Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007721.1 Hibiscus syriacus cultivar Beakdansim tig00109957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3738426
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 16
Found at i:1697488 original size:54 final size:54
Alignment explanation
Indices: 1697353--1697490 Score: 181
Period size: 54 Copynumber: 2.6 Consensus size: 54
1697343 TGGTAAGGCG
* * *
1697353 TGCCCACGCCTTAACTGTAGACTTCTTCTGCGATAGCTCAAGATGAATAAGTCA
1 TGCCCACGCCTTAACTGAAAACCTCTTCTGCGATAGCTCAAGATGAATAAGTCA
* * *
1697407 TGCCCACGCCTTAACTGTAGACTTCTTCTGCGATAGCTCAAGATGAATAAGTCA
1 TGCCCACGCCTTAACTGAAAACCTCTTCTGCGATAGCTCAAGATGAATAAGTCA
*
1697461 TGCCCACG-CTTTA-TGCAAAAACCTCTTCTG
1 TGCCCACGCCTTAACTG--AAAACCTCTTCTG
1697491 GTCTTCGAAT
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
52 2 0.03
53 4 0.05
54 72 0.92
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (54 bp):
TGCCCACGCCTTAACTGAAAACCTCTTCTGCGATAGCTCAAGATGAATAAGTCA
Found at i:1698110 original size:31 final size:33
Alignment explanation
Indices: 1698072--1698138 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 33
1698062 TCTTATCAAA
1698072 ATTTAAAAAATAATT-TAAT-TATA-TTTTATAT
1 ATTT-AAAAATAATTATAATATATATTTTTATAT
*
1698103 ATTTAAAAATGATTATAATAATATATTTTTATAT
1 ATTTAAAAATAATTATAAT-ATATATTTTTATAT
1698137 AT
1 AT
1698139 AAATTTTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
30 9 0.29
31 8 0.26
33 4 0.13
34 10 0.32
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (33 bp):
ATTTAAAAATAATTATAATATATATTTTTATAT
Found at i:1698801 original size:95 final size:95
Alignment explanation
Indices: 1698681--1698885 Score: 272
Period size: 97 Copynumber: 2.1 Consensus size: 95
1698671 CAATTAAATC
* * * ** *
1698681 AAAA-ATAATTTTAAAAAATTGTGAATTTAATAAATTCATATTTTTTAAAAT-A-ATAATTTTAT
1 AAAATATACTTTT-AAAAATTCTGAATTTAATAAATTCACA-TTTAAAAAATAATATAATTTCAT
* * *
1698743 GAATCAAAAGATTACTTGTAAGTTATACTTTTT
64 GAATCAAAAGACTAATTATAAGTTATAC-TTTT
1698776 AAAATATACTTTTAAAAATTCTGAATTTAATAAATTCACATTTAAAAAATAATTATAATTTCATG
1 AAAATATACTTTTAAAAATTCTGAATTTAATAAATTCACATTTAAAAAATAA-TATAATTTCATG
1698841 AATCAAAAGACTAATTATAAGTTATACTTTT
65 AATCAAAAGACTAATTATAAGTTATACTTTT
1698872 AAAATATACTTTTA
1 AAAATATACTTTTA
1698886 TAACTTTAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
94 8 0.08
95 30 0.31
96 25 0.26
97 34 0.35
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (95 bp):
AAAATATACTTTTAAAAATTCTGAATTTAATAAATTCACATTTAAAAAATAATATAATTTCATGA
ATCAAAAGACTAATTATAAGTTATACTTTT
Found at i:1699871 original size:24 final size:28
Alignment explanation
Indices: 1699836--1699891 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 28
1699826 GATAATAATA
1699836 ATAAATATTT-TATAATTTT-AAAA-ATT
1 ATAAAT-TTTATATAATTTTGAAAACATT
1699862 ATAAATTTTATATAATTTTGAAAACATT
1 ATAAATTTTATATAATTTTGAAAACATT
1699890 AT
1 AT
1699892 TACCTTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 3 0.11
26 15 0.56
27 4 0.15
28 5 0.19
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (28 bp):
ATAAATTTTATATAATTTTGAAAACATT
Found at i:1700356 original size:25 final size:26
Alignment explanation
Indices: 1700323--1700371 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1700313 TCAATAATTT
**
1700323 TTTTTAAAA-TATATGAAATTTATAA
1 TTTTTAAAATTATAAAAAATTTATAA
1700348 TTTTTAAAATTATAAAAAATTTAT
1 TTTTTAAAATTATAAAAAATTTAT
1700372 TATTATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
TTTTTAAAATTATAAAAAATTTATAA
Found at i:1700749 original size:2 final size:2
Alignment explanation
Indices: 1700742--1700779 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1700732 ATACGCCGAA
1700742 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1700780 GACAGTCGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1705533 original size:3 final size:3
Alignment explanation
Indices: 1705525--1705558 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
1705515 TGTGGCTCTG
1705525 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1705559 TTTGTAAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:1708442 original size:31 final size:31
Alignment explanation
Indices: 1708399--1708476 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
1708389 TGAATCTTAC
1708399 CCTA-AGAAGAGTCCGAAGATAGTGCTAGAG
1 CCTAGAGAAGAGTCCGAAGATAGTGCTAGAG
*
1708429 CCTAGATAAGAGTCCGAAGATAGTGCTAGAG
1 CCTAGAGAAGAGTCCGAAGATAGTGCTAGAG
1708460 CCTAGAGAAGAGTCCGA
1 CCTAGAGAAGAGTCCGA
1708477 GCAAAGTGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 4 0.09
31 41 0.91
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (31 bp):
CCTAGAGAAGAGTCCGAAGATAGTGCTAGAG
Found at i:1710558 original size:15 final size:16
Alignment explanation
Indices: 1710531--1710563 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
1710521 AAATAAATAC
*
1710531 AATGGAAACAAATGTG
1 AATGGAAACAAATATG
1710547 AATGGAAA-AAATATG
1 AATGGAAACAAATATG
1710562 AA
1 AA
1710564 ATAAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.21, T:0.18
Consensus pattern (16 bp):
AATGGAAACAAATATG
Found at i:1712431 original size:12 final size:11
Alignment explanation
Indices: 1712387--1712434 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
1712377 TACATACATA
1712387 TATCATATTAT
1 TATCATATTAT
*
1712398 TATCACTATTAA
1 TATCA-TATTAT
*
1712410 TATTCTTATTAT
1 TA-TCATATTAT
1712422 TATCAATATTAT
1 TATC-ATATTAT
1712434 T
1 T
1712435 TTCCTTCACT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 7 0.23
12 21 0.70
13 2 0.07
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.54
Consensus pattern (11 bp):
TATCATATTAT
Found at i:1713824 original size:25 final size:25
Alignment explanation
Indices: 1713789--1713838 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
1713779 CACATAAAAA
*
1713789 CCATATTAACCTACTCTTATTCATG
1 CCATATCAACCTACTCTTATTCATG
1713814 CCATATCAACCTACTCTTATTCATG
1 CCATATCAACCTACTCTTATTCATG
1713839 TAATCATGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.04, T:0.38
Consensus pattern (25 bp):
CCATATCAACCTACTCTTATTCATG
Found at i:1717951 original size:16 final size:17
Alignment explanation
Indices: 1717930--1717962 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1717920 ATTATCATAT
*
1717930 ATTATTCTCAT-TAATC
1 ATTATTATCATCTAATC
1717946 ATTATTATCATCTAATC
1 ATTATTATCATCTAATC
1717963 TGACACTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTATTATCATCTAATC
Found at i:1720834 original size:3 final size:3
Alignment explanation
Indices: 1720828--1720878 Score: 93
Period size: 3 Copynumber: 16.7 Consensus size: 3
1720818 TATTATTAAG
1720828 ATA ATA ATA ATA ATA ATTA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1720874 ATA AT
1 ATA AT
1720879 CGTAATAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:1721471 original size:134 final size:134
Alignment explanation
Indices: 1721079--1721480 Score: 398
Period size: 134 Copynumber: 3.0 Consensus size: 134
1721069 GGATACTAGA
* ** * ** * * * *
1721079 GATAACACGGTTCCTACGCGATGAGGAAGTATGGCTATCTAAGGATGACAC-GATCCTACGTGAT
1 GATAACACGATTCCTACATGATGAGGACGGCTGGTTATCTAAGGTTGACGCGGCTCCTACGTGAT
* * * *
1721143 GAGGAGATAT-AGTTGGTGGATGACATTGTTCCTACATAATGAGGACGGCTGACCATCTTTAGGG
66 GAGGAGATATGA-TTAGTGGATGACATGGTTCCTACGTAATGAGGACGACTGACCATCTTTAGGG
*
1721207 ATAAATGGT
130 ----ATGAT
* * * * *
1721216 GATAACA-TAGTTCTTACATGATGAGGACGGCTGGTTATCTTAGGTTGACGCGACTCTTACGTGA
1 GATAACACGA-TTCCTACATGATGAGGACGGCTGGTTATCTAAGGTTGACGCGGCTCCTACGTGA
* * * * * * * * * *
1721280 TGAGGAGATTTGGTCAGTGGTTGACACGATTCCTACGTCATAAGGATGGA-TGGCCATCTTTAGG
65 TGAGGAGATATGATTAGTGGATGACATGGTTCCTACGTAATGAGGA-CGACTGACCATCTTTAGG
1721344 GATGAT
129 GATGAT
*
1721350 GATAACACGATTCCTACATGATGAGGACGGCTGGTTATCTAAAGTTGACGCGGCTCCTACGTGAT
1 GATAACACGATTCCTACATGATGAGGACGGCTGGTTATCTAAGGTTGACGCGGCTCCTACGTGAT
* ** *
1721415 GAGGAGATCTGATTAGTGGATGACATGGTTCCTACGTGGTGAGGACGACTGACCATCTTTAAGGA
66 GAGGAGATATGATTAGTGGATGACATGGTTCCTACGTAATGAGGACGACTGACCATCTTTAGGGA
1721480 T
131 T
1721481 AATTTGTTTC
Statistics
Matches: 211, Mismatches: 48, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
133 2 0.01
134 112 0.53
135 1 0.00
137 38 0.18
138 57 0.27
139 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (134 bp):
GATAACACGATTCCTACATGATGAGGACGGCTGGTTATCTAAGGTTGACGCGGCTCCTACGTGAT
GAGGAGATATGATTAGTGGATGACATGGTTCCTACGTAATGAGGACGACTGACCATCTTTAGGGA
TGAT
Found at i:1721650 original size:66 final size:65
Alignment explanation
Indices: 1721483--1721682 Score: 269
Period size: 66 Copynumber: 3.0 Consensus size: 65
1721473 TTAAGGATAA
* ** *
1721483 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTTTTTTGAGGGAAACAATCTCAAAGGT
1 TTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTTTTTCAAGGGAAACAATCTCAAAGAT
* *
1721547 TTGTGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAACTTTATTTCAAGGGAAACAAACTCAAAG
1 TT-TGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTT-TTTCAAGGGAAACAATCTCAAAG
1721612 AT
64 AT
* * *
1721614 ATTT-TTTTAAGAGAAACTGTCTCAAGAGAGATAAAACTTTGTTTCAAGAGAAACAATCTCAAAG
1 -TTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTT-TTTCAAGGGAAACAATCTCAAAG
1721678 AT
64 AT
1721680 TTT
1 TTT
1721683 TATTTTTTTA
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
64 2 0.02
65 35 0.29
66 59 0.49
67 22 0.18
68 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (65 bp):
TTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTTTTTCAAGGGAAACAATCTCAAAGAT
Found at i:1721751 original size:142 final size:143
Alignment explanation
Indices: 1721550--1721808 Score: 355
Period size: 143 Copynumber: 1.8 Consensus size: 143
1721540 CAAAGGTTTG
* * *
1721550 TGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAACTTTATTTCAAGGGAAACAAACTCAAAGATA
1 TGTTTAAAGAGAAACTATCTCAAGAAAGACAAAACTTTATTTCAAGGGAAACAAACTCAAAGAT-
* *
1721615 TT-T-TTTTAAGAGAAACTGTCTCAAGAGAGATAAAACTTTGTTTCAAGAGAAACAATCTCAAAG
65 TTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC-TTGTTTCAAGAGAAACAATCTCAAAG
1721678 ATTTTTATTTTTTTA
129 ATTTTTATTTTTTTA
* * * *
1721693 TGTTTCAAGAGAAACTATCTCAAGAAAGA-ATAAA-TTTATTTCTAGGGAAACAATCTCAAAGGT
1 TGTTTAAAGAGAAACTATCTCAAGAAAGACA-AAACTTTATTTCAAGGGAAACAAACTCAAAGAT
* * *
1721756 TTATGTTTCAAGTGAAACTGTCTTAAGAGAGACAAAACTTGTTTCAAGGGAAA
65 TTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAA
1721809 TTGTCTCAAG
Statistics
Matches: 101, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
141 2 0.02
142 42 0.42
143 57 0.56
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.31
Consensus pattern (143 bp):
TGTTTAAAGAGAAACTATCTCAAGAAAGACAAAACTTTATTTCAAGGGAAACAAACTCAAAGATT
TATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTCAAAGAT
TTTTATTTTTTTA
Found at i:1721806 original size:66 final size:66
Alignment explanation
Indices: 1721689--1721978 Score: 260
Period size: 66 Copynumber: 4.3 Consensus size: 66
1721679 TTTTTATTTT
* * * * *
1721689 TTTATGTTTCAAGAGAAACTATCTCAAGAAAGA-ATAAATTTATTTCTAGGGAAACAATCTCAAA
1 TTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACA-AAACTTGTTTCAAGGGAAACAATCTCAAA
1721753 GG
65 GG
* * ***
1721755 TTTATGTTTCAAGTGAAACTGTCTTAAGAGAGACAAAACTTGTTTCAAGGGAAATTGTCTCAAGG
1 TTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGGGAAACAATCTCAA--
*
1721820 GAGAC
64 -AG-G
*** * * * * *
1721825 AAAACTTGTTTCAAGGGAAACTGTCTCAAGGGAGACACAACTTGTTTCAAGGGAAA-TATCTCGA
1 TTTA--TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGGGAAACAATCTCAA
*
1721889 AGA
64 AGG
* * * *
1721892 TTTTTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGGAATCAATCTTAAA
1 TTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC-TTGTTTCAAGGGAAACAATCTCAAA
1721957 GG
65 GG
*
1721959 TTTTATGTTTCAAGTGAAAC
1 -TTTATGTTTCAAGAGAAAC
1721979 AATTTCCAAA
Statistics
Matches: 177, Mismatches: 37, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
65 31 0.18
66 65 0.37
67 8 0.05
68 18 0.10
69 2 0.01
70 1 0.01
71 6 0.03
72 46 0.26
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (66 bp):
TTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGGGAAACAATCTCAAAG
G
Found at i:1721814 original size:36 final size:36
Alignment explanation
Indices: 1721759--1721945 Score: 199
Period size: 36 Copynumber: 5.4 Consensus size: 36
1721749 CAAAGGTTTA
* * *
1721759 TGTTTCAAGTGAAACTGTCTTAAGAGAGACAAAACT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAACT
*
1721795 TGTTTCAAGGGAAATTGTCTCAAGGGAGACAAAACT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAACT
*
1721831 TGTTTCAAGGGAAACTGTCTCAAGGGAGACACAACT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAACT
* * ***
1721867 TGTTTCAAGGGAAA-TATCTC----GA-A-GATTTT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAACT
* * *
1721896 TGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAAC-T
1721933 TGTTTCAAGGGAA
1 TGTTTCAAGGGAA
1721946 TCAATCTTAA
Statistics
Matches: 122, Mismatches: 21, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
29 13 0.11
30 6 0.05
31 2 0.02
34 2 0.02
35 6 0.05
36 81 0.66
37 12 0.10
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGGGAGACAAAACT
Found at i:1721838 original size:21 final size:21
Alignment explanation
Indices: 1721784--1721878 Score: 79
Period size: 21 Copynumber: 5.1 Consensus size: 21
1721774 TGTCTTAAGA
1721784 GAGACAAAACTTGTTTCAA-G
1 GAGACAAAACTTGTTTCAAGG
*
1721804 G-G---AAA-TTGTCTCAAGG
1 GAGACAAAACTTGTTTCAAGG
1721820 GAGACAAAACTTGTTTCAA-G
1 GAGACAAAACTTGTTTCAAGG
*
1721840 G-G---AAAC-TGTCTCAAGG
1 GAGACAAAACTTGTTTCAAGG
*
1721856 GAGACACAACTTGTTTCAAGG
1 GAGACAAAACTTGTTTCAAGG
1721877 GA
1 GA
1721879 AATATCTCGA
Statistics
Matches: 58, Mismatches: 5, Indels: 23
0.67 0.06 0.27
Matches are distributed among these distances:
15 15 0.26
16 11 0.19
17 2 0.03
19 2 0.03
20 9 0.16
21 19 0.33
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (21 bp):
GAGACAAAACTTGTTTCAAGG
Found at i:1722079 original size:63 final size:66
Alignment explanation
Indices: 1721975--1722116 Score: 166
Period size: 63 Copynumber: 2.2 Consensus size: 66
1721965 GTTTCAAGTG
* * * * *
1721975 AAACAATTTCCAAATTTGGTGTTTTAAGGGAAAACTGTCTCAAGTGAGACGAA-TCTGTTTTGA-
1 AAACAATAT-CAAATTTCGTGTCTTAAGGGAAAACTATCTCAAGTGAGACAAAGTCTGTTTTGAG
1722038 AA
65 AA
* * *
1722040 AAA-AATCTCAAATGTTCGTGTCTTAA-GGAAGACTATCTCAAGTGAGACAAAGTTTGTTTTGAG
1 AAACAATATCAAAT-TTCGTGTCTTAAGGGAAAACTATCTCAAGTGAGACAAAGTCTGTTTTGAG
1722103 AA
65 AA
1722105 AAACAATATCAA
1 AAACAATATCAA
1722117 GTGAGATCAA
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
63 27 0.42
64 23 0.35
65 8 0.12
66 7 0.11
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (66 bp):
AAACAATATCAAATTTCGTGTCTTAAGGGAAAACTATCTCAAGTGAGACAAAGTCTGTTTTGAGA
A
Found at i:1724807 original size:14 final size:15
Alignment explanation
Indices: 1724788--1724816 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1724778 TGAAATGAAG
1724788 ATGC-AAAATGAAAA
1 ATGCAAAAATGAAAA
1724802 ATGCAAAAATGAAAA
1 ATGCAAAAATGAAAA
1724817 TGTAGATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (15 bp):
ATGCAAAAATGAAAA
Found at i:1724817 original size:14 final size:13
Alignment explanation
Indices: 1724780--1724818 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
1724770 TAAATAAATG
*
1724780 AAATGAAGATGCA
1 AAATGAAAATGCA
1724793 AAATGAAAAATGCAA
1 AAATG-AAAATGC-A
1724808 AAATGAAAATG
1 AAATGAAAATG
1724819 TAGATGCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 6 0.26
ACGTcount: A:0.62, C:0.05, G:0.18, T:0.15
Consensus pattern (13 bp):
AAATGAAAATGCA
Found at i:1729689 original size:701 final size:709
Alignment explanation
Indices: 1728596--1730000 Score: 2024
Period size: 711 Copynumber: 2.0 Consensus size: 709
1728586 CCAAAAATTT
*
1728596 GGATATCTTATCCGTTTTTCAATTTTCGGATAGTTCAGATCGGATATCCGAAATTTTTTCCGGAT
1 GGATATCTGATCCGTTTTTCAATTTTCGGATAGTTCAGATCGGATATCCGAAATTTTTTCCGGAT
* * * *
1728661 TATCGAAACGGATATGGATCGATAAAAATCCATGTTCAGTTTATCTGAAAACCCGAAAAAAATTT
66 TATCGAAACGGATACGGATCAATAAAAATCCATGTTCAGATTATCCGAAAACCCGAAAAAAATTT
* * * * *
1728726 GGGCTATATTTGACCCAGAGCTATTTCTCTTCTCCACCTTAGCGCATTTCTATACTCCACCATGC
131 GGGCTATATTCGACCCAAAGATATTTCTCTACTCCACCTTAGCGCATTTCTATACTCCACCACGC
*
1728791 CGACCCAGAGTTGTTTGTACCCTCAATCCCTAATTTCCCTATTTTTCATCATCCCCTTCCCTTCG
196 CGACCCAGAGCTGTTTGTACCCTCAATCCCTAATTTCCCTATTTTTCATCATCCCCTTCCCTTCG
*
1728856 TTATCGGCCTTAGAATTTTTTGACGCCATTCAAAGTTCAAATCTCGCCTTTCTCTTTTTCTTCAG
261 TTATCGGCCTTAGAATTTTTGGACGCCATTCAAAGTTCAAATCTCGCCTTTCTCTTTTTCTTCAG
* *
1728921 CTCTATTCCTCTCTATTTTTCCAATCTGTAAGTTTCTTCTATTCTTCAATCCATAACTTTCAAGG
326 CTCCATTCCTCTCTATTTTTCCAATCTGTAAGTTTCTTCTATTCTTCAATACATAACTTTCAAGG
* *
1728986 CTTTAATGATGCAAATATTCGTGACTTAAATGTTGGAAATCA-TTTG-TT-TTCTCT-T-CTGCT
391 CTTTAATGATGCAAATATTCGTGACTTAAATGTTGAAAATCATTTTGTTTGTTCTCTATGCTGCC
* * * * *
1729046 TGTACCATTATTTGTTTTCTAGCTTGGTCTGTTTTTATTTCGTCATAGCTAAAAGTGTTTCGATT
456 TGCACCATCATTTGTTTTCTAGCCTGGTCTGTTTTCATTTCGTCATAGCTAAAACTGTTTCGATT
* * * * * * *
1729111 GGGCATTTGTTGTGCGTAAATTTCCTGGCTACTATTTGCCTTTCATAGCAATATACACTGTACAT
521 GGGCATTTGCTGTGCGTAAACTTCATGGCTACTACTTCCCTTTCACAACAATATACACTGTACAT
* **
1729176 TCTTTTGATGTTTTAATGATCCAATGGTTGTTGAAAAA-GAGATTTTTTGCATTCTTGGTTCAGG
586 GCTTTTGATGTTTTAATGATCCAATGGTTGTAAAAAAATG-GATTTTTTGCATTCTTGGTTCAGG
* *
1729240 GGAGGGGGTAAATGTAAACTAATCAAAGATTGATGGCTCCTTATTATGACCCAGATTATC
650 GGAGGGGGTAAATGTAAACTAATAAAAGATTGATGGCTCCTTAATATGACCCAGATTATC
* * * **
1729300 GGATATCTGATCTGTTTTTTAATTTTCGGATAGTTCAGATCGGATATCTG-AATTTTTT-TTGAT
1 GGATATCTGATCCGTTTTTCAATTTTCGGATAGTTCAGATCGGATATCCGAAATTTTTTCCGGA-
* * *
1729363 TTATCGGATCGGATACGGATCAATAAAAAAT-CATGTTCGGATTATCCGAAAACCCGAAAAAAAT
65 TTATCGAAACGGATACGGATCAAT-AAAAATCCATGTTCAGATTATCCGAAAACCCGAAAAAAAT
* * * *
1729427 TTGGGCTATATTCGACCCAAAGATATTTTTGTACTCCACCTTAG-TCTTTTCTATACTCCACCAC
129 TTGGGCTATATTCGACCCAAAGATATTTCTCTACTCCACCTTAGCGCATTTCTATACTCCACCAC
**
1729491 GCCGACCCAGAGCTGTTTGTACCCTCAATCCCTAATTT-CCTATTTTTTGTCATCCCCTT-CCTC
194 GCCGACCCAGAGCTGTTTGTACCCTCAATCCCTAATTTCCCTATTTTTCATCATCCCCTTCCCT-
* * *
1729554 TCGTTATCTGTCTTAGAATTTTTGGACGCCCTTCAAAGTTCAAATCTCGCCTTTCTCTTTTTCTT
258 TCGTTATCGGCCTTAGAATTTTTGGACGCCATTCAAAGTTCAAATCTCGCCTTTCTCTTTTTCTT
* * * * * * *
1729619 CAGCTCCATTCCTCTCTGTTTTTTCAATTTGTAAGTTTCTTCTTTTCTTCAATATATAGCTTTGA
323 CAGCTCCATTCCTCTCTATTTTTCCAATCTGTAAGTTTCTTCTATTCTTCAATACATAACTTTCA
*
1729684 AGGCTTTAATGATGCAAATATTCGTGACTTAAATGTTGAAAATCATTTGTTTTTGTTTGTTTTCT
388 AGGCTTTAATGATGCAAATATTCGTGACTTAAATGTTGAAAATCA-----TTTTGTTTGTTCTCT
* * *
1729749 ATGCTGCCTGCACCATCATTTGTTTTCTTGCCTGGTCTGTTTTCCTTTCGTCATAGCTAACACTG
448 ATGCTGCCTGCACCATCATTTGTTTTCTAGCCTGGTCTGTTTTCATTTCGTCATAGCTAAAACTG
* **
1729814 TTTCGATTGGGCATTTGCTGTGCGTAAACTTCATGGCTACTGCTTCCCTTTCACAACAATATATG
513 TTTCGATTGGGCATTTGCTGTGCGTAAACTTCATGGCTACTACTTCCCTTTCACAACAATATACA
* * *
1729879 CTTTGCATGCTTTTTATGTTTTAATGATCCAATGGTTGTAAAAAAATGGATTTTTTGCATTCTTG
578 CTGTACATGCTTTTGATGTTTTAATGATCCAATGGTTGTAAAAAAATGGATTTTTTGCATTCTTG
* *
1729944 GTTCAGGGGAGGGGGTAAATGTTAACTAATAAAAGATTGATGTCTCCTTAATATGAC
643 GTTCAGGGGAGGGGGTAAATGTAAACTAATAAAAGATTGATGGCTCCTTAATATGAC
1730001 TTCACATAAA
Statistics
Matches: 618, Mismatches: 69, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
700 3 0.00
701 180 0.29
702 56 0.09
703 96 0.16
704 52 0.08
707 4 0.01
708 2 0.00
709 5 0.01
710 1 0.00
711 218 0.35
712 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (709 bp):
GGATATCTGATCCGTTTTTCAATTTTCGGATAGTTCAGATCGGATATCCGAAATTTTTTCCGGAT
TATCGAAACGGATACGGATCAATAAAAATCCATGTTCAGATTATCCGAAAACCCGAAAAAAATTT
GGGCTATATTCGACCCAAAGATATTTCTCTACTCCACCTTAGCGCATTTCTATACTCCACCACGC
CGACCCAGAGCTGTTTGTACCCTCAATCCCTAATTTCCCTATTTTTCATCATCCCCTTCCCTTCG
TTATCGGCCTTAGAATTTTTGGACGCCATTCAAAGTTCAAATCTCGCCTTTCTCTTTTTCTTCAG
CTCCATTCCTCTCTATTTTTCCAATCTGTAAGTTTCTTCTATTCTTCAATACATAACTTTCAAGG
CTTTAATGATGCAAATATTCGTGACTTAAATGTTGAAAATCATTTTGTTTGTTCTCTATGCTGCC
TGCACCATCATTTGTTTTCTAGCCTGGTCTGTTTTCATTTCGTCATAGCTAAAACTGTTTCGATT
GGGCATTTGCTGTGCGTAAACTTCATGGCTACTACTTCCCTTTCACAACAATATACACTGTACAT
GCTTTTGATGTTTTAATGATCCAATGGTTGTAAAAAAATGGATTTTTTGCATTCTTGGTTCAGGG
GAGGGGGTAAATGTAAACTAATAAAAGATTGATGGCTCCTTAATATGACCCAGATTATC
Found at i:1733814 original size:34 final size:35
Alignment explanation
Indices: 1733774--1733842 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 35
1733764 ATTCTTCATG
* *
1733774 GGGTATCGATACCGAA-GTGGTAGTAT-GGTACCAT
1 GGGTATCGATACC-AATGTGGAAGTATCGATACCAT
1733808 GGGTATCGATACCAATGTGGAAGTATCGATACCAT
1 GGGTATCGATACCAATGTGGAAGTATCGATACCAT
1733843 TTTTGTAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
33 2 0.06
34 22 0.71
35 7 0.23
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (35 bp):
GGGTATCGATACCAATGTGGAAGTATCGATACCAT
Found at i:1734667 original size:21 final size:21
Alignment explanation
Indices: 1734631--1734753 Score: 102
Period size: 21 Copynumber: 5.8 Consensus size: 21
1734621 GTCCTTCGAG
**
1734631 ACATATATGTAATCCTTTGGA
1 ACATATATGTGGTCCTTTGGA
* * * *
1734652 ATATATATGCGGTCCTTCGGG
1 ACATATATGTGGTCCTTTGGA
*
1734673 ACATATATTTGGTCCTTTGGA
1 ACATATATGTGGTCCTTTGGA
* *
1734694 ACATATATGTGGTCCTTAGGG
1 ACATATATGTGGTCCTTTGGA
* * *
1734715 ACAATTCTATGTGGTCCTTCGGG
1 AC-A-TATATGTGGTCCTTTGGA
* *
1734738 ACATTTATGTAGTCCT
1 ACATATATGTGGTCCT
1734754 ACGAGACATA
Statistics
Matches: 82, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
21 62 0.76
22 2 0.02
23 18 0.22
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (21 bp):
ACATATATGTGGTCCTTTGGA
Found at i:1734678 original size:23 final size:23
Alignment explanation
Indices: 1734620--1734769 Score: 97
Period size: 21 Copynumber: 7.0 Consensus size: 23
1734610 GGTTTTACGC
*
1734620 GGTCCTTCGAGAC--ATATATGT
1 GGTCCTTCGGGACATATATATGT
** * *
1734641 AATCCTT-TGGA-ATATATATGC
1 GGTCCTTCGGGACATATATATGT
1734662 GGTCCTTCGGGACATATAT-T-T
1 GGTCCTTCGGGACATATATATGT
* *
1734683 GGTCCTT-TGGA-ACATATATGT
1 GGTCCTTCGGGACATATATATGT
* *
1734704 GGTCCTTAGGGACA-ATTCTATGT
1 GGTCCTTCGGGACATA-TATATGT
1734727 GGTCCTTCGGGACAT-T-TATGT
1 GGTCCTTCGGGACATATATATGT
* * * *
1734748 AGTCCTACGAGACATATGTATG
1 GGTCCTTCGGGACATATATATG
1734770 GTTCTTCAGG
Statistics
Matches: 100, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
19 5 0.05
20 6 0.06
21 49 0.49
22 10 0.10
23 30 0.30
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (23 bp):
GGTCCTTCGGGACATATATATGT
Found at i:1734716 original size:42 final size:42
Alignment explanation
Indices: 1734620--1734764 Score: 146
Period size: 42 Copynumber: 3.4 Consensus size: 42
1734610 GGTTTTACGC
* ** * *
1734620 GGTCCTTCGAGACATATATGTAATCCTTTGGAATATATATGC
1 GGTCCTTCGGGACATATATGTGGTCCTTTGGAACATATATGT
*
1734662 GGTCCTTCGGGACATATATTTGGTCCTTTGGAACATATATGT
1 GGTCCTTCGGGACATATATGTGGTCCTTTGGAACATATATGT
* * * * *
1734704 GGTCCTTAGGGACAATTCTATGTGGTCCTTCGGGACATTTATGT
1 GGTCCTTCGGGAC-A-TATATGTGGTCCTTTGGAACATATATGT
* * *
1734748 AGTCCTACGAGACATAT
1 GGTCCTTCGGGACATAT
1734765 GTATGGTTCT
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 50 0.60
43 2 0.02
44 32 0.38
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (42 bp):
GGTCCTTCGGGACATATATGTGGTCCTTTGGAACATATATGT
Found at i:1736052 original size:65 final size:64
Alignment explanation
Indices: 1735960--1736092 Score: 160
Period size: 65 Copynumber: 2.0 Consensus size: 64
1735950 CTACTATTTC
* * * *
1735960 TTTTATTATGTTGTTAAGACTTGATACTTTTGTGTG-GTATTTTATTTTTGAACATCTTGTGTTG
1 TTTTATTATGTTGTTAAGACTTAATACTCTTGTGTGAGT-TTTTA-ATATGAACATCTTGTGTTG
1736024 A
64 A
* * * *
1736025 TTTTATTGTGTTGTTGAGATTTAATACTCTTGTGTGATGTTTTTAATATGAACATCTTGTGTTTA
1 TTTTATTATGTTGTTAAGACTTAATACTCTTGTGTGA-GTTTTTAATATGAACATCTTGTGTTGA
1736090 TTT
1 TTT
1736093 GAGACTTGAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 51 0.88
66 5 0.09
67 2 0.03
ACGTcount: A:0.20, C:0.06, G:0.18, T:0.56
Consensus pattern (64 bp):
TTTTATTATGTTGTTAAGACTTAATACTCTTGTGTGAGTTTTTAATATGAACATCTTGTGTTGA
Found at i:1736108 original size:53 final size:53
Alignment explanation
Indices: 1736038--1736140 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
1736028 TATTGTGTTG
* * * * *
1736038 TTGAGATTTAATACTCTTGTGTGATGTTTTTAATATGAACATCTTGTGTTTAT
1 TTGAGACTTAATACTCTTATGTAATATTTTTAATATGAACATCTTATGTTTAT
* * * *
1736091 TTGAGACTTGATACTCTTATGTAATATTTTTATTTTGTACATCTTATGTT
1 TTGAGACTTAATACTCTTATGTAATATTTTTAATATGAACATCTTATGTT
1736141 GGTTTATTGT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 41 1.00
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (53 bp):
TTGAGACTTAATACTCTTATGTAATATTTTTAATATGAACATCTTATGTTTAT
Found at i:1742517 original size:19 final size:19
Alignment explanation
Indices: 1742493--1742531 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1742483 TTGAATTGAA
1742493 TAAAA-TAAAAATATAAAAT
1 TAAAATTAAAAA-ATAAAAT
*
1742512 TAAAATTAACAAATAAAAT
1 TAAAATTAAAAAATAAAAT
1742531 T
1 T
1742532 GCTTATTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (19 bp):
TAAAATTAAAAAATAAAAT
Found at i:1744260 original size:19 final size:19
Alignment explanation
Indices: 1744236--1744302 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
1744226 GAATATCAAG
1744236 TTAAAATTAA-GCATCAAAA
1 TTAAAATTAATG-ATCAAAA
*
1744255 TTAAAATTAATGATCAATA
1 TTAAAATTAATGATCAAAA
* *
1744274 TTAAAATTTACTTATCAAAA
1 TTAAAA-TTAATGATCAAAA
*
1744294 TTAATATTA
1 TTAAAATTA
1744303 TCATGACTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 25 0.61
20 16 0.39
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.37
Consensus pattern (19 bp):
TTAAAATTAATGATCAAAA
Found at i:1745326 original size:2 final size:2
Alignment explanation
Indices: 1745319--1745352 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1745309 GTGGTGTAGA
1745319 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1745353 TTAAATTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1745674 original size:14 final size:14
Alignment explanation
Indices: 1745651--1745697 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
1745641 CGTTCGGTAA
1745651 TATGTATGTTCATT
1 TATGTATGTTCATT
*
1745665 TATTTATGTTCATT
1 TATGTATGTTCATT
**
1745679 TATGTGCGTTCATT
1 TATGTATGTTCATT
1745693 TATGT
1 TATGT
1745698 TTAGTCCAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.09, G:0.15, T:0.57
Consensus pattern (14 bp):
TATGTATGTTCATT
Found at i:1745915 original size:24 final size:23
Alignment explanation
Indices: 1745864--1745949 Score: 100
Period size: 23 Copynumber: 3.7 Consensus size: 23
1745854 TTTTCATTTA
* * *
1745864 TGTTCGTTTATGTTCATTTATTG
1 TGTTCATTTACGTTCGTTTATTG
*
1745887 TGTTCATTTACGTTCGTTTGTTTG
1 TGTTCATTTACGTTCGTTT-ATTG
* *
1745911 TGTTCGTTAACGTTCGTTTATTG
1 TGTTCATTTACGTTCGTTTATTG
*
1745934 TGTTCATTTATGTTCG
1 TGTTCATTTACGTTCG
1745950 CTCATTTGTG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
23 32 0.62
24 20 0.38
ACGTcount: A:0.12, C:0.12, G:0.20, T:0.57
Consensus pattern (23 bp):
TGTTCATTTACGTTCGTTTATTG
Found at i:1745918 original size:47 final size:47
Alignment explanation
Indices: 1745857--1745968 Score: 143
Period size: 47 Copynumber: 2.4 Consensus size: 47
1745847 AAATATATTT
* *
1745857 TCATTTATGTTCGTTTATGTTCATTTATTGTGTTCATTTACGTTCGT
1 TCATTTGTGTTCGTTTATGTTCATTTATTGTGTTCATTTACGTTCGC
** * * * *
1745904 TTGTTTGTGTTCGTTAACGTTCGTTTATTGTGTTCATTTATGTTCGC
1 TCATTTGTGTTCGTTTATGTTCATTTATTGTGTTCATTTACGTTCGC
*
1745951 TCATTTGTGTTTGTTTAT
1 TCATTTGTGTTCGTTTAT
1745969 CATTTAAATG
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.58
Consensus pattern (47 bp):
TCATTTGTGTTCGTTTATGTTCATTTATTGTGTTCATTTACGTTCGC
Found at i:1747415 original size:35 final size:35
Alignment explanation
Indices: 1747375--1747444 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
1747365 AGTATCCTCT
1747375 TTCATTCA-ATAAAGC-TAGTTCACTAATTAAACTAG
1 TTCATTCATATAAA-CAT-GTTCACTAATTAAACTAG
* *
1747410 TTCATTCATTTAAACATGTTCATTAATTAAACTAG
1 TTCATTCATATAAACATGTTCACTAATTAAACTAG
1747445 CTTTTTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 26 0.84
36 5 0.16
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.39
Consensus pattern (35 bp):
TTCATTCATATAAACATGTTCACTAATTAAACTAG
Found at i:1747422 original size:18 final size:17
Alignment explanation
Indices: 1747375--1747444 Score: 72
Period size: 18 Copynumber: 4.0 Consensus size: 17
1747365 AGTATCCTCT
1747375 TTCATTCAA-TAAAGCTAG
1 TTCATT-AATTAAA-CTAG
*
1747393 TTCACTAATTAAACTAG
1 TTCATTAATTAAACTAG
*
1747410 TTCATTCATTTAAAC-ATG
1 TTCATT-AATTAAACTA-G
1747428 TTCATTAATTAAACTAG
1 TTCATTAATTAAACTAG
1747445 CTTTTTATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
17 20 0.45
18 24 0.55
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.39
Consensus pattern (17 bp):
TTCATTAATTAAACTAG
Found at i:1750983 original size:18 final size:17
Alignment explanation
Indices: 1750945--1750995 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
1750935 AATAAAGCTA
* **
1750945 GTTCACTAATTAAACAA
1 GTTCATTAATTAAACTG
*
1750962 GTTCATTCATTTAAACTG
1 GTTCATT-AATTAAACTG
1750980 GTTCATTAATTAAACT
1 GTTCATTAATTAAACT
1750996 AGCTTTTTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (17 bp):
GTTCATTAATTAAACTG
Found at i:1750995 original size:17 final size:17
Alignment explanation
Indices: 1750937--1750997 Score: 68
Period size: 18 Copynumber: 3.5 Consensus size: 17
1750927 TTTAATTCAA
*
1750937 TAAAGCTAGTTCACTAAT
1 TAAA-CTAGTTCATTAAT
* *
1750955 TAAACAAGTTCATTCATT
1 TAAACTAGTTCATT-AAT
*
1750973 TAAACTGGTTCATTAAT
1 TAAACTAGTTCATTAAT
1750990 TAAACTAG
1 TAAACTAG
1750998 CTTTTTGTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
17 17 0.49
18 18 0.51
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (17 bp):
TAAACTAGTTCATTAAT
Found at i:1752625 original size:20 final size:20
Alignment explanation
Indices: 1752602--1752735 Score: 196
Period size: 20 Copynumber: 6.7 Consensus size: 20
1752592 GAATATGTAA
* * *
1752602 ATCGCAATGCGAGTATGACT
1 ATCGCAACGCGATTCTGACT
1752622 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
1752642 ATCGCAACGCGATTATGACT
1 ATCGCAACGCGATTCTGACT
*
1752662 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
1752682 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
* *
1752702 ATCGCAACGTGATGCTGACT
1 ATCGCAACGCGATTCTGACT
*
1752722 ATCGCAATGCGATT
1 ATCGCAACGCGATT
1752736 TTTAAATTGC
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 102 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:1752666 original size:60 final size:60
Alignment explanation
Indices: 1752574--1752733 Score: 205
Period size: 60 Copynumber: 2.7 Consensus size: 60
1752564 CGTTGTGATT
* * * *
1752574 TTCTGACTATTGCAATGCGAATATGTA-AATCGCAATGCGAGTATGACTATCGCAACGCGA
1 TTCTGACTATCGCAACGCGATTATG-ACTATCGCAATGCGAGTATGACTATCGCAACGCGA
* * * *
1752634 TTCTGACTATCGCAACGCGATTATGACTATCGCAACGAGATTCTGACTATCGCAACGCGA
1 TTCTGACTATCGCAACGCGATTATGACTATCGCAATGCGAGTATGACTATCGCAACGCGA
* **
1752694 TTCTGACTATCGCAACGTGATGCTGACTATCGCAATGCGA
1 TTCTGACTATCGCAACGCGATTATGACTATCGCAATGCGA
1752734 TTTTTAAATT
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
59 1 0.01
60 85 0.99
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (60 bp):
TTCTGACTATCGCAACGCGATTATGACTATCGCAATGCGAGTATGACTATCGCAACGCGA
Found at i:1753419 original size:20 final size:20
Alignment explanation
Indices: 1753315--1753421 Score: 101
Period size: 20 Copynumber: 5.5 Consensus size: 20
1753305 AGAATCGCAA
*
1753315 TGCGATTTT-AGTTTCGCGT
1 TGCGATTTTCATTTTCGCGT
1753334 TGCGATTTTCA-TTTCGCGT
1 TGCGATTTTCATTTTCGCGT
* ** **
1753353 TGCAATAGTCAAATTCGCGT
1 TGCGATTTTCATTTTCGCGT
** * *
1753373 TGCGATAGTCATTTTTGTGT
1 TGCGATTTTCATTTTCGCGT
*
1753393 TGCGATTTTCATTTTCGTGT
1 TGCGATTTTCATTTTCGCGT
1753413 TGCGATTTT
1 TGCGATTTT
1753422 AAGTTTCAGA
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
19 25 0.34
20 49 0.66
ACGTcount: A:0.15, C:0.16, G:0.22, T:0.47
Consensus pattern (20 bp):
TGCGATTTTCATTTTCGCGT
Found at i:1755362 original size:20 final size:20
Alignment explanation
Indices: 1755337--1755381 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1755327 TTTACTTTCG
1755337 CAACGCGAAAATGACTATCA
1 CAACGCGAAAATGACTATCA
** *
1755357 CAACGCGAATTTGACTATCG
1 CAACGCGAAAATGACTATCA
1755377 CAACG
1 CAACG
1755382 AAAGAATCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.18
Consensus pattern (20 bp):
CAACGCGAAAATGACTATCA
Found at i:1755466 original size:18 final size:19
Alignment explanation
Indices: 1755424--1755470 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
1755414 GCGATTCTCT
1755424 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCA-TTTCG
*
1755444 CGTTGCGATATTCA-TTCG
1 CGTTGCGATAGTCATTTCG
*
1755462 TGTTGCGAT
1 CGTTGCGAT
1755471 TTTAAGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 12 0.48
20 13 0.52
ACGTcount: A:0.15, C:0.19, G:0.26, T:0.40
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:1756001 original size:18 final size:19
Alignment explanation
Indices: 1755962--1756003 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
1755952 CTCACCTGTC
1755962 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-C-CCCCT
1755983 ATCGTTCAAGAGG-CCCCT
1 ATCGTTCAAGAGGCCCCCT
1756001 ATC
1 ATC
1756004 ATCCCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
21 13 0.62
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (19 bp):
ATCGTTCAAGAGGCCCCCT
Found at i:1757502 original size:13 final size:14
Alignment explanation
Indices: 1757466--1757526 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
1757456 TTGCTTGTTT
*
1757466 AATTGATTTATAAA
1 AATTGATTTGTAAA
1757480 AATTGATTTGTAAA
1 AATTGATTTGTAAA
* *
1757494 AGTTG-TTTGTTTAA
1 AATTGATTTG-TAAA
* *
1757508 TATTGATGTGTAAA
1 AATTGATTTGTAAA
1757522 TAATT
1 -AATT
1757527 CTTATTTGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
13 4 0.11
14 26 0.72
15 6 0.17
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.48
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:1757678 original size:20 final size:20
Alignment explanation
Indices: 1757625--1757678 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
1757615 AGGTACACTT
* **
1757625 TCGCAACGCTAAACTCAAAA
1 TCGCAACGCGAAAGACAAAA
*
1757645 TCGCAATGCGAAAGACAAAA
1 TCGCAACGCGAAAGACAAAA
*
1757665 TCGTAACGCGAAAG
1 TCGCAACGCGAAAG
1757679 TCAATTCGCG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.44, C:0.24, G:0.19, T:0.13
Consensus pattern (20 bp):
TCGCAACGCGAAAGACAAAA
Found at i:1757730 original size:34 final size:34
Alignment explanation
Indices: 1757687--1757812 Score: 117
Period size: 34 Copynumber: 3.5 Consensus size: 34
1757677 AGTCAATTCG
* *
1757687 CGTTGCGATAGTCTAATACGCTTTGCGATTTTCT
1 CGTTGCGATAGTCAAATACGCATTGCGATTTTCT
* * *
1757721 CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATACGCATTGCGAT--T----TTCT
* * **
1757761 CATTGCGATACTCAAATTTGCATTGCGATTTTCT
1 CGTTGCGATAGTCAAATACGCATTGCGATTTTCT
1757795 CGTTGCGATAGTCAAATA
1 CGTTGCGATAGTCAAATA
1757813 GCCGTTGCGA
Statistics
Matches: 72, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
34 44 0.61
36 1 0.01
38 1 0.01
40 26 0.36
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (34 bp):
CGTTGCGATAGTCAAATACGCATTGCGATTTTCT
Found at i:1757746 original size:20 final size:20
Alignment explanation
Indices: 1757721--1757959 Score: 167
Period size: 20 Copynumber: 12.8 Consensus size: 20
1757711 GCGATTTTCT
* *
1757721 CGTTGCGATAGTCAAATACC
1 CGTTGCGATAGTCAAATTCG
*
1757741 CGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* * *
1757761 CATTGCGATACTCAAATTTG
1 CGTTGCGATAGTCAAATTCG
* *
1757781 CATTGCGAT--T----TTCT
1 CGTTGCGATAGTCAAATTCG
*
1757795 CGTTGCGATAGTCAAA-TAG
1 CGTTGCGATAGTCAAATTCG
1757814 CCGTTGCGATAGTCAAATTCG
1 -CGTTGCGATAGTCAAATTCG
*
1757835 CGTTGCGAT--T----TTTG
1 CGTTGCGATAGTCAAATTCG
1757849 CGTTGCGATAGTCATAA-TCG
1 CGTTGCGATAGTCA-AATTCG
* *
1757869 TGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
1757889 CGTTGCGAT--T----TTTG
1 CGTTGCGATAGTCAAATTCG
* *
1757903 AGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
1757923 CGGTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
1757943 CGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAAT
1757960 GAATGTGTAA
Statistics
Matches: 172, Mismatches: 25, Indels: 44
0.71 0.10 0.18
Matches are distributed among these distances:
14 33 0.19
16 3 0.02
18 3 0.02
19 3 0.02
20 128 0.74
21 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:1757799 original size:54 final size:53
Alignment explanation
Indices: 1757741--1757951 Score: 271
Period size: 54 Copynumber: 3.9 Consensus size: 53
1757731 GTCAAATACC
* * * *
1757741 CGTTGCGATAATCAAATTCGCATTGCGATACTCAAATTTGCATTGCGATTTTCT-
1 CGTTGCGATAATCAAA-TCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTT-TG
* *
1757795 CGTTGCGATAGTCAAATAGCCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
1 CGTTGCGATAATCAAATCG-CGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
* * *
1757849 CGTTGCGATAGTCATAATCGTGTTGCGATAATCAAATTCGCGTTGCGATTTTTG
1 CGTTGCGATAATCA-AATCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
* *
1757903 AGTTGCGATAATCAAATTCGCGGTGCGATAGTCAAATTCGCGTTGCGAT
1 CGTTGCGATAATCAAA-TCGCGTTGCGATAGTCAAATTCGCGTTGCGAT
1757952 ATTCAAATGA
Statistics
Matches: 139, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
53 5 0.04
54 130 0.94
55 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (53 bp):
CGTTGCGATAATCAAATCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
Found at i:1757802 original size:74 final size:74
Alignment explanation
Indices: 1757681--1757843 Score: 254
Period size: 74 Copynumber: 2.2 Consensus size: 74
1757671 CGCGAAAGTC
* * *
1757681 AATTCGCGTTGCGATAGTCTAATACGCTTTGCGATTTTCTCGTTGCGATAGTCAAATACCCGTTG
1 AATTCGCGTTGCGATACTCAAATACGCATTGCGATTTTCTCGTTGCGATAGTCAAATACCCGTTG
1757746 CGATAATCA
66 CGATAATCA
* ** *
1757755 AATTCGCATTGCGATACTCAAATTTGCATTGCGATTTTCTCGTTGCGATAGTCAAATAGCCGTTG
1 AATTCGCGTTGCGATACTCAAATACGCATTGCGATTTTCTCGTTGCGATAGTCAAATACCCGTTG
*
1757820 CGATAGTCA
66 CGATAATCA
1757829 AATTCGCGTTGCGAT
1 AATTCGCGTTGCGAT
1757844 TTTTGCGTTG
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 80 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (74 bp):
AATTCGCGTTGCGATACTCAAATACGCATTGCGATTTTCTCGTTGCGATAGTCAAATACCCGTTG
CGATAATCA
Found at i:1758028 original size:50 final size:50
Alignment explanation
Indices: 1757953--1758058 Score: 203
Period size: 50 Copynumber: 2.1 Consensus size: 50
1757943 CGTTGCGATA
*
1757953 TTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCATAGCAATG
1 TTCAAATGAATGTGTAATAAATGATAACAACTGAACATATCATAGCAATG
1758003 TTCAAATGAATGTGTAATAAATGATAACAACTGAACATATCATAGCAATG
1 TTCAAATGAATGTGTAATAAATGATAACAACTGAACATATCATAGCAATG
1758053 TTCAAA
1 TTCAAA
1758059 CTCAAGTTAC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (50 bp):
TTCAAATGAATGTGTAATAAATGATAACAACTGAACATATCATAGCAATG
Found at i:1758037 original size:25 final size:25
Alignment explanation
Indices: 1757959--1758037 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
1757949 GATATTCAAA
*
1757959 TGAATGTGTAATAAGTGATAACAAC
1 TGAATGTGTAATAAATGATAACAAC
** * * * *
1757984 TGAACATATCATAGCAATG-T-TCAAA
1 TGAATGTGTAATA--AATGATAACAAC
1758009 TGAATGTGTAATAAATGATAACAAC
1 TGAATGTGTAATAAATGATAACAAC
1758034 TGAA
1 TGAA
1758038 CATATCATAG
Statistics
Matches: 37, Mismatches: 13, Indels: 8
0.64 0.22 0.14
Matches are distributed among these distances:
23 4 0.11
24 1 0.03
25 28 0.76
26 1 0.03
27 3 0.08
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.28
Consensus pattern (25 bp):
TGAATGTGTAATAAATGATAACAAC
Found at i:1760399 original size:14 final size:14
Alignment explanation
Indices: 1760380--1760406 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1760370 TCCCGTGGCA
1760380 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
1760394 TTTTCTTCGGGGA
1 TTTTCTTCGGGGA
1760407 TTTCTTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.19, G:0.30, T:0.44
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:1760670 original size:24 final size:24
Alignment explanation
Indices: 1760619--1760673 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
1760609 AAAATCCGAG
**
1760619 TATTGACCAAGATCAAAGTCTGGG
1 TATTGACCAAGATCAAAGTCTGAA
* *
1760643 TATTGACCAAGATCAAATTTTGAA
1 TATTGACCAAGATCAAAGTCTGAA
1760667 TATTGAC
1 TATTGAC
1760674 TAGTACTCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (24 bp):
TATTGACCAAGATCAAAGTCTGAA
Found at i:1761506 original size:20 final size:20
Alignment explanation
Indices: 1761481--1761586 Score: 149
Period size: 20 Copynumber: 5.3 Consensus size: 20
1761471 AAATTCAGTG
1761481 TTGCGACAGTCAGAATCGCA
1 TTGCGACAGTCAGAATCGCA
*
1761501 TTGCGACAGTCAGAATCGCG
1 TTGCGACAGTCAGAATCGCA
* *
1761521 TTGCGACAGTCAGAATAGCG
1 TTGCGACAGTCAGAATCGCA
* *
1761541 TTGCGATAGTCAGAATTGCA
1 TTGCGACAGTCAGAATCGCA
* *
1761561 TTGCGATAGTCATAATCGCA
1 TTGCGACAGTCAGAATCGCA
1761581 TTGCGA
1 TTGCGA
1761587 TTTACATATT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 79 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (20 bp):
TTGCGACAGTCAGAATCGCA
Found at i:1761587 original size:20 final size:20
Alignment explanation
Indices: 1761481--1761631 Score: 144
Period size: 20 Copynumber: 7.5 Consensus size: 20
1761471 AAATTCAGTG
*
1761481 TTGCGACAGTCAGAATCGCA
1 TTGCGATAGTCAGAATCGCA
* *
1761501 TTGCGACAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCA
* * *
1761521 TTGCGACAGTCAGAATAGCG
1 TTGCGATAGTCAGAATCGCA
*
1761541 TTGCGATAGTCAGAATTGCA
1 TTGCGATAGTCAGAATCGCA
*
1761561 TTGCGATAGTCATAATCGCA
1 TTGCGATAGTCAGAATCGCA
* * *
1761581 TTGCGAT-TTACATATTCGCA
1 TTGCGATAGT-CAGAATCGCA
* * *
1761601 TTGCGAT-TTACATATTCGCA
1 TTGCGATAGT-CAGAATCGCA
1761621 TTGCGATAGTC
1 TTGCGATAGTC
1761632 GGAAAATCGT
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
19 1 0.01
20 117 0.98
21 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCA
Found at i:1763480 original size:119 final size:119
Alignment explanation
Indices: 1763304--1763547 Score: 470
Period size: 119 Copynumber: 2.1 Consensus size: 119
1763294 ATGTCATTTG
1763304 ACATTTTTTAACGGATATTACCGTATAAGTACCTAAAAATGTGATGGAGAAAATATTAAAATCCT
1 ACATTTTTTAACGGATATTACCGTATAAGTACCTAAAAATGTGATGGAGAAAATATTAAAATCCT
*
1763369 ATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATATTTTAA
66 ATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATAATTTAA
*
1763423 ACATTTTTTAACGGATATTACCGTATAGGTACCTAAAAATGTGATGGAGAAAATATTAAAATCCT
1 ACATTTTTTAACGGATATTACCGTATAAGTACCTAAAAATGTGATGGAGAAAATATTAAAATCCT
1763488 ATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATAATTTAA
66 ATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATAATTTAA
1763542 ACATTT
1 ACATTT
1763548 ATTTTTTCAT
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 123 1.00
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.36
Consensus pattern (119 bp):
ACATTTTTTAACGGATATTACCGTATAAGTACCTAAAAATGTGATGGAGAAAATATTAAAATCCT
ATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATAATTTAA
Found at i:1763551 original size:60 final size:59
Alignment explanation
Indices: 1763368--1763553 Score: 152
Period size: 60 Copynumber: 3.1 Consensus size: 59
1763358 ATTAAAATCC
*
1763368 TATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATATTTTAAACA-
1 TATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATAATTTAAACAT
* * * ** * * **
1763426 T-TTTTTAACG-GATATTACCGTATAGGTACCTAAAAATGTGA-TGGAGA-A-AATATTAAA-AT
1 TATTTTTAACGAAAAATT--C-TTTAAATACCT-AAAGT-TAACTTAAGATATAAT-TTAAACAT
1763485 CCTATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATAATTTAAACATT
1 --TATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATAATTTAAACA-T
1763547 TATTTTT
1 TATTTTT
1763554 TCATTAAATT
Statistics
Matches: 93, Mismatches: 19, Indels: 30
0.65 0.13 0.21
Matches are distributed among these distances:
56 4 0.04
57 9 0.10
58 7 0.08
59 22 0.24
60 29 0.31
61 8 0.09
62 10 0.11
63 4 0.04
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (59 bp):
TATTTTTAACGAAAAATTCTTTAAATACCTAAAGTTAACTTAAGATATAATTTAAACAT
Found at i:1764906 original size:100 final size:101
Alignment explanation
Indices: 1764802--1765001 Score: 278
Period size: 101 Copynumber: 2.0 Consensus size: 101
1764792 TTAGATCGTG
* * * * *
1764802 CCTTTATGAGTATATCTATAAATTGAGTTATAAGGTTGAAAT-GGATTTATTATTAAAACCTATT
1 CCTTTATGAGTATATCTATAAATTAAGATATAAGATTGAAATCGAATTTATAATTAAAACCTATT
1764866 ATAAATTCGATTGAT-AAGGTCACGTTTTAGGTTACA
66 ATAAATTCGATTG-TGAAGGTCACGTTTTAGGTTACA
* *** *
1764902 CCTTTATGAGTATATTTATCGGTTAAGATATAAGATTGTAATCGAATTTATAATTAAAACCTATT
1 CCTTTATGAGTATATCTATAAATTAAGATATAAGATTGAAATCGAATTTATAATTAAAACCTATT
*
1764967 ATAAATTCGGTTGTGAAGGTCACGTTTTAGGTTAC
66 ATAAATTCGATTGTGAAGGTCACGTTTTAGGTTAC
1765002 GTCCTTTTAG
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
100 35 0.40
101 52 0.60
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.40
Consensus pattern (101 bp):
CCTTTATGAGTATATCTATAAATTAAGATATAAGATTGAAATCGAATTTATAATTAAAACCTATT
ATAAATTCGATTGTGAAGGTCACGTTTTAGGTTACA
Found at i:1765029 original size:101 final size:98
Alignment explanation
Indices: 1764846--1765123 Score: 258
Period size: 101 Copynumber: 2.8 Consensus size: 98
1764836 GTTGAAATGG
* *
1764846 ATTTATTATTAAAACCTATTATAAATTCGATTGATAAGGTCACGTTTTAGGTTACACCTTTATGA
1 ATTTATAATTAAAACCTATTATAAATTCGGTTG-TAAGGTCACGTTTTAGGTTACACCTTTATGA
* **
1764911 GTATATTTATCGGTTAAGATATAAGATTGT-AATCGA
65 GTATATTTACCAATTAAGATATAAGATT-TCAA-C-A
*
1764947 ATTTATAATTAAAACCTATTATAAATTCGGTTGTGAAGGTCACGTTTTAGGTTACGTCCTTT-T-
1 ATTTATAATTAAAACCTATTATAAATTCGGTTGT-AAGGTCACGTTTTAGGTTAC-ACCTTTATG
* * * * * *
1765010 AGTTTTTTTAACCAATTAAGTTATTAGGTTTCAACC
64 AGTATATTT-ACCAATTAAGATATAAGATTTCAACA
* * * *** *
1765046 ATTTATATTATGAAAACCTATTA-AAAATCTGGTTGCAAAGGTCACGTTTTAGGTTGTTCCTATA
1 ATTTATA--ATTAAAACCTATTATAAATTC-GGTTG-TAAGGTCACGTTTTAGGTTACACCTTTA
1765110 TGAGTATATTTACC
62 TGAGTATATTTACC
1765124 GGTTATAAGG
Statistics
Matches: 147, Mismatches: 20, Indels: 20
0.79 0.11 0.11
Matches are distributed among these distances:
99 7 0.05
100 20 0.14
101 108 0.73
102 12 0.08
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (98 bp):
ATTTATAATTAAAACCTATTATAAATTCGGTTGTAAGGTCACGTTTTAGGTTACACCTTTATGAG
TATATTTACCAATTAAGATATAAGATTTCAACA
Found at i:1765238 original size:21 final size:21
Alignment explanation
Indices: 1765212--1765251 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1765202 TTATAAAAAC
1765212 ATATTACAA-ATTCGGTTGCGA
1 ATATTA-AATATTCGGTTGCGA
*
1765233 ATATTAAATATTTGGTTGC
1 ATATTAAATATTCGGTTGC
1765252 ACCCTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (21 bp):
ATATTAAATATTCGGTTGCGA
Found at i:1766473 original size:20 final size:21
Alignment explanation
Indices: 1766450--1766488 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
1766440 AAACTTTTAT
*
1766450 AAGGAATGAATA-TTTTTTCA
1 AAGGAATCAATACTTTTTTCA
*
1766470 AAGGGATCAATACTTTTTT
1 AAGGAATCAATACTTTTTT
1766489 TTTCAAAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (21 bp):
AAGGAATCAATACTTTTTTCA
Found at i:1767363 original size:2 final size:2
Alignment explanation
Indices: 1767356--1767433 Score: 156
Period size: 2 Copynumber: 39.0 Consensus size: 2
1767346 TTGATCACTA
1767356 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1767398 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1767434 GATGTTATGT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 76 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1767737 original size:21 final size:20
Alignment explanation
Indices: 1767706--1767767 Score: 97
Period size: 20 Copynumber: 3.0 Consensus size: 20
1767696 ACTGAAAACA
*
1767706 ATTTATGGAAAATGAATTAC
1 ATTTCTGGAAAATGAATTAC
*
1767726 ATTTCCTGGAAAATGAATTAT
1 ATTT-CTGGAAAATGAATTAC
1767747 ATTTCTGGAAAATGAATTAC
1 ATTTCTGGAAAATGAATTAC
1767767 A
1 A
1767768 AAATTATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 20 0.53
21 18 0.47
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (20 bp):
ATTTCTGGAAAATGAATTAC
Found at i:1774247 original size:22 final size:23
Alignment explanation
Indices: 1774215--1774263 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
1774205 CCATATTATG
*
1774215 CAAATATTTACTA-AACTAACACC
1 CAAATATTTAC-ACAAATAACACC
1774238 CAAAT-TTTACACAAATAACACC
1 CAAATATTTACACAAATAACACC
1774260 CAAA
1 CAAA
1774264 CATAAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 1 0.04
22 18 0.75
23 5 0.21
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (23 bp):
CAAATATTTACACAAATAACACC
Found at i:1775124 original size:47 final size:47
Alignment explanation
Indices: 1775071--1775166 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
1775061 CATGTAGCTT
* *
1775071 TTATAGAAATACAGATCCTCCACTAATCCTTAACCCGTTGAGTATAC
1 TTATAGAAATACAGATCATCCACTAATCCTTAACCCATTGAGTATAC
1775118 TTATAGAAATACAGATCATCCACTAATCCTTAACCCATTGAGTATAC
1 TTATAGAAATACAGATCATCCACTAATCCTTAACCCATTGAGTATAC
1775165 TT
1 TT
1775167 TCTTATCAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.31
Consensus pattern (47 bp):
TTATAGAAATACAGATCATCCACTAATCCTTAACCCATTGAGTATAC
Found at i:1781113 original size:24 final size:24
Alignment explanation
Indices: 1781081--1781182 Score: 71
Period size: 24 Copynumber: 4.2 Consensus size: 24
1781071 GATATCAAAA
*
1781081 ATCAAAACATAATTCAGATCAGAT
1 ATCAGAACATAATTCAGATCAGAT
* * * *
1781105 ATCGGAACATAATCCAGGTTAAGA-
1 ATCAGAACATAATTCA-GATCAGAT
* *
1781129 ATCAGAACAGATTTCAGATCAGAT
1 ATCAGAACATAATTCAGATCAGAT
* * * * * *
1781153 GTCAAAACAGAATTTAAATCAGAA
1 ATCAGAACATAATTCAGATCAGAT
1781177 ATCAGA
1 ATCAGA
1781183 TAAAATATTC
Statistics
Matches: 57, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
23 5 0.09
24 47 0.82
25 5 0.09
ACGTcount: A:0.47, C:0.16, G:0.15, T:0.23
Consensus pattern (24 bp):
ATCAGAACATAATTCAGATCAGAT
Found at i:1785755 original size:19 final size:19
Alignment explanation
Indices: 1785731--1785773 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
1785721 TTTCTTGCAA
1785731 AAAAATGAAATTGAAGGGG
1 AAAAATGAAATTGAAGGGG
1785750 AAAAATGAAATTGAAGGGG
1 AAAAATGAAATTGAAGGGG
1785769 AAAAA
1 AAAAA
1785774 AGGACCTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.28, T:0.14
Consensus pattern (19 bp):
AAAAATGAAATTGAAGGGG
Found at i:1786633 original size:19 final size:19
Alignment explanation
Indices: 1786606--1786666 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
1786596 AAAAATCGAT
1786606 AAACCGAACCGAACTGAAA
1 AAACCGAACCGAACTGAAA
* * *
1786625 AACCCGAACCG--TTAAAA
1 AAACCGAACCGAACTGAAA
*
1786642 AAACCGAACCGAACCGAAA
1 AAACCGAACCGAACTGAAA
1786661 AAACCG
1 AAACCG
1786667 GTTTCGTTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 14 0.42
19 19 0.58
ACGTcount: A:0.51, C:0.30, G:0.15, T:0.05
Consensus pattern (19 bp):
AAACCGAACCGAACTGAAA
Found at i:1788659 original size:19 final size:19
Alignment explanation
Indices: 1788637--1788701 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
1788627 CTCTGAACTT
*
1788637 TGATATCTGATATGATCTC
1 TGATATCTGTTATGATCTC
* *
1788656 TGATTTCAGTTATGATCTC
1 TGATATCTGTTATGATCTC
* *
1788675 TGATCTCTGTTATGATTTC
1 TGATATCTGTTATGATCTC
1788694 TGATATCT
1 TGATATCT
1788702 CTATTTACTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 39 1.00
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48
Consensus pattern (19 bp):
TGATATCTGTTATGATCTC
Found at i:1790314 original size:76 final size:76
Alignment explanation
Indices: 1790183--1790339 Score: 201
Period size: 76 Copynumber: 2.1 Consensus size: 76
1790173 TTTGAAACAA
* * * * *
1790183 ACTTAGAGATGGTTTTCATTATCAACCTAACACTTATGCACAGTGAAATGTTCGACCT-GTCTAA
1 ACTTAGAGATGGTTTTCATGATCAACCTAACACTTATGCAAAGCGAAATGGTCGA-CTAGTCCAA
*
1790247 GCACACATTCAC
65 GAACACATTCAC
* * *
1790259 ACTTAGAGATGGTTGTT-ATGATCAACCTCACACTTATGGAAAGCGATATGGTCGACTAGTCCAA
1 ACTTAGAGATGGTT-TTCATGATCAACCTAACACTTATGCAAAGCGAAATGGTCGACTAGTCCAA
1790323 GAACACATTCAC
65 GAACACATTCAC
1790335 ACTTA
1 ACTTA
1790340 TATATACATT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
75 2 0.03
76 66 0.94
77 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (76 bp):
ACTTAGAGATGGTTTTCATGATCAACCTAACACTTATGCAAAGCGAAATGGTCGACTAGTCCAAG
AACACATTCAC
Found at i:1790589 original size:31 final size:31
Alignment explanation
Indices: 1790551--1790653 Score: 106
Period size: 31 Copynumber: 3.3 Consensus size: 31
1790541 CTCATATCCA
1790551 ACATACTTTAATTCTCATGTTTACAAATATC
1 ACATACTTTAATTCTCATGTTTACAAATATC
* *
1790582 ACATACTTTCATTACATCATAG-CT-C--ATATCC
1 ACATACTTTAATT-C-TCAT-GTTTACAAATAT-C
1790613 AACATACTTTAATTCTCATGTTTACAAATATC
1 -ACATACTTTAATTCTCATGTTTACAAATATC
*
1790645 ACTTACTTT
1 ACATACTTT
1790654 CAATACATCA
Statistics
Matches: 58, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
29 1 0.02
30 9 0.16
31 23 0.40
32 15 0.26
33 9 0.16
34 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.03, T:0.41
Consensus pattern (31 bp):
ACATACTTTAATTCTCATGTTTACAAATATC
Found at i:1790621 original size:32 final size:32
Alignment explanation
Indices: 1790519--1790622 Score: 119
Period size: 32 Copynumber: 3.3 Consensus size: 32
1790509 AACAATGATC
1790519 ACATACTTTCATTACATCATAGCTCATATCCA
1 ACATACTTTCATTACATCATAGCTCATATCCA
* *
1790551 ACATACTTTAATT-C-TCAT-GTTTACAAATAT-C-
1 ACATACTTTCATTACATCATAG-CT-C--ATATCCA
1790582 ACATACTTTCATTACATCATAGCTCATATCCA
1 ACATACTTTCATTACATCATAGCTCATATCCA
1790614 ACATACTTT
1 ACATACTTT
1790623 AATTCTCATG
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
29 1 0.02
30 9 0.15
31 15 0.25
32 24 0.41
33 9 0.15
34 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.38
Consensus pattern (32 bp):
ACATACTTTCATTACATCATAGCTCATATCCA
Found at i:1790672 original size:63 final size:63
Alignment explanation
Indices: 1790516--1790663 Score: 278
Period size: 63 Copynumber: 2.3 Consensus size: 63
1790506 ACTAACAATG
1790516 ATCACATACTTTCATTACATCATAGCTCATATCCAACATACTTTAATTCTCATGTTTACAAAT
1 ATCACATACTTTCATTACATCATAGCTCATATCCAACATACTTTAATTCTCATGTTTACAAAT
1790579 ATCACATACTTTCATTACATCATAGCTCATATCCAACATACTTTAATTCTCATGTTTACAAAT
1 ATCACATACTTTCATTACATCATAGCTCATATCCAACATACTTTAATTCTCATGTTTACAAAT
* *
1790642 ATCACTTACTTTCAATACATCA
1 ATCACATACTTTCATTACATCA
1790664 CAAATCATAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 83 1.00
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (63 bp):
ATCACATACTTTCATTACATCATAGCTCATATCCAACATACTTTAATTCTCATGTTTACAAAT
Found at i:1794031 original size:17 final size:17
Alignment explanation
Indices: 1794011--1794044 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1794001 ATTCTTAGTT
1794011 TCTCTATTTCTGTAGCA
1 TCTCTATTTCTGTAGCA
*
1794028 TCTCTATTTTTGTAGCA
1 TCTCTATTTCTGTAGCA
1794045 ATACACTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.50
Consensus pattern (17 bp):
TCTCTATTTCTGTAGCA
Found at i:1795092 original size:4 final size:4
Alignment explanation
Indices: 1795085--1795205 Score: 71
Period size: 4 Copynumber: 30.2 Consensus size: 4
1795075 ACACACACAC
* * * * * * * * *
1795085 ACAT ACAT GCAT GCAT GCAT TCAT ACAG ACAT ACAC ACAC ACAC ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * * * *
1795133 ACAC ACAC ACAC ACAT GCAT GCAT GCAT ATAG ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
1795181 ATAT ACAG ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
1795206 TAGACACATA
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 100 1.00
ACGTcount: A:0.45, C:0.29, G:0.07, T:0.19
Consensus pattern (4 bp):
ACAT
Found at i:1795093 original size:38 final size:38
Alignment explanation
Indices: 1795042--1795814 Score: 186
Period size: 38 Copynumber: 20.3 Consensus size: 38
1795032 CGCACGCACG
1795042 CACACACACACATGCATGCATACAGACATACACACACA
1 CACACACACACATGCATGCATACAGACATACACACACA
1795080 CACACACATACATGCATGCATGCATTCATACAGACATACACACACA
1 CACACAC--ACA--CATGCATG----CATACAGACATACACACACA
** * * * *
1795126 CACACACACACA--CACACACACATG-CATGCATGCATATA
1 CACACACACACATGCATGCATACA-GACATACA--CACACA
* * * * ** * *
1795164 GACATACATACATACATATATACAGACATACATACATA
1 CACACACACACATGCATGCATACAGACATACACACACA
* * * * * * * * *
1795202 CATATAGACACATACACGCAGACACACATACAGACAGA
1 CACACACACACATGCATGCATACAGACATACACACACA
* *
1795240 CACCCACATACA--CA--CATAC--ACATACACACACA
1 CACACACACACATGCATGCATACAGACATACACACACA
* ** ** * **
1795272 CACACGGACACACATACACACGGACACACATACACACGGA
1 CACAC--ACACACATGCATGCATACAGACATACACACACA
** * * ** * * *
1795312 CACACGGACACACGGACACACACACACACACACACACA
1 CACACACACACATGCATGCATACAGACATACACACACA
*
1795350 CACACACACATGCATGCATACATACAGACATACACACACA
1 CACACACACA--CATGCATGCATACAGACATACACACACA
** ** * *
1795390 CACACACACACACACACACATACATGCATGCATGCATGCATACA
1 CACACACACACATGCATGCATACA-G-A--CATACA--CACACA
* * * * * *
1795434 GACATACACACATACA--CACACACACACACACACACA
1 CACACACACACATGCATGCATACAGACATACACACACA
*
1795470 CACACACACATGCATGCATGCATACAGACATACATACATACA
1 CACACACACA--CATGCATGCATACAGACATAC--ACACACA
* * * * * * * *
1795512 TACATATATACA-GACATACATACATACATATAGACACA
1 CACACACACACATG-CATGCATACAGACATACACACACA
* * * *
1795550 TACACGCAGACA--CA--CATACAGACAGACAC-C-CA
1 CACACACACACATGCATGCATACAGACATACACACACA
* * * * *
1795582 TATAGACAGACA--CA--CATACACACATACACACACA
1 CACACACACACATGCATGCATACAGACATACACACACA
* ** * **
1795616 CACACGGACACAC-GGACACACATACACACGGACACACGGACA
1 CACAC--ACACACATG-CATGCATACAGACATACACAC--ACA
** * * * *
1795658 CACGGACACACACA--CACACACACACACAAAGACACACA
1 CAC--ACACACACATGCATGCATACAGACATACACACACA
* * *
1795696 CACACACA-A-A-G-A--CACACACACACACACACACA
1 CACACACACACATGCATGCATACAGACATACACACACA
**
1795728 CACACACATGCATGCATGCATACAGACATACACACACA
1 CACACACACACATGCATGCATACAGACATACACACACA
* * * *
1795766 CACACACACACATGCATGCATGCATACAGACATACACA
1 CACACACACACATGCATGCATACAGACATACACACACA
1795804 CACACACACAC
1 CACACACACAC
1795815 GCACGCACGC
Statistics
Matches: 555, Mismatches: 122, Indels: 116
0.70 0.15 0.15
Matches are distributed among these distances:
32 67 0.12
33 2 0.00
34 28 0.05
35 2 0.00
36 40 0.07
37 1 0.00
38 193 0.35
39 3 0.01
40 125 0.23
42 44 0.08
44 23 0.04
46 27 0.05
ACGTcount: A:0.45, C:0.36, G:0.09, T:0.10
Consensus pattern (38 bp):
CACACACACACATGCATGCATACAGACATACACACACA
Found at i:1795124 original size:2 final size:2
Alignment explanation
Indices: 1795117--1795147 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1795107 ATACAGACAT
1795117 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1795148 TGCATGCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:1795257 original size:8 final size:8
Alignment explanation
Indices: 1795106--1796291 Score: 415
Period size: 8 Copynumber: 147.0 Consensus size: 8
1795096 TGCATGCATT
*
1795106 CATACAGA
1 CATACACA
1795114 CATACACA
1 CATACACA
*
1795122 CACACACA
1 CATACACA
*
1795130 CACACACA
1 CATACACA
*
1795138 CACACACA
1 CATACACA
*
1795146 CATGCATGCA
1 CATACA--CA
* *
1795156 TGCATATAGA
1 --CATACACA
*
1795166 CATACATA
1 CATACACA
*
1795174 CATACATA
1 CATACACA
* *
1795182 TATACAGA
1 CATACACA
*
1795190 CATACATA
1 CATACACA
1795198 CAT--ACA
1 CATACACA
* *
1795204 TATAGACA
1 CATACACA
*
1795212 CATACACG
1 CATACACA
*
1795220 CAGACACA
1 CATACACA
*
1795228 CATACAGA
1 CATACACA
*
1795236 CAGACACCCA
1 CATACA--CA
1795246 CATACACA
1 CATACACA
1795254 CAT--ACA
1 CATACACA
1795260 CATACACA
1 CATACACA
*
1795268 CACACACA
1 CATACACA
**
1795276 CGGACACA
1 CATACACA
1795284 CATACACA
1 CATACACA
**
1795292 CGGACACA
1 CATACACA
1795300 CATACACA
1 CATACACA
**
1795308 CGGACACA
1 CATACACA
**
1795316 CGGACACA
1 CATACACA
**
1795324 CGGACACA
1 CATACACA
1795332 C--ACACA
1 CATACACA
*
1795338 CACACACA
1 CATACACA
*
1795346 CACACACA
1 CATACACA
* **
1795354 CACACATG
1 CATACACA
* *
1795362 CATGCATA
1 CATACACA
*
1795370 CATACAGA
1 CATACACA
1795378 CATACACA
1 CATACACA
1795386 C--ACACA
1 CATACACA
*
1795392 CACACACA
1 CATACACA
*
1795400 CACACACA
1 CATACACA
1795408 CATACATGCA
1 CATACA--CA
* **
1795418 TGCATGCATG
1 --CATACACA
*
1795428 CATACAGA
1 CATACACA
1795436 CATACACA
1 CATACACA
1795444 CATACACA
1 CATACACA
1795452 C--ACACA
1 CATACACA
*
1795458 CACACACA
1 CATACACA
*
1795466 CACACACA
1 CATACACA
* **
1795474 CACACATG
1 CATACACA
* **
1795482 CATGCATG
1 CATACACA
*
1795490 CATACAGA
1 CATACACA
*
1795498 CATACATA
1 CATACACA
*
1795506 CATACATA
1 CATACACA
* *
1795514 CATATATA
1 CATACACA
* *
1795522 CAGACATA
1 CATACACA
1795530 CATACATACA
1 CATAC--ACA
* *
1795540 TATAGACA
1 CATACACA
*
1795548 CATACACG
1 CATACACA
*
1795556 CAGACACA
1 CATACACA
*
1795564 CATACAGA
1 CATACACA
* *
1795572 CAGACACC
1 CATACACA
* *
1795580 CATATAGA
1 CATACACA
*
1795588 CAGACACA
1 CATACACA
1795596 CATACACA
1 CATACACA
1795604 CATACACA
1 CATACACA
*
1795612 CACACACA
1 CATACACA
**
1795620 CGGACACA
1 CATACACA
**
1795628 CGGACACA
1 CATACACA
1795636 CATACACA
1 CATACACA
**
1795644 CGGACACA
1 CATACACA
**
1795652 CGGACACA
1 CATACACA
*
1795660 CGGACACACA
1 C--ATACACA
*
1795670 CACACACA
1 CATACACA
*
1795678 CACACACA
1 CATACACA
* *
1795686 AAGACACA
1 CATACACA
*
1795694 CACACACA
1 CATACACA
* *
1795702 CAAAGACA
1 CATACACA
*
1795710 CACACACA
1 CATACACA
*
1795718 CACACACA
1 CATACACA
*
1795726 CACACACA
1 CATACACA
*
1795734 CATGCATGCA
1 CATACA--CA
*
1795744 TGCATACAGA
1 --CATACACA
1795754 CATACACA
1 CATACACA
*
1795762 CACACACA
1 CATACACA
*
1795770 CACACACA
1 CATACACA
* **
1795778 TGCATGCATG
1 --CATACACA
*
1795788 CATACAGA
1 CATACACA
1795796 CATACACA
1 CATACACA
*
1795804 CACACACA
1 CATACACA
** *
1795812 CACGCACG
1 CATACACA
** *
1795820 CACGCACG
1 CATACACA
** *
1795828 CAGGCACG
1 CATACACA
** *
1795836 CACGCACG
1 CATACACA
** *
1795844 CACGCACG
1 CATACACA
** *
1795852 CACGCACG
1 CATACACA
** *
1795860 CACGCACG
1 CATACACA
** **
1795868 CACGCATG
1 CATACACA
* *
1795876 CATGCAGA
1 CATACACA
*
1795884 CATACATA
1 CATACACA
*
1795892 CATACAGA
1 CATACACA
*
1795900 CATACATA
1 CATACACA
1795908 CATACAGACA
1 CATAC--ACA
*
1795918 CATACACG
1 CATACACA
*
1795926 CAGACACA
1 CATACACA
* *
1795934 TATACAGA
1 CATACACA
* *
1795942 CAGACACC
1 CATACACA
* *
1795950 CATATAGA
1 CATACACA
*
1795958 CAGACACA
1 CATACACA
1795966 CATACACA
1 CATACACA
1795974 CATACACA
1 CATACACA
1795982 CATACACA
1 CATACACA
1795990 C--ACACA
1 CATACACA
**
1795996 CGGACACA
1 CATACACA
1796004 CATACACA
1 CATACACA
**
1796012 CGGACACA
1 CATACACA
1796020 CATACACA
1 CATACACA
** *
1796028 CGGACAAA
1 CATACACA
**
1796036 CGGACACA
1 CATACACA
**
1796044 CGGACACA
1 CATACACA
**
1796052 CGGACACA
1 CATACACA
*
1796060 CACACACA
1 CATACACA
*
1796068 CACACACA
1 CATACACA
* * *
1796076 CACAAAGA
1 CATACACA
*
1796084 CACACACA
1 CATACACA
*
1796092 CACACACA
1 CATACACA
* *
1796100 AAGACACA
1 CATACACA
*
1796108 CACACACA
1 CATACACA
*
1796116 CACACACA
1 CATACACA
* *
1796124 CACATACA
1 CATACACA
*
1796132 CGTACACA
1 CATACACA
**
1796140 CGGACACA
1 CATACACA
**
1796148 CGGACACA
1 CATACACA
*
1796156 CGGT-CACA
1 C-ATACACA
*
1796164 CGGT-CACA
1 C-ATACACA
1796172 -AGTACACA
1 CA-TACACA
1796180 CAGT-CACA
1 CA-TACACA
**
1796188 CGGACACA
1 CATACACA
**
1796196 CGGACACA
1 CATACACA
1796204 CATACACA
1 CATACACA
1796212 CATACACA
1 CATACACA
*
1796220 CAGACACA
1 CATACACA
1796228 CATACACA
1 CATACACA
*
1796236 CAGACACA
1 CATACACA
1796244 CATACACA
1 CATACACA
1796252 CATACACA
1 CATACACA
1796260 CATACACA
1 CATACACA
* *
1796268 CAGACAGA
1 CATACACA
*
1796276 CACACACA
1 CATACACA
*
1796284 CACACACA
1 CATACACA
1796292 TAAAAATCAA
Statistics
Matches: 952, Mismatches: 187, Indels: 78
0.78 0.15 0.06
Matches are distributed among these distances:
6 34 0.04
7 1 0.00
8 863 0.91
9 4 0.00
10 36 0.04
12 14 0.01
ACGTcount: A:0.45, C:0.37, G:0.10, T:0.09
Consensus pattern (8 bp):
CATACACA
Found at i:1795260 original size:18 final size:18
Alignment explanation
Indices: 1795223--1796293 Score: 252
Period size: 18 Copynumber: 56.5 Consensus size: 18
1795213 ATACACGCAG
* *
1795223 ACACACATACAGACAGAC
1 ACACACATACACACACAC
* *
1795241 ACCCACATACACACATAC
1 ACACACATACACACACAC
* *
1795259 ACATACACACACACACAC
1 ACACACATACACACACAC
**
1795277 GGACACACAT--ACACACGG
1 --ACACACATACACACACAC
1795295 ACACACATACACACGGACAC
1 ACACACATACACAC--ACAC
***
1795315 ACGGACACACGGACACACAC
1 AC--ACACATACACACACAC
*
1795335 ACACACACACACACACAC
1 ACACACATACACACACAC
* * *
1795353 ACACACATGCATGCATACAT
1 ACACACATACA--CACACAC
*
1795373 ACAGACATACACACACAC
1 ACACACATACACACACAC
*
1795391 ACACACACACACACACAC
1 ACACACATACACACACAC
* * ** *
1795409 ATACATGCATGCATGCATGCAT
1 ACACA--CATACA--CACACAC
* *
1795431 ACAGACATACACACATAC
1 ACACACATACACACACAC
*
1795449 ACACACACACACACACAC
1 ACACACATACACACACAC
* ** *
1795467 ACACACACACACATGCAT
1 ACACACATACACACACAC
* ** * *
1795485 GCATGCATACAGACATACAT
1 ACACACATAC--ACACACAC
* * * *
1795505 ACATACATACATATATACAG
1 ACACACATAC--ACACACAC
* * * *
1795525 ACATACATACATACATAT
1 ACACACATACACACACAC
* * *
1795543 AGACACAT--ACACGCAG
1 ACACACATACACACACAC
* *
1795559 ACACACATACAGACAGAC
1 ACACACATACACACACAC
* * *
1795577 ACCCATATAGACAGACACACAT
1 ACACACAT--AC--ACACACAC
1795599 ACACACATACACACACAC
1 ACACACATACACACACAC
* *
1795617 ACACGGACACACGGACACACAT
1 ACAC--ACATAC--ACACACAC
**
1795639 ACACACGGACACACGGACAC
1 ACACACATACACAC--ACAC
*
1795659 ACGGACACACACACACACAC
1 AC--ACACATACACACACAC
* *
1795679 ACACACAAAGACACACAC
1 ACACACATACACACACAC
* *
1795697 ACACACAAAGACACACAC
1 ACACACATACACACACAC
*
1795715 ACACACACACACACACAC
1 ACACACATACACACACAC
** * * *
1795733 ACATGCATGCATGCATACAG
1 ACACACATACA--CACACAC
* *
1795753 ACATACACACACACACAC
1 ACACACATACACACACAC
* ** *
1795771 ACACACATGCATGCATGCAT
1 ACACACATACA--CACACAC
*
1795791 ACAGACATACACACACAC
1 ACACACATACACACACAC
** * *
1795809 ACACACGCACGCACGCACGC
1 ACACA--CATACACACACAC
* ** * *
1795829 AGGCACGCACGCACGCACGC
1 A--CACACATACACACACAC
* ** * *
1795849 ACGCACGCACGCACGCAC
1 ACACACATACACACACAC
* * * * *
1795867 GCACGCATGCATGCAGACAT
1 ACACACATACA--CACACAC
* * *
1795887 ACATACATACAGACATACAT
1 ACACACATAC--ACACACAC
* * *
1795907 ACATACAGACACATACACGC
1 ACACACATACAC--ACACAC
* * * *
1795927 AGACACATATACAGACAG
1 ACACACATACACACACAC
* * * *
1795945 ACACCCAT--ATAGACAG
1 ACACACATACACACACAC
*
1795961 ACACACATACACACATAC
1 ACACACATACACACACAC
* *
1795979 ACACATACACACACACAC
1 ACACACATACACACACAC
1795997 GGACACACATACACACGGACAC
1 --ACACACATACACAC--ACAC
* * * **
1796019 ACATACACACGGACAAACGG
1 ACACACATAC--ACACACAC
** **
1796039 ACACACGGACACACGGAC
1 ACACACATACACACACAC
*
1796057 ACACACACACACACACAC
1 ACACACATACACACACAC
* *
1796075 ACACAAAGACACACACAC
1 ACACACATACACACACAC
*
1796093 ACACACA-A-AGACACAC
1 ACACACATACACACACAC
*
1796109 ACACACACACACACACAC
1 ACACACATACACACACAC
* *
1796127 ATACACGTACACACGGACAC
1 ACACACATACACAC--ACAC
**** **
1796147 ACGGACACACGGTCACACGG
1 AC--ACACATACACACACAC
*
1796167 TCACA-AGTACACACAGTCAC
1 ACACACA-TACACACA--CAC
*** *
1796187 ACGGACACACGGACACACAT
1 AC--ACACATACACACACAC
1796207 ACACACATACACACAGACAC
1 ACACACATACACAC--ACAC
* * *
1796227 ACATACACACAGACACACAT
1 AC--ACACATACACACACAC
1796247 ACACACATACACACATACAC
1 ACACACATACACAC--ACAC
* *
1796267 ACAGACAGACACACACAC
1 ACACACATACACACACAC
1796285 ACACACATA
1 ACACACATA
1796294 AAAATCAAAT
Statistics
Matches: 759, Mismatches: 224, Indels: 140
0.68 0.20 0.12
Matches are distributed among these distances:
16 47 0.06
17 3 0.00
18 375 0.49
20 249 0.33
22 84 0.11
23 1 0.00
ACGTcount: A:0.45, C:0.37, G:0.10, T:0.08
Consensus pattern (18 bp):
ACACACATACACACACAC
Found at i:1795272 original size:4 final size:4
Alignment explanation
Indices: 1795209--1796291 Score: 314
Period size: 4 Copynumber: 270.8 Consensus size: 4
1795199 ATACATATAG
* * * * * * * * *
1795209 ACAC ATAC ACGC AGAC ACAC ATAC AGAC AGAC ACCC ACAT ACAC ACAT
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* ** * ** *
1795257 ACAC ATAC ACAC ACAC ACAC GGAC ACAC ATAC ACAC GGAC ACAC ATAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
** ** **
1795305 ACAC GGAC ACAC GGAC ACAC GGAC ACAC ACAC ACAC ACAC ACAC ACAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * * * *
1795353 ACAC ACAT GCAT GCAT ACAT ACAG ACAT ACAC ACAC ACAC ACAC ACAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* ** ** ** ** * * * *
1795401 ACAC ACAC ATAC ATGC ATGC ATGC ATGC ATAC AGAC ATAC ACAC ATAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * * * *
1795449 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAT GCAT GCAT GCAT ACAG
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * * * * * * * * * *
1795497 ACAT ACAT ACAT ACAT ACAT ATAT ACAG ACAT ACAT ACAT ACAT ATAG
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * * * * * * *
1795545 ACAC ATAC ACGC AGAC ACAC ATAC AGAC AGAC ACCC ATAT AGAC AGAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * ** ** *
1795593 ACAC ATAC ACAC ATAC ACAC ACAC ACAC GGAC ACAC GGAC ACAC ATAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
** ** ** * *
1795641 ACAC GGAC ACAC GGAC ACAC GGAC ACAC ACAC ACAC ACAC ACAC AAAG
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * *
1795689 ACAC ACAC ACAC ACAA AGAC ACAC ACAC ACAC ACAC ACAC ACAC ACAT
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * * * * ** **
1795737 GCAT GCAT GCAT ACAG ACAT ACAC ACAC ACAC ACAC ACAC ATGC ATGC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
** * * * * * * * **
1795785 ATGC ATAC AGAC ATAC ACAC ACAC ACAC ACGC ACGC ACGC ACGC AGGC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * * * * * * ** **
1795833 ACGC ACGC ACGC ACGC ACGC ACGC ACGC ACGC ACGC ACGC ATGC ATGC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * * * * * * * *
1795881 AGAC ATAC ATAC ATAC AGAC ATAC ATAC ATAC AGAC ACAT ACAC GCAG
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * * * * * * *
1795929 ACAC ATAT ACAG ACAG ACAC CCAT ATAG ACAG ACAC ACAT ACAC ACAT
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* ** * ** *
1795977 ACAC ACAT ACAC ACAC ACAC GGAC ACAC ATAC ACAC GGAC ACAC ATAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
** * ** ** **
1796025 ACAC GGAC AAAC GGAC ACAC GGAC ACAC GGAC ACAC ACAC ACAC ACAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * *
1796073 ACAC ACAA AGAC ACAC ACAC ACAC ACAA AGAC ACAC ACAC ACAC ACAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* ** ** ** *** ***
1796121 ACAC ACAT ACAC GTAC ACAC GGAC ACAC GGAC ACAC GGTC ACAC GGTC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* ** ** ** * *
1796169 ACA- AGTAC ACAC AGTC ACAC GGAC ACAC GGAC ACAC ATAC ACAC ATAC
1 ACAC A-CAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* * * * * *
1796217 ACAC AGAC ACAC ATAC ACAC AGAC ACAC ATAC ACAC ATAC ACAC ATAC
1 ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC ACAC
* *
1796265 ACAC AGAC AGAC ACAC ACAC ACAC ACA
1 ACAC ACAC ACAC ACAC ACAC ACAC ACA
1796292 TAAAAATCAA
Statistics
Matches: 818, Mismatches: 259, Indels: 4
0.76 0.24 0.00
Matches are distributed among these distances:
3 1 0.00
4 816 1.00
5 1 0.00
ACGTcount: A:0.45, C:0.37, G:0.11, T:0.08
Consensus pattern (4 bp):
ACAC
Found at i:1795505 original size:58 final size:58
Alignment explanation
Indices: 1795327--1795507 Score: 281
Period size: 58 Copynumber: 3.1 Consensus size: 58
1795317 GGACACACGG
* *
1795327 ACACACACACACACACACACACACACACACACATGCATGCATACATACAGACATACAC
1 ACACACACACACACACACACACACACACACACATGCATGCATGCATACAGACATACAT
* **
1795385 ACACACACACACACACACACACACATACATGCATGCATGCATGCATACAGACATACACACAT
1 ACACACACACACACACACACACACACACACACATGCATGCATGCATACAGACAT----ACAT
1795447 ACACACACACACACACACACACACACACACACATGCATGCATGCATACAGACATACAT
1 ACACACACACACACACACACACACACACACACATGCATGCATGCATACAGACATACAT
1795505 ACA
1 ACA
1795508 TACATACATA
Statistics
Matches: 111, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
58 57 0.51
62 54 0.49
ACGTcount: A:0.45, C:0.38, G:0.07, T:0.10
Consensus pattern (58 bp):
ACACACACACACACACACACACACACACACACATGCATGCATGCATACAGACATACAT
Found at i:1796796 original size:2 final size:2
Alignment explanation
Indices: 1796791--1796833 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
1796781 AAAACCATTA
1796791 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1796832 AT
1 AT
1796834 TAAAAGTAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1798552 original size:2 final size:2
Alignment explanation
Indices: 1798545--1798585 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1798535 AGATGGTATT
1798545 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1798586 TGCAATAGTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1801959 original size:16 final size:16
Alignment explanation
Indices: 1801938--1801973 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
1801928 ATGCAAAACA
*
1801938 ATATGTATTTGTATAT
1 ATATGTATATGTATAT
*
1801954 ATATGTGTATGTATAT
1 ATATGTATATGTATAT
1801970 ATAT
1 ATAT
1801974 ATAAAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (16 bp):
ATATGTATATGTATAT
Found at i:1807594 original size:41 final size:41
Alignment explanation
Indices: 1807539--1807650 Score: 125
Period size: 42 Copynumber: 2.7 Consensus size: 41
1807529 ATCCTACCCG
* * * *
1807539 AAGGTCTTATGGATGGCCCGAAGGACTTATCATCCTGCTCTA
1 AAGG-CTTACGGATGGCCCGAAGGACTTAGCATCATGCTCGA
* *
1807581 AAGGCTTACGGATGACCCGAAGGATTTAAGCATCATGCTCGA
1 AAGGCTTACGGATGGCCCGAAGGACTT-AGCATCATGCTCGA
* * *
1807623 AAGACTTACTGATGGTCCGAAGGACTTA
1 AAGGCTTACGGATGGCCCGAAGGACTTA
1807651 CAAATCGTGA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 21 0.36
42 37 0.64
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (41 bp):
AAGGCTTACGGATGGCCCGAAGGACTTAGCATCATGCTCGA
Found at i:1807709 original size:215 final size:216
Alignment explanation
Indices: 1807158--1808417 Score: 2012
Period size: 215 Copynumber: 5.9 Consensus size: 216
1807148 CTCTTTGGTG
* * * *
1807158 AAGGCTTACAAATTACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAAG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
*
1807223 ACTTATAAATTGTGAAATTTTGAAAATCGCCTTCTTCGTTTTCAAAAATTCCATCTTCTT-AAA-
66 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
* *
1807286 A-CA------TCATTTTCAAATTCACT-TGAAAACATCCTACTCGAAGGTTTTATGGATGGCCCG
131 ATCATTTTTTTCATTTTCAAATTCA-TGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCG
1807343 AAGGACTTATCATCTTGCTCTA
195 AAGGACTTATCATCTTGCTCTA
1807365 AAGGCTTACAGATGACCCGAAGGATTTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
1 AAGGCTTACAGATGACCCGAAGGA-TTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
*
1807430 GACTTATAAATTGTGAAATTTTGAAAATTGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAA
65 GACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAA
*
1807495 CAGT-A-TTTTTTCATTTTCAAATTCTTGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCC
130 CA-TCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCC
*
1807558 GAAGGACTTATCATCCTGCTCTA
194 GAAGGACTTATCATCTTGCTCTA
* *
1807581 AAGGCTTACGGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGTCCGAAGG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
* * *
1807646 ACTTACAAATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTTCATCTTCTTAAAAC
66 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
*
1807711 ATCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
131 ATCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGA
1807776 AGGACTTATCATCTTGCTCTA
196 AGGACTTATCATCTTGCTCTA
* *
1807797 AAGGCTTACAGATGACCCGAAGAATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCAAAGG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
* * *
1807862 ATTTATAAATTGTGAAAATTTGAAAATCGCATTCTTCGTTTTCAAAAATTTCATCTTCTTAAAAC
66 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
*
1807927 ATCATTTTTTT-ATTTTCAAATTGATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGA
131 ATCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGA
1807991 AGGACTTATCATCTTGCTCTA
196 AGGACTTATCATCTTGCTCTA
*
1808012 AAGGCTTACAGATGA-CCGAAAGG-TTTAAGCATCATGCTCGAAAGACTTACTAATGGCCCGAAG
1 AAGGCTTACAGATGACCCG-AAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAG
* *
1808075 GACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCATTTTCAAAAATTTCATCTTCTTAAAA
65 GACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAA
* *
1808140 CATCATTTTTTTCATTTTCAAATTCA-ATGAAAACATCATACCCGAAGGTCTTATGGATGGCCCG
130 CATCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCG
* *
1808204 AATGACTTGTCATCTTGCTCTA
195 AAGGACTTATCATCTTGCTCTA
*
1808226 AAGGCTTACAGATGGCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
1 AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
* * * * *
1808291 ACTTATAAATTGTGAAAATTTGAAAATCACATTCTTTGTTTTAAAAAATCCCATCTTCTTAAAAC
66 ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
* * *
1808356 ATCATTTTTTTTTCATTTCCAAATTCATGTGAAAACATCATACCCGAAGGTCTTATGAATGG
131 ATCA--TTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGG
1808418 ATTTGCTTCA
Statistics
Matches: 981, Mismatches: 52, Indels: 29
0.92 0.05 0.03
Matches are distributed among these distances:
207 22 0.02
208 97 0.10
209 3 0.00
210 1 0.00
211 1 0.00
214 190 0.19
215 311 0.32
216 304 0.31
217 20 0.02
218 32 0.03
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (216 bp):
AAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGG
ACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAAC
ATCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGA
AGGACTTATCATCTTGCTCTA
Found at i:1807847 original size:42 final size:42
Alignment explanation
Indices: 1807785--1807866 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
1807775 AAGGACTTAT
* * * *
1807785 CATCTTGCTCTAAAGGCTTACAGATGACCCGAAGAATTTAAG
1 CATCATGCTCGAAAGACTTACAGATGACCCAAAGAATTTAAG
* * *
1807827 CATCATGCTCGAAAGACTTACTGATGGCCCAAAGGATTTA
1 CATCATGCTCGAAAGACTTACAGATGACCCAAAGAATTTA
1807867 TAAATTGTGA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (42 bp):
CATCATGCTCGAAAGACTTACAGATGACCCAAAGAATTTAAG
Found at i:1808240 original size:41 final size:41
Alignment explanation
Indices: 1808195--1808295 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 41
1808185 AGGTCTTATG
* * * *
1808195 GATGGCCCGAATGACTT-GTCATCTTGCTCTAAAGGCTTACA
1 GATGGCCCGAAGGACTTAG-CATCATGCTCGAAAGACTTACA
* *
1808236 GATGGCCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACT
1 GATGGCCCGAAGGACTT-AGCATCATGCTCGAAAGACTTACA
1808278 GATGGCCCGAAGGACTTA
1 GATGGCCCGAAGGACTTA
1808296 TAAATTGTGA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
41 16 0.31
42 34 0.67
43 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
Found at i:1808293 original size:20 final size:20
Alignment explanation
Indices: 1808226--1808295 Score: 54
Period size: 20 Copynumber: 3.5 Consensus size: 20
1808216 TCTTGCTCTA
*
1808226 AAGG-CTTACAGATGGCCCG
1 AAGGACTTACTGATGGCCCG
* * *
1808245 AAGGATTTAAGCATCAT-GCTCG
1 AAGGACTT-A-C-TGATGGCCCG
*
1808267 AAAGACTTACTGATGGCCCG
1 AAGGACTTACTGATGGCCCG
1808287 AAGGACTTA
1 AAGGACTTA
1808296 TAAATTGTGA
Statistics
Matches: 37, Mismatches: 9, Indels: 9
0.67 0.16 0.16
Matches are distributed among these distances:
19 7 0.19
20 15 0.41
21 2 0.05
22 11 0.30
23 2 0.05
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (20 bp):
AAGGACTTACTGATGGCCCG
Found at i:1808460 original size:37 final size:37
Alignment explanation
Indices: 1808420--1808562 Score: 166
Period size: 36 Copynumber: 3.9 Consensus size: 37
1808410 ATGAATGGAT
* *
1808420 TTGCTTCACTATTCTCCGGTGAAGGCTTAAGATGGTT
1 TTGCTTCACTACTCTCCGGTGAAGGCTTAAGATGGTA
* *
1808457 TTGCTTCACTATTCTCCGGTGAAGGCTTTAGAT--TAA
1 TTGCTTCACTACTCTCCGGTGAAGGCTTAAGATGGT-A
* * *
1808493 CTGCTTCATTACTCTTCGGTGAAGGCTTAAGATGG-A
1 TTGCTTCACTACTCTCCGGTGAAGGCTTAAGATGGTA
* **
1808529 TTGCTTCACTACTATTTGGTGAAGGCTTAAGATG
1 TTGCTTCACTACTCTCCGGTGAAGGCTTAAGATG
1808563 AATTGCTCCA
Statistics
Matches: 92, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
35 1 0.01
36 59 0.64
37 32 0.35
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (37 bp):
TTGCTTCACTACTCTCCGGTGAAGGCTTAAGATGGTA
Found at i:1809529 original size:128 final size:128
Alignment explanation
Indices: 1809301--1809595 Score: 482
Period size: 128 Copynumber: 2.3 Consensus size: 128
1809291 CTGAACCTTG
* * *
1809301 TCATCTCAACATGATGTGGGTTCAGTCGTGCCCCAACATTATCTTATACTGGTACGGGCCTTTAA
1 TCATCTCAACCTAATGTGGGTTCAGTCGTGCCCCAACATTATCTTATACTGGTACGGGCCTTCAA
* *
1809366 AATGCCCCATCACCTCAGATTGTAAGGCTCATTCTTCATGCCTTCTTTTTCTTTTAAATCTTA
66 AATGCCCCATCACCTCAGATTGTAAGGCTCATTCTTCATGCCTTCTTCTTCTTCTAAATCTTA
* *
1809429 TCATCTCAACCTAATGTGGGTTCAGTCATTCCCCAACATTATCTTATACTGGTACGGGCCTTCAA
1 TCATCTCAACCTAATGTGGGTTCAGTCGTGCCCCAACATTATCTTATACTGGTACGGGCCTTCAA
* * *
1809494 AATGCCCCATCACCTCAGATTGTAAGGCTCATTCTTCATTCCTTCTTCTTCTTCTGAATCTTG
66 AATGCCCCATCACCTCAGATTGTAAGGCTCATTCTTCATGCCTTCTTCTTCTTCTAAATCTTA
* *
1809557 TCATCTCAACCTAATGTGTGTTCAGCCGTGCCCCAACAT
1 TCATCTCAACCTAATGTGGGTTCAGTCGTGCCCCAACAT
1809596 ATCACAACTT
Statistics
Matches: 153, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
128 153 1.00
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.35
Consensus pattern (128 bp):
TCATCTCAACCTAATGTGGGTTCAGTCGTGCCCCAACATTATCTTATACTGGTACGGGCCTTCAA
AATGCCCCATCACCTCAGATTGTAAGGCTCATTCTTCATGCCTTCTTCTTCTTCTAAATCTTA
Found at i:1810507 original size:14 final size:16
Alignment explanation
Indices: 1810488--1810520 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
1810478 ATTAAAGATT
1810488 TTATTTA-AAA-AAAA
1 TTATTTACAAATAAAA
1810502 TTATTTACAAATAAAA
1 TTATTTACAAATAAAA
1810518 TTA
1 TTA
1810521 ACCCTGAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 3 0.18
16 7 0.41
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
TTATTTACAAATAAAA
Found at i:1815027 original size:20 final size:20
Alignment explanation
Indices: 1815004--1815050 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
1814994 AAATTAATAA
1815004 GCAAATGCAAAAATAAGAAT
1 GCAAATGCAAAAATAAGAAT
1815024 GCAAATGCAAAAATAAGAAT
1 GCAAATGCAAAAATAAGAAT
1815044 GCAAATG
1 GCAAATG
1815051 TAGATGCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.57, C:0.11, G:0.17, T:0.15
Consensus pattern (20 bp):
GCAAATGCAAAAATAAGAAT
Found at i:1821041 original size:22 final size:22
Alignment explanation
Indices: 1821013--1821058 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
1821003 AAAAAATGTT
1821013 GAAAAAAAATAGCAGTTCGAAAAA
1 GAAAAAAAA-A-CAGTTCGAAAAA
*
1821037 GAAAAAAAAACTGTTCGAAAAA
1 GAAAAAAAAACAGTTCGAAAAA
1821059 AAAGACATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.52
23 1 0.05
24 9 0.43
ACGTcount: A:0.63, C:0.09, G:0.15, T:0.13
Consensus pattern (22 bp):
GAAAAAAAAACAGTTCGAAAAA
Found at i:1824815 original size:36 final size:36
Alignment explanation
Indices: 1824700--1824866 Score: 199
Period size: 36 Copynumber: 4.6 Consensus size: 36
1824690 TCTTGCTATA
* *
1824700 AAGGCTTACAGATGGATTTGCTTCACTATTCTCCGATG
1 AAGGCTTA-AGATGGA-TTGCTTCACTACTCTCCGGTG
* *
1824738 AAGGCTTAAGATGGTTTTGCTTCACTATTCTCCGGTG
1 AAGGCTTAAGATGG-ATTGCTTCACTACTCTCCGGTG
* * * *
1824775 AAGGCTTTAGATTGATTGCTTCACTACTCTTCGGTA
1 AAGGCTTAAGATGGATTGCTTCACTACTCTCCGGTG
* **
1824811 AAGGCTTAAGATGGATTGCTTCACTACTATTTGGTG
1 AAGGCTTAAGATGGATTGCTTCACTACTCTCCGGTG
*
1824847 AAGGCTTAAGATGAATTGCT
1 AAGGCTTAAGATGGATTGCT
1824867 CCAATCTCAT
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
36 68 0.60
37 38 0.33
38 8 0.07
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (36 bp):
AAGGCTTAAGATGGATTGCTTCACTACTCTCCGGTG
Found at i:1835382 original size:21 final size:21
Alignment explanation
Indices: 1835356--1835398 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1835346 AAGCTAATTG
1835356 ACTATTTGAGTCTAATTATGT
1 ACTATTTGAGTCTAATTATGT
1835377 ACTATTTGAGTCTAATTATGT
1 ACTATTTGAGTCTAATTATGT
1835398 A
1 A
1835399 TATATGGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (21 bp):
ACTATTTGAGTCTAATTATGT
Found at i:1835556 original size:14 final size:14
Alignment explanation
Indices: 1835537--1835563 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1835527 TAAAGAGTGA
1835537 TATGGAAAAATAAC
1 TATGGAAAAATAAC
1835551 TATGGAAAAATAA
1 TATGGAAAAATAA
1835564 AATTGAACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.15, T:0.22
Consensus pattern (14 bp):
TATGGAAAAATAAC
Found at i:1845533 original size:15 final size:16
Alignment explanation
Indices: 1845503--1845533 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1845493 GAGGATAACA
1845503 AAAATAAAAGTAAAGT
1 AAAATAAAAGTAAAGT
1845519 AAAATAAAA-TAAAGT
1 AAAATAAAAGTAAAGT
1845534 GAGAGTGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (16 bp):
AAAATAAAAGTAAAGT
Found at i:1847705 original size:59 final size:59
Alignment explanation
Indices: 1847579--1847706 Score: 139
Period size: 59 Copynumber: 2.2 Consensus size: 59
1847569 GTAGTGCTAG
* * * ** * *
1847579 CCCGAGTATGACACATAAGGTCGTGTCCACCCTATGTACTAGGTATACTTAAGTACATT
1 CCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGCTATACTTAAGTACAGT
** * * * *
1847638 CCTAAATATGACACATAAGGTTGTGCCCACTATATACACTAGCTATACTTTAGTATAGT
1 CCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGCTATACTTAAGTACAGT
1847697 CCCGAATATG
1 CCCGAATATG
1847707 CAGCCTGCTG
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (59 bp):
CCCGAATATGACACATAAGGTCGTGCCCACCATATACACTAGCTATACTTAAGTACAGT
Found at i:1853340 original size:137 final size:136
Alignment explanation
Indices: 1853094--1853376 Score: 379
Period size: 137 Copynumber: 2.1 Consensus size: 136
1853084 TGCACCTAAG
* * * *
1853094 TGTCGAAATGGAATTTCAGAAACTTATTATAAATTCCATAGATGCACATATAGTGCCGAAAGTAC
1 TGTCGAAATGGAATTTCACAAACTCATTATAAATACCATAGATACACATATAGTGCCGAAAGTAC
* * *
1853159 ATATAGTACTGATACAAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCTTCATACAC
66 ACATAGTACTGATACAAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATCATAAAC
1853224 AAATGTA
131 -AATGTA
* * * * *
1853231 TGTCGAAATGGTAA-TTCACAAACTCATTATGAATACCATGGTTACACATCTAGTGTCGAAAGTA
1 TGTCGAAATGG-AATTTCACAAACTCATTATAAATACCATAGATACACATATAGTGCCGAAAGTA
* * * *
1853295 CACATAGTATTGATACGAATATGCAACATATGCATTAAACAAAATCGATTGATAACCATCATAAA
65 CACATAGTACTGATACAAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATCATAAA
*
1853360 CAGTGTA
130 CAATGTA
*
1853367 TATCGAAATG
1 TGTCGAAATG
1853377 CACCTAGGAC
Statistics
Matches: 127, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
136 14 0.11
137 111 0.87
138 2 0.02
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (136 bp):
TGTCGAAATGGAATTTCACAAACTCATTATAAATACCATAGATACACATATAGTGCCGAAAGTAC
ACATAGTACTGATACAAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATCATAAAC
AATGTA
Found at i:1854396 original size:25 final size:25
Alignment explanation
Indices: 1854368--1854415 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
1854358 AACTGACCAT
*
1854368 ATTTCATCAAATCACTTAAAAATTC
1 ATTTCATCAAATCACTAAAAAATTC
* * *
1854393 ATTTTATTAAATCTCTAAAAAAT
1 ATTTCATCAAATCACTAAAAAAT
1854416 AACTAATCTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.40
Consensus pattern (25 bp):
ATTTCATCAAATCACTAAAAAATTC
Found at i:1856580 original size:2 final size:2
Alignment explanation
Indices: 1856573--1856601 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1856563 TATGTTAAAC
1856573 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1856602 ACTAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1858408 original size:21 final size:21
Alignment explanation
Indices: 1858382--1858425 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
1858372 ATATGCACAG
1858382 TGGTTGTGTTTCTAAATATGT
1 TGGTTGTGTTTCTAAATATGT
1858403 TGGTTGTGTTTCTAAATATGT
1 TGGTTGTGTTTCTAAATATGT
1858424 TG
1 TG
1858426 ATTATTCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.05, G:0.25, T:0.52
Consensus pattern (21 bp):
TGGTTGTGTTTCTAAATATGT
Found at i:1875167 original size:21 final size:21
Alignment explanation
Indices: 1875141--1875200 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
1875131 CGTCAAGGTT
1875141 TTTGTTGAAGCCATGAAATCA
1 TTTGTTGAAGCCATGAAATCA
*
1875162 TTTGTTGAAGCCATGAAATCT
1 TTTGTTGAAGCCATGAAATCA
*
1875183 TTTGTTGAGGCCAT-AAAT
1 TTTGTTGAAGCCATGAAAT
1875201 TCCTGCAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
20 4 0.11
21 33 0.89
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (21 bp):
TTTGTTGAAGCCATGAAATCA
Found at i:1879133 original size:137 final size:137
Alignment explanation
Indices: 1878887--1879154 Score: 398
Period size: 137 Copynumber: 2.0 Consensus size: 137
1878877 TGCAACTAAG
* * *
1878887 TGTCGAAATAGAATTTCACAAACTTATTATGAATTCCATGGATGCACACATAATGTTGAAAGTAC
1 TGTCGAAATAGAATTTCACAAACTTATTATGAATACAATGGATGCACACATAATGTCGAAAGTAC
* * *
1878952 ATATAGTACTGATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCTTCATACAC
66 ACAAAGTACTGATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATCATACAC
1879017 AAATGTA
131 AAATGTA
* * *
1879024 TGTCGAAATGGTAA-TTCACAAA-TTCATTATGAATACAATGGCTGCACATC-TAGTGTCGAAAG
1 TGTCGAAATAG-AATTTCACAAACTT-ATTATGAATACAATGGATGCACA-CATAATGTCGAAAG
*
1879086 TACACAAAGTACTGATACGAAAATGCAACATATGCATTAAACAAAATCGTTCGATAACCATCATA
63 TACACAAAGTACTGATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATCATA
1879151 CACA
128 CACA
1879155 TTATGTATCG
Statistics
Matches: 118, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
136 2 0.02
137 113 0.96
138 3 0.03
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (137 bp):
TGTCGAAATAGAATTTCACAAACTTATTATGAATACAATGGATGCACACATAATGTCGAAAGTAC
ACAAAGTACTGATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATCATACAC
AAATGTA
Found at i:1881797 original size:937 final size:939
Alignment explanation
Indices: 1879275--1898995 Score: 28845
Period size: 949 Copynumber: 21.0 Consensus size: 939
1879265 ATAAAAGTTT
*
1879275 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCAAAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1879340 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
**
1879405 CCATTTTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* *
1879470 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTCCTTGCTTGACTCATGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1879535 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1879600 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* *
1879665 CATTTCAGACTGAATAGCATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACGGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
1879730 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* *
1879795 CCTTCCTCTTGGTATTGATATATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
1879860 TTCATCTGAATC-TCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
*
1879924 CCCACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCA-C-ACAATCTCTTACTCTTATC
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTA-AATCTCTTACTCTTATC
* *
1879987 TCCAACCATACCATTAATCTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTAT
715 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATAT
*
1880052 AACATCCAAAGAACACTCAAAACTAAGAAGCACACCAAATTTTCAAACATGTTATTAAACACTTC
780 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
1880117 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTC
845 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTC
1880182 ATCAAATCACTTAAAAACCCATTATATTAA
910 ATCAAATCACTTAAAAACCCATTATATTAA
*
1880212 ATCTATTAATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * * *
1880277 G-AATTTTATCAAAATACTATAAATCATACTTTTATCTAAATATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* * *
1880341 CCATCTTCGTCTCATATAAGTACATAAAATTGCACTCACCTGGTATGCCTGACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* * * *
1880406 ATGATGTCAAACTATACGACAACTTTATCTTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1880471 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
* * * *
1880536 T-TTAAGTAATAATGCACAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTCAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
1880600 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
* * *
1880665 TACCCTCTTTGGTATCGGTACCATTCTAGCATTCTGGAATTTTATTTTTTATTACGGTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* *
1880730 CCTTCTTCTTGGTATCGATACATACACCTCAGAATTGATACTTCTTTAAATCGGTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
1880795 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
*
1880860 CCAATATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
* * *
1880925 CCAACCATACCATTAAACTCATTATCACTTATCAAAGTTAACTTACA-CCCAAACTCTCCATATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
* *
1880989 ACATCTAAAGAACACTCAAAACTAAGAATCACACCAAATTTTTAAACATGTTATTAAACACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
* *
1881054 AAGGCTTCCAATCACTTATTTACTTCTTTGA-AAATCAAATATGCTTTTAAACTCCAATATTTCA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTCA
1881118 TCAAATCACTTAAAAACCCATTATATTAA
911 TCAAATCACTTAAAAACCCATTATATTAA
*
1881147 ATCTATTCATTTTATAGCAGTTCATACTTTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1881212 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1881277 TCATCCTCGTCTCATATAAGTACTTAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* * *
1881342 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTCCTTGCTTAACTCATGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
* *
1881407 ATGATCTACACAACCATCCATAATCATACATATAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
*
1881472 TCTAAAGTAATAATACTCAAAAGTAGTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* * **
1881537 CATTTCAGACTGAATAGTATTGGTACCTATCCTATAGTATCGATACTTCTCTTCTATGGTTTGGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
*
1881602 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGTTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* * * *
1881667 CCTTCCTCTTGGTATCGACACATACACCTCAGAATCGATACTTCTTTAAACCGGTATCAATGCTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
* *
1881732 TTCATATGAATCATCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* * *
1881797 CCCATATTTTACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTAAATCTCTTACTCTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
*
1881862 TCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCC-TAAT
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCAT-AT
*
1881926 AAAATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
780 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
*
1881991 TAAGGCTTCCAATCTCTTATTTACTTCTTTCACAAGTCAAATATGCTTTTAAACTCCAATAATTG
845 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C--------
* *
1882056 ACAATATTTCAACAAATCACTTAAAAACCCATTTTATTAA
901 -CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
* * *
1882096 TTCTATTCATTTTATAGCAGTTCATACTCTAAAATTAGTCATAAAATCCTTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * *
1882161 GAAATTATATCAAAATATTGTAAATCATATTTTTATTAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1882226 CCATCCTCGTCTCATATTAGTACATAAAAATGCATTCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* *
1882291 ATGATGTCCAACTATTCGTCAACTTTATCCTTGCCCTTTTTCTTTCTTGAC-CGAGGAGCTTGAT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTC-AGGAGCTTGAT
1882355 TACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
260 TACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
* * * *
1882420 AT-TTAAGTAATAA-AGCACAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATGTCAACTT
325 ATCTAAAGTAATAATA-CTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTT
*
1882483 AACATTTCAGACTGAATAGTATTGGTATCTATCCTACAGTATCCATACTTCTCTTCTATGGTACG
389 AACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACG
* * *
1882548 GATACCCACTTTGGTATCGGTACCATTTTAGTATTCTGGAATTTCATTTTTTATTACGGTATCGA
454 GATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGA
* *
1882613 TACCTTCTTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATAT
519 TACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATAC
* *
1882678 TGTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTTCTGTCCCGATAACCT
584 TGTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCT
* *
1882743 TACCAACATTTTACCTATTTTCCTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTAT
649 TACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTAT
* *
1882808 CTCCAACCATACCATTAAACTCATTATCACATATCCAAGTTAACTTACACCCAAAAATCTCCATA
714 CTCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATA
1882873 TAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTT
779 TAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTT
**
1882938 CTAAGGCTTCCAATCTCTTATTTTTTTTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAT
844 CTAAGGCTTCCAATCTCTTA--TTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAT
* *
1883003 TTCATCAAATCATTTAAAAACCCATTATATAAA
907 TTCATCAAATCACTTAAAAACCCATTATATTAA
* *
1883036 ATTTATTCATTTTATAGCAGTTCATACTTTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * *
1883101 GAAATTATATTAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
*
1883166 CCATCCTCGTCTCATATAAGTACATAAAAATGAACTCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* *
1883231 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
*
1883296 ACGATCTACACAACCATCCATAATCATACAT-CTAAATATGATGCTAGTATACATACTAACACTT
261 ACGATCTACACAACCATCCATAATCATACATAC-AAATATGATGTTAGTATACATACTAACACTT
*
1883360 ATCTAAAGTAATAATAATCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTA
325 ATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTA
** * * * ** * * *
1883425 ACATTTCAGACTGATACCCACTTAAGTATCAGTACC-ATTCTAGCATTCTGGA-ATTTCATTTTT
390 ACATTTCAGACTG--A---A--T-AGTATTGGTACCTATCCTA-CAGTATCCATACTTC-TCTTC
* * * * * *
1883488 TATTACGGTATC-GATA--C-CTTC-GTCTTGGTATCGATATATA-CA-CCTCAGAA--TCGATA
445 TA-T--GGTA-CGGATACCCACTTCGGTATCGGTA-CCAT-TCTAGCATTCT-GGAATTTC-AT-
* * * * * * **
1883544 CTTCTTTA-AATCGATATCGATA---T--TGTT--CATC--T-CA-A-TCCTC-TAATTTA-AC-
501 -TT-TTTATTA-CGGTATCGATACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACT
* * * * * ** * * *
1883593 -C-TT--AT-AGTAT-TACACCGTTCTTCCTG--TC--CCGA--TACCCTTACCCA-TATTTA-A
563 TCTTTAAATCGGTATCGATACTGTTCAT-CTGAATCTTCTAATTTAACCTTA--TAGTATCTACA
* * * *** * * * * ** *
1883644 CCTCTT-TT--AGT-TC-A-AATTTTACAAAAATTTCACCTAAATCTCTTAC-TCTTA-TCT-C-
625 -CTGTTCTTCCTGTCCCGATACCCTTACCAACATTTTACC----TCTTTTACTTCGAATTTTACA
** * * * * *
1883699 CAACCATACCA-TTAAA-CTCATTATCACTTATC-CAAGTTAACTTACAT-CCA-AAAATCTCCT
685 CAA--ATTTCACCTAAATCTC-TTA-CTCTTATCTC----CAAC---CATACCATTAAA-CTCAT
* * * * * * * * ** * * ** *
1883759 TATAAC--ATCCAAAG-AACACTCAAAACTAAGAATCACACA-A-AATTTTCAAACATGTTA-TT
738 TATCACTTATCC-AAGTTA-ACTTACATCCAAAAATCTC-CATATAACATCCAAAGA--ACACTC
** ** * ** * ** * * * *
1883818 AAACACTTCTAAGGCTTC-CAATCTCTTATTTAC-TTCTTTGGCAAGTCAAATATGCTTTTAA-A
798 AAA-A---CTAA-GAATCAC-A-C-CAAATTTTCAAAC-AT-GTTA-TTAAACA--CTTCTAAGG
* * * * * * * * * * *
1883880 C-TCCAA----TAATTGACAATATTTCATCAAATCACTTAAAAATCCATTTTATTAAATCTATTC
850 CTTCCAATCTCTTATTTAC-TTCTTTGA-CAAGT--C--AAATATGC-TTTTA--AACTCCAAT-
* ** * ** * * * *
1883940 ATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCAT
905 ATTTCAT--CAAATC--ACT-T-AAA-AACCCATTATATTAA
* ** * * * * ** *
1883982 TTCCATAACCA--TTAT-GAAATT-ATA-T-T-AAAATACT-AT-AAATCATAATTTGATCAAAA
1 AT-C-TATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCAT--TTCCAT--AAC
* ** * * * **
1884038 CATT-T-AAGGTTGAT-TC---AT-C-GTAAGCCATCCTCGTCTCATAT-AAGTACA-TAAAAAT
60 CATTATGAA-ATT-ATATCAAAATACTGTAAATCATACT--T-T--TATCAA-AACATTTAAGGT
** * * * ** * * * * * ** * ** * *
1884093 ACACTCACCTGTTATGCC-TCACTATTATGCCT-TACTGTTGTC-CAACTATTC-GGCAACT-TT
117 TGATTCATC-G-TAAGCCATC-CTCGTCT-CATATA-AG-T-ACATAAAAATGCACTCACCTGGT
* * * * * * ** * *
1884153 AT-CCTTGCCCT-TT-T-TCTTACT--TGACTCAGGAGCTTGATTACGATCTAC-ACAACCAT--
175 ATGCC-T-CACTATTATGCCTTAATGATGTC-CA--A-C-T-ATT-CG-GCAACTTTATCCTTGC
* ** * * * * * * * *
1884209 CCATAATCATACATATAAAT-ATGATG-TT-AGTATAC-ATACTA-AC-ACTTATCTA-AAGTAA
230 CCTTTTTCTTGC-T-TGACTCAGGA-GCTTGA-T-TACGAT-CTACACAAC-CATCCATAA-TCA
* * * * *
1884267 TA-ATACTCAA-A--A-G-TACTATAAAT-TTCAA-A--T-TCT--ATTAA-AA-----------
287 TACATAC-AAATATGATGTTAGTATACATACT-AACACTTATCTAAAGTAATAATACTCAAAAGT
**
1884307 --------------------------TTCATCTTAACTTAACATTTCAGACTGAATAGTATTTTT
350 ACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAACATTTCAGACTGAATAGTATTGGT
* * * *
1884346 ACATATCCTACAGTATCGATACTTATCTTCTATGGTACGGATACCCACTTCAGTATCGGTACCAT
415 ACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGATACCCACTTCGGTATCGGTACCAT
1884411 TCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATACCTTCCTCTTGGTATCGATACATA
480 TCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATACCTTCCTCTTGGTATCGATACATA
* * *
1884476 CACCTCAGAATCGATATTTCTTTAAATCGATATCGATACTGTTCATCTGAATCCTCTAATTTAAC
545 CACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTGTTCATCTGAATCTTCTAATTTAAC
* * * * * *
1884541 CTTATACTAT-TACACTGTTCTTCCTGTCCCGACACCCTTACCCATATTTGACTTCTTTTACTTC
610 CTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTACCAACATTTTACCTCTTTTACTTC
* * *
1884605 AAATTTTACAAAAATTTCACTTAAATCTCTTACTCTTATCTCCAACCATACCATTAAACTCATTA
675 GAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCTCCAACCATACCATTAAACTCATTA
* *
1884670 TCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTATAATATCCAAAGAACACTCAAAACTA
740 TCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATAACATCCAAAGAACACTCAAAACTA
*
1884735 AGAATCACACCAAATATTCAAACATGTTATTAAACACTTCTAAGGCTTCCAATCTCTTATTTACT
805 AGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCTAAGGCTTCCAATCTCTTATTTACT
* *
1884800 TCTTTGGCAAGTCAAATATGCTTTTAAACTCCAATAATTGCCAATATTTCATCAAATCTCTTAAA
870 TCTTTGACAAGTCAAATATGCTTTTAAA---C------T-CCAATATTTCATCAAATCACTTAAA
*
1884865 AACCCATTTTATTAA
925 AACCCATTATATTAA
*
1884880 ATCTATTTATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
** * *
1884945 GAAATTATATCAAAATACAATAAATCATAATTTGATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
*
1885010 CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* * *
1885075 ATGTTGTCCAACTATTCGGTAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1885140 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1885205 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* *
1885270 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACAGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
* * *
1885335 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTCGAATTTCATTTTTTATTACGGTATAGATG
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
*
1885400 CCTTCTTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
* * *
1885465 TTTATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTATCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* * * * *
1885530 CCCATATTTGACCTCTTTTACTTCGAATTTTACAAAAAATTCACCTAAATCTCTTACTCTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
* * * *
1885595 CCAACCATACCATTAAACTCATTATCTCATATCCAAGTTAACTTACATCGAAAAATCTCCTTATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
1885660 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
*
1885725 AAGGCTTCCAATCTTTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTGA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C---------
* * *
1885790 CAATATTTCATCAAATCGCTTAAAACCCCATTTTATTAA
901 CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
* *
1885829 ATCTATTCATTTTATAGCAGTTCATTCTCTAAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* *
1885894 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1885959 CCATCCTCGTCTCATATAAGTACATAAAAATACAATCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* * *
1886024 ATGTTGTCCAACTATTAGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1886089 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1886154 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* *
1886219 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACAGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
* * *
1886284 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTCGAATTTCATTTTTTATTACGGTATAGATG
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
*
1886349 CCTTCTTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
* * *
1886414 TTTATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTATCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* * * * *
1886479 CCCATATTTGACCTCTTTTACTTCGAATTTTACAAAAAATTCACCTAAATCTCTTACTCTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
* * * *
1886544 CCAACCATACCATTAAACTCATTATCTCATATCCAAGTTAACTTACATCGAAAAATCTCCTTATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
1886609 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
*
1886674 AAGGCTTCCAATCTTTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTGA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C---------
* * *
1886739 CAATATTTCATCAAATCGCTTAAAACCCCATTTTATTAA
901 CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
* *
1886778 ATCTATTCATTTTATAGCAGTTCATTCTCTAAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* *
1886843 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1886908 CCATCCTCGTCTCATATAAGTACATAAAAATACAATCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* * *
1886973 ATGTTGTCCAACTATTAGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1887038 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
* *
1887103 TCTAAAGTAATAATACTCTAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCATAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
** ** * * *
1887168 CATTTCAGACTGAATAGTATTGGTACAAATCCTACAGTATAGATACTTATCTTTTATGGCACGGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
* * *
1887233 TACCCACTTCGGTATCGGTGCCATTCTAGCTTTCTGGAATTTCATTTTTTGTTACGGTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* * *
1887298 CCTTCCTCTTGGTATCGATAGATACACCTCAGAATCAATACTTCTTTAAATCGTTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
* * *
1887363 TTCATCTGAATCCTATAATTTAACCTTATAGTATCTACATTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* * * * *
1887428 CCCATATTTTACCTATTTTACTTCGAATTTTACAAAAATTTCACATAAATCTCTTACTCTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
* *
1887493 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAACTCTCCTTATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
*
1887558 ACATCCAAAGAACACTCAAAACTATGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
*
1887623 AAGGCTTCCAATCTCTTATTTAATTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTGA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C---------
* *
1887688 CAATATTTCATAAAATCACTTAAAAACCCATTTTATTAA
901 CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
* * * *
1887727 ATCTATTCATTTTATAGTAGTTCATACTTTGAAATTAGTCATAAAATAATTTCCATAACCAATAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
** * *
1887792 GAAATTATATCAAAATACAATAAATCATAATTTTATCAAAACATTTAAGGTTGTTTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* * * *
1887857 ACATCCTCGTCTCATATAAGTACATAAAAATTCAATCACCTAGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* *
1887922 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
* *
1887987 ATGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTGTACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1888052 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* *
1888117 CATTTCAGACTGAATACTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACGGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
*
1888182 TACCCAC-TCTGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTAATTACGGTATCGAT
456 TACCCACTTC-GGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGAT
*
1888246 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATATT
520 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACT
*
1888311 GTTCATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTT
585 GTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTT
*
1888376 ACCCACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATC
650 ACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATC
* *
1888441 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACACCCAAAAATCTCCTTAT
715 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATAT
*
1888506 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAATACTTC
780 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
1888571 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTC
845 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTC
1888636 ATCAAATCACTTAAAAACCCATTATATTAA
910 ATCAAATCACTTAAAAACCCATTATATTAA
* **
1888666 ATCTATTCATTTTATAGCAGTTCATACTCCGAAATTAGTCATAAAAAAATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * * *
1888731 GAATTTATATCAAAATACTGTAAATCATACTTTTATCTAAATATTTAAGGTTGATTTATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1888796 CCATCCTCGTCTCATATAAGTACATAAAATTGCACTCACCTGGTATGCCTTACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* ** * * *
1888861 ATGATGTCAAACTATTCAACAACTTTATCCTTTCCATTTTTCTTGCTTGACTCAGGAGGTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1888926 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
* * ** * *
1888991 T-TTAAGTAATAATGCAAAAAAGTACAATAAATTTCAAATTCTATTAAAATTCATCTCAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* * *
1889055 CATTTTAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTGTCTTCTATGGTACTGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
* *
1889120 TACCCACTTCGGTATCGGTACCATTTTAGCATTCAGGAATTTCATTTTTTATTACGGTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* *
1889185 CCTTCTTCTTGGTATCGATACATACACCTCAGAATCGATAATTCTTTAAATCGGTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
*
1889250 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTTCTGTCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* *
1889315 CCAACATTTTACCTCTTTTACTTTGAATTTTACACAAATTTCACCTAAATCTCTTACTTTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
*
1889380 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACACCCAAAAATCTCCATATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
*
1889445 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAA-TTTCAAACATGTTATTAAAAACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
*
1889509 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTAAAATATGCTTTTAAACTCCAATATTTCA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTCA
*
1889574 TCAAATCATTTAAAAACCCATTATATTAA
911 TCAAATCACTTAAAAACCCATTATATTAA
*
1889603 ATCTATTCATTTTATAGCAGTTCATACTTTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1889668 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
1889733 CCATCCTCGTCTCATATAAGTACATAAAAAT-CAACTCACCTGGTATGCCTCACTATTATGCCTT
131 CCATCCTCGTCTCATATAAGTACATAAAAATGC-ACTCACCTGGTATGCCTCACTATTATGCCTT
* * *
1889797 AATGATGTCCAACTATTCTGCAACTTTATCCTTGCCCTTTTCCTTGCTTGACTCAAGAGCTTGAT
195 AATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGAT
*
1889862 TATGATCT--------A--CATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
260 TACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
1889917 ATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTA
325 ATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTA
* *
1889982 ACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACAG
390 ACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGG
*
1890047 ATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGATATCGAT
455 ATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGAT
* *
1890112 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATATTTCTTTAAATCGATATCGATACT
520 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACT
* * * *
1890177 GTTCATCTGAATCCTCTAATTTAACCTTATACTAT-TACAGTGTTCTTCCTGTCCCGACACCCTT
585 GTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTT
* * * * * * *
1890241 ACCCATATTTGACTTCTTTTACTTCAAATTTTACAAAAATTTCACTTAAATCTCTTACTCTTATC
650 ACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATC
* *
1890306 TCCAACCATACCATTAAACTCATTATCACTTATCCAGGTTAACTTACATCAAAAAATCTCC-TCA
715 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCAT-A
*
1890370 TAATATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTT
779 TAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTT
*
1890435 CTAAGGCTTCCAATCTCTTATTTACTTCTTTGGCAAGTCAAATATGCTTTTAAACTCCAATAATT
844 CTAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C-------
* *
1890500 GACAATATTTCATCAAATCTCTTAAAAACCCATTTTATTAA
901 --CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
1890541 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
** *
1890606 GAAATTATATCAAAATACAATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1890671 CCATCCTCGTCTCATATAAGTACATAAAAATACAATCACCTGGTATGCCTCACTATTA-GTCAAT
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATG-C---
* * * *
1890735 TTTAATGTTGACCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTT
192 CTTAATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTT
*
1890800 GATTACGATCTACACAACCGTCCATAATCATACATACAAATATGATGTTAGTATACATACTAACA
257 GATTACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACA
1890865 CTTATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAAC
322 CTTATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAAC
* *
1890930 TTAACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTATCTTCTATGGTA
387 TTAACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTA
* * * *
1890995 TGTATACCCACTTTGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATA
452 CGGATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATC
* *
1891060 GATGCCTTCTTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGAT
517 GATACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGAT
* * *
1891125 ACTATTTATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACC
582 ACTGTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACC
* * * *
1891190 CTTACCCATATTTGACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTAAATCTCTTACTCTT
647 CTTACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTT
* * * *
1891255 ATCTCCAACCATACCATTAAACTCATTATCTCATATCCAAGTTAACTTACATCGAAAAATCTCCT
712 ATCTCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCA
1891320 TATAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACAC
777 TATAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACAC
*
1891385 TTCTAAGGCTTCCAATCTTTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAA
842 TTCTAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C-----
* * *
1891450 TTGACAATATTTCATCAAATCGCTTAAAACCCCATTTTATTAA
901 ----CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
*
1891493 ATCTATTCATTTTATAGCAGTTCATTCTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * *
1891558 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAAGATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
*
1891623 CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* * * *
1891688 ATGTTGTCTAACTATTCGGCAACTTTATCCTTGCTCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1891753 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1891818 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
** * *
1891883 CATTTCAGACTGAATAGTATTGGTA-CTAATCCTACAGTATAGATACTTATCTTTTATGGTACGG
391 CATTTCAGACTGAATAGTATTGGTACCT-ATCCTACAGTATCCATACTTCTCTTCTATGGTACGG
* *
1891947 ATACCCACTTCGGTATCGGTACCATTCTAGCTTTTTGGAATTTCATTTTTTATTACGGTATCGAT
455 ATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGAT
* * *
1892012 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCAATACTTCTTTAAATCGTTATCGATATT
520 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACT
** * *
1892077 GTTCATCTGAATCCACTAATTTAACCTTATAGTATCCACATTGTTCTTCCTGTCCCGATACCCTT
585 GTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTT
* * * * * *
1892142 ACCCATATTTTACCTATTTTACTTCGAATTGTACAAAAATTTCACATAAATCTCTTACTCTTATC
650 ACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATC
* * *
1892207 TCCAACCATACCATTAAACTGATTATCACTTATCCAAGTTAACTTACATCCAAAACTCTCCTTAT
715 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATAT
*
1892272 AACATCCAAAGAACACTCAAAACTATGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
780 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
*
1892337 TAAGGCTTCCAATCTCTTATTTAATTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTG
845 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAAT-ATT-
* *
1892402 ACAATATTTCAAAAAATCACTTAAAAACCCATTTTATTAA
908 TC---A--TC---AAATCACTTAAAAACCCATTATATTAA
* *
1892442 ATCTATTCATTTTATAGCAGTTCATACTTTGAAATTAGACATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
** * *
1892507 GAAATTATATCAAAATACAATAAATCATAATTTTATCAAAACATTTAAGGTTGTTTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1892572 CCATCCTCGTCTCATATAAGTACATAAAAATTCAATCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* *
1892637 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
* *
1892702 ATGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTGTACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1892767 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* *
1892832 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCTATACTTCTCTTCTATGGTACGAA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
*
1892897 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATTGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* *
1892962 CCTTCATCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATATTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
* *
1893027 TTCATCTGAATCCTCTAATTTAACCTTATAGTATCTAAACTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* *
1893092 CCCACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATATCTTACTCTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
* *
1893157 CCAACCATACCATTAAACTCATTATTACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
*
1893222 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAATACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
1893287 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTCA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTCA
1893352 TCAAATCACTTAAAAACCCATTATATTAA
911 TCAAATCACTTAAAAACCCATTATATTAA
* * * *
1893381 ATCTATTCATTTTATAGCAGTTTATACTCTGAAATTACTCATAAAA-AATTTCCATAACTATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * * *
1893445 GAATTTATATCAAAATACTGTAAATCATACTTTTATCTAAATATTTAAAGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1893510 CCATCCTCGTCTCATATAAGTACATAAAATTGCACTCACCTGGTATGCCTTACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* ** * *
1893575 ATGATGTCAAACTATTCAACAACTTTATCCTTTCCATTTTTCTTGCTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
*
1893640 ACGATCTACACAACCATCCATAATCATACATACAAATATGATATTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
* * ** * *
1893705 T-TTAAGTAATAATGCAAAAAAGTACAATAAATTTCAAATTCTATTAAAA-TCATCTCAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* * *
1893768 CATTTTAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCGTCTATGGTACAGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
1893833 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* *
1893898 CCTTCTTCTTGGTATCGATACATACACCTCAGAATCGATAATTCTTTAAATCGGTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
*
1893963 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTTCTGTCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* * *
1894028 CCAACATTTTACCTCTTTTACTTTGAATTTTACAAAAATTTCACCTAAATCTCTTACTTTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
* *
1894093 CCAACCATACCATTAAACTCATTATCACTTATCCATGTTAACTTACACCCAAAAATCTCCATATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
*
1894158 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAA-TTTCAAACATGTTATTAAAAACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
*
1894222 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATTCTTTTAAACTCCAATATTTCA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTCA
*
1894287 TCAAATCATTTAAAAACCCATTATATTAA
911 TCAAATCACTTAAAAACCCATTATATTAA
*
1894316 ATCTATTCATTTTATAGCAGTTCATACTTTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1894381 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
1894446 CCATCCTCGTCTCATATAAGTACATAAAAAT-CAACTCACCTGGTATGCCTCACTATTATGCCTT
131 CCATCCTCGTCTCATATAAGTACATAAAAATGC-ACTCACCTGGTATGCCTCACTATTATGCCTT
* *
1894510 AATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTCCTTGCTTGACTCAAGAGCTTGAT
195 AATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGAT
* *
1894575 TATGATCT--------A--CATAATCATACATTCAAATATGATGTTAGTATACATACTAACACTT
260 TACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
1894630 ATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTA
325 ATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTA
* *
1894695 ACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACAG
390 ACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGG
1894760 ATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGAT
455 ATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGAT
*
1894825 ACCTTCCTCTTGGTATCGATACATACACCTCCA-AATCGATACTTCTTTAAATCGGTATCTATAC
520 ACCTTCCTCTTGGTATCGATACATACACCT-CAGAATCGATACTTCTTTAAATCGGTATCGATAC
* *
1894889 TGTTCATCTGAATCCTCTAATTTAACCTTATATTATCTACACTGTTCTTCCTGTCCCGATACCCT
584 TGTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCT
* * * * * *
1894954 TACCCATATTTGACCTCTTTTACTTTGAATTTTACAAAAATTTCACCTAAATCTCTTACTTTTAT
649 TACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTAT
* * *
1895019 CTCCAACCATACCATTAAACTCATTATCACATATCCAAGTTAACTTACATCGAAAAATCTCCTTA
714 CTCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATA
1895084 TAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTT
779 TAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTT
* *
1895149 CTAAGTCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCTAATATTT
844 CTAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTT
1895214 CATCAAATCACTTAAAAACCCATTATATTAA
909 CATCAAATCACTTAAAAACCCATTATATTAA
**
1895245 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAAAAATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * * *
1895310 GAATTTATATCAAAATACTGTAAATCATACTTTTATCTAAATATTAAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
*
1895375 CCATCCTCGTCTTATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* * * *
1895440 ATGTTGGCCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCCTACTCT-ACTCAGGAGCTTGA
196 ATGAT-GTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCT-TGACTCAGGAGCTTGA
*
1895504 TTACGATCTACACAACCATCCATAATCATACATATAAATATGATGTTAGTATACATACTAACACT
259 TTACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACT
1895569 TATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTT
324 TATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTT
* * * *
1895634 AACATTTCAGCCTGAATAGTATTGGTACATATCCTACAGTATCGATACTTATCTTCTATGGTACG
389 AACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACG
* *
1895699 GATACCCACTTCAGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGATATCGA
454 GATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGA
* * *
1895764 TACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATATTTCTTTAAATCGATATCGATAT
519 TACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATAC
* * * *
1895829 TGTTCATCTGAATCCTCTAATTTAACCTTATACTAT-TACAGTGTTCTTCCTGTCCCGACACCCT
584 TGTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCT
* * * * * * *
1895893 TACCCATATTTGACTTCTTTTACTTCAAATTTTACAAAAATTTCACTTAAATCTCTTACTCTTAT
649 TACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTAT
*
1895958 CTCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCAAAAAATCTCC-TC
714 CTCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCAT-
*
1896022 ATAATATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACT
778 ATAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACT
*
1896087 TCTAAGGCTTCCAATCTCTTATTTACTTCTTTGGCAAGTCAAATATGCTTTTAAACTCCAATAAT
843 TCTAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C------
* *
1896152 TGACAATATTTCATCAAATCTCTTAAAAACCCATTTTATTAA
901 ---CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
1896194 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
** *
1896259 GAAATTATATCAAAATACAATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1896324 CCATCCTCGTCTCATATAAGTACATAAAAATACAATCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* *
1896389 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1896454 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1896519 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* * * *
1896584 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTATCTTCTATGGTATGTA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
* * * *
1896649 TACCCACTTTGGCATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATAGATG
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* *
1896714 CCTTCTTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTA
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
* *
1896779 TTTATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* * * *
1896844 CCCATATTTGACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTAAATCTCTTACTCTTATCT
651 CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
* * * *
1896909 CCAACCATACCATTAAACTCATTATCTCATATCCAAGTTAACTTACATCGAAAAATCTCCTTATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
1896974 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
* *
1897039 AAGGCTTCCAATCTTTTATTTACTTCTTTGGCAAGTCAAATATGCTTTTAAACTCCAATAATTGA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C---------
* * *
1897104 CAATATTTCATCAAATCGCTTAAAACCCCATTTTATTAA
901 CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
*
1897143 ATCTATTCATTTTATAGCAGTTCATTCTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * *
1897208 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAAGATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
*
1897273 CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
* * *
1897338 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCTCTTTTTCTTACTTGACTCAGGAGCTTGATT
196 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
1897403 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1897468 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
** * *
1897533 CATTTCAGACTGAATAGTATTGGTA-CTAATCCTACAGTATAGATACTTATCTTTTATGGTACGG
391 CATTTCAGACTGAATAGTATTGGTACCT-ATCCTACAGTATCCATACTTCTCTTCTATGGTACGG
* *
1897597 ATACCCACTTCGGTATCGGTACCATTCTAGCTTTTTGGAATTTCATTTTTTATTACGGTATCGAT
455 ATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGAT
* * *
1897662 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCAATACTTCTTTAAATCGTTATCGATATT
520 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACT
** * *
1897727 GTTCATCTGAATCCACTAATTTAACCTTATAGTATCCACATTGTTCTTCCTGTCCCGATACCCTT
585 GTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTT
* * * * * * *
1897792 GCCCATATTTTACCTATTTTACTTTGAATTTTACAAAAATTTCACCTAAATGTCTTACTCTTATC
650 ACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATC
* * *
1897857 TCCAACCATACCATTAAACTCATTATCACATATCCAAGTTAACTTACATCGAAAAATCTCCTTAT
715 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATAT
1897922 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
780 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
*
1897987 TAAGTCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTG
845 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C--------
*
1898052 ACAATATTTCATCAAATCACTTAAAAACCCATTTTATTAA
901 -CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
1898092 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
** * * * *
1898157 GAAATTATATCAAAATACAATAAATCATAATTTTATCAAAACATTTAAAGTTGTTTAATCGTAAG
66 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
*
1898222 CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATTG-CTT
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTA-TGCCTT
* *
1898286 AATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGAT
195 AATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGAT
1898351 TACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
260 TACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
1898416 ATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTA
325 ATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTA
*
1898481 ACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACGG
390 ACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGG
1898546 ATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGAT
455 ATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGAT
*
1898611 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATAAT
520 ACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACT
*
1898676 GTTCATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTT
585 GTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTT
* * *
1898741 ACCCATATTTTACCTCTTTTACTTCGAATTTAACACAAATTTCACCTAAATCTCTTACTCTTATC
650 ACCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATC
* *
1898806 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACAT-CTAAAATCTCCTTAT
715 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATAT
* * * *
1898870 AACATCCAAAGAACATTCAAAACTAAGAATCACACCAGATTTTCAAACATGTTATTGAATACTTC
780 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
*
1898935 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATACTTTTAAACTCCAATA
845 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATA
1898996 ATTGACAATA
Statistics
Matches: 17222, Mismatches: 1153, Indels: 817
0.90 0.06 0.04
Matches are distributed among these distances:
884 1 0.00
885 8 0.00
886 14 0.00
887 8 0.00
888 31 0.00
889 21 0.00
890 2 0.00
891 4 0.00
893 3 0.00
894 1 0.00
895 1 0.00
896 34 0.00
897 4 0.00
898 38 0.00
899 53 0.00
900 35 0.00
901 40 0.00
902 22 0.00
903 45 0.00
904 21 0.00
905 34 0.00
906 15 0.00
907 16 0.00
908 8 0.00
909 15 0.00
910 37 0.00
911 25 0.00
912 14 0.00
913 5 0.00
914 14 0.00
915 11 0.00
916 17 0.00
920 21 0.00
921 10 0.00
922 14 0.00
923 5 0.00
924 5 0.00
925 26 0.00
926 80 0.00
927 290 0.02
928 776 0.05
929 312 0.02
930 77 0.00
931 18 0.00
932 4 0.00
933 10 0.00
934 8 0.00
935 560 0.03
936 1318 0.08
937 962 0.06
938 1061 0.06
939 723 0.04
940 688 0.04
941 173 0.01
942 23 0.00
943 30 0.00
944 36 0.00
945 38 0.00
946 37 0.00
947 9 0.00
948 1291 0.07
949 7122 0.41
950 48 0.00
951 341 0.02
952 506 0.03
953 3 0.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (939 bp):
ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
CCATCCTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
CCAACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCATATA
ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATATTTCA
TCAAATCACTTAAAAACCCATTATATTAA
Found at i:1882942 original size:948 final size:949
Alignment explanation
Indices: 1879275--1883438 Score: 6819
Period size: 936 Copynumber: 4.4 Consensus size: 949
1879265 ATAAAAGTTT
*
1879275 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCAAAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* *
1879340 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
** *
1879405 CCATTTTCGTCTCATATAAGTACATAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATGCCTTA
* * * *
1879470 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTCCTTGCTTGACTCATGAGCTTGATT
196 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
1879535 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
1879600 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
*
1879665 CATTTCAGACTGAATAGCATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACGGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACGGA
1879730 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* *
1879795 CCTTCCTCTTGGTATTGATATATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
1879860 TTCATCTGAAT-CTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* *
1879924 CCCACATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCA-C-ACAATCTCTTACTCTTATC
651 CCCATATTTTACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTA-AATCTCTTACTCTTATC
*
1879987 TCCAACCATACCATTAATCTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTAT
715 TCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTAT
*
1880052 AACATCCAAAGAACACTCAAAACTAAGAAGCACACCAAATTTTCAAACATGTTATTAAACACTTC
780 AACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTC
1880117 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACT-C--------
845 TAAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTG
*
1880173 -CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
910 ACAATATTTCATCAAATCACTTAAAAACCCATTTTATTAA
*
1880212 ATCTATTAATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * * *
1880277 G-AATTTTATCAAAATACTATAAATCATACTTTTATCTAAATATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* * * *
1880341 CCATCTTCGTCTCATATAAGTACATAAAATTGCACTCACCTGGTATGCCTGACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATGCCTTA
* * * * * *
1880406 ATGATGTCAAACTATACGACAACTTTATCTTTGCCCTTTTTCTTGCTTGACTCAGGAGCTTGATT
196 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
1880471 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
* * * *
1880536 T-TTAAGTAATAATGCACAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTCAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
*
1880600 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCCATACTTCTCTTCTATGGTACGGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACGGA
* * *
1880665 TACCCTCTTTGGTATCGGTACCATTCTAGCATTCTGGAATTTTATTTTTTATTACGGTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* *
1880730 CCTTCTTCTTGGTATCGATACATACACCTCAGAATTGATACTTCTTTAAATCGGTATCGATACTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
*
1880795 TTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
* *
1880860 CCAATATTTTACCTCTTTTACTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTATCT
651 CCCATATTTTACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTAAATCTCTTACTCTTATCT
* * * *
1880925 CCAACCATACCATTAAACTCATTATCACTTATCAAAGTTAACTTACA-CCCAAACTCTCCATATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTATA
* *
1880989 ACATCTAAAGAACACTCAAAACTAAGAATCACACCAAATTTTTAAACATGTTATTAAACACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
* *
1881054 AAGGCTTCCAATCACTTATTTACTTCTTTGA-AAATCAAATATGCTTTTAAACT-C---------
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTGA
*
1881108 CAATATTTCATCAAATCACTTAAAAACCCATTATATTAA
911 CAATATTTCATCAAATCACTTAAAAACCCATTTTATTAA
*
1881147 ATCTATTCATTTTATAGCAGTTCATACTTTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* *
1881212 GAAATTATATCAAAATACTGTAAATCATACTTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* * *
1881277 TCATCCTCGTCTCATATAAGTACTTAAAAATGCACTCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATGCCTTA
* * * * *
1881342 ATGATGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTCCTTGCTTAACTCATGAGCTTGATT
196 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
* *
1881407 ATGATCTACACAACCATCCATAATCATACATATAAATATGATGTTAGTATACATACTAACACTTA
261 ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
*
1881472 TCTAAAGTAATAATACTCAAAAGTAGTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
326 TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
* **
1881537 CATTTCAGACTGAATAGTATTGGTACCTATCCTATAGTATCGATACTTCTCTTCTATGGTTTGGA
391 CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACGGA
*
1881602 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGTTATCGATA
456 TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
* * * *
1881667 CCTTCCTCTTGGTATCGACACATACACCTCAGAATCGATACTTCTTTAAACCGGTATCAATGCTG
521 CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
* *
1881732 TTCATATGAATCATCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
586 TTCATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
1881797 CCCATATTTTACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTAAATCTCTTACTCTTATCT
651 CCCATATTTTACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTAAATCTCTTACTCTTATCT
* *
1881862 TCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTAATA
716 CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTATA
*
1881927 AAATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
781 ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
*
1881992 AAGGCTTCCAATCTCTTATTTACTTCTTTCACAAGTCAAATATGCTTTTAAACTCCAATAATTGA
846 AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTGA
*
1882057 CAATATTTCAACAAATCACTTAAAAACCCATTTTATTAA
911 CAATATTTCATCAAATCACTTAAAAACCCATTTTATTAA
* * *
1882096 TTCTATTCATTTTATAGCAGTTCATACTCTAAAATTAGTCATAAAATCCTTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
* * * *
1882161 GAAATTATATCAAAATATTGTAAATCATATTTTTATTAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
* *
1882226 CCATCCTCGTCTCATATTAGTACATAAAAATGCATTCACCTGGTATGCCTCACTATTATGCCTTA
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATGCCTTA
* * *
1882291 ATGATGTCCAACTATTCGTCAACTTTATCCTTGCCCTTTTTCTTTCTTGAC-CGAGGAGCTTGAT
196 ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTC-AGGAGCTTGAT
1882355 TACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
260 TACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTT
* * * *
1882420 AT-TTAAGTAATAA-AGCACAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATGTCAACTT
325 ATCTAAAGTAATAATA-CTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTT
* *
1882483 AACATTTCAGACTGAATAGTATTGGTATCTATCCTACAGTATCCATACTTCTCTTCTATGGTACG
389 AACATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACG
* * *
1882548 GATACCCACTTTGGTATCGGTACCATTTTAGTATTCTGGAATTTCATTTTTTATTACGGTATCGA
454 GATACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGA
* *
1882613 TACCTTCTTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATAT
519 TACCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATAC
* * *
1882678 TGTTCATCTGAATCTTCTAATTTAACCTTATAGTATCTACACTGTTCTTTCTGTCCCGATAACCT
584 TGTTCATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCT
* * * * *
1882743 TACCAACATTTTACCTATTTTCCTTCGAATTTTACACAAATTTCACCTAAATCTCTTACTCTTAT
649 TACCCATATTTTACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTAAATCTCTTACTCTTAT
* * *
1882808 CTCCAACCATACCATTAAACTCATTATCACATATCCAAGTTAACTTACACCCAAAAATCTCCATA
714 CTCCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTA
1882873 TAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTT
779 TAACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTT
**
1882938 CTAAGGCTTCCAATCTCTTATTTTTTTTTCTTTGACAAGTCAAATATGCTTTTAAACT-C-----
844 CTAAGGCTTCCAATCTCTTA--TTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAA
* * *
1882997 ----CAATATTTCATCAAATCATTTAAAAACCCATTATATAAA
907 TTGACAATATTTCATCAAATCACTTAAAAACCCATTTTATTAA
* *
1883036 ATTTATTCATTTTATAGCAGTTCATACTTTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
1 ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
*
1883101 GAAATTATATTAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
66 GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
1883166 CCATCCTCGTCTCATATAAGTACATAAAAATG-AACTCACCTGGTATGCCTCACTATTATGCCTT
131 CCATCCTCGTCTCATATAAGTACATAAAAATGCAA-TCACCTGGTATGCCTCACTATTATGCCTT
1883230 AATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGAT
195 AATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGAT
*
1883295 TACGATCTACACAACCATCCATAATCATACAT-CTAAATATGATGCTAGTATACATACTAACACT
260 TACGATCTACACAACCATCCATAATCATACATAC-AAATATGATGTTAGTATACATACTAACACT
*
1883359 TATCTAAAGTAATAATAATCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTT
324 TATCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTT
1883424 AACATTTCAGACTGA
389 AACATTTCAGACTGA
1883439 TACCCACTTA
Statistics
Matches: 3022, Mismatches: 179, Indels: 48
0.93 0.06 0.01
Matches are distributed among these distances:
935 381 0.13
936 686 0.23
937 538 0.18
938 105 0.03
939 23 0.01
940 340 0.11
941 70 0.02
942 1 0.00
947 1 0.00
948 500 0.17
949 344 0.11
950 33 0.01
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (949 bp):
ATCTATTCATTTTATAGCAGTTCATACTCTGAAATTAGTCATAAAATCATTTCCATAACCATTAT
GAAATTATATCAAAATACTATAAATCATAATTTTATCAAAACATTTAAGGTTGATTCATCGTAAG
CCATCCTCGTCTCATATAAGTACATAAAAATGCAATCACCTGGTATGCCTCACTATTATGCCTTA
ATGTTGTCCAACTATTCGGCAACTTTATCCTTGCCCTTTTTCTTACTTGACTCAGGAGCTTGATT
ACGATCTACACAACCATCCATAATCATACATACAAATATGATGTTAGTATACATACTAACACTTA
TCTAAAGTAATAATACTCAAAAGTACTATAAATTTCAAATTCTATTAAAATTCATCTTAACTTAA
CATTTCAGACTGAATAGTATTGGTACCTATCCTACAGTATCGATACTTCTCTTCTATGGTACGGA
TACCCACTTCGGTATCGGTACCATTCTAGCATTCTGGAATTTCATTTTTTATTACGGTATCGATA
CCTTCCTCTTGGTATCGATACATACACCTCAGAATCGATACTTCTTTAAATCGGTATCGATACTG
TTCATCTGAATCCTCTAATTTAACCTTATAGTATCTACACTGTTCTTCCTGTCCCGATACCCTTA
CCCATATTTTACCTCTTTTACTTCGAATTTTACAAAAATTTCACCTAAATCTCTTACTCTTATCT
CCAACCATACCATTAAACTCATTATCACTTATCCAAGTTAACTTACATCCAAAAATCTCCTTATA
ACATCCAAAGAACACTCAAAACTAAGAATCACACCAAATTTTCAAACATGTTATTAAACACTTCT
AAGGCTTCCAATCTCTTATTTACTTCTTTGACAAGTCAAATATGCTTTTAAACTCCAATAATTGA
CAATATTTCATCAAATCACTTAAAAACCCATTTTATTAA
Found at i:1902557 original size:22 final size:22
Alignment explanation
Indices: 1902532--1902576 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
1902522 TCTCCAAGCT
1902532 TCCAAAATTATCAAATTTCACA
1 TCCAAAATTATCAAATTTCACA
1902554 TCCAAAATTATCAAATTTCACA
1 TCCAAAATTATCAAATTTCACA
1902576 T
1 T
1902577 TTTAACATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (22 bp):
TCCAAAATTATCAAATTTCACA
Found at i:1923446 original size:178 final size:177
Alignment explanation
Indices: 1923019--1923457 Score: 435
Period size: 178 Copynumber: 2.4 Consensus size: 177
1923009 CGACTTTATT
* * * *
1923019 TAACATTTTCATCTTTCAACTTCTTTTGTTACCTTAGATTTTTATTTTACCCATATGATAAACTC
1 TAACATTTTCACCTTTCAACTTCTTTTGTTACCGTAGATTTTTATTTTACACATATTATAAACTC
** * *
1923084 TGGTAACAATTCCAGTCACAGTCAGATTATTTAAGAAACTTTTAAATTCCTGGTCTCAACCTAAC
66 TACTAACAATT-C---CA-A-T-GGATTATTTAAGAAACTTTTAAATTCCTGATCTCAACCTAAC
* * * *
1923149 TTCTGAGTGACATGTAAGACTTTTAGGCGCATCTGGATTTATTAAAGGGATTCA
124 TTCTGAGAGACAGGTAAGAATTTTAGGCGCATCTGGATTTATTAAAGAGATTCA
* * * *
1923203 TAACATTTTCGCCTTTCAACTTCTTTTGTTGCCGTAGATTTTTATTTTACTCCTATTATAAACTC
1 TAACATTTTCACCTTTCAACTTCTTTTGTTACCGTAGATTTTTATTTTACACATATTATAAACTC
** * * *
1923268 TGGTAACAATTCCAATGGATTGATTTAAGCAACTTTTAAA-TCCTCGATCTCAACCTAATTTCTT
66 TACTAACAATTCCAATGGATT-ATTTAAGAAACTTTTAAATTCCT-GATCTCAACCTAACTTCTG
* * *
1923332 AGCAG-CCGGTAAGAATTTT-GGATGCATCTGGATTTGTTAAAGAGATT-A
129 AG-AGACAGGTAAGAATTTTAGG-CGCATCTGGATTTATTAAAGAGATTCA
* * *
1923380 TAACATTTTCACCTTTCAGCTTGC-TTTGTTACTGT-GCATATTTTCTTTTACACAT-TTGCA-A
1 TAACATTTTCACCTTTCAACTT-CTTTTGTTACCGTAG-AT-TTTTATTTTACACATATT--ATA
1923441 AACTCTACTAACAATTC
61 AACTCTACTAACAATTC
1923458 TAGCCAAAAC
Statistics
Matches: 218, Mismatches: 28, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
176 1 0.00
177 44 0.20
178 98 0.45
179 3 0.01
180 2 0.01
183 1 0.00
184 69 0.32
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (177 bp):
TAACATTTTCACCTTTCAACTTCTTTTGTTACCGTAGATTTTTATTTTACACATATTATAAACTC
TACTAACAATTCCAATGGATTATTTAAGAAACTTTTAAATTCCTGATCTCAACCTAACTTCTGAG
AGACAGGTAAGAATTTTAGGCGCATCTGGATTTATTAAAGAGATTCA
Found at i:1931040 original size:16 final size:16
Alignment explanation
Indices: 1931019--1931049 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1931009 TAATTAATTT
1931019 GGATCGACTTGTGTCC
1 GGATCGACTTGTGTCC
*
1931035 GGATCGATTTGTGTC
1 GGATCGACTTGTGTC
1931050 GTACACTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.19, G:0.32, T:0.35
Consensus pattern (16 bp):
GGATCGACTTGTGTCC
Found at i:1932934 original size:5 final size:5
Alignment explanation
Indices: 1932924--1932962 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
1932914 TTGAGGTGCA
* *
1932924 GGGGT GGGGT GGGGT GGGCT GGGGT GGGGT GGGCT GGGG
1 GGGGT GGGGT GGGGT GGGGT GGGGT GGGGT GGGGT GGGG
1932963 CGGGTTTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.05, G:0.77, T:0.18
Consensus pattern (5 bp):
GGGGT
Found at i:1932948 original size:15 final size:15
Alignment explanation
Indices: 1932928--1932962 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
1932918 GGTGCAGGGG
1932928 TGGGGTGGGGTGGGC
1 TGGGGTGGGGTGGGC
1932943 TGGGGTGGGGTGGGC
1 TGGGGTGGGGTGGGC
1932958 TGGGG
1 TGGGG
1932963 CGGGTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.06, G:0.74, T:0.20
Consensus pattern (15 bp):
TGGGGTGGGGTGGGC
Found at i:1933090 original size:25 final size:25
Alignment explanation
Indices: 1933059--1933111 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
1933049 ACAACCCGAA
1933059 CCCGTCCTGAATTTTAGACTAAAAC
1 CCCGTCCTGAATTTTAGACTAAAAC
*
1933084 CCCGTCCTGAATTTTAGTCTAAAAC
1 CCCGTCCTGAATTTTAGACTAAAAC
1933109 CCC
1 CCC
1933112 AACCTGACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.28
Consensus pattern (25 bp):
CCCGTCCTGAATTTTAGACTAAAAC
Found at i:1933117 original size:25 final size:25
Alignment explanation
Indices: 1933064--1933118 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
1933054 CCGAACCCGT
**
1933064 CCTGAATTTTAGACTAAAACCCCGT
1 CCTGAATTTTAGACTAAAACCCCAA
*
1933089 CCTGAATTTTAGTCTAAAACCCCAA
1 CCTGAATTTTAGACTAAAACCCCAA
1933114 CCTGA
1 CCTGA
1933119 CCTAACCCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (25 bp):
CCTGAATTTTAGACTAAAACCCCAA
Found at i:1933279 original size:21 final size:21
Alignment explanation
Indices: 1933236--1933279 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1933226 ATAATATTTT
*
1933236 TATATTTTAATAATTAAATAA
1 TATATTTTAATAATTAAAAAA
1933257 TATATTTTAAT-ATTATAAAAA
1 TATATTTTAATAATTA-AAAAA
1933278 TA
1 TA
1933280 AAAATTCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TATATTTTAATAATTAAAAAA
Found at i:1933328 original size:4 final size:4
Alignment explanation
Indices: 1933309--1933361 Score: 65
Period size: 4 Copynumber: 13.8 Consensus size: 4
1933299 ATATAATATA
* * *
1933309 ATAG ATAG --AG AGAG ATAG ATAG ATAG ATAT ATAG ATAG ATAA ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1933355 ATAG ATA
1 ATAG ATA
1933362 TAGATATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
2 2 0.05
4 40 0.95
ACGTcount: A:0.53, C:0.00, G:0.23, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:1936719 original size:2 final size:2
Alignment explanation
Indices: 1936712--1936742 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1936702 TAAATTATCT
1936712 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1936743 CTTGCTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1939095 original size:20 final size:20
Alignment explanation
Indices: 1939052--1939095 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1939042 TGTTTTTAAT
*
1939052 AAATTTTTATCTATAAAATT
1 AAATTTTTATCTATAAAATA
*
1939072 AAATTTTTAT-TTTCAAAATA
1 AAATTTTTATCTAT-AAAATA
1939092 AAAT
1 AAAT
1939096 ATTAAAAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (20 bp):
AAATTTTTATCTATAAAATA
Done.