genome.fa.s7720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007720.1 Hibiscus syriacus cultivar Beakdansim tig00109952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65998

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3692--3761	3	23.7	3	89	2	106	37	1	0	61	1.05
5803--5853	21	2.3	21	86	6	66	21	3	1	72	1.11
9102--9133	15	2.1	15	94	0	55	25	18	9	46	1.79
16794--16827	16	2.2	16	94	5	61	32	5	5	55	1.48
17837--18146	83	3.6	83	90	4	451	24	12	24	38	1.90
17984--18164	92	2.0	92	91	2	292	27	13	23	35	1.92
18487--18671	94	2.0	95	97	1	354	36	15	16	32	1.90
18982--19195	113	1.9	113	91	3	351	36	13	21	28	1.91
19101--19516	123	3.4	124	83	5	479	40	16	19	23	1.91
19673--19744	3	24.0	3	88	0	108	37	1	0	61	1.05
22701--22735	15	2.2	16	90	5	54	0	11	14	74	1.08
24101--24745	54	11.9	54	84	0	808	28	15	19	36	1.92
31338--31656	54	5.9	54	90	0	485	29	17	19	33	1.95
32411--32464	24	2.2	24	87	6	74	64	0	3	31	1.11
35867--35923	21	2.7	21	91	0	96	22	8	24	43	1.81
36500--36969	2	233.5	2	92	4	741	2	0	46	49	1.22
37129--37199	30	2.4	30	92	0	115	23	21	16	38	1.93
37534--37598	25	2.6	25	83	7	80	41	0	20	38	1.52
38081--38151	5	14.6	5	94	5	128	38	0	0	61	0.96
44583--44671	2	45.5	2	78	12	96	44	0	3	51	1.18
44825--44889	13	5.0	13	90	0	94	32	16	23	27	1.96
47572--47616	3	15.0	3	86	9	65	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48883--49178	36	8.2	36	80	5	296	39	17	12	30	1.87
50010--50253	38	6.4	38	80	3	240	34	21	8	34	1.84
50004--50261	19	13.5	19	80	4	205	34	20	9	35	1.85
51704--51815	56	2.0	56	96	0	206	39	8	17	34	1.80
61278--61303	12	2.2	12	100	0	52	23	15	11	50	1.76
61791--61831	21	2.0	21	90	0	64	34	0	14	51	1.43
64309--64359	25	2.1	23	82	13	59	41	17	7	33	1.79

Tables:   1

The End!