genome.fa.s7723.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007723.1 Hibiscus syriacus cultivar Beakdansim tig00109960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  249863

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9932--10016	43	2.0	43	95	0	152	27	20	20	32	1.97
10023--10050	11	2.5	11	100	0	56	39	0	28	32	1.57
15732--15861	69	1.9	69	80	6	156	25	19	21	33	1.97
18390--18436	23	2.0	23	100	0	94	38	17	19	25	1.92
32289--32356	27	2.6	27	93	4	113	30	10	16	42	1.81
34811--34878	27	2.6	27	93	4	113	30	10	17	41	1.83
41458--41520	24	2.7	23	78	7	63	9	31	33	25	1.88
43098--43143	22	2.0	22	84	12	58	21	2	13	63	1.40
43502--43551	22	2.3	21	82	3	55	48	12	2	38	1.52
51422--51460	19	2.0	20	85	14	55	41	5	25	28	1.77
61412--61572	30	5.4	31	70	14	92	58	11	14	15	1.63
64545--65214	336	2.0	335	98	0	1288	38	17	15	28	1.90
71637--71745	51	2.1	51	98	0	209	19	22	25	32	1.97
72086--72126	21	2.0	21	95	0	73	0	17	51	31	1.46
72750--72783	17	2.0	17	88	0	50	32	2	8	55	1.45
77369--77414	7	6.7	7	97	2	85	28	0	56	15	1.39
77369--77423	21	2.6	21	91	5	85	27	0	54	18	1.44
77547--77573	14	1.9	14	100	0	54	29	0	18	51	1.46
78102--78146	13	3.5	13	82	11	65	48	11	6	33	1.65
78429--78603	94	1.9	94	86	6	255	38	9	8	44	1.66
79705--79749	13	3.5	13	82	11	56	51	11	4	33	1.58
81527--81595	36	1.9	36	90	0	111	37	5	14	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89212--89273	29	2.2	29	91	2	99	17	19	11	51	1.75
89212--89290	29	2.7	29	84	7	81	20	16	8	54	1.68
89250--89362	43	2.6	42	78	13	106	28	12	6	53	1.62
89343--89663	44	7.4	44	77	6	253	23	20	7	48	1.74
89998--90051	21	2.5	22	75	9	56	37	3	5	53	1.42
90991--91042	24	2.2	23	83	6	68	46	21	11	21	1.82
95018--95128	57	1.9	57	92	0	186	41	9	17	32	1.80
95472--95509	19	2.0	19	85	10	51	18	18	15	47	1.83
97519--97583	29	2.2	29	83	0	76	27	6	18	47	1.72
99633--99695	5	12.6	5	100	0	126	20	0	20	58	1.39
101992--102019	14	2.0	14	100	0	56	28	7	42	21	1.79
104089--104161	17	4.0	17	80	16	92	39	10	13	35	1.80
104089--104185	39	2.3	43	87	6	139	36	12	15	36	1.85
104142--104203	26	2.5	25	86	5	90	37	16	16	30	1.90
115171--115286	35	3.2	35	64	21	94	51	6	3	37	1.46
115169--115289	41	3.1	41	62	22	107	52	6	3	37	1.44
115169--115317	74	2.0	74	98	0	289	51	5	2	40	1.39
129984--130106	13	9.4	13	73	14	69	60	0	1	37	1.12
129987--130076	3	29.7	3	71	22	55	60	1	1	37	1.12
129987--130106	16	7.9	16	68	23	64	60	0	1	36	1.12
129986--130080	48	2.0	48	86	10	133	60	1	1	37	1.11
129975--130451	161	3.0	161	89	4	732	56	1	3	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130154--130244	16	5.9	15	76	17	71	61	1	1	36	1.10
130147--130220	18	4.4	18	77	16	63	62	1	0	36	1.04
130153--130232	40	2.0	40	83	13	103	62	1	0	36	1.03
130357--130403	14	3.3	14	80	13	51	63	2	2	31	1.18
140826--140850	13	1.9	13	100	0	50	16	48	16	20	1.82
143289--143371	24	3.5	24	78	6	87	19	18	18	44	1.87
143303--143382	24	3.3	24	80	3	90	21	15	17	46	1.84
145466--145504	18	2.2	18	100	0	78	17	51	20	10	1.74
146872--146993	24	5.1	23	80	13	113	40	18	14	26	1.89
146917--147011	48	2.0	48	81	8	113	43	15	15	25	1.87
149470--149509	18	2.2	18	95	0	71	12	20	50	17	1.78
149487--149518	13	2.5	13	94	0	55	15	21	46	15	1.83
150390--150462	36	2.0	36	97	0	137	42	8	20	28	1.81
152112--152169	12	4.8	12	82	0	71	13	15	18	51	1.76
154746--154822	21	3.8	21	67	21	56	29	1	10	58	1.39
155534--155582	18	2.6	18	81	15	55	22	10	0	67	1.20
155539--155603	18	3.6	17	76	15	60	23	7	0	69	1.14
168022--168064	3	14.3	3	90	9	70	34	0	65	0	0.93
168010--168054	21	2.1	21	87	0	63	44	0	55	0	0.99
170826--170854	13	2.2	13	100	0	58	6	62	31	0	1.22
171118--171144	14	1.9	14	100	0	54	0	7	3	88	0.61
171103--171151	18	2.5	20	78	18	59	0	16	6	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171535--171693	3	51.7	3	90	5	246	62	1	0	35	1.08
172012--172786	113	6.9	113	96	1	1407	29	18	14	37	1.91
172012--172786	336	2.3	339	95	1	1407	29	18	14	37	1.91
183476--183517	13	3.2	13	100	0	84	7	61	30	0	1.22
183772--183813	16	2.6	16	88	3	57	0	19	7	73	1.05
183779--183813	16	2.2	16	94	0	61	0	14	8	77	0.99
183772--183808	16	2.2	17	90	4	58	0	18	8	72	1.08
184207--184371	3	54.3	3	92	2	276	64	1	0	33	1.06
187596--187690	21	4.6	20	81	7	93	36	22	21	20	1.95
187596--187669	21	3.5	20	85	5	94	36	22	21	18	1.95
188707--188811	44	2.4	44	77	7	115	20	20	32	27	1.97
196912--196936	12	2.1	12	100	0	50	32	0	24	44	1.54
196942--197026	31	2.7	30	79	13	100	40	3	11	44	1.58
199228--199325	21	4.8	20	76	6	79	37	22	18	21	1.94
199228--199325	42	2.4	41	75	14	103	37	22	18	21	1.94
199292--199485	20	9.6	20	80	5	212	35	25	19	19	1.95
199292--199485	60	3.2	60	82	0	244	35	25	19	19	1.95
199868--199938	33	2.2	33	89	5	108	11	23	18	46	1.81
200017--200094	41	1.9	41	97	0	147	44	16	25	12	1.83
200018--200093	21	3.7	21	83	3	109	46	17	25	11	1.82
201881--202256	93	4.1	93	99	0	736	22	12	19	46	1.83
202304--202432	19	7.3	19	75	17	125	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202340--202432	33	2.8	32	91	4	150	46	27	18	7	1.76
202304--202432	52	2.5	52	74	14	140	45	28	17	8	1.77
202428--202547	19	6.6	19	78	11	117	11	19	23	45	1.82
202954--202994	21	2.0	21	85	0	55	26	34	14	24	1.94
204474--204505	14	2.3	14	94	0	55	34	0	21	43	1.53
204612--204709	19	5.4	19	84	13	143	45	17	22	14	1.84
204612--204727	53	2.2	53	98	1	225	43	18	24	13	1.86
204756--204970	19	12.4	19	75	21	231	13	20	18	46	1.83
204734--204942	52	4.0	52	95	3	386	13	22	17	46	1.83
204734--204942	102	2.0	105	96	2	388	13	22	17	46	1.83
204775--204984	33	6.2	33	75	17	209	13	21	18	46	1.83
207467--207513	24	2.0	24	87	8	69	38	21	14	25	1.92
208195--208404	20	10.5	20	84	5	228	20	18	25	36	1.95
208372--208425	20	2.7	19	85	5	63	9	18	27	44	1.80
216314--216392	40	2.0	40	92	2	133	32	29	10	27	1.89
222198--222226	14	2.0	15	93	6	51	37	0	0	62	0.96
226252--226281	15	2.0	15	93	0	51	16	46	23	13	1.82
231210--231239	15	2.0	15	93	0	51	16	46	23	13	1.82
236161--236190	15	2.0	15	93	0	51	16	46	23	13	1.82
241104--241133	15	2.0	15	100	0	60	13	46	26	13	1.80
242679--242832	65	2.4	65	96	0	281	43	17	2	36	1.63
243040--243069	6	4.8	6	95	4	51	33	16	0	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244665--244721	28	2.1	28	90	3	89	38	14	19	28	1.90
249131--249175	21	2.1	21	87	0	63	31	28	24	15	1.96

Tables:   1

The End!