genome.fa.s7722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007722.1 Hibiscus syriacus cultivar Beakdansim tig00109958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  237237

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479--533	19	2.8	19	83	2	74	47	21	18	12	1.82
539--721	19	10.1	19	74	16	147	12	22	21	43	1.85
539--628	39	2.3	38	92	1	144	12	20	21	46	1.82
562--639	39	2.0	39	87	5	113	8	19	26	44	1.80
601--697	33	2.9	33	86	4	133	10	23	25	40	1.86
665--721	20	2.9	19	78	17	62	14	24	19	42	1.88
4151--4185	14	2.6	14	90	4	54	28	0	25	45	1.54
4138--4186	14	3.7	14	76	10	50	26	0	22	51	1.49
4359--4518	33	5.1	31	81	12	184	16	22	20	41	1.90
4427--4518	19	5.4	19	61	24	60	17	19	18	44	1.87
4364--4517	66	2.4	63	90	5	231	16	22	20	40	1.90
6804--6828	12	2.1	12	100	0	50	0	28	0	72	0.86
7010--7054	23	2.0	23	90	0	72	31	22	20	26	1.98
8110--8187	20	3.9	20	96	0	138	37	23	23	16	1.94
8210--8263	14	3.5	14	77	22	63	11	20	20	48	1.80
8205--8282	33	2.4	33	91	0	120	12	23	21	42	1.87
10270--10336	19	3.5	19	83	4	89	37	23	23	14	1.93
10325--10382	14	3.9	14	79	16	71	48	25	17	8	1.75
10309--10387	32	2.4	33	95	2	142	46	24	18	10	1.80
10394--10489	19	5.7	16	71	22	65	11	18	22	46	1.81
10416--10473	14	3.9	14	79	16	71	8	17	25	48	1.75
10399--10489	32	2.8	33	93	3	157	10	17	23	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10483--10526	20	2.2	20	87	0	61	15	20	22	40	1.90
11001--11045	18	2.5	18	85	0	63	15	15	42	26	1.87
12360--12397	20	1.9	20	88	0	58	50	21	15	13	1.78
12661--12704	22	2.0	22	95	0	79	18	15	45	20	1.85
12889--12982	20	4.7	20	80	2	89	23	18	24	34	1.96
12869--12983	20	5.7	20	78	5	88	23	17	23	35	1.95
12911--13041	41	3.2	41	80	4	122	19	21	20	38	1.94
12972--13064	20	4.6	20	75	4	87	18	23	18	39	1.92
12972--13067	41	2.3	41	96	0	174	18	22	17	40	1.91
13408--13438	14	2.3	13	94	5	53	25	0	19	54	1.44
14448--14495	2	25.0	2	84	16	66	47	2	0	50	1.12
18715--18760	19	2.6	18	86	6	58	13	2	13	71	1.23
20844--20874	2	15.5	2	100	0	62	51	0	0	48	1.00
21242--21313	35	2.1	35	97	0	135	33	6	19	40	1.78
26002--26046	21	2.2	20	88	11	65	37	6	8	46	1.61
26013--26057	21	2.1	21	92	8	74	28	11	8	51	1.68
33083--33151	34	2.0	36	91	5	115	39	13	8	39	1.75
54406--54482	39	2.0	39	92	0	127	24	19	31	24	1.98
61836--62049	68	3.1	68	89	3	324	39	10	24	25	1.88
63566--63611	20	2.1	23	88	11	71	47	6	8	36	1.60
66108--66146	19	2.1	19	85	0	51	53	17	10	17	1.71
66850--66986	47	2.9	47	94	0	229	35	21	23	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75023--75355	111	3.0	111	94	1	578	44	10	8	36	1.69
78794--78831	17	2.3	17	95	4	69	60	10	0	28	1.30
81716--81782	24	2.8	24	81	2	82	46	14	14	23	1.83
81765--81848	41	2.0	41	83	0	105	54	21	9	14	1.68
94174--94265	42	2.2	42	86	7	125	28	18	18	34	1.95
98075--98099	12	2.1	12	100	0	50	20	16	24	40	1.91
102647--102671	12	2.1	12	100	0	50	20	16	24	40	1.91
108283--108327	21	2.1	21	84	8	56	60	0	6	33	1.23
111121--111165	18	2.5	18	96	0	81	46	20	24	8	1.78
124108--124171	28	2.3	29	81	8	78	39	20	3	37	1.68
133753--133802	23	2.3	22	89	6	75	62	0	6	32	1.20
133886--133932	18	2.7	18	93	3	78	31	8	31	27	1.87
134312--134820	257	2.0	248	86	8	713	41	19	11	27	1.86
134312--134880	257	2.2	255	81	12	696	41	19	11	26	1.86
137268--137324	29	1.9	30	82	3	71	47	7	1	43	1.40
140945--140979	18	2.0	17	88	5	52	17	20	34	28	1.95
143413--143451	19	2.1	19	85	9	53	53	10	7	28	1.62
145131--145164	17	2.0	17	88	0	50	47	14	14	23	1.82
150932--150970	18	2.1	19	85	4	53	41	5	2	51	1.38
151930--151973	20	2.2	20	87	0	61	38	29	11	20	1.87
152522--152554	14	2.5	13	90	9	50	51	6	3	39	1.42
153917--154011	31	3.0	31	90	6	147	37	24	18	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154663--154885	64	3.5	63	75	7	191	27	20	20	31	1.97
156808--156977	36	4.9	36	68	17	108	38	14	15	31	1.88
156764--157139	102	3.7	102	86	4	457	37	13	17	32	1.88
157039--157179	30	4.5	30	74	13	122	39	12	18	30	1.87
157099--157225	36	3.7	35	72	17	122	38	12	19	29	1.89
157069--157210	66	2.2	66	94	0	248	39	11	19	29	1.87
159342--159455	7	15.9	7	69	15	56	4	16	0	78	0.97
159336--159467	8	16.9	8	73	13	69	5	15	0	78	0.98
159397--159456	23	2.6	23	81	0	75	0	20	0	80	0.72
159341--159467	23	5.7	22	66	12	64	4	16	0	77	0.97
164775--164815	14	3.1	14	82	6	50	73	7	0	19	1.07
176104--176136	3	11.0	3	100	0	66	33	0	0	66	0.92
176166--176199	3	10.7	3	90	6	50	32	0	2	64	1.08
176105--176230	63	2.0	61	90	3	198	38	3	4	53	1.38
176408--176468	31	2.0	31	90	0	95	26	18	11	44	1.83
178077--178282	104	2.0	103	83	3	261	37	16	18	27	1.92
193787--193848	21	3.2	21	63	25	55	33	4	19	41	1.72
193779--193898	36	3.3	36	92	3	188	33	5	18	43	1.72
203419--203585	90	1.9	90	97	0	316	34	11	6	46	1.67
203558--203627	20	3.3	20	76	23	72	50	1	1	47	1.19
203558--203627	22	3.3	21	77	16	72	50	1	1	47	1.19
205644--205678	18	1.9	18	88	0	52	51	17	14	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215074--215124	23	2.2	23	96	0	93	43	17	9	29	1.81
218286--218361	36	2.1	36	85	7	100	47	1	3	47	1.29
218721--218749	4	7.2	4	100	0	58	75	0	0	24	0.80
227396--227447	24	2.2	24	92	0	86	51	13	11	23	1.73
229116--229145	10	3.0	10	95	0	51	26	0	0	73	0.84
230975--231059	43	2.0	43	95	0	152	27	20	20	32	1.97
231066--231093	11	2.5	11	100	0	56	39	0	28	32	1.57

Tables:   1

The End!