Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000772.1 Hibiscus syriacus cultivar Beakdansim tig00001497_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82246
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31
Found at i:56 original size:28 final size:28
Alignment explanation
Indices: 2--223 Score: 142
Period size: 28 Copynumber: 8.1 Consensus size: 28
1 A
* * *
2 ATAAGAATTAAAT-TATAATAATTTTAAG
1 ATAAGAATAAAATATTTAATAA-GTTAAG
*
30 GTAAGAATAGAAATATTTAATAA-TTAAG
1 ATAAGAATA-AAATATTTAATAAGTTAAG
* ** *
58 TTAAGAATAATTTATGTAATAAGTTAAG
1 ATAAGAATAAAATATTTAATAAGTTAAG
*
86 ATAAGAAT-AAATATTT-TTAAGTTAAG
1 ATAAGAATAAAATATTTAATAAGTTAAG
* * * *
112 ATAAAGACTAAAATATATT-TTAATTTAAA
1 AT-AAGAATAAAATAT-TTAATAAGTTAAG
141 ATAAGAATAAAATATATT--T-AGATTAAG
1 ATAAGAATAAAATAT-TTAATAAG-TTAAG
* * *
168 ACAAAAATAAAATATTTAATAAG-T-AT
1 ATAAGAATAAAATATTTAATAAGTTAAG
* *
194 ATAAAAATAAAATATTT-TTAATGTTAAG
1 ATAAGAATAAAATATTTAATAA-GTTAAG
222 AT
1 AT
224 GTAAAATTAA
Statistics
Matches: 157, Mismatches: 24, Indels: 26
0.76 0.12 0.13
Matches are distributed among these distances:
25 3 0.02
26 32 0.20
27 40 0.25
28 57 0.36
29 18 0.11
30 7 0.04
ACGTcount: A:0.54, C:0.01, G:0.09, T:0.36
Consensus pattern (28 bp):
ATAAGAATAAAATATTTAATAAGTTAAG
Found at i:64 original size:23 final size:24
Alignment explanation
Indices: 38--86 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
28 AGGTAAGAAT
38 AGAAAT-ATTTA-ATAATTAAGTTA
1 AGAAATAATTTATATAA-TAAGTTA
*
61 AG-AATAATTTATGTAATAAGTTA
1 AGAAATAATTTATATAATAAGTTA
84 AGA
1 AGA
87 TAAGAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
22 3 0.14
23 16 0.73
24 3 0.14
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (24 bp):
AGAAATAATTTATATAATAAGTTA
Found at i:113 original size:26 final size:27
Alignment explanation
Indices: 25--223 Score: 147
Period size: 28 Copynumber: 7.3 Consensus size: 27
15 TATAATAATT
* *
25 TTAAGGTAAGAATAGAAATATTTAATAA-
1 TTAAGATAAGAATA-AAATATTT-TTAAG
* ** **
53 TTAAGTTAAGAATAATTTATGTAATAAG
1 TTAAGATAAGAATAAAATAT-TTTTAAG
81 TTAAGATAAGAAT-AAATATTTTTAAG
1 TTAAGATAAGAATAAAATATTTTTAAG
* *
107 TTAAGATAAAGACTAAAATATATTTTAAT
1 TTAAGAT-AAGAATAAAATAT-TTTTAAG
* *
136 TTAAAATAAGAATAAAATATATTT-AG
1 TTAAGATAAGAATAAAATATTTTTAAG
* * *
162 ATTAAGACAAAAATAAAATATTTAATAAG
1 -TTAAGATAAGAATAAAATATTT-TTAAG
* *
191 -T-ATATAAAAATAAAATATTTTTAATG
1 TTAAGATAAGAATAAAATATTTTTAA-G
217 TTAAGAT
1 TTAAGAT
224 GTAAAATTAA
Statistics
Matches: 136, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
25 3 0.02
26 31 0.23
27 40 0.29
28 48 0.35
29 14 0.10
ACGTcount: A:0.53, C:0.01, G:0.10, T:0.36
Consensus pattern (27 bp):
TTAAGATAAGAATAAAATATTTTTAAG
Found at i:243 original size:18 final size:18
Alignment explanation
Indices: 211--266 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
201 TAAAATATTT
211 TTAATGTTAAGATGTAAAA
1 TTAAT-TTAAGATGTAAAA
* * *
230 TTAATTTAATATGTGAAC
1 TTAATTTAAGATGTAAAA
* *
248 TTAAATTAAGATATAAAA
1 TTAATTTAAGATGTAAAA
266 T
1 T
267 ATAAGAATTT
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (18 bp):
TTAATTTAAGATGTAAAA
Found at i:3218 original size:14 final size:14
Alignment explanation
Indices: 3199--3228 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
3189 GCACCTTAGA
3199 ATCCAAAATTCTTT
1 ATCCAAAATTCTTT
3213 ATCCAAAATTCTTT
1 ATCCAAAATTCTTT
3227 AT
1 AT
3229 GTTAGTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (14 bp):
ATCCAAAATTCTTT
Found at i:5404 original size:14 final size:15
Alignment explanation
Indices: 5385--5422 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
5375 TTTACATTAT
5385 TTTTATTATAAT-AA
1 TTTTATTATAATAAA
*
5399 TTTTATTATTATAAA
1 TTTTATTATAATAAA
*
5414 TATTATTAT
1 TTTTATTAT
5423 TATTAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTATTATAATAAA
Found at i:5407 original size:3 final size:3
Alignment explanation
Indices: 5380--5457 Score: 70
Period size: 3 Copynumber: 26.3 Consensus size: 3
5370 TAATTTTTAC
* * * * *
5380 ATT ATT TTT ATT ATA ATA ATT -TT ATT ATT ATA AAT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
5427 AAT ATT ACTT -TT ATT TTT ATT ATT ATT ATT A
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT A
5458 ATAAATAATT
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
2 4 0.07
3 54 0.90
4 2 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:5419 original size:15 final size:15
Alignment explanation
Indices: 5387--5460 Score: 80
Period size: 15 Copynumber: 5.0 Consensus size: 15
5377 TACATTATTT
* *
5387 TTATTA-TAATAATT
1 TTATTATTATTAATA
*
5401 TTATTATTATAAATA
1 TTATTATTATTAATA
5416 TTATTATTATTAATA
1 TTATTATTATTAATA
**
5431 TTACTT-TTATTTTTA
1 TTA-TTATTATTAATA
5446 TTATTATTATTAATA
1 TTATTATTATTAATA
5461 AATAATTTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
14 8 0.16
15 39 0.80
16 2 0.04
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (15 bp):
TTATTATTATTAATA
Found at i:7030 original size:2 final size:2
Alignment explanation
Indices: 7018--7054 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7008 ATATCCTGTT
*
7018 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7055 TTACTTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:9201 original size:42 final size:43
Alignment explanation
Indices: 9126--9207 Score: 132
Period size: 42 Copynumber: 1.9 Consensus size: 43
9116 TGGCTTTAGA
9126 GAAGTTAGGAGTAAAGGTTATACCCTATATGTAAAGTTTTGTT
1 GAAGTTAGGAGTAAAGGTTATACCCTATATGTAAAGTTTTGTT
*
9169 GAAGTTAGGAGTGAAA-TTTAT-CCCTATATGTAAAGTTTT
1 GAAGTTAGGAGT-AAAGGTTATACCCTATATGTAAAGTTTT
9208 ATTTGATGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 18 0.49
43 16 0.43
44 3 0.08
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (43 bp):
GAAGTTAGGAGTAAAGGTTATACCCTATATGTAAAGTTTTGTT
Found at i:9325 original size:21 final size:21
Alignment explanation
Indices: 9286--9325 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9276 TTTTCATACA
* * *
9286 TGCATTTTCATTTTGCATCTT
1 TGCATCTTCATTATACATCTT
9307 TGCATCTTCATTATACATC
1 TGCATCTTCATTATACATC
9326 CACATTTTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.23, G:0.07, T:0.50
Consensus pattern (21 bp):
TGCATCTTCATTATACATCTT
Found at i:12231 original size:7 final size:7
Alignment explanation
Indices: 12219--12257 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
12209 CACCAGGGGA
12219 AAAAAAG
1 AAAAAAG
12226 AAAAAAG
1 AAAAAAG
12233 -AAAAAG
1 AAAAAAG
12239 --AAAAG
1 AAAAAAG
12244 -AAAAAG
1 AAAAAAG
12250 AAAAAAG
1 AAAAAAG
12257 A
1 A
12258 TGAGAAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 5 0.17
6 11 0.37
7 14 0.47
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:12236 original size:6 final size:6
Alignment explanation
Indices: 12220--12254 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
12210 ACCAGGGGAA
12220 AAAAAG AAAAAAG AAAAAG -AAAAG AAAAAG AAAAA
1 AAAAAG -AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
12255 AGATGAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:12244 original size:11 final size:11
Alignment explanation
Indices: 12228--12253 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
12218 AAAAAAAGAA
12228 AAAAGAAAAAG
1 AAAAGAAAAAG
12239 AAAAGAAAAAG
1 AAAAGAAAAAG
12250 AAAA
1 AAAA
12254 AAGATGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:12257 original size:18 final size:18
Alignment explanation
Indices: 12221--12254 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
12211 CCAGGGGAAA
12221 AAAAGAAAAAAGAAAAAG
1 AAAAGAAAAAAGAAAAAG
12239 AAAAG-AAAAAGAAAAA
1 AAAAGAAAAAAGAAAAA
12255 AGATGAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAAAGAAAAAG
Found at i:13841 original size:75 final size:75
Alignment explanation
Indices: 13762--14013 Score: 398
Period size: 75 Copynumber: 3.4 Consensus size: 75
13752 CAATATGAAA
* * *
13762 AAATGTTGGGGCATGCTAAAAGCCCATTTCAATCAGAATCAGGAATGTTGATGTATTTTGAACGT
1 AAATGTTGGGGCATGCTGAAAGCCCATTTTAATCAGAATCAGGAATGTTGATGTGTTTTGAACGT
*
13827 TTGTATCAGT
66 TTGTATCAAT
* **
13837 AAATGTTGGGGCATGATGAAAGCCCATTTTAATCAGAAAT-AGGAATGTTGGCGTGTTTTGAACG
1 AAATGTTGGGGCATGCTGAAAGCCCATTTTAATCAG-AATCAGGAATGTTGATGTGTTTTGAACG
13901 TTTGTATCAAT
65 TTTGTATCAAT
* *
13912 AAATGTTGGGGCATGCTGAAAGCCCATTTTAATCAGAATCATGAATGTTGATGTGTTTTGAACAT
1 AAATGTTGGGGCATGCTGAAAGCCCATTTTAATCAGAATCAGGAATGTTGATGTGTTTTGAACGT
13977 TTGTATCAAT
66 TTGTATCAAT
*
13987 AAATGTTGGGGCATGCTGAAGGCCCAT
1 AAATGTTGGGGCATGCTGAAAGCCCAT
14014 ATCATCTTAT
Statistics
Matches: 162, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
74 3 0.02
75 156 0.96
76 3 0.02
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (75 bp):
AAATGTTGGGGCATGCTGAAAGCCCATTTTAATCAGAATCAGGAATGTTGATGTGTTTTGAACGT
TTGTATCAAT
Found at i:14969 original size:54 final size:54
Alignment explanation
Indices: 14884--15045 Score: 279
Period size: 54 Copynumber: 3.0 Consensus size: 54
14874 TGATTGAGAA
* * *
14884 ATCTGGGCATAAGCCATAGGAAATGATGAATGTGTTGTCAAATGTTTTACGAAT
1 ATCTGGGCAGAAGCCACAGGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
* *
14938 ATTTGGGCAGAAGCCACAAGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
1 ATCTGGGCAGAAGCCACAGGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
14992 ATCTGGGCAGAAGCCACAGGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
1 ATCTGGGCAGAAGCCACAGGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
15046 CAGTGATTAT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (54 bp):
ATCTGGGCAGAAGCCACAGGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
Found at i:15491 original size:22 final size:22
Alignment explanation
Indices: 15416--15492 Score: 111
Period size: 22 Copynumber: 3.5 Consensus size: 22
15406 AACTACATTA
* *
15416 TTCAAAGATAATAGATT-TATT
1 TTCAAAGATGATAGATTCTCTT
*
15437 CTTCAAAGATGATAGATTCTCTC
1 -TTCAAAGATGATAGATTCTCTT
15460 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
15482 TTCAAAGATGA
1 TTCAAAGATGA
15493 AAGCTTTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
22 48 0.96
23 2 0.04
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:16194 original size:45 final size:45
Alignment explanation
Indices: 16128--16516 Score: 419
Period size: 45 Copynumber: 8.6 Consensus size: 45
16118 CCCACATCTG
*
16128 TAAGACCTTCAGTGCATGATGTTTTCAAAGCCTTCAGGTCATCCA
1 TAAGACCTTCAGTGCAGGATGTTTTCAAAGCCTTCAGGTCATCCA
* * *
16173 TAAGACATACAGTGCAGGATGTTTTCAAAGCC-TCAGGGTCATCTA
1 TAAGACCTTCAGTGCAGGATGTTTTCAAAGCCTTCA-GGTCATCCA
* **
16218 TAAGACCTACAGTGCAGGATGTTTTCAAAGCCTTCAGGTCATCTG
1 TAAGACCTTCAGTGCAGGATGTTTTCAAAGCCTTCAGGTCATCCA
* * *
16263 TAAGACCTTCAGTGTAGAATGTTTTCAAAACCTTC-GAGTCATCCA
1 TAAGACCTTCAGTGCAGGATGTTTTCAAAGCCTTCAG-GTCATCCA
* * ** **
16308 TAAGACCTAT-AATGCAAGATGTTTTCAAAGCCTTTGGGTCATCTG
1 TAAGACCT-TCAGTGCAGGATGTTTTCAAAGCCTTCAGGTCATCCA
* * **
16353 TAAGACCTTCAATGCATGATGTTTTCAAAAGCCTTC-GGCTCATCTG
1 TAAGACCTTCAGTGCAGGATGTTTTC-AAAGCCTTCAGG-TCATCCA
* * *
16399 TAAGACCTTCAGTGCATGATGATTTCAAAGCCTTCGGGTCATCCA
1 TAAGACCTTCAGTGCAGGATGTTTTCAAAGCCTTCAGGTCATCCA
* * * *
16444 TATGACCTACAGTGTAGGATGTTTTCAAAAAGTCCTTCAGGCCATCCA
1 TAAGACCTTCAGTGCAGGATGTTTTC--AAAG-CCTTCAGGTCATCCA
16492 TAAGACCTTCAGTGCCA-GATGTTTT
1 TAAGACCTTCAGTG-CAGGATGTTTT
16517 GAAATAACAA
Statistics
Matches: 295, Mismatches: 36, Indels: 23
0.83 0.10 0.06
Matches are distributed among these distances:
44 5 0.02
45 206 0.70
46 46 0.16
47 4 0.01
48 33 0.11
49 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (45 bp):
TAAGACCTTCAGTGCAGGATGTTTTCAAAGCCTTCAGGTCATCCA
Found at i:16374 original size:135 final size:136
Alignment explanation
Indices: 16122--16472 Score: 503
Period size: 135 Copynumber: 2.6 Consensus size: 136
16112 CTATTTCCCA
*
16122 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAGCCTTC-AGGTCATCCATAAGACATACAGT
1 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAGCCTTCGA-GTCATCCATAAGACCTACAGT
*
16186 GCAGGATGTTTTCAAAGCCTCAGGGTCATCTATAAGACCTACAGTGCAGGATGTTTTC-AAAGCC
65 GCAGGATGTTTTCAAAGCCTCAGGGTCATCTATAAGACCTACAATGCAGGATGTTTTCAAAAGCC
16250 TTCAGG-T
130 TTC-GGCT
* * * *
16257 CATCTGTAAGACCTTCAGTGTA-GAATGTTTTCAAAACCTTCGAGTCATCCATAAGACCTATAAT
1 CATCTGTAAGACCTTCAGTGCATG-ATGTTTTCAAAGCCTTCGAGTCATCCATAAGACCTACAGT
* ** * * *
16321 GCAAGATGTTTTCAAAGCCTTTGGGTCATCTGTAAGACCTTCAATGCATGATGTTTTCAAAAGCC
65 GCAGGATGTTTTCAAAGCCTCAGGGTCATCTATAAGACCTACAATGCAGGATGTTTTCAAAAGCC
16386 TTCGGCT
130 TTCGGCT
* * *
16393 CATCTGTAAGACCTTCAGTGCATGATGATTTCAAAGCCTTCGGGTCATCCATATGACCTACAGTG
1 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAGCCTTCGAGTCATCCATAAGACCTACAGTG
*
16458 TAGGATGTTTTCAAA
66 CAGGATGTTTTCAAA
16473 AAGTCCTTCA
Statistics
Matches: 190, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
134 1 0.01
135 108 0.57
136 80 0.42
137 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (136 bp):
CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAGCCTTCGAGTCATCCATAAGACCTACAGTG
CAGGATGTTTTCAAAGCCTCAGGGTCATCTATAAGACCTACAATGCAGGATGTTTTCAAAAGCCT
TCGGCT
Found at i:16627 original size:39 final size:39
Alignment explanation
Indices: 16570--17093 Score: 647
Period size: 39 Copynumber: 13.5 Consensus size: 39
16560 TTTCCAGAAG
* *
16570 GAGTTCATAATCTAAAGAACTCGTCTAAAGAGGAAAAAA
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
16609 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
16648 GAGTTCATAATCTGAAGAACTCGTCTGAAGA-GAAAAAA
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
* * * * *
16686 GGATTTCATAATTTGAAAAACTCGTCTGAAGATGAAAAAT
1 -GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
*
16726 GAGTTCATAATCTGAAGAACTCGACTGAAGAGG-AAAAA
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
* * *
16764 GAAGTTCATAATCTGAAGAACTCGTCTGGAGAGGAAGAAT
1 G-AGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
* *
16804 TAGTTCATAATCTGAAGAACTCGTATGAAGAGG-AAAAA
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
* * * *
16842 GAAGTTCATAATCTAAAGAA-T-GTTTGAAGAGGAAGAAG
1 G-AGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
* *
16880 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAGAAT
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
* *
16919 GAGTTCATAATCTGAAGAACTCGTCCGAAGA-GAAAGAAG
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAA-AAA
* * *
16958 GAGTTAATAATTTGAAGAACTCGTCTGAAGA-GAAAGAAG
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAA-AAA
*
16997 GAGTTCATAATCTGAAGAACTCATCTGAAGA-GAAAAAA
1 GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
* * *
17035 GGAGTTCATAGTCTGAAGAACTCGTCT-AA-TGG-AAGAA
1 -GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
*
17072 GAAGTTCATAGTCTGAAGAACT
1 G-AGTTCATAATCTGAAGAACT
17094 TATTCAACCT
Statistics
Matches: 430, Mismatches: 43, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.00
37 51 0.12
38 29 0.07
39 340 0.79
40 9 0.02
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.23
Consensus pattern (39 bp):
GAGTTCATAATCTGAAGAACTCGTCTGAAGAGGAAAAAA
Found at i:17275 original size:3 final size:3
Alignment explanation
Indices: 17259--17328 Score: 92
Period size: 3 Copynumber: 24.3 Consensus size: 3
17249 TAATTTTTCC
* * *
17259 ATT ATT -TT -TT ATT ATT ATA ATA ATT ATT ATT ATT ATA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
17305 ATT ATT ATT A-T ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
17329 ATAATAAATG
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 6 0.10
3 55 0.90
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:18837 original size:23 final size:23
Alignment explanation
Indices: 18811--18859 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
18801 ATAAAGAACC
*
18811 AAAATAAACTT-AAATATACCATTA
1 AAAATAAA-TTCAAACA-ACCATTA
18835 AAAATAAATTCAAACAACCATTA
1 AAAATAAATTCAAACAACCATTA
18858 AA
1 AA
18860 TCAACCACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.24
Consensus pattern (23 bp):
AAAATAAATTCAAACAACCATTA
Found at i:29085 original size:24 final size:24
Alignment explanation
Indices: 29041--29090 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
29031 ATAAAGAACC
*
29041 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
29065 AAAATAAAGTTCAAACA-ACCATTA
1 AAAATAAACTT-AAACATACCATTA
29089 AA
1 AA
29091 TCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:30303 original size:34 final size:34
Alignment explanation
Indices: 30235--30306 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
30225 TTGGAGTTAT
* *
30235 TTTAATTTGGTCACTAAATTATATTTCTGAATAA
1 TTTAATTTGGTCACCAAATTATATTTATGAATAA
* * **
30269 TTTAATTTGGTCTCCAAATTTTATTTATTTATAA
1 TTTAATTTGGTCACCAAATTATATTTATGAATAA
30303 TTTA
1 TTTA
30307 GTCATTAATC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.53
Consensus pattern (34 bp):
TTTAATTTGGTCACCAAATTATATTTATGAATAA
Found at i:33945 original size:14 final size:15
Alignment explanation
Indices: 33926--33954 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33916 ACTGAAGATA
33926 CTATTTTTT-TTTAT
1 CTATTTTTTATTTAT
33940 CTATTTTTTATTTAT
1 CTATTTTTTATTTAT
33955 ATTATTATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (15 bp):
CTATTTTTTATTTAT
Found at i:33962 original size:3 final size:3
Alignment explanation
Indices: 33954--34030 Score: 81
Period size: 3 Copynumber: 26.7 Consensus size: 3
33944 TTTTTATTTA
* *
33954 TAT TAT TAT TGT TAT TAT T-T TATT TAT TAC TAT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* *
33998 AAT TA- TAT TAT TAT TAT TAA TAT TAT T-T TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
34031 CACTTCAGTC
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
2 8 0.13
3 50 0.82
4 3 0.05
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:33994 original size:49 final size:49
Alignment explanation
Indices: 33936--34031 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
33926 CTATTTTTTT
* * * * *
33936 TTATCTATTTTTTATTTATATTATTATTGTTATTATTTTATTTATTACTA
1 TTATCTATTTTATAATTATATTATTATTATTAATATTAT-TTTATTACTA
33986 TTAT-TATTTTATAATTATATTATTATTATTAATATTATTTTATTAC
1 TTATCTATTTTATAATTATATTATTATTATTAATATTATTTTATTAC
34032 ACTTCAGTCC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
48 8 0.20
49 29 0.71
50 4 0.10
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (49 bp):
TTATCTATTTTATAATTATATTATTATTATTAATATTATTTTATTACTA
Found at i:41808 original size:15 final size:12
Alignment explanation
Indices: 41770--41801 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
41760 ACACCGACAA
41770 CCAAATCCACCT
1 CCAAATCCACCT
41782 CCAAATCCACCT
1 CCAAATCCACCT
41794 CCAAATCC
1 CCAAATCC
41802 TCCACCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.50, G:0.00, T:0.16
Consensus pattern (12 bp):
CCAAATCCACCT
Found at i:44812 original size:22 final size:21
Alignment explanation
Indices: 44769--44818 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
44759 AAATTATTAA
*
44769 TCATTTTTATAGTTTTTAATT
1 TCATTTTTATAGTTGTTAATT
* *
44790 TCATTTATTTTAGTTGTTGATT
1 TCATTT-TTATAGTTGTTAATT
*
44812 TAATTTT
1 TCATTTT
44819 ATATCTTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.22, C:0.04, G:0.08, T:0.66
Consensus pattern (21 bp):
TCATTTTTATAGTTGTTAATT
Found at i:45732 original size:20 final size:21
Alignment explanation
Indices: 45698--45747 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
45688 TATATATATT
45698 TATTATTTTCATAAT-ATTTA
1 TATTATTTTCATAATGATTTA
*
45718 TATTATTTT-ATTAATGTTTTA
1 TATTATTTTCA-TAATGATTTA
*
45739 TTTTATTTT
1 TATTATTTT
45748 TCAAGTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 1 0.04
20 13 0.50
21 12 0.46
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (21 bp):
TATTATTTTCATAATGATTTA
Found at i:49076 original size:15 final size:15
Alignment explanation
Indices: 49056--49087 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
49046 GATCAATACC
49056 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
49071 TTTTGCATACATTCA
1 TTTTGCATACATGCA
49086 TT
1 TT
49088 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:56472 original size:14 final size:13
Alignment explanation
Indices: 56435--56474 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
56425 AAAATGAAAT
56435 AGAAAAAAAAAGA
1 AGAAAAAAAAAGA
*
56448 AAAAGAAAAAAAGA
1 AGAA-AAAAAAAGA
56462 AGAAAATAAAAAG
1 AGAAAA-AAAAAG
56475 GAGGGTCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (13 bp):
AGAAAAAAAAAGA
Found at i:56473 original size:17 final size:17
Alignment explanation
Indices: 56422--56473 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
56412 ATGCTTGAAG
*
56422 AAAAAAATG-AAATAGA
1 AAAAAAAAGAAAATAGA
56438 AAAAAAAAGAAAA-AGA
1 AAAAAAAAGAAAATAGA
56454 AAAAAAGAAGAAAATA-A
1 AAAAAA-AAGAAAATAGA
56471 AAA
1 AAA
56474 GGAGGGTCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
16 17 0.53
17 14 0.44
18 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.06
Consensus pattern (17 bp):
AAAAAAAAGAAAATAGA
Found at i:56869 original size:18 final size:19
Alignment explanation
Indices: 56805--56873 Score: 77
Period size: 18 Copynumber: 3.5 Consensus size: 19
56795 ATTTATTAAT
*
56805 AAATTCTAAGTTTATTTTCTCT
1 AAATTC-AA-TTTATTTT-TCG
*
56827 AAATTCAATTTATTTTTTG
1 AAATTCAATTTATTTTTCG
*
56846 AGATTCAATTTA-TTTTCG
1 AAATTCAATTTATTTTTCG
56864 AAATTCAATT
1 AAATTCAATT
56874 CTTTTATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
18 14 0.33
19 12 0.29
20 8 0.19
21 2 0.05
22 6 0.14
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (19 bp):
AAATTCAATTTATTTTTCG
Found at i:58223 original size:113 final size:113
Alignment explanation
Indices: 58020--58464 Score: 729
Period size: 113 Copynumber: 4.0 Consensus size: 113
58010 GCAAAGATTC
* *
58020 GAATCCATCATTCGATGGATCAACATTTCTAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 GAATTCATCATTCGATGGATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGA
58085 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAACCTTTTGTTT
66 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAACCTTTTGTTT
* *
58133 GAATTCATCATTCGATGGATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTAAAGA
1 GAATTCATCATTCGATGGATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
58198 AGGAAGAAGAAATTCATAATGAGAAGAATTTATTCAAACCTTTTGTTT
66 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAACCTTTTGTTT
* *
58246 GAATTCATCATTCGATGGATCAACATTTCCATAGAAGTTCATAATGAGAAGAATTCATCTGAAGA
1 GAATTCATCATTCGATGGATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGA
58311 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAACC---T-TTT
66 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAACCTTTTGTTT
*
58355 GAATTCATCATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 GAATTCATCATTCGATGGATCAACATTTCCAGAG-AAGTTCATAATGAGAAGAACTCATCTGAAG
* * ** *
58420 AATGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTC-GACCTTTTG
65 AAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAACCTTTTG
58465 CATGACTCTA
Statistics
Matches: 309, Mismatches: 18, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
109 38 0.12
110 62 0.20
112 1 0.00
113 208 0.67
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (113 bp):
GAATTCATCATTCGATGGATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGA
AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAAACCTTTTGTTT
Found at i:58335 original size:24 final size:23
Alignment explanation
Indices: 58292--58336 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
58282 GTTCATAATG
*
58292 AGAAGAATTCATCTGAAGAAGGA
1 AGAAGAATTCATATGAAGAAGGA
58315 AGAAGAAATTCATAATG-AGAAG
1 AGAAG-AATTCAT-ATGAAGAAG
58337 AATTTGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 12 0.63
25 2 0.11
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATATGAAGAAGGA
Found at i:58577 original size:20 final size:20
Alignment explanation
Indices: 58514--58578 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 20
58504 TTTCCAGAAG
58514 TGTTCATAATGAGAAGAATT
1 TGTTCATAATGAGAAGAATT
** * *
58534 CATCTGAAAATGAAGAAGAA--
1 TGT-TCATAATG-AGAAGAATT
58554 -GTTCATAATGAGAAGAATT
1 TGTTCATAATGAGAAGAATT
58573 TGTTCA
1 TGTTCA
58579 ACCTTGCCTT
Statistics
Matches: 33, Mismatches: 7, Indels: 10
0.66 0.14 0.20
Matches are distributed among these distances:
17 7 0.21
18 6 0.18
19 1 0.03
20 6 0.18
21 6 0.18
22 7 0.21
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (20 bp):
TGTTCATAATGAGAAGAATT
Found at i:58953 original size:3 final size:3
Alignment explanation
Indices: 58945--59024 Score: 105
Period size: 3 Copynumber: 27.7 Consensus size: 3
58935 TTTTTATTTA
*
58945 TAT TAT TAT TAT TAT TAT TAT T-T TATT TAT TAC TAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
*
58989 TAT AAT TA- TAT TAT TAT TAT TAT TAT TAT T-T TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
59025 CACTTTAGGC
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
2 8 0.12
3 57 0.84
4 3 0.04
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:59739 original size:10 final size:10
Alignment explanation
Indices: 59724--59749 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
59714 CGGTGTCAAC
59724 GGCGGCGTGT
1 GGCGGCGTGT
59734 GGCGGCGTGT
1 GGCGGCGTGT
59744 GGCGGC
1 GGCGGC
59750 CGATCGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.62, T:0.15
Consensus pattern (10 bp):
GGCGGCGTGT
Found at i:61333 original size:3 final size:3
Alignment explanation
Indices: 61325--61366 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
61315 ATAACAGACG
*
61325 AAT AAT AAT AAT AAT AA- CAT CAAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
61367 TGTAGACACC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 1 0.03
3 32 0.91
4 2 0.06
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:61405 original size:2 final size:2
Alignment explanation
Indices: 61400--61439 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
61390 GCTCAAAAAA
61400 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61440 ATAATTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63021 original size:3 final size:3
Alignment explanation
Indices: 63013--63056 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
63003 CGGTCGCGAC
63013 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63057 ACAACTAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:75032 original size:21 final size:22
Alignment explanation
Indices: 75006--75046 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
74996 TTATGACAGG
75006 GAGTATCGG-AATTCCTTTAAT
1 GAGTATCGGTAATTCCTTTAAT
*
75027 GAGTATCGGTACTTCCTTTA
1 GAGTATCGGTAATTCCTTTA
75047 TAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (22 bp):
GAGTATCGGTAATTCCTTTAAT
Found at i:76592 original size:15 final size:15
Alignment explanation
Indices: 76554--76595 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
76544 TCGGGTATGT
*
76554 ATAAAAATAAATATA
1 ATAAAAATAAAAATA
**
76569 ATATTAATAAAAATA
1 ATAAAAATAAAAATA
76584 ATAAAAATAAAA
1 ATAAAAATAAAA
76596 TGAAAAATAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAAATAAAAATA
Found at i:79477 original size:33 final size:34
Alignment explanation
Indices: 79435--79514 Score: 101
Period size: 33 Copynumber: 2.4 Consensus size: 34
79425 TGTTTTGGGA
* *
79435 ACTCATGAACAATC-AGTTGACATAGTGGGTAAT
1 ACTCATGAACAATCTAGTTGAAATAGTGGGTAAC
* *
79468 ACTCATGAACAA-CTGGTTGAAATAGTGTGTAAC
1 ACTCATGAACAATCTAGTTGAAATAGTGGGTAAC
*
79501 ACTTATGAACAATC
1 ACTCATGAACAATC
79515 GGTGACACAG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
32 1 0.03
33 38 0.95
34 1 0.03
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (34 bp):
ACTCATGAACAATCTAGTTGAAATAGTGGGTAAC
Done.