
40
0
2
57
1.11
51876--51944
24
2.9
24
79
18
81
55
0
1
43
1.08
51938--51980
14
3.1
14
83
6
52
37
0
4
58
1.19
51988--52056
30
2.3
31
82
9
81
49
0
1
49
1.09
52157--52825
199
3.4
199
85
4
877
39
13
15
32
1.85

Tables:   1

The End!