Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007725.1 Hibiscus syriacus cultivar Beakdansim tig00109972_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3026330
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 14
Found at i:416688 original size:26 final size:23
Alignment explanation
Indices: 416661--416749 Score: 92
Period size: 26 Copynumber: 3.7 Consensus size: 23
416651 TTTTTATTAT
416661 TTTTATTATATTATTATTAGTATCA
1 TTTTATTATATTATTATTA-TAT-A
*
416686 TTTTATTTATACTATTATTAT-TA
1 TTTTA-TTATATTATTATTATATA
416709 TTTTATTAT-TTATTTATTATATTA
1 TTTTATTATATTA-TTATTATA-TA
*
416733 TATTATTATTATTATTA
1 TTTTATTA-TATTATTA
416750 ATAAAAAATA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
21 2 0.04
22 11 0.20
23 6 0.11
24 10 0.18
25 10 0.18
26 16 0.29
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (23 bp):
TTTTATTATATTATTATTATATA
Found at i:416709 original size:14 final size:14
Alignment explanation
Indices: 416655--416747 Score: 92
Period size: 14 Copynumber: 7.1 Consensus size: 14
416645 ATTTGTTTTT
*
416655 TATTATTTTTATTA
1 TATTATTATTATTA
*
416669 TATTATTATTAGTA
1 TATTATTATTATTA
416683 TCATT-TTA-T-TTA
1 T-ATTATTATTATTA
*
416695 TACTATTATTATTA
1 TATTATTATTATTA
*
416709 TTTTATTA-T-TTA
1 TATTATTATTATTA
416721 T-TTATTA-TATTA
1 TATTATTATTATTA
416733 TATTATTATTATTA
1 TATTATTATTATTA
416747 T
1 T
416748 TAATAAAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
11 9 0.14
12 14 0.21
13 9 0.14
14 31 0.47
15 3 0.05
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (14 bp):
TATTATTATTATTA
Found at i:416765 original size:3 final size:3
Alignment explanation
Indices: 416654--416749 Score: 87
Period size: 3 Copynumber: 33.0 Consensus size: 3
416644 TATTTGTTTT
* * *
416654 TTA TTA TTT TTA TTA -TA TTA TTA TTA GTA TCA TT- TTA TT- TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
*
416697 CTA TTA TTA TTA TT- TTA TTA TTTA TTTA TTA -TA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA
416741 TTA TTA TTA
1 TTA TTA TTA
416750 ATAAAAAATA
Statistics
Matches: 77, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
2 11 0.14
3 59 0.77
4 7 0.09
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:420078 original size:304 final size:306
Alignment explanation
Indices: 419484--420093 Score: 1101
Period size: 304 Copynumber: 2.0 Consensus size: 306
419474 CTTGGTGTAT
419484 AGACGTGTCCCTATAAACTGTAACTTCAAAATAACGTGTTGTGATTTGTCATTTGGTTTTGGATG
1 AGACGTGTCCCTATAAACTGTAACTTCAAAATAACGTGTTGTGATTTGTCATTTGGTTTTGGATG
419549 TATGTATTGGCAAATTGTGCATCCATCATCACATTCAGATTGTGCATTGTACACTTGGTTTAGGC
66 TATGTATTGGCAAATTGTGCATCCATCATCACATTCAGATTGTGCATTGTACACTTGGTTTAGGC
419614 TTGTTAATAAAGGAGCTTACGGTTTTAAGCGATGGGAAAAATGTGTTTTCTCATTTACATGTATT
131 TTGTTAATAAAGGAGCTTACGGTTTTAAGCGATGGGAAAAATGTGTTTTCTCATTTACATGTATT
419679 GTTTTGGTCAAAATATGCTTCAAGTTCATGTGTTTTTATAAATTTGAAATCTAGTCCCTGTAGTT
196 GTTTTGGTCAAAATATGCTTCAAGTTCATGTGTTTTTATAAATTTGAAATCTAGTCCCTGTAGTT
419744 TTTAGATTTAAAATTCAACTTCAATTGTTAGTACCTTACCGCTGAA
261 TTTAGATTTAAAATTCAACTTCAATTGTTAGTACCTTACCGCTGAA
419790 AGACGTGT-CCTATAAACTTGTAACTTCAAAATAACGTGTTGTTGATTTGTCATTTGGTTTTGGA
1 AGACGTGTCCCTATAAAC-TGTAACTTCAAAATAACGTGTTG-TGATTTGTCATTTGGTTTTGGA
419854 TGTATGTATTGGCAAATTGTGCATACCATCATCACATTCAGA-TGTGCATTGTACA-TTGGTTTA
64 TGTATGTATTGGCAAATTGTGCAT-CCATCATCACATTCAGATTGTGCATTGTACACTTGGTTTA
419917 GGCTTGTTAA-ATAAGGAGCTTACGGTGTTTAAGCGAT-GG-AAAATGTGTTTT-TCATTTACAT
128 GGCTTGTTAATA-AAGGAGCTTACGGT-TTTAAGCGATGGGAAAAATGTGTTTTCTCATTTACAT
419978 GTATTGTTTTGGTCAAAATATGCTTCAAGTTCATGTGTTTTTAT-AATTTGAAATCTAGTCCCTG
191 GTATTGTTTTGGTCAAAATATGCTTCAAGTTCATGTGTTTTTATAAATTTGAAATCTAGTCCCTG
*
420042 TAGTTTTTAGATTTTAAATTCAAACTTCAATTGTTAGTACCTTACCGCTGAA
256 TAGTTTTTAGATTTAAAATTC-AACTTCAATTGTTAGTACCTTACCGCTGAA
420094 GGTAATGTTT
Statistics
Matches: 297, Mismatches: 1, Indels: 14
0.95 0.00 0.04
Matches are distributed among these distances:
303 40 0.13
304 84 0.28
305 22 0.07
306 65 0.22
307 69 0.23
308 17 0.06
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (306 bp):
AGACGTGTCCCTATAAACTGTAACTTCAAAATAACGTGTTGTGATTTGTCATTTGGTTTTGGATG
TATGTATTGGCAAATTGTGCATCCATCATCACATTCAGATTGTGCATTGTACACTTGGTTTAGGC
TTGTTAATAAAGGAGCTTACGGTTTTAAGCGATGGGAAAAATGTGTTTTCTCATTTACATGTATT
GTTTTGGTCAAAATATGCTTCAAGTTCATGTGTTTTTATAAATTTGAAATCTAGTCCCTGTAGTT
TTTAGATTTAAAATTCAACTTCAATTGTTAGTACCTTACCGCTGAA
Found at i:422445 original size:20 final size:23
Alignment explanation
Indices: 422400--422442 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
422390 AATCATTTAT
422400 TTTATTTATGATATCATCATAAAG
1 TTTATTTATGATATCATCA-AAAG
422424 TTTATTTAT-AT-TCATCAAA
1 TTTATTTATGATATCATCAAA
422443 GTTAAATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 2 0.11
22 6 0.32
23 2 0.11
24 9 0.47
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.49
Consensus pattern (23 bp):
TTTATTTATGATATCATCAAAAG
Found at i:423767 original size:13 final size:13
Alignment explanation
Indices: 423739--423773 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
423729 CCAAATTTAA
*
423739 AAAATACATTAATT
1 AAAATA-ATGAATT
423753 AAAATAATGAATT
1 AAAATAATGAATT
423766 AAAATAAT
1 AAAATAAT
423774 CCAAAGATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (13 bp):
AAAATAATGAATT
Found at i:427131 original size:2 final size:2
Alignment explanation
Indices: 427124--427152 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
427114 ACCCATTTAG
427124 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
427153 TTATTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:430525 original size:14 final size:15
Alignment explanation
Indices: 430429--430531 Score: 118
Period size: 15 Copynumber: 6.5 Consensus size: 15
430419 TAATAAGGTT
430429 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
430444 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
430459 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
430474 ATTTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
430493 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
430511 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
430525 ATTTATT
1 ATTTATT
430532 AGTATGTATT
Statistics
Matches: 77, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
14 12 0.16
15 44 0.57
16 4 0.05
17 2 0.03
18 1 0.01
19 1 0.01
20 2 0.03
21 4 0.05
22 7 0.09
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:430549 original size:32 final size:31
Alignment explanation
Indices: 430511--431185 Score: 433
Period size: 32 Copynumber: 24.7 Consensus size: 31
430501 TTTTAAAATA
430511 ATTTATTTTAAATAATTTATTAGTATGTATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
430543 ATTTATTTT--A-AA---A-TA-TA-GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
430565 ATTTATTTTAAA-A------TA-TA-GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
430587 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
430619 ATTTATTTTAAA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
*
430642 ATTTATTTTAAATAATTTATTAGTATTGATTA
1 ATTTATTTTAAATAATTTATTAGTA-TGATTG
430674 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
430706 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
430728 ATTTATTTTAAA------A-TA-TA-GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
430750 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
* * * *
430782 ATTGA-TCT--AT--TTTA-AAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
430808 ATTTATTTT--A-AA---A-TA-TA-GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
430830 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
430862 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
430894 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
430916 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
*
430948 ATTTATATT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
*
430970 ATTTATTTTAAATAATATATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
431002 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
431024 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
431056 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
*
431078 ATTTATTTTAAATAATTTATTAGTATATATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
431110 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
431132 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
431164 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
431186 TTGTAGTTGT
Statistics
Matches: 530, Mismatches: 13, Indels: 200
0.71 0.02 0.27
Matches are distributed among these distances:
20 2 0.00
22 145 0.27
23 33 0.06
24 19 0.04
25 6 0.01
26 33 0.06
27 20 0.04
28 21 0.04
29 12 0.02
30 19 0.04
31 20 0.04
32 200 0.38
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (31 bp):
ATTTATTTTAAATAATTTATTAGTATGATTG
Found at i:430551 original size:47 final size:51
Alignment explanation
Indices: 430444--430557 Score: 164
Period size: 47 Copynumber: 2.3 Consensus size: 51
430434 TTTTAAAATA
*
430444 ATTTATTATAAAATAATTTATTTTAAAATAATTTATTATAAAATATGGATTG
1 ATTTATTTTAAAATAATTTATTTTAAAATAATTTATTAT-AAATATGGATTG
* *
430496 ATTTATTTTAAAATAATTTATTTT-AAATAATTTA-T-T-AGTATGTATTG
1 ATTTATTTTAAAATAATTTATTTTAAAATAATTTATTATAAATATGGATTG
430543 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
430558 TAGATTGATT
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
47 24 0.41
49 1 0.02
50 1 0.02
51 10 0.17
52 23 0.39
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (51 bp):
ATTTATTTTAAAATAATTTATTTTAAAATAATTTATTATAAATATGGATTG
Found at i:430564 original size:22 final size:22
Alignment explanation
Indices: 430539--430598 Score: 120
Period size: 22 Copynumber: 2.7 Consensus size: 22
430529 ATTAGTATGT
430539 ATTGATTTATTTTAAAATATAG
1 ATTGATTTATTTTAAAATATAG
430561 ATTGATTTATTTTAAAATATAG
1 ATTGATTTATTTTAAAATATAG
430583 ATTGATTTATTTTAAA
1 ATTGATTTATTTTAAA
430599 TAATTTATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (22 bp):
ATTGATTTATTTTAAAATATAG
Found at i:430618 original size:54 final size:54
Alignment explanation
Indices: 430560--431175 Score: 831
Period size: 54 Copynumber: 11.3 Consensus size: 54
430550 TTAAAATATA
*
430560 GATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
*
430614 GATTGATTTATTTTAAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATT
1 GATTGATTTATTTT-AAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
* * * * * * *
430669 GATTAATTTATTTT-AAATA---ATTTA-TTAGTATGAATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATGGATTGATTTA-TTTTAAATAATTTA--TT--AGTATG
*
430723 GATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
*
430777 GATTGATTGATCTATTTTAAAATATGGATTGATTTATTTT-AA-AA--TA-TAG-ATT
1 GATTGA-T--T-TATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
* * *
430829 GATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGA-TTT--AT--TTTA-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
*
430889 AATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
* *
430943 GATTGATTTATATTAAAATATGGATTGATTTATTTTAAATAATATATTAGTATG
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
430997 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
*
431051 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATA
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
*
431105 TATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
*
431159 AATTGATTTATTTTAAA
1 GATTGATTTATTTTAAA
431176 TAATTTATTA
Statistics
Matches: 500, Mismatches: 36, Indels: 52
0.85 0.06 0.09
Matches are distributed among these distances:
49 4 0.01
50 15 0.03
51 2 0.00
52 11 0.02
53 12 0.02
54 324 0.65
55 63 0.13
56 6 0.01
57 5 0.01
58 43 0.09
59 9 0.02
60 6 0.01
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (54 bp):
GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG
Found at i:430661 original size:14 final size:14
Alignment explanation
Indices: 430642--430694 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
430632 ATATGGATTG
430642 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
430656 ATTTATTAGTATTGATTA
1 ATTTA-T--T-TTAAATA
430674 ATTTATTTTAAATA
1 ATTTATTTTAAATA
430688 ATTTATT
1 ATTTATT
430695 AGTATGAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 17 0.55
15 2 0.06
17 2 0.06
18 10 0.32
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:430713 original size:22 final size:22
Alignment explanation
Indices: 430697--430761 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
430687 AATTTATTAG
430697 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
430719 TATGGATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
430741 TAT-AGATTGATTTATTTTAAA
1 TATGA-ATTGATTTATTTTAAA
430762 TAATTTATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:430748 original size:18 final size:20
Alignment explanation
Indices: 430704--430841 Score: 92
Period size: 22 Copynumber: 6.7 Consensus size: 20
430694 TAGTATGAAT
430704 TGATTTATTTTAAAATATGGA
1 TGATTTATTTTAAAATAT-GA
430725 TTGATTTATTTTAAAATATAGA
1 -TGATTTATTTTAAAATAT-GA
430747 TTGATTTATTTT--AA-AT-A
1 -TGATTTATTTTAAAATATGA
* **
430764 --ATTTATTAGTATGGAT-TGA
1 TGATTTATT-TTA-AAATATGA
*
430783 TTGATCTATTTTAAAATATGGA
1 -TGATTTATTTTAAAATAT-GA
430805 TTGATTTATTTTAAAATATAGA
1 -TGATTTATTTTAAAATAT-GA
430827 TTGATTTATTTTAAA
1 -TGATTTATTTTAAA
430842 TAATTTATTA
Statistics
Matches: 96, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.07
15 1 0.01
17 1 0.01
18 2 0.02
19 3 0.03
20 4 0.04
21 3 0.03
22 75 0.78
ACGTcount: A:0.37, C:0.01, G:0.12, T:0.51
Consensus pattern (20 bp):
TGATTTATTTTAAAATATGA
Found at i:430806 original size:22 final size:22
Alignment explanation
Indices: 430781--430841 Score: 104
Period size: 22 Copynumber: 2.8 Consensus size: 22
430771 AGTATGGATT
* *
430781 GATTGATCTATTTTAAAATATG
1 GATTGATTTATTTTAAAATATA
430803 GATTGATTTATTTTAAAATATA
1 GATTGATTTATTTTAAAATATA
430825 GATTGATTTATTTTAAA
1 GATTGATTTATTTTAAA
430842 TAATTTATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (22 bp):
GATTGATTTATTTTAAAATATA
Found at i:430910 original size:22 final size:22
Alignment explanation
Indices: 430885--430927 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
430875 AATTTATTAG
430885 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
430907 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
430928 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:430965 original size:22 final size:22
Alignment explanation
Indices: 430939--430981 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
430929 AATTTATTAG
430939 TATGGATTGATTTATATTAAAA
1 TATGGATTGATTTATATTAAAA
*
430961 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATATTAAA
430982 TAATATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (22 bp):
TATGGATTGATTTATATTAAAA
Found at i:431021 original size:22 final size:22
Alignment explanation
Indices: 430993--431035 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
430983 AATATATTAG
430993 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
431015 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
431036 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:431072 original size:22 final size:22
Alignment explanation
Indices: 431047--431089 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
431037 AATTTATTAG
431047 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
431069 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
431090 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:431151 original size:14 final size:14
Alignment explanation
Indices: 431132--431184 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
431122 ATATGGATTG
431132 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
431146 ATTTATTAGTATGAATTG
1 ATTTATT--T-T-AAATA
431164 ATTTATTTTAAATA
1 ATTTATTTTAAATA
431178 ATTTATT
1 ATTTATT
431185 ATTGTAGTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 17 0.55
15 1 0.03
16 2 0.06
17 1 0.03
18 10 0.32
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.57
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:431235 original size:31 final size:31
Alignment explanation
Indices: 431200--431258 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
431190 AGTTGTATGG
*
431200 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGTAAAACTAAA
431231 ATTATTTAAATCTCAGTATTGTAAAACT
1 ATTATTTAAATCTCAGTATTGTAAAACT
431259 CTTTTAAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGTAAAACTAAA
Found at i:432328 original size:14 final size:14
Alignment explanation
Indices: 432309--432360 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
432299 AAATATTTTT
432309 TTTAAATATTTAAA
1 TTTAAATATTTAAA
* *
432323 TTTAAATAATTATA
1 TTTAAATATTTAAA
432337 TTAATAATATATTTAAA
1 TT--TAA-ATATTTAAA
*
432354 TTCAAAT
1 TTTAAAT
432361 TATCAAGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
14 16 0.53
15 2 0.07
16 3 0.10
17 9 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (14 bp):
TTTAAATATTTAAA
Found at i:434193 original size:20 final size:19
Alignment explanation
Indices: 434156--434194 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
434146 ATATATTTTA
*
434156 TTACTTTAAATAATTAAAT
1 TTACTTTAAATAAATAAAT
*
434175 TTACTATTACATAAATAAAT
1 TTACT-TTAAATAAATAAAT
434195 CATAGAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (19 bp):
TTACTTTAAATAAATAAAT
Found at i:434556 original size:28 final size:28
Alignment explanation
Indices: 434524--434597 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 28
434514 GTTATGAAGT
*
434524 TATAAAAATTAAGGGCCCTAGTTATAAA
1 TATAAAAATTAAGGGCCCTAATTATAAA
* **
434552 TATAAAAATTTGAGAACCCTAATTATAAA
1 TATAAAAA-TTAAGGGCCCTAATTATAAA
* *
434581 TAAAAAAATTAGGGGCC
1 TATAAAAATTAAGGGCC
434598 TTGAGAGGTT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
28 13 0.36
29 23 0.64
ACGTcount: A:0.49, C:0.11, G:0.14, T:0.27
Consensus pattern (28 bp):
TATAAAAATTAAGGGCCCTAATTATAAA
Found at i:439985 original size:19 final size:20
Alignment explanation
Indices: 439961--440010 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
439951 GATAAATTTA
*
439961 TTAATAATTTTATAA-TCTT
1 TTAATAATTTTATAAGTATT
*
439980 TTAATAAATTTAATAAGTATT
1 TTAAT-AATTTTATAAGTATT
440001 TT-ATAATTTT
1 TTAATAATTTT
440011 TTAAACGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 10 0.38
20 11 0.42
21 5 0.19
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (20 bp):
TTAATAATTTTATAAGTATT
Found at i:440013 original size:31 final size:30
Alignment explanation
Indices: 439928--440014 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 30
439918 TTCGATAATA
* *
439928 TAATAATTATTTTAT-AGTATTTAGATAAATT
1 TAATAA-TATTTTATAATTTTTTA-ATAAATT
* *
439959 TATTAATAATTTTATAATCTTTTAATAAATT
1 TAATAAT-ATTTTATAATTTTTTAATAAATT
439990 TAATAAGTATTTTATAATTTTTTAA
1 TAATAA-TATTTTATAATTTTTTAA
440015 ACGTTATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
30 1 0.02
31 40 0.85
32 6 0.13
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (30 bp):
TAATAATATTTTATAATTTTTTAATAAATT
Found at i:440772 original size:31 final size:30
Alignment explanation
Indices: 440730--440817 Score: 88
Period size: 32 Copynumber: 2.8 Consensus size: 30
440720 TCAATAAAAT
440730 TTAAAAAATTATAAAATACTTATTAAATTTA
1 TTAAAAAATTATAAAATA-TTATTAAATTTA
* *
440761 TTAAAAGATTATAAAAATTATTAATAAATTTA
1 TTAAAAAATTAT-AAAA-TATTATTAAATTTA
* *
440793 TCT-AAATACTATAAAATAATTATTA
1 T-TAAAAAATTATAAAAT-ATTATTA
440818 TATTATCGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
30 1 0.02
31 21 0.44
32 23 0.48
33 3 0.06
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (30 bp):
TTAAAAAATTATAAAATATTATTAAATTTA
Found at i:440793 original size:12 final size:10
Alignment explanation
Indices: 440733--440790 Score: 50
Period size: 11 Copynumber: 5.7 Consensus size: 10
440723 ATAAAATTTA
440733 AAAAATTA-T
1 AAAAATTATT
440742 AAAATACTTATT
1 AAAA-A-TTATT
*
440754 -AAATTTATT
1 AAAAATTATT
440763 AAAAGATTA-T
1 AAAA-ATTATT
440773 AAAAATTATT
1 AAAAATTATT
440783 AATAAATT
1 AA-AAATT
440791 TATCTAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
9 13 0.32
10 12 0.30
11 14 0.35
12 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (10 bp):
AAAAATTATT
Found at i:448318 original size:31 final size:31
Alignment explanation
Indices: 448283--448356 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
448273 AAAAAATGTA
*
448283 GGCACTTATTTGACACAAAATGTATAGTTTT
1 GGCACTTATTTGACACAAAATGTATAGTTTG
*
448314 GGCACTTATTTGATACAAAATGTATAGTTTG
1 GGCACTTATTTGACACAAAATGTATAGTTTG
448345 GGCACTTATTTG
1 GGCACTTATTTG
448357 GACATTAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (31 bp):
GGCACTTATTTGACACAAAATGTATAGTTTG
Found at i:448858 original size:13 final size:13
Alignment explanation
Indices: 448814--448923 Score: 92
Period size: 13 Copynumber: 8.8 Consensus size: 13
448804 TTGATTTCAA
448814 TTTTAATATTAATT
1 TTTTAATATTAA-T
448828 TTTTAA-A-TAA-
1 TTTTAATATTAAT
* *
448838 ATTAAATATTAAT
1 TTTTAATATTAAT
448851 TTTTAATATT-AT
1 TTTTAATATTAAT
*
448863 ATTATAGATATTAA-
1 -TTTTA-ATATTAAT
448877 TTTTAATATTAAT
1 TTTTAATATTAAT
*
448890 TTTTAA-ATGAA-
1 TTTTAATATTAAT
*
448901 -TTAAATATTAAT
1 TTTTAATATTAAT
448913 TTTTAATATTA
1 TTTTAATATTA
448924 TATTATAGAT
Statistics
Matches: 76, Mismatches: 10, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
10 8 0.11
11 5 0.07
12 19 0.25
13 32 0.42
14 11 0.14
15 1 0.01
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (13 bp):
TTTTAATATTAAT
Found at i:448891 original size:39 final size:36
Alignment explanation
Indices: 448842--448923 Score: 112
Period size: 39 Copynumber: 2.2 Consensus size: 36
448832 AAATAAATTA
*
448842 AATATTAATTTTTAATATTATATTATAGATATTAA-TTTT
1 AATATTAATTTTTAA-ATGA-ATTA-A-ATATTAATTTTT
448881 AATATTAATTTTTAAATGAATTAAATATTAATTTTT
1 AATATTAATTTTTAAATGAATTAAATATTAATTTTT
448917 AATATTA
1 AATATTA
448924 TATTATAGAT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
35 7 0.17
36 12 0.29
37 4 0.10
38 3 0.07
39 15 0.37
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (36 bp):
AATATTAATTTTTAAATGAATTAAATATTAATTTTT
Found at i:448908 original size:62 final size:63
Alignment explanation
Indices: 448787--448944 Score: 247
Period size: 62 Copynumber: 2.6 Consensus size: 63
448777 GGTTTTATAT
448787 TTAA-TTTT-ATATTATATT-T-GAT-TTCAATTTTAATATTAATTTTTTAAATAAATTAAATA
1 TTAATTTTTAATATTATATTATAGATATT-AATTTTAATATTAATTTTTTAAATAAATTAAATA
*
448846 TTAATTTTTAATATTATATTATAGATATTAATTTTAATATTAA-TTTTTAAATGAATTAAATA
1 TTAATTTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATA
448908 TTAATTTTTAATATTATATTATAGATATTTAATTTTA
1 TTAATTTTTAATATTATATTATAGATA-TTAATTTTA
448945 TATCATATAA
Statistics
Matches: 92, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
59 4 0.04
60 4 0.04
61 10 0.11
62 46 0.50
63 26 0.28
64 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (63 bp):
TTAATTTTTAATATTATATTATAGATATTAATTTTAATATTAATTTTTTAAATAAATTAAATA
Found at i:449482 original size:31 final size:31
Alignment explanation
Indices: 449447--449537 Score: 173
Period size: 31 Copynumber: 2.9 Consensus size: 31
449437 TAGTTGTATG
*
449447 AATTATTTAAATTTCAGTATTGCAAAACTAA
1 AATTATTTAAATCTCAGTATTGCAAAACTAA
449478 AATTATTTAAATCTCAGTATTGCAAAACTAA
1 AATTATTTAAATCTCAGTATTGCAAAACTAA
449509 AATTATTTAAATCTCAGTATTGCAAAACT
1 AATTATTTAAATCTCAGTATTGCAAAACT
449538 CTTTTAAGTT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (31 bp):
AATTATTTAAATCTCAGTATTGCAAAACTAA
Found at i:451712 original size:16 final size:18
Alignment explanation
Indices: 451691--451730 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
451681 TAATAGTTCC
451691 ATATATTT-ATA-TGATT
1 ATATATTTGATATTGATT
*
451707 ATATATTTGATATTTATT
1 ATATATTTGATATTGATT
451725 ATATAT
1 ATATAT
451731 ATATTTTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 3 0.14
18 10 0.48
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
ATATATTTGATATTGATT
Found at i:451968 original size:21 final size:20
Alignment explanation
Indices: 451916--451969 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
451906 CTGGTAGAGC
451916 ACTACCTAAAATGTAATTTT
1 ACTACCTAAAATGTAATTTT
**
451936 TTTA-CTAGAAATGTTAATTTT
1 ACTACCTA-AAATG-TAATTTT
451957 ACTACCTAAAATG
1 ACTACCTAAAATG
451970 AATATTTCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 3 0.11
20 7 0.26
21 14 0.52
22 3 0.11
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (20 bp):
ACTACCTAAAATGTAATTTT
Found at i:454156 original size:16 final size:16
Alignment explanation
Indices: 454137--454186 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
454127 GTTTTAAGAT
454137 TTTATAGAATTAATTC
1 TTTATAGAATTAATTC
**
454153 TTTA-A-AAAAAAGTT-
1 TTTATAGAATTAA-TTC
454167 TTTATAGAATTAATTC
1 TTTATAGAATTAATTC
454183 TTTA
1 TTTA
454187 AAAAAAAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
14 8 0.31
15 6 0.23
16 12 0.46
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTATAGAATTAATTC
Found at i:454190 original size:29 final size:30
Alignment explanation
Indices: 454136--454196 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
454126 AGTTTTAAGA
454136 TTTTATAGAATTAATTCTTTAAAAAAAAGT
1 TTTTATAGAATTAATTCTTTAAAAAAAAGT
454166 TTTTATAGAATTAATTCTTTAAAAAAAAGT
1 TTTTATAGAATTAATTCTTTAAAAAAAAGT
454196 T
1 T
454197 GAGTTCGAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (30 bp):
TTTTATAGAATTAATTCTTTAAAAAAAAGT
Found at i:456682 original size:2 final size:2
Alignment explanation
Indices: 456675--456705 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
456665 ATGGGAGAAC
456675 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
456706 GACATATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:459473 original size:16 final size:16
Alignment explanation
Indices: 459452--459496 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
459442 TAAGAAACAT
459452 CAAGATCTACCAAGAG
1 CAAGATCTACCAAGAG
459468 CAAGATCTACCAAGAG
1 CAAGATCTACCAAGAG
459484 CAAGATCTACCAA
1 CAAGATCTACCAA
459497 AAATAGGACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.44, C:0.27, G:0.16, T:0.13
Consensus pattern (16 bp):
CAAGATCTACCAAGAG
Found at i:460065 original size:26 final size:26
Alignment explanation
Indices: 460029--460107 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
460019 TTGTCACATA
* *
460029 ACCCTATCCCCATTAACAGTTTTTGT
1 ACCCTAGCCCCGTTAACAGTTTTTGT
460055 ACCCTAGCCCCGTTAACAGTTTTTGT
1 ACCCTAGCCCCGTTAACAGTTTTTGT
460081 ACCCTAGCCCCGTTAACAGTTTTTGT
1 ACCCTAGCCCCGTTAACAGTTTTTGT
460107 A
1 A
460108 TCCAAATTCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (26 bp):
ACCCTAGCCCCGTTAACAGTTTTTGT
Found at i:461769 original size:45 final size:45
Alignment explanation
Indices: 461709--461805 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 45
461699 GGCTGGAGCC
* * *
461709 ATTTTGTGAGATGGTTCAACAGTGCTATTTGGTCTGACTGGAGTG
1 ATTTTGAGAGATGGTTCAACAGTGCTATTTGGTCCGACTGAAGTG
* * * * *
461754 ATTTTGAGAGCTGGTTCAGCAGTGTTGTTTGGTCCGGCTGAAGTG
1 ATTTTGAGAGATGGTTCAACAGTGCTATTTGGTCCGACTGAAGTG
461799 ATTTTGA
1 ATTTTGA
461806 TGGTTGTTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.19, C:0.11, G:0.32, T:0.38
Consensus pattern (45 bp):
ATTTTGAGAGATGGTTCAACAGTGCTATTTGGTCCGACTGAAGTG
Found at i:463358 original size:15 final size:16
Alignment explanation
Indices: 463335--463384 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
463325 TGAAAATGAC
*
463335 ATATAAACTATGTGAT
1 ATATGAACTATGTGAT
*
463351 AT-TGAACTACGTGATT
1 ATATGAACTATGTGA-T
*
463367 ATATGAA-AATGTGAT
1 ATATGAACTATGTGAT
463382 ATA
1 ATA
463385 AGTTATGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
15 14 0.50
16 10 0.36
17 4 0.14
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.36
Consensus pattern (16 bp):
ATATGAACTATGTGAT
Found at i:463369 original size:45 final size:44
Alignment explanation
Indices: 463319--463412 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 44
463309 GATCTATGTA
*
463319 ATTATATGAAAATGACATATAAACTATGTGATATTGAACTACGTG
1 ATTATATGAAAATGACATATAAACTATGTGACA-TGAACTACGTG
** ** * *
463364 ATTATATGAAAATGTGATATAAGTTATGTGACATGATCTATGTG
1 ATTATATGAAAATGACATATAAACTATGTGACATGAACTACGTG
463408 ATTAT
1 ATTAT
463413 TTGTCTATGT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 14 0.33
45 28 0.67
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.37
Consensus pattern (44 bp):
ATTATATGAAAATGACATATAAACTATGTGACATGAACTACGTG
Found at i:470672 original size:23 final size:23
Alignment explanation
Indices: 470603--470697 Score: 82
Period size: 23 Copynumber: 4.1 Consensus size: 23
470593 AGAGTCGAGG
* * *
470603 TTTCTACGCGGTTCTTTGGGATA
1 TTTCTACGCGGTCCTTCGGGACA
* * *
470626 ATTCTACGTGGTCTTTCGGGACA
1 TTTCTACGCGGTCCTTCGGGACA
*
470649 TTTCTACGCGGTCCTTCGAGACA
1 TTTCTACGCGGTCCTTCGGGACA
* *** *
470672 TATCTATATGGTCATTCGGGACA
1 TTTCTACGCGGTCCTTCGGGACA
470695 TTT
1 TTT
470698 TTACATGGCA
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (23 bp):
TTTCTACGCGGTCCTTCGGGACA
Found at i:470705 original size:23 final size:23
Alignment explanation
Indices: 470627--470713 Score: 77
Period size: 23 Copynumber: 3.8 Consensus size: 23
470617 TTTGGGATAA
* *
470627 TTCTACGTGGTCTTTCGGGACAT
1 TTCTACATGGTCATTCGGGACAT
** * *
470650 TTCTACGCGGTCCTTCGAGACAT
1 TTCTACATGGTCATTCGGGACAT
* *
470673 ATCTATATGGTCATTCGGGACAT
1 TTCTACATGGTCATTCGGGACAT
*
470696 TTTTACATGG-CACTTCGG
1 TTCTACATGGTCA-TTCGG
470714 TGCAATTTAT
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
22 2 0.04
23 49 0.96
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (23 bp):
TTCTACATGGTCATTCGGGACAT
Found at i:473492 original size:21 final size:21
Alignment explanation
Indices: 473424--473499 Score: 73
Period size: 21 Copynumber: 3.6 Consensus size: 21
473414 TTGATGCATG
* * *
473424 GGGTATCGATACCTGTATGAA
1 GGGTATCGATACCTATGTGGA
** *
473445 TAGTATCGATACCATATGGTTGA
1 GGGTATCGATACC-TAT-GTGGA
473468 -GGTATCGATACCTATGTGGA
1 GGGTATCGATACCTATGTGGA
473488 GGGTATCGATAC
1 GGGTATCGATAC
473500 ACGGGGAACT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
20 4 0.09
21 25 0.57
22 13 0.30
23 2 0.05
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (21 bp):
GGGTATCGATACCTATGTGGA
Found at i:481348 original size:56 final size:56
Alignment explanation
Indices: 481231--481475 Score: 203
Period size: 56 Copynumber: 4.4 Consensus size: 56
481221 CCAGACTTTA
* * * * ** *
481231 GATTGAAACACAGAGGTGCTAAATCATTAC-AAC-GCACAGAGGTGCCA-TATTCTA
1 GATTGAAGCACAAAGGTGCTCAATCATTTCTAACTGCACAGAGGTATCAGT-TTCTC
* * * * *
481285 GACTGAAGAACAAAGATGCTCAGTCATTTCTAACTGCACAGAGGTATCAGTTTTTC
1 GATTGAAGCACAAAGGTGCTCAATCATTTCTAACTGCACAGAGGTATCAGTTTCTC
* * * * * *
481341 GATTGAAGCACAAAGGTGCTCAATCATTACCAA--GCATAGAGGTACCAGATTCTA
1 GATTGAAGCACAAAGGTGCTCAATCATTTCTAACTGCACAGAGGTATCAGTTTCTC
* * * * * * *
481395 GACTGAAGCACAAAGGTACTTAATCATTTTTAACTGCACAAAGGTGTCAGTTTGTC
1 GATTGAAGCACAAAGGTGCTCAATCATTTCTAACTGCACAGAGGTATCAGTTTCTC
* *
481451 GATTAAAGCACAGAGGTGCTCAATC
1 GATTGAAGCACAAAGGTGCTCAATC
481476 GTTAATTCAA
Statistics
Matches: 145, Mismatches: 41, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
54 65 0.45
55 3 0.02
56 76 0.52
57 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (56 bp):
GATTGAAGCACAAAGGTGCTCAATCATTTCTAACTGCACAGAGGTATCAGTTTCTC
Found at i:481366 original size:110 final size:110
Alignment explanation
Indices: 481153--481475 Score: 332
Period size: 110 Copynumber: 2.9 Consensus size: 110
481143 TTGGTTGTCA
* * * * * * *
481153 AAGCACAGAGGTTCCAGACTCTATATTGATGCACAAA-AGTACTCAATCAATTT-TAA-AG-AGC
1 AAGCACAGAGGTACCAGATTCTAGACTGAAGAACAAAGA-TACTCAATC-ATTTCTAACTGCA-C
* ** * * *
481214 AGAGGTACCAGACTTTAGATTGAAACACAGAGGTGCTAAATCATTA-C
63 AGAGGTATCAGTTTTTCGATTGAAGCACAGAGGTGCTCAATCATTACC
* * * *
481261 AACGCACAGAGGTGCCATATTCTAGACTGAAGAACAAAGATGCTCAGTCATTTCTAACTGCACAG
1 AA-GCACAGAGGTACCAGATTCTAGACTGAAGAACAAAGATACTCAATCATTTCTAACTGCACAG
*
481326 AGGTATCAGTTTTTCGATTGAAGCACAAAGGTGCTCAATCATTACC
65 AGGTATCAGTTTTTCGATTGAAGCACAGAGGTGCTCAATCATTACC
* * * * * *
481372 AAGCATAGAGGTACCAGATTCTAGACTGAAGCACAAAGGTACTTAATCATTTTTAACTGCACAAA
1 AAGCACAGAGGTACCAGATTCTAGACTGAAGAACAAAGATACTCAATCATTTCTAACTGCACAGA
* * *
481437 GGTGTCAGTTTGTCGATTAAAGCACAGAGGTGCTCAATC
66 GGTATCAGTTTTTCGATTGAAGCACAGAGGTGCTCAATC
481476 GTTAATTCAA
Statistics
Matches: 178, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
108 6 0.03
109 38 0.21
110 130 0.73
111 4 0.02
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (110 bp):
AAGCACAGAGGTACCAGATTCTAGACTGAAGAACAAAGATACTCAATCATTTCTAACTGCACAGA
GGTATCAGTTTTTCGATTGAAGCACAGAGGTGCTCAATCATTACC
Found at i:481406 original size:54 final size:55
Alignment explanation
Indices: 481213--481422 Score: 210
Period size: 54 Copynumber: 3.8 Consensus size: 55
481203 TTTTAAAGAG
* * * *
481213 CAGAGGTACCAGACTT-TAGATTGAAACACAGAGGTGCTAAATCATTA-CAACGCA
1 CAGAGGTACCAGA-TTCTAGACTGAAGCACAAAGGTGCTCAATCATTACCAACGCA
* * * * * * *
481267 CAGAGGTGCCATATTCTAGACTGAAGAACAAAGATGCTCAGTCATTTCTAACTGCA
1 CAGAGGTACCAGATTCTAGACTGAAGCACAAAGGTGCTCAATCATTACCAAC-GCA
* * * * *
481323 CAGAGGTATCAGTTTTTCGATTGAAGCACAAAGGTGCTCAATCATTACCAA-GCA
1 CAGAGGTACCAGATTCTAGACTGAAGCACAAAGGTGCTCAATCATTACCAACGCA
* * *
481377 TAGAGGTACCAGATTCTAGACTGAAGCACAAAGGTACTTAATCATT
1 CAGAGGTACCAGATTCTAGACTGAAGCACAAAGGTGCTCAATCATT
481423 TTTAACTGCA
Statistics
Matches: 122, Mismatches: 31, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
53 2 0.02
54 75 0.61
55 3 0.02
56 42 0.34
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (55 bp):
CAGAGGTACCAGATTCTAGACTGAAGCACAAAGGTGCTCAATCATTACCAACGCA
Found at i:490544 original size:19 final size:19
Alignment explanation
Indices: 490522--490601 Score: 52
Period size: 19 Copynumber: 3.9 Consensus size: 19
490512 TAATATATAT
490522 ATATATATATAAATAATAA
1 ATATATATATAAATAATAA
* *
490541 ATATAGTATTAAAAAATAACCAA
1 ATATA-TA-T-ATAAATAA-TAA
* *
490564 ATGAATATAAATAAATAAAAA
1 AT--ATATATATAAATAATAA
* *
490585 ATATATGTATATATAAT
1 ATATATATATAAATAAT
490602 CATAATATAG
Statistics
Matches: 46, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
19 16 0.35
20 2 0.04
21 5 0.11
22 14 0.30
23 4 0.09
24 2 0.04
25 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (19 bp):
ATATATATATAAATAATAA
Found at i:490727 original size:21 final size:21
Alignment explanation
Indices: 490688--490728 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
490678 ATGTAAATAA
*
490688 ATAATAAATAAATATATATAT
1 ATAATAAATAAATAGATATAT
490709 ATAATAAATAAA-AGGATATA
1 ATAATAAATAAATA-GATATA
490729 AAGAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
ATAATAAATAAATAGATATAT
Found at i:491119 original size:37 final size:37
Alignment explanation
Indices: 491078--491179 Score: 143
Period size: 36 Copynumber: 2.8 Consensus size: 37
491068 GTGCTTGTGG
* * * *
491078 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAACTCT
* *
491115 ATCCTATTTTTA-GAGTTTGAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAACTCT
491151 ATCCTATTTTTAGGAGTTTGAATCCTAGT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGT
491180 CGGACGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
36 31 0.54
37 26 0.46
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAACTCT
Found at i:492325 original size:106 final size:106
Alignment explanation
Indices: 491852--492511 Score: 883
Period size: 106 Copynumber: 6.3 Consensus size: 106
491842 GCATTGTTCT
* ** * *
491852 GAGTCCAATATCC-TC-CATCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGAC
1 GAGTCCAATATCCTTCGC-T-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGAC
* ** *
491915 AACCAGTC-GTCCCTTCGTTGTGAAGTTGAACTTATGTTGTCTC
64 AACCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
491958 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T--GAA-AT-TTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * * * * * *
492017 TCAGCCGCCCCTTCGTCATGAAGTTGAGCTTGTGTTGCCTTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * * *
492059 G-GTTCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTAACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
492123 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT-TG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
492163 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGGTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
492228 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
492269 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTTTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * *
492334 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
492375 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
492440 CCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
**
492481 GAGTCCAATATCCTTCATTGTGAAGTTGAAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAA
492512 GAAGTTGTTT
Statistics
Matches: 490, Mismatches: 52, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
99 1 0.00
100 74 0.15
101 5 0.01
102 4 0.01
104 6 0.01
105 95 0.19
106 301 0.61
107 3 0.01
108 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:492510 original size:43 final size:43
Alignment explanation
Indices: 492449--492600 Score: 128
Period size: 43 Copynumber: 3.4 Consensus size: 43
492439 ACCAACGGTC
* *
492449 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
1 CCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAAT
* * * * ** ***
492492 CCTTCATTGTGAAGTTGAA--AGAAGTTGTTTGTTGACAACCAGCGGT
1 CCTTCGTTGTGAAGTTGAACTTG-CGTTGTCTG--GA-GTCCA-AAAT
*
492538 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAAT
1 -CCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAAT
492582 CCTTCGTTGTGAAGTTGAA
1 CCTTCGTTGTGAAGTTGAA
492601 ATTGGCTCTG
Statistics
Matches: 80, Mismatches: 21, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
41 1 0.01
42 7 0.09
43 35 0.44
44 3 0.04
45 6 0.08
46 3 0.04
47 17 0.21
48 7 0.09
49 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.34
Consensus pattern (43 bp):
CCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAAT
Found at i:492569 original size:302 final size:302
Alignment explanation
Indices: 492209--492813 Score: 1066
Period size: 302 Copynumber: 2.0 Consensus size: 302
492199 TCTAAAATTG
492209 AGAAGGTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
1 AGAAGGTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* * *
492274 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTTTGAAATTGGGAAGTTGTTTATTGACAACCAGC
66 CAAAATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGC
*
492339 AGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGA
131 AGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGA
*
492404 AATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAAC
196 AATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAAC
* *
492469 TTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAA
261 TTGCGTTGTCTGGAGTCCAATATCATTCACTGTGAAGTTGAA
*
492511 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
1 AGAAGGTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* *
492576 CAAAATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGC
66 CAAAATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGC
* * *
492641 GGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGA
131 AGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGA
* *
492706 AATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
196 AATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAAC
*
492771 TTGCGTTGTCTGGAGTCCAATATCATTCGCTGTGAAGTTGAA
261 TTGCGTTGTCTGGAGTCCAATATCATTCACTGTGAAGTTGAA
492813 A
1 A
492814 TTGGCTCCGA
Statistics
Matches: 287, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
302 287 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (302 bp):
AGAAGGTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
CAAAATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGC
AGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGA
AATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAAC
TTGCGTTGTCTGGAGTCCAATATCATTCACTGTGAAGTTGAA
Found at i:492584 original size:90 final size:90
Alignment explanation
Indices: 492426--492601 Score: 325
Period size: 90 Copynumber: 2.0 Consensus size: 90
492416 AATTGGGAAA
*
492426 TTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
1 TTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAA
492491 TCCTTCATTGTGAAGTTGAAAGAAG
66 TCCTTCATTGTGAAGTTGAAAGAAG
*
492516 TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAA
1 TTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAA
*
492581 TCCTTCGTTGTGAAGTTGAAA
66 TCCTTCATTGTGAAGTTGAAA
492602 TTGGCTCTGA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (90 bp):
TTGTTTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAAA
TCCTTCATTGTGAAGTTGAAAGAAG
Found at i:492650 original size:196 final size:204
Alignment explanation
Indices: 491898--492878 Score: 1215
Period size: 212 Copynumber: 4.8 Consensus size: 204
491888 TCTGGAACCG
* * * ** *
491898 GGAAATTGTTTGTTGACAACCAGTC-GTCCCTTCGTTGTGAAGTTGAACTTATGTTGTCTCGAGT
1 GGAAGTTGTTTATTGACAACCAG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGT
* * *
491962 CCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T-GAAA-T-TTTATTGACAATCAGC
65 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAATTGTTTGTTGACAACCAGC
* * ** * * * * * * *
492022 CGCCCCTTCGTCATGAAGTTGAGCTTGTGTTGCCTTGG-GTTCAAGATCCTTCGCTGAGAAGTTG
130 GGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTC-TGGAGTCCAATATCCTTCGAT--GTAGTTG
492086 AAATTGGCTCTGAAA
192 AAA-T-GCTCTGAAA
*
492101 TTGGGAAGTTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT-TGGA
1 ---GGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
* * **
492165 GTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGGTGTTTGTTGACAACC
63 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAATTGTTTGTTGACAACC
* *
492230 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
127 AGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGT--AGT
*
492295 TGAAATTGGCTTTGAAA
190 TGAAA-T-GCTCTGAAA
* * *
492312 TTGGGAAGTTGTTTATTGACAACCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTTGA
1 ---GGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
492377 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACC
63 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAATTGTTTGTTGACAACC
* *
492442 AACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTC-AT-T-G-TG
127 AGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGTAGTTG
492503 -AA-G-T-TGAAA
192 AAATGCTCTGAAA
*
492512 -GAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
1 GGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* * *
492576 CAAAATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGC
66 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG-GAAATTGTTTGTTGACAACCAGC
*
492641 GGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGA
130 GGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGT--AGTTGA
492706 AATTGGCTCTGAAA
193 AA-T-GCTCTGAAA
492720 TTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
1 ---GGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGA
* * *
492785 GTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTG-TTGTTGACAACT
63 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGG-AAATTGTTTGTTGACAACC
*
492849 AGCCGTCCCTTCGTTGTGAAGTTGAACTTG
127 AGCGGTCCCTTCGTTGTGAAGTTGAACTTG
492879 TGTTATCTTG
Statistics
Matches: 694, Mismatches: 51, Indels: 55
0.87 0.06 0.07
Matches are distributed among these distances:
195 1 0.00
196 170 0.24
197 1 0.00
198 1 0.00
200 5 0.01
201 2 0.00
202 3 0.00
203 2 0.00
205 41 0.06
206 54 0.08
207 3 0.00
208 5 0.01
209 4 0.01
210 5 0.01
211 175 0.25
212 221 0.32
213 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (204 bp):
GGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAATTGTTTGTTGACAACCAGCG
GTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGTAGTTGAAAT
GCTCTGAAA
Found at i:492680 original size:408 final size:406
Alignment explanation
Indices: 492105--492878 Score: 1377
Period size: 408 Copynumber: 1.9 Consensus size: 406
492095 CTGAAATTGG
492105 GAAGTTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTTGGAGTCCA
1 GAAGTTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTTGGAGTCCA
*
492170 ATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGGTGTTTGTTGACAACCAGCGG
66 AAATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGGTGTTTGTTGACAACCAGCGG
492235 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAA
131 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAA
*
492300 TTGGCTTTGAAATTGGGAAGTTGTTTATTGACAACCAGCAGTCCCTTCGTCGTGAAGTTGAACTT
196 TTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCAGTCCCTTCGTCGTGAAGTTGAACTT
* * * *
492365 GCATTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGT
261 GCATTGTCTGGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTG-
*
492430 TTGTTGACAACCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCT
325 TTGTTGACAACCAACCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCT
492495 TCATTGTGAAGTTGAAA
390 TCATTGTGAAGTTGAAA
* *
492512 GAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCC
1 GAAGTTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT-TGGAGTCC
* *
492577 AAAATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCG
65 AAAATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGGTGTTTGTTGACAACCAGCG
*
492642 GTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAA
130 GTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAA
*
492707 ATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
195 ATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCAGTCCCTTCGTCGTGAAGTTGAACT
*
492772 TGCGTTGTCTGGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTG
260 TGCATTGTCTGGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTG
* * *
492837 TTGTTGACAACTAGCCGTCCCTTCGTTGTGAAGTTGAACTTG
325 TTGTTGACAACCAACCGTCCCTTCGTCGTGAAGTTGAACTTG
492879 TGTTATCTTG
Statistics
Matches: 349, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
407 92 0.26
408 257 0.74
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (406 bp):
GAAGTTGTTTATTAACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTTGGAGTCCA
AAATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGGTGTTTGTTGACAACCAGCGG
TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAA
TTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCAGTCCCTTCGTCGTGAAGTTGAACTT
GCATTGTCTGGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTGT
TGTTGACAACCAACCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTT
CATTGTGAAGTTGAAA
Found at i:492699 original size:106 final size:106
Alignment explanation
Indices: 492511--492878 Score: 614
Period size: 106 Copynumber: 3.5 Consensus size: 106
492501 TGAAGTTGAA
492511 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
1 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* *
492576 CAAAATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
66 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
*
492617 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTC
1 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
492682 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
66 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
* *
492723 GGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
1 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
* *
492788 CAATATCATTCGCTGTGAAGTTGAAATTGGCTCCGAAATTG
66 CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
* * * *
492829 -GAAAATTG-TTGTTGACAACTAGCCGTCCCTTCGTTGTGAAGTTGAACTTG
1 AG-AAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
492879 TGTTATCTTG
Statistics
Matches: 248, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
105 39 0.16
106 209 0.84
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (106 bp):
AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTC
CAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
Found at i:493739 original size:22 final size:22
Alignment explanation
Indices: 493713--493770 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
493703 TTATTATGTT
493713 TGGTCAAAGGTTTGGCATTTGA
1 TGGTCAAAGGTTTGGCATTTGA
*
493735 TGGTCATAGGTTTGGCATTTGA
1 TGGTCAAAGGTTTGGCATTTGA
* *
493757 TGTTCAACGGTTTG
1 TGGTCAAAGGTTTG
493771 ATGGGGTAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.19, C:0.10, G:0.31, T:0.40
Consensus pattern (22 bp):
TGGTCAAAGGTTTGGCATTTGA
Found at i:494411 original size:19 final size:19
Alignment explanation
Indices: 494389--494466 Score: 56
Period size: 19 Copynumber: 4.1 Consensus size: 19
494379 TCTTTTTAAT
494389 TTTTGTTCTTTCTT-TTTTC
1 TTTT-TTCTTTCTTATTTTC
* *
494408 TTTTGTT-TCTCTTAATTTC
1 TTTT-TTCTTTCTTATTTTC
* *
494427 TTTTTTGTTTCTTCTTTTGC
1 TTTTTTCTTTCTTATTTT-C
494447 TTCTTTTCTTT-TT-TTTTC
1 TT-TTTTCTTTCTTATTTTC
494465 TT
1 TT
494467 GATTGGATCT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
18 10 0.20
19 27 0.55
20 5 0.10
21 7 0.14
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.77
Consensus pattern (19 bp):
TTTTTTCTTTCTTATTTTC
Found at i:494411 original size:20 final size:19
Alignment explanation
Indices: 494375--494444 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
494365 TTTTTGTCCC
**
494375 TTTTTCTTTTTAATTTTTG
1 TTTTTCTTTTTTCTTTTTG
494394 TTCTTTCTTTTTTC-TTTTG
1 TT-TTTCTTTTTTCTTTTTG
* *
494413 TTTCTCTTAATTTCTTTTTTG
1 TTTTTCTT-TTTTC-TTTTTG
494434 TTTCTTCTTTT
1 TTT-TTCTTTT
494445 GCTTCTTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
18 5 0.12
19 13 0.32
20 9 0.22
21 9 0.22
22 4 0.10
ACGTcount: A:0.06, C:0.13, G:0.04, T:0.77
Consensus pattern (19 bp):
TTTTTCTTTTTTCTTTTTG
Found at i:495609 original size:8 final size:8
Alignment explanation
Indices: 495596--495631 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
495586 GTAGATGAAG
495596 ATGCAAAA
1 ATGCAAAA
495604 ATGCAAAA
1 ATGCAAAA
495612 ATGC-AAA
1 ATGCAAAA
*
495619 ATGCAAGA
1 ATGCAAAA
495627 ATGCA
1 ATGCA
495632 TGAAATGTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.14
Consensus pattern (8 bp):
ATGCAAAA
Found at i:495621 original size:15 final size:15
Alignment explanation
Indices: 495596--495631 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
495586 GTAGATGAAG
495596 ATGCAAAAATGCAAAA
1 ATGC-AAAATGCAAAA
*
495612 ATGCAAAATGCAAGA
1 ATGCAAAATGCAAAA
495627 ATGCA
1 ATGCA
495632 TGAAATGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATGCAAAATGCAAAA
Found at i:496159 original size:14 final size:14
Alignment explanation
Indices: 496140--496167 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
496130 TTGGGCAGTC
496140 TTCATCTGTTCCTT
1 TTCATCTGTTCCTT
496154 TTCATCTGTTCCTT
1 TTCATCTGTTCCTT
496168 CCAAGCTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCATCTGTTCCTT
Found at i:498932 original size:12 final size:12
Alignment explanation
Indices: 498895--498974 Score: 72
Period size: 12 Copynumber: 6.6 Consensus size: 12
498885 GGAAAAAATG
*
498895 AATAAATGAAAA
1 AATAAATAAAAA
* *
498907 AATGAAGAATAAA
1 AATAAATAA-AAA
*
498920 AATAAGTAAAAA
1 AATAAATAAAAA
*
498932 AATTAAA-GAAAA
1 AA-TAAATAAAAA
*
498944 AATAAATAAATA
1 AATAAATAAAAA
*
498956 AATAAATAAATA
1 AATAAATAAAAA
498968 AATAAAT
1 AATAAAT
498975 GAAATATTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
11 4 0.07
12 39 0.71
13 12 0.22
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (12 bp):
AATAAATAAAAA
Found at i:498952 original size:4 final size:4
Alignment explanation
Indices: 498919--498980 Score: 72
Period size: 4 Copynumber: 15.2 Consensus size: 4
498909 TGAAGAATAA
* * *
498919 AAAT AAGT AAAA AAATT AAAG AAA- AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
498967 AAAT AAAT GAAAT A
1 AAAT AAAT -AAAT A
498981 TTAAAATATA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
3 3 0.06
4 40 0.80
5 7 0.14
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:499069 original size:18 final size:18
Alignment explanation
Indices: 499020--499073 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 18
499010 AAAATAGAAA
*
499020 AATAATAATCATAACAATAAT
1 AATAGTAAT-ATAA-AAT-AT
499041 AATAGTAATATGAAAATAT
1 AATAGTAATAT-AAAATAT
499060 AATA-TAATATAAAA
1 AATAGTAATATAAAA
499074 AAACAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 4 0.13
18 6 0.19
19 6 0.19
20 5 0.16
21 10 0.32
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.30
Consensus pattern (18 bp):
AATAGTAATATAAAATAT
Found at i:499074 original size:18 final size:19
Alignment explanation
Indices: 499024--499074 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
499014 TAGAAAAATA
*
499024 ATAATCATAACAATAATAAT
1 ATAAT-ATAAAAATAATAAT
*
499044 AGTAATATGAAAAT-ATAAT
1 A-TAATATAAAAATAATAAT
499063 ATAATATAAAAA
1 ATAATATAAAAA
499075 AACAAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 10 0.37
19 6 0.22
20 7 0.26
21 4 0.15
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (19 bp):
ATAATATAAAAATAATAAT
Found at i:499280 original size:19 final size:19
Alignment explanation
Indices: 499258--499318 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 19
499248 TAAAATATAT
499258 ATATGTATATAAATAATAA
1 ATATGTATATAAATAATAA
*
499277 ATATAGTAT-TAAAAAATAA
1 ATAT-GTATATAAATAATAA
* *
499296 CCAAATGAATATAAATAAATAA
1 --ATATGTATATAAAT-AATAA
499318 A
1 A
499319 AAATATATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
19 13 0.39
20 8 0.24
21 7 0.21
22 5 0.15
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (19 bp):
ATATGTATATAAATAATAA
Found at i:499469 original size:21 final size:22
Alignment explanation
Indices: 499423--499471 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
499413 ATAATGTAAA
*
499423 TAATA-AATAAATAAAAATATC
1 TAATATAATAAATAAAAAGATC
*
499444 T-ATATAATAAATAAAAGGAT-
1 TAATATAATAAATAAAAAGATC
499464 TAATATAA
1 TAATATAA
499472 AGAAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (22 bp):
TAATATAATAAATAAAAAGATC
Found at i:500301 original size:37 final size:37
Alignment explanation
Indices: 500248--500352 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
500238 CCTTTTCGTC
500248 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
500285 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
500322 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
500353 CCACAAGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:502687 original size:51 final size:51
Alignment explanation
Indices: 502598--502717 Score: 150
Period size: 51 Copynumber: 2.4 Consensus size: 51
502588 ATAAATAAAT
* * * *
502598 TTAACACATGCTTACACCGATATAAATGAATAATATAAAAAAGTGTAGCAC
1 TTAACACATACTTACACCGATATAAATGAATAAAATAAAAAAATGTAACAC
* * * * *
502649 TTAAAACATACTTACACCGGTGTAAGTGAATAAAATAAAAAAATGTAATAC
1 TTAACACATACTTACACCGATATAAATGAATAAAATAAAAAAATGTAACAC
*
502700 TTAGCACATACTTACACC
1 TTAACACATACTTACACC
502718 AATGCAAGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.26
Consensus pattern (51 bp):
TTAACACATACTTACACCGATATAAATGAATAAAATAAAAAAATGTAACAC
Found at i:506492 original size:16 final size:15
Alignment explanation
Indices: 506453--506492 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
506443 AGAGACTAAT
506453 TTATTTTTTTATAAA
1 TTATTTTTTTATAAA
*
506468 TTAATTTTTTTATGAA
1 TT-ATTTTTTTATAAA
*
506484 TTATCTTTT
1 TTATTTTTT
506493 AAAATGTGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (15 bp):
TTATTTTTTTATAAA
Found at i:506492 original size:17 final size:16
Alignment explanation
Indices: 506450--506486 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
506440 AAGAGAGACT
*
506450 AATTTATTTTTTTATA
1 AATTAATTTTTTTATA
*
506466 AATTAATTTTTTTATG
1 AATTAATTTTTTTATA
506482 AATTA
1 AATTA
506487 TCTTTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
AATTAATTTTTTTATA
Found at i:514890 original size:6 final size:6
Alignment explanation
Indices: 514880--514924 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
514870 TCTCGTCTCG
* *
514880 GGTCGG GGTCGG GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
514925 AATACGTGTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.00, C:0.16, G:0.56, T:0.29
Consensus pattern (6 bp):
GGTCGT
Found at i:515047 original size:21 final size:20
Alignment explanation
Indices: 515014--515226 Score: 175
Period size: 21 Copynumber: 10.2 Consensus size: 20
515004 CTTTGCGATT
*
515014 TTGGACTATCGCAA-CGAAT
1 TTGGACTATCGCAACCGAAC
*
515033 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAAC-CGAAC
515056 TTGGACTATCGCAACGCGAAC
1 TTGGACTATCGCAAC-CGAAC
* *
515077 TTGGACTATCACAA-CGAAT
1 TTGGACTATCGCAACCGAAC
*
515096 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAAC-CGAAC
*
515119 TTCGACTATCGCAA-CGAAC
1 TTGGACTATCGCAACCGAAC
*
515138 TTGGACTATTTTGCAACGCGAAC
1 TTGGACTA--TCGCAAC-CGAAC
*
515161 TTGGACTATCGCAA-CGAAT
1 TTGGACTATCGCAACCGAAC
*
515180 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAAC-CGAAC
* *
515203 TTCGACTATCGCAA-CGAAT
1 TTGGACTATCGCAACCGAAC
515222 TTGGA
1 TTGGA
515227 AAATCGCATT
Statistics
Matches: 158, Mismatches: 20, Indels: 32
0.75 0.10 0.15
Matches are distributed among these distances:
19 46 0.29
21 71 0.45
23 41 0.26
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (20 bp):
TTGGACTATCGCAACCGAAC
Found at i:515092 original size:42 final size:40
Alignment explanation
Indices: 515014--515226 Score: 223
Period size: 42 Copynumber: 5.1 Consensus size: 40
515004 CTTTGCGATT
* *
515014 TTGGACTATCGCAA--CGAATTTGGAATAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGCGAACTTGGACT--ATCGCAA--CGAAC
* *
515056 TTGGACTATCGCAACGCGAACTTGGACTATCACAACGAAT
1 TTGGACTATCGCAACGCGAACTTGGACTATCGCAACGAAC
* *
515096 TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAAC
1 TTGGACT--ATCGCAACGCGAACTTGGACTATCGCAACGAAC
* *
515138 TTGGACTATTTTGCAACGCGAACTTGGACTATCGCAACGAAT
1 TTGGACTA--TCGCAACGCGAACTTGGACTATCGCAACGAAC
* * *
515180 TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAAT
1 TTGGACT--ATCGCAACGCGAACTTGGACTATCGCAACGAAC
515222 TTGGA
1 TTGGA
515227 AAATCGCATT
Statistics
Matches: 148, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
40 11 0.07
42 126 0.85
44 11 0.07
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (40 bp):
TTGGACTATCGCAACGCGAACTTGGACTATCGCAACGAAC
Found at i:515113 original size:63 final size:63
Alignment explanation
Indices: 515014--515234 Score: 260
Period size: 63 Copynumber: 3.5 Consensus size: 63
515004 CTTTGCGATT
515014 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGCGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGCGAAC
* *
515077 TTGGACTATCACAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA--CGAAC
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGCGAAC
* * * * *
515138 TTGGACTATTTTGCAACGCGAACTTGGACT--ATCGCAA--CGAATTTGGAATAAATCGCAACGC
1 TTGGACTA--TCGCAA--CGAATTTGGAATAAATCGCAACGCGAACTTGGACT--ATCGCAACGC
515199 GAAC
60 GAAC
*
515203 TTCGACTATCGCAACGAATTTGG-A-AAATCGCA
1 TTGGACTATCGCAACGAATTTGGAATAAATCGCA
515235 TTGCGGTAGT
Statistics
Matches: 135, Mismatches: 13, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
61 36 0.27
63 77 0.57
65 22 0.16
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (63 bp):
TTGGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTGGACTATCGCAACGCGAAC
Found at i:515154 original size:84 final size:82
Alignment explanation
Indices: 515042--515226 Score: 307
Period size: 84 Copynumber: 2.2 Consensus size: 82
515032 TTTGGAATAA
515042 ATCGCAACGCGAACTTGGACTATCGCAACGCGAACTTGGACTATCACAACGAATTTGGAATAAAT
1 ATCGCAA--CGAACTTGGACTATCGCAACGCGAACTTGGACTATCACAACGAATTTGGAATAAAT
515107 CGCAACGCGAACTTCGACT
64 CGCAACGCGAACTTCGACT
* *
515126 ATCGCAACGAACTTGGACTATTTTGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAAT
1 ATCGCAACGAACTTGGACTA--TCGCAACGCGAACTTGGACTATCACAACGAATTTGGAATAAAT
515191 CGCAACGCGAACTTCGACT
64 CGCAACGCGAACTTCGACT
*
515210 ATCGCAACGAATTTGGA
1 ATCGCAACGAACTTGGA
515227 AAATCGCATT
Statistics
Matches: 96, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
82 13 0.14
84 83 0.86
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (82 bp):
ATCGCAACGAACTTGGACTATCGCAACGCGAACTTGGACTATCACAACGAATTTGGAATAAATCG
CAACGCGAACTTCGACT
Found at i:515227 original size:42 final size:42
Alignment explanation
Indices: 515063--515234 Score: 258
Period size: 42 Copynumber: 4.1 Consensus size: 42
515053 AACTTGGACT
* *
515063 ATCGCAACGCGAACTTGGACTATCACAACGAATTTGGAATAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAA
* * *
515105 ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGACTAT
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAA
* * *
515147 TTTGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAA
515189 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGG-A-AA
1 ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAA
515229 ATCGCA
1 ATCGCA
515235 TTGCGGTAGT
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
40 8 0.07
41 1 0.01
42 107 0.92
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (42 bp):
ATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAA
Found at i:518479 original size:24 final size:23
Alignment explanation
Indices: 518406--518481 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
518396 GAGTCGATGG
*
518406 TTCTACGCGGTCCTTGGGGACAAA
1 TTCTACGTGGTCCTT-GGGACAAA
*
518430 -TCTATGTGGTCCTTTGGGA-AAA
1 TTCTACGTGGTCC-TTGGGACAAA
*
518452 TTCTACGTGGTTCTTGGAGACAAA
1 TTCTACGTGGTCCTTGG-GACAAA
518476 TTCTAC
1 TTCTAC
518482 ATGGCACTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
22 7 0.16
23 26 0.59
24 11 0.25
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (23 bp):
TTCTACGTGGTCCTTGGGACAAA
Found at i:524741 original size:18 final size:18
Alignment explanation
Indices: 524698--524744 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
524688 ATGCCAAAAT
*
524698 GGTATCGATACTGATGTG
1 GGTATCGGTACTGATGTG
524716 GGTATCGGTACTGATGTG
1 GGTATCGGTACTGATGTG
524734 GGTATCGGTAC
1 GGTATCGGTAC
524745 CATAGAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.19, C:0.13, G:0.36, T:0.32
Consensus pattern (18 bp):
GGTATCGGTACTGATGTG
Found at i:525434 original size:24 final size:24
Alignment explanation
Indices: 525338--525438 Score: 116
Period size: 23 Copynumber: 4.3 Consensus size: 24
525328 GAGTCGAGGG
525338 TTCTACGCGGTCCTTCGGGACAAA
1 TTCTACGCGGTCCTTCGGGACAAA
* *
525362 -TCTATGTGGTCCTTCGGGAC-AA
1 TTCTACGCGGTCCTTCGGGACAAA
* * * *
525384 TTCTATGTGGTCCTTCGGGATAGA
1 TTCTACGCGGTCCTTCGGGACAAA
**
525408 TTCTACGCGGTCCTTTTGGACAAA
1 TTCTACGCGGTCCTTCGGGACAAA
525432 TTCTACG
1 TTCTACG
525439 TGGCACTTCG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
22 2 0.03
23 37 0.57
24 26 0.40
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.33
Consensus pattern (24 bp):
TTCTACGCGGTCCTTCGGGACAAA
Found at i:532517 original size:21 final size:19
Alignment explanation
Indices: 532465--532518 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
532455 TTTAGCGATC
*
532465 CCTTCACAAAAGGATCAAT
1 CCTTCACAAAAAGATCAAT
*
532484 CCTTCGAGAAAAAAGATCAAT
1 CCTTC-A-CAAAAAGATCAAT
*
532505 CTCTTCACTAAAAG
1 C-CTTCACAAAAAG
532519 GAACGATGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
19 5 0.18
20 6 0.21
21 13 0.46
22 4 0.14
ACGTcount: A:0.43, C:0.24, G:0.11, T:0.22
Consensus pattern (19 bp):
CCTTCACAAAAAGATCAAT
Found at i:536693 original size:20 final size:20
Alignment explanation
Indices: 536641--536719 Score: 72
Period size: 20 Copynumber: 4.0 Consensus size: 20
536631 ACAGATGTTG
*
536641 TTCTTACAGTATCGATACCA
1 TTCTTACAGTATCGATACTA
*
536661 --CTTGAACAATATCGATACTA
1 TTCTT--ACAGTATCGATACTA
* *
536681 TTCTTACAGTATCGATATTG
1 TTCTTACAGTATCGATACTA
**
536701 TTCTTTTAGTATCGATACT
1 TTCTTACAGTATCGATACT
536720 CTTATGGTAG
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
18 3 0.06
20 41 0.87
22 3 0.06
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (20 bp):
TTCTTACAGTATCGATACTA
Found at i:537897 original size:2 final size:2
Alignment explanation
Indices: 537890--537918 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
537880 TGTTAAAAGA
537890 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
537919 GGTTAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:558376 original size:18 final size:19
Alignment explanation
Indices: 558341--558377 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
558331 CACAGAATGC
558341 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
558361 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
558378 GGATTACTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:561957 original size:13 final size:13
Alignment explanation
Indices: 561939--561963 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
561929 TATCACCACC
561939 CTTGTGTAAAATA
1 CTTGTGTAAAATA
561952 CTTGTGTAAAAT
1 CTTGTGTAAAAT
561964 CATTTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (13 bp):
CTTGTGTAAAATA
Found at i:563372 original size:34 final size:32
Alignment explanation
Indices: 563319--563389 Score: 97
Period size: 34 Copynumber: 2.2 Consensus size: 32
563309 CCTTACAAAC
*
563319 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
*
563351 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGCTAAACTAGAACCTT
*
563385 CCCCT
1 TCCCT
563390 TTACAAAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 22 0.65
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGCTAAACTAGAACCTT
Found at i:563905 original size:29 final size:31
Alignment explanation
Indices: 563873--563932 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 31
563863 AAATTTTGAA
*
563873 TAAATTCAATT-AAGTCCAAATA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
*
563902 TAAATTCAATTCAAGTCTAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
563933 CCTTAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 11 0.41
30 9 0.33
31 7 0.26
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.37
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:565278 original size:62 final size:59
Alignment explanation
Indices: 565233--565365 Score: 173
Period size: 59 Copynumber: 2.3 Consensus size: 59
565223 ACTCTTTTAA
* *
565233 AATAAATACATCGAATGCAATTCGTGCATCGATGCATAAGTTGCATCGATGCATCCTATT
1 AATAAA-ACATCGAATGCAATTCGTACATCAATGCATAAGTTGCATCGATGCATCCTATT
* * *
565293 AATGAAACATCGAATGCAATTCGTACATCAATGCATAA---GCATCGATGCATCCCAGT
1 AATAAAACATCGAATGCAATTCGTACATCAATGCATAAGTTGCATCGATGCATCCTATT
565349 AATATACAACATCGAAT
1 AATA-A-AACATCGAAT
565366 ACATTTTGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
56 19 0.29
57 1 0.02
58 10 0.15
59 30 0.46
60 5 0.08
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (59 bp):
AATAAAACATCGAATGCAATTCGTACATCAATGCATAAGTTGCATCGATGCATCCTATT
Found at i:565310 original size:59 final size:61
Alignment explanation
Indices: 565240--565403 Score: 180
Period size: 56 Copynumber: 2.8 Consensus size: 61
565230 TAAAATAAAT
* *
565240 ACATCGAATGCAATTCGTGCATCGATGCATAAGTTGCATCGATGCATCCTATTAAT-GA-A
1 ACATCGAATGCAATTCGTGCATCGATGCATAAGTTGCATCGATGCATCCCAGTAATAGACA
* * *
565299 ACATCGAATGCAATTCGTACATCAATGCATAA---GCATCGATGCATCCCAGTAATATACA
1 ACATCGAATGCAATTCGTGCATCGATGCATAAGTTGCATCGATGCATCCCAGTAATAGACA
* * * *
565357 ACATCGAATAC-ATT-TTGCACCGATGCATCAGTAGTGCATCGATGCAT
1 ACATCGAATGCAATTCGTGCATCGATGCATAAGT--TGCATCGATGCAT
565404 ACCTTCATTA
Statistics
Matches: 87, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
56 30 0.34
57 4 0.05
58 11 0.13
59 30 0.34
61 12 0.14
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.27
Consensus pattern (61 bp):
ACATCGAATGCAATTCGTGCATCGATGCATAAGTTGCATCGATGCATCCCAGTAATAGACA
Found at i:569388 original size:63 final size:62
Alignment explanation
Indices: 569260--569474 Score: 238
Period size: 63 Copynumber: 3.5 Consensus size: 62
569250 TTGAAGGTGT
* * * * ** *
569260 ATCGATGCACAGGAAGTGCATCGATGCA-CTCTTTAAATAAT-ACATCGAATGCAATTCGTGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCCAGT-AATAATAAAATCGAATGCAATTCGTGC
*
569321 ATCGATGCATAAGTAGTGCATCGATGCAT-CCATTAATAATGAAAAATCGAATGCAATTCGTGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCCAGTAATAAT--AAAATCGAATGCAATTCGTGC
** * * **
569384 ATCGATGCATAAGTAGTGCATCGATGCATCCCAGTAATAATACCATCGAATACATTTTATGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCCAGTAATAATAAAATCGAATGCAATTCGTGC
* *
569446 ACCGATGCATCAGTAGTGCATCGATGCAT
1 ATCGATGCATAAGTAGTGCATCGATGCAT
569475 ACCTTCATTA
Statistics
Matches: 134, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
60 6 0.04
61 28 0.21
62 42 0.31
63 48 0.36
64 10 0.07
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (62 bp):
ATCGATGCATAAGTAGTGCATCGATGCATCCCAGTAATAATAAAATCGAATGCAATTCGTGC
Found at i:574624 original size:2 final size:2
Alignment explanation
Indices: 574550--574606 Score: 73
Period size: 2 Copynumber: 29.0 Consensus size: 2
574540 GTCCATATGC
**
574550 AT AT AGT AT AT AT AT AT -T AT -T AT AT GC AT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
574591 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
574607 TTACTTAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
1 2 0.04
2 44 0.92
3 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (2 bp):
AT
Found at i:575657 original size:17 final size:16
Alignment explanation
Indices: 575635--575700 Score: 53
Period size: 17 Copynumber: 3.9 Consensus size: 16
575625 TCTTTTATTT
575635 TTTTTTATTTCTTTTCA
1 TTTTTTATTTCTTTT-A
** *
575652 TTTTTTAAATCTAGTTA
1 TTTTTTATTTCT-TTTA
*
575669 GCTTTTTATTTCTTTTTA
1 -TTTTTTATTTC-TTTTA
575687 TTTTTTATTT-TTTT
1 TTTTTTATTTCTTTT
575701 GGTTTGTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
15 4 0.11
17 20 0.53
18 13 0.34
19 1 0.03
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTTATTTCTTTTA
Found at i:576040 original size:11 final size:11
Alignment explanation
Indices: 576014--576055 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
576004 CGTACAAGAA
576014 TATTTTATTATTT
1 TATTTT-TT-TTT
576027 TATTTTTTTTT
1 TATTTTTTTTT
*
576038 TATTTTTTTTA
1 TATTTTTTTTT
576049 TATTTTT
1 TATTTTT
576056 CCTTTGATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
11 20 0.71
12 2 0.07
13 6 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TATTTTTTTTT
Found at i:579123 original size:2 final size:2
Alignment explanation
Indices: 579104--579144 Score: 57
Period size: 2 Copynumber: 20.5 Consensus size: 2
579094 ATTTTTGTCC
*
579104 AT AT AC AT AT AGT AT AT AT AT -T AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
579145 CTTAAATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 32 0.91
3 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:580180 original size:17 final size:17
Alignment explanation
Indices: 580160--580235 Score: 59
Period size: 17 Copynumber: 4.5 Consensus size: 17
580150 TCTATTATGT
580160 TTTCTTTTATTTTTTTA
1 TTTCTTTTATTTTTTTA
580177 TTTCTTTTCA-TTTTTTA
1 TTTCTTTT-ATTTTTTTA
** * **
580194 AATCTAGTTAGCTTTTTA
1 TTTCT-TTTATTTTTTTA
580212 TTTCTTTT-TATTTTTTA
1 TTTCTTTTAT-TTTTTTA
580229 TTT-TTTT
1 TTTCTTTT
580236 GGTTTGTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
16 4 0.09
17 30 0.65
18 12 0.26
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.75
Consensus pattern (17 bp):
TTTCTTTTATTTTTTTA
Found at i:580190 original size:23 final size:23
Alignment explanation
Indices: 580144--580190 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
580134 CTTAATCATA
*
580144 TATTTTTCTATTATGTTTTCTTT
1 TATTTTTCTATTATCTTTTCTTT
*
580167 TATTTTTTTATT-TCTTTTCATTT
1 TATTTTTCTATTATCTTTTC-TTT
580190 T
1 T
580191 TTAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.77
Consensus pattern (23 bp):
TATTTTTCTATTATCTTTTCTTT
Found at i:580569 original size:13 final size:14
Alignment explanation
Indices: 580551--580583 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
580541 TACAAGAATA
580551 TTTTATTAT-TATT
1 TTTTATTATGTATT
*
580564 TTTTATTTTGTATT
1 TTTTATTATGTATT
580578 TTTTAT
1 TTTTAT
580584 ATTTTTCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTATTATGTATT
Found at i:581494 original size:18 final size:19
Alignment explanation
Indices: 581459--581495 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
581449 CACGGAATGT
581459 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
581479 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
581496 TGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:584020 original size:11 final size:11
Alignment explanation
Indices: 584004--584029 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
583994 AACCGAAATT
584004 TATAAATAATA
1 TATAAATAATA
584015 TATAAATAATA
1 TATAAATAATA
584026 TATA
1 TATA
584030 CTATATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TATAAATAATA
Found at i:584158 original size:17 final size:17
Alignment explanation
Indices: 584111--584158 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
584101 GCCCCTAAAG
584111 TTAAATAATATATATAATA
1 TTAAATAAT-TA-ATAATA
* *
584130 TTAAATATTTAATAATT
1 TTAAATAATTAATAATA
*
584147 TTAATTAATTAA
1 TTAAATAATTAA
584159 CCGATTTCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 15 0.60
18 2 0.08
19 8 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAAATAATTAATAATA
Found at i:584415 original size:2 final size:2
Alignment explanation
Indices: 584408--584467 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
584398 AATTTTAATC
584408 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
584450 CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT
584468 ATATATATAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:584472 original size:2 final size:2
Alignment explanation
Indices: 584467--584510 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
584457 TCTCTCTCTC
584467 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
584509 TA
1 TA
584511 ATTGTACTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:598010 original size:14 final size:14
Alignment explanation
Indices: 597988--598034 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
597978 TGCAAAAGAA
*
597988 AATTAATATAGTTT
1 AATTTATATAGTTT
598002 AATTTATATA----
1 AATTTATATAGTTT
598012 AA-TTATATAGTTT
1 AATTTATATAGTTT
598025 AATTTATATA
1 AATTTATATA
598035 AAGAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
13 2 0.07
14 16 0.59
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
AATTTATATAGTTT
Found at i:598021 original size:23 final size:24
Alignment explanation
Indices: 597987--598036 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
597977 ATGCAAAAGA
597987 AAATTAATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
598011 AAATT-ATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
598034 AAA
1 AAA
598037 GAAAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
AAATTAATATAGTTTAATTTATAT
Found at i:598213 original size:7 final size:7
Alignment explanation
Indices: 598203--598296 Score: 55
Period size: 7 Copynumber: 13.6 Consensus size: 7
598193 ATGGTTTACA
598203 GTTTAGG
1 GTTTAGG
*
598210 GTTTAGA
1 GTTTAGG
* *
598217 ATTTAAG
1 GTTTAGG
598224 GTTTAGG
1 GTTTAGG
*
598231 GTTTATG
1 GTTTAGG
**
598238 GTTTAAC
1 GTTTAGG
*
598245 GTTTAGT
1 GTTTAGG
*
598252 GTTTATG
1 GTTTAGG
**
598259 GTTTAAA
1 GTTTAGG
*
598266 GTTTA-T
1 GTTTAGG
*
598272 GATTAGG
1 GTTTAGG
*
598279 GTTTATG
1 GTTTAGG
*
598286 ATTTAGG
1 GTTTAGG
598293 GTTT
1 GTTT
598297 CTATAATTTA
Statistics
Matches: 63, Mismatches: 23, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
6 4 0.06
7 59 0.94
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (7 bp):
GTTTAGG
Found at i:598242 original size:21 final size:21
Alignment explanation
Indices: 598192--598296 Score: 90
Period size: 21 Copynumber: 5.0 Consensus size: 21
598182 AGTGCTAGTC
598192 TATGGTTTACA-GTTTAGGGTT
1 TATGGTTTA-AGGTTTAGGGTT
*
598213 TA-GAATTTAAGGTTTAGGGTT
1 TATG-GTTTAAGGTTTAGGGTT
* *
598234 TATGGTTTAACGTTTAGTGTT
1 TATGGTTTAAGGTTTAGGGTT
* * *
598255 TATGGTTTAAAGTTTA-TGAT
1 TATGGTTTAAGGTTTAGGGTT
* * *
598275 TAGGGTTTATGATTTAGGGTT
1 TATGGTTTAAGGTTTAGGGTT
598296 T
1 T
598297 CTATAATTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
20 17 0.25
21 50 0.74
22 1 0.01
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.49
Consensus pattern (21 bp):
TATGGTTTAAGGTTTAGGGTT
Found at i:598284 original size:13 final size:14
Alignment explanation
Indices: 598204--598296 Score: 66
Period size: 14 Copynumber: 6.7 Consensus size: 14
598194 TGGTTTACAG
598204 TTTAGGGTTTA-GAA
1 TTTAGGGTTTATG-A
* * *
598218 TTTAAGGTTTAGGG
1 TTTAGGGTTTATGA
* *
598232 TTTATGGTTTAACG-
1 TTTAGGGTTT-ATGA
* *
598246 TTTAGTGTTTATGG
1 TTTAGGGTTTATGA
**
598260 TTTAAAGTTTATGA
1 TTTAGGGTTTATGA
598274 -TTAGGGTTTATGA
1 TTTAGGGTTTATGA
598287 TTTAGGGTTT
1 TTTAGGGTTT
598297 CTATAATTTA
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
13 13 0.21
14 47 0.75
15 3 0.05
ACGTcount: A:0.23, C:0.01, G:0.27, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:598333 original size:49 final size:49
Alignment explanation
Indices: 598289--598381 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 49
598279 GTTTATGATT
** ** *
598289 TAGGGTTTCTATAATTTATATACTTTA-TTACTTTATATAGTTTATGCA
1 TAGGGTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTATGCA
*
598337 TAGTGTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTA
1 TAGGGTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTA
598382 CGTATATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
48 21 0.55
49 17 0.45
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.51
Consensus pattern (49 bp):
TAGGGTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTATGCA
Found at i:598413 original size:13 final size:13
Alignment explanation
Indices: 598371--598416 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 13
598361 TAATTTACTT
598371 TATATAGTTTACGTA
1 TATATAGTTTA--TA
598386 TATATAGGTTATATA
1 TATATA-GTT-TATA
598401 TATATAGTTTATA
1 TATATAGTTTATA
598414 TAT
1 TAT
598417 GCTATACATG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.24
14 3 0.10
15 14 0.48
16 3 0.10
17 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.11, T:0.50
Consensus pattern (13 bp):
TATATAGTTTATA
Found at i:598925 original size:14 final size:14
Alignment explanation
Indices: 598908--598946 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
598898 GTGTGTATGG
*
598908 TTTAGAGTTTAAGA
1 TTTAAAGTTTAAGA
* *
598922 TTTAAAGTTTATGT
1 TTTAAAGTTTAAGA
598936 TTTAAAGTTTA
1 TTTAAAGTTTA
598947 GGGTTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (14 bp):
TTTAAAGTTTAAGA
Found at i:598987 original size:15 final size:15
Alignment explanation
Indices: 598967--599001 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
598957 TAATAAACTA
598967 TATATCTAATTACTT
1 TATATCTAATTACTT
598982 TATATCTAATTACTT
1 TATATCTAATTACTT
598997 TATAT
1 TATAT
599002 AGTTTATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATCTAATTACTT
Found at i:599032 original size:2 final size:2
Alignment explanation
Indices: 599021--599051 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
599011 ATAGTATTTC
599021 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
599052 ATCTATAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:599155 original size:4 final size:4
Alignment explanation
Indices: 599139--609661 Score: 11001
Period size: 4 Copynumber: 2657.2 Consensus size: 4
599129 TGTATAGTTT
* ** *
599139 ATAC ATAC GTAC ATAC ATAC ATAC ATAC ATGT ATAC ATAG ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
599187 ATGC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
599235 ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAA ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
599283 ATAT ATGC ATAC ATGC ATAC ATGC ATGC ATAC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
599331 ATAC ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
599379 ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
599427 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
599475 ATAC ATAC ATAC ATAC ATAC ATAT ATAC GTAC ATAC CTGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
599523 ATAC ATGC ATAC CTGC ATAC ATGC ATAC CTGC ATAC GTAC ATAC CTGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
599571 ATAC ATAC ATAC GTAC ATAC CTAC ATAC GTAC ATAC CTGC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
599619 ATAC CTGC ATAC ATAC ATAC GTAC ATAC CTAC ATAC GTAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * * *
599667 ATAC ATAC ATAC CTGT ATAC GTAC ATAC CTGC ATAC ATAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
599715 ATAC CTAC ATAC GTAC ATAC CTGC ATAC ATGC ATAC CTAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
599763 ATAC CTGC ATAC ATGC ATAC CTGC ATGC ATGC ATGC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
599811 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
599859 ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
599907 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
599955 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
600003 ATAC ATAC ATAC ATAC ATAC ATAT ATAC GTAC ATAC CTGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
600051 ATAC CTGC ATAC ATAC ATAC ATGC ATAC GTAC ATAC CTGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
600099 ATAC ATAC ATAC ATAC ATAC ATAT ATAC GTAC ATAC CTGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
600147 ATAC GTAC ATAC CTAC ATAC GTAC ATAC ATGC ATAC CTGC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * *
600195 ATAC CTGT ATAC ATAC ATAC ATAC GTAC ATAC CTAC ATAC GTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
600243 CTGC ATAC ATGC ATAC CTAC ATAC GTAC ATAC CTGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
600291 CTGC ATGC ATGC ATGC ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
600339 ATAC ATGC ATAC ATAC ATGC ATAC ATGC ATAC ATCC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
600387 ATAC ATGC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
600435 AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
600481 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
600529 GTAC ATAC GTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
600577 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * *
600625 ATAC ATAC ATAC ATGT ATAC ATAG ATAC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
600673 ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
600719 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
600767 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
600815 ATAC ATGC ATAC ATAA ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
600862 ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
600910 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
600958 ATAC -TAC GTAC ATAC ATAC ATAC ATAC ATAG ATAC ATATGC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC
* * * *
601005 ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAT ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
601053 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
601101 ATGC ATAC ATAC ATGC ATAC ATGC ATAC AT-C A-AGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC
* *
601148 --AC ATAC ATAT ATAC AT-- ATAC ATAC ATAC A-AC ATAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
601191 ATAC ATAC ATAC ATAC ATAC ATA- ATAC ATAT ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
601238 ATAC ATGC ATAC ATAC ATGC A-AGC ATAC ATAC ATAC ATAC ATAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC
601286 ATA- ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
601331 ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
601377 ATAC ATAC ATAC ATAC ATGC ATAC AT-C ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
601424 ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
**
601472 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGT ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
601520 ATAC ACAC ATAC --AC ATAC ATGTAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC A--TAC ATAC ATAC ATAC ATAC ATAC ATAC
601568 ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
601615 ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
601659 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGCAC ATAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT--AC ATAC ATAC
601709 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
601757 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
601805 AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
601852 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
601900 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
601948 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
601996 ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
602044 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
602092 ATAC ATAC ATAC ATAC AT-- ATAC ATGC ATAC ATAC ATACGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC
* * * * * * * * *
602140 ATGC AT-- ATAC CTGC ATGC ATGC ATAC ATGC -TAC AAAG ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
602185 AT-C ATGC ATGC ATGC ATGC ATAC ATATGC ATGC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA--C ATAC ATAC ATAC ATAC ATAC
* * * * * *
602234 ATGC ATAC ATAC ATGC AT-C ATAC ATAC ATAC ATGC CTAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
602281 ATAC ATAC ATAC ATGC ATAC ATGC ATAC AT-C ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
602328 ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
602375 ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
602422 ATAC TATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
602471 ATAC ATAC AGAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
602519 ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
602566 AT-C ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
602613 -TGC A-GC ATAC ATAC ATAC ATGC ATAC AT-C ATAC ATGC ATAC A-GC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
602657 ATAC ATAC ATAC ATGCAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
602707 ATAC AT-C ATAC ATAC ATAC ATAC CTAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
602753 ATAC -TAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC AT-- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
602798 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
602846 ATAC ATAC ATAC ATAC AT-C ATAC ATGC ATAC ATGC AT-C ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
602892 ATAC ATGC ATAC ATGCAC ATGC ATAC ATGC ATAC ATAC ATAC AT-C ATAC
1 ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
602941 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
602989 ATAC AT-- ATAC ATAC ATAT ATAC A-A- ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
603033 ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
603080 ATAC ATGC ATAC ATGC ATAC ATGC ATAT ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603126 ATAC ATAC ATTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603175 ATAC TATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603224 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603272 ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603317 ATAC ATAC ATACC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603366 AT-- ATAC ATAC --AC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603409 ATAC ATAC ATAC ATAC ATAC ATAC ACTAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC
603458 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603506 ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
603553 ATAC ATAC ATAC ATAC AT-- ATAC ATAC --AC ATAC AT-- ATCAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC
* * ** * * ** * * * * *
603596 ATAC TTTA- TTAC -TTT ATAT GTTT ATGC ATAGTG TTTC TATA- ACTAT
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATA--C ATAC -ATAC A-TAC
* * * * * * * * *
603642 ATA- AGTA- ATTTAC TTTAT ATAGT TTAC GTATAT ATAGG TTAT ATAT ATA-
1 ATAC A-TAC A--TAC -ATAC ATA-C ATAC --ATAC ATA-C ATAC ATAC ATAC
** * * * * ** * * * *
603691 ATTT ATAT ATGC TATAC AT-G GTTT ATAC ATAC ATA- TTAT ATAAA ATTAT
1 ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC A-TAC
* * * * * * * *
603740 TTAA ATGTAA ATTAT ATA- A-AC ATGA- TTA- ATTA- AGT-G TTAA ATA-
1 ATAC A--TAC A-TAC ATAC ATAC AT-AC ATAC A-TAC A-TAC ATAC ATAC
* * ** * * * * * * ** * * * * **
603783 ATTAG TTTT TTGATC GGT-T TTAGG GTTT ATGAT TTA- A-AC CTAAGC CTTT
1 A-TAC ATAC AT-A-C -ATAC ATA-C ATAC AT-AC ATAC ATAC AT-A-C ATAC
* * * * ** ** * * ** ** **
603832 ATTAC TTTA- TTAC -TAC AGTGGAT TTA- ATTTG GGAGT TTGG ATTT ATTT
1 A-TAC -ATAC ATAC ATAC A-T--AC ATAC A-TAC ATA-C ATAC ATAC ATAC
* ** * * * * * * * * ** * * *
603880 TTTG AT-C GAGTTTCC CT-C TGGTTC GA-AT TTAGT TTGG A-AT TTGAA
1 ATAC ATAC -A---TAC ATAC --ATAC -ATAC ATA-C ATAC ATAC AT-AC
* ** * * * * * * ** *
603925 ATTCC ACGCC A-AA ATGAAC AAAA ATTGGAGC GT-T TTGA- ATGGTT TTAC
1 A-TAC A-TAC ATAC AT--AC ATAC A-T--A-C ATAC AT-AC AT--AC ATAC
* ** * * ** * * * * * ** * * ** *
603973 TTTT TTTC CCAA ATA- AT-T TTGC TTTTTT TTTC CCAC TTAAGC AT-C
1 ATAC ATAC ATAC ATAC ATAC ATAC --ATAC ATAC ATAC AT-A-C ATAC
* * * * * ** * * * * * *
604018 -TTC ATGC TTGA- GTA- ATA- ATA- AAAC CCAA AAAA ATCC ATTTGC ATTAGT
1 ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A--TAC A-TA-C
* ** * * * * * **
604066 GTTT TTCC ATTTAC ATTAGTT TTAC ATAGGGC CTAC ATA- AGCCC ACT-C
1 ATAC ATAC A--TAC A-TA--C ATAC ATA---C ATAC ATAC A-TAC A-TAC
* ** * * * * * * *
604114 TTTT ATTAC AT-- ATAT ATAC ATTAGTG TTAGTC TATTAT TTAT ATTAGG
1 ATAC A-TAC ATAC ATAC ATAC A-TA--C ATA--C -A-TAC ATAC A-TA-C
* ** * * ** * ** ** * * ** * * * * ** **
604162 GTTT AGT-G TTTT GTGT ATGGT TTAG AGTTT AGAT TTAA AGTTT ATGTT
1 ATAC A-TAC ATAC ATAC AT-AC ATAC A-TAC ATAC ATAC A-TAC AT-AC
* * * * * * ** * * * **
604210 TTAA AGTTTAGG GT-T TTTT TTA- ATAA ACTAT ATATC -TA- ATTAC -TTT
1 ATAC A---TA-C ATAC ATAC ATAC ATAC A-TAC ATA-C ATAC A-TAC ATAC
* * * * * * * * *
604256 ATATC -TA- ATTAC TTTAT ATAGTT ATGC ATAGT ATTTC TATAT ATAT ATAT
1 ATA-C ATAC A-TAC -ATAC ATA--C ATAC ATA-C A-TAC -ATAC ATAC ATAC
* * * * * * * * * *
604306 ATAT ATAT ATAT ATAT ATATT ATA- ATAG ATTAC TTAT ATTAG TTCAC
1 ATAC ATAC ATAC ATAC ATA-C ATAC ATAC A-TAC ATAC A-TAC AT-AC
* * * * ** *
604353 ATCAT ATAT ATAC TATA- TTA- ATATA ATA- ATTT ATA- A-AC TATAT
1 AT-AC ATAC ATAC -ATAC ATAC ATA-C ATAC ATAC ATAC ATAC -ATAC
** * * ** * ** *
604396 ATTTT GTAT AGTTT ATAC ATAC GTAC ATAC --AC ATAC ATAC ATGT ATAG
1 A-TAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
604444 ATAC ATAC ATGC ATAC ATAC -TAC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
604491 -TAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC A-GC ATAC ATAA ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
604535 ATGC ATAC ATGC ATAC ATGC ATGC ATAC ATGC ATGC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
604583 ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
604631 ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
604679 AGAC ATAC --AC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
604723 ATAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC ATAC AT-- ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
604770 ATAC CTGC ATAC ATGC ATAC AT-G ATAC CTGC ATAC ATGC ATAC CTGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
604817 ATAC GTAC ATAC CTGC ATAC ATAC ATAC GTAC ATAC CTAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
604865 ATAC CTGC ATAC GTAC ATAC CTGC ATAC ATAC ATAC GTAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
604913 ATAC GTAC ATAC ATGC ATAC ATAC ATAC CTGC ATAC GTAC ATAC CTGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
604961 ATAC ATAC ATAC GTAC ATAC CTAC ATAC GTAC ATAC CTGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
605009 ATAC CTAC ATAC GTAC ATAC CTGC ATAC ATGC ATAC CTGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
605057 ATGC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATTGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC
605106 ATAC ATAC ATAC ATAC ATGCAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
605155 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
605202 ATAC AGTAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
605251 -TAC ATAC ATAC ATAC ATAC AT-C -TAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
605294 ATAC AT-- ATAC GTAC ATAC -TGC ATAC ATGC ATAC CTGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
605339 ATAC ATGC ATAC GT-C ATACC CTGC ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
605387 AT-C ATAT ATAC GTAC ATAC CTGC ATAC ATAC ATAC GTAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * **
605434 ATAC GTAC ATAC ATGC ATAC CTGC ATAC GTAC ATAC CTGT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
605482 ATAC GTAC ATAC CTAC ATAC GTAC ATAC CTGC ATAC ATGC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
605530 ATAC GTAC ATAC CTGC ATAC ATGC ATAC CTGC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
605578 ATAC ATGC ATGC ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
605626 ATGC ATAC ATAC ATGC ATAC ATGC ATAC ATCC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
605674 ATGC ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
605722 ATCAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC
1 AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
605771 ATAC AT-C ATAC ATAC ATAC AATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
605817 ATAC GTAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
605864 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT GTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * *
605912 ATAC ATGT ATAC AT-- ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
605958 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACCTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A--TAC ATAC
*
606008 ATAC ATAC ATAC ATAC AT-- ATAT ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
606054 ATAG ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAA ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
606102 ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAT ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
606147 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
606194 ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC GTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
** * * * *
606242 ATAC ATGT ATAC ATAG ATAC ATAT ATGC ATAC ATAC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
606290 ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
606338 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAA ATAC ATAT ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
606386 ATGC ATAC ATAC ATGC ATAC ATGC ATAC ATGC A-AGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC
* *
606434 ATAC ATAC ATAT ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * ** *
606480 ATAC ATAC ATAC ATAC ATAC ATAA ATAC ATAT AGCC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
606528 ATGC ATAC ATGC ATAC ATGC A-AGC ATAC ATACC ATAC ATAC ATAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATA-C ATAC ATAC ATAC ATAC
* * *
606577 A-AT ATAC ATAC AT-C ATAC ATAC AGAT ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
606621 ATAC ATAC ATAC ATAC ATAC ATAC ATA- ATAC ATAC ATAC ATACC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC
*
606669 --AC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
606713 ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
**
606761 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
606809 ATAC ATAC ACAC ATAC A-AC ATAC AGT-- ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC
606855 ATAC ATAC ATAC ATAC AT-C A-AC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
606900 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
606946 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
606994 ATAC ATAC ATAT ATAC ATAC ATAC ATAC ACAC ATAC ATAC AT-C ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
607041 ACAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607088 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607134 ATAC AT-- ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
607179 ATAC AGAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607226 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607271 ATAC AT-C ATAC AATAC ATAC ATAC ATAC ATAC AATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC
*
607320 ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607368 ATAC ATAC ATAC ATAC ATAC ATAC AATAC A-AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC
607416 ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607463 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607511 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607559 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
607607 ATAC ATGC AT-- ATAC ATAC ATGC ATGC ATAC ATGC ATAT ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * * *
607653 ATGC ATGC ATAC ATGC ATAC AAAG ATGC ATAC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
607701 ATGC ATAC ATAT ATGC ATGC ATGC ATGC ATGC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
607749 ATGC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
607797 ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
607845 ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATA- ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
607890 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
607937 CTAC ATAC --AC ATAC -TAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
607981 ATAC ATAC ATAC ATAC ATAC ATAAC ATAC AT-C ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC
* *
608029 ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
608077 ATAC ATAC ATGC ATAC ATGC ATGC ATAC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
608125 ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
608173 ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
608221 ATAC CTAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
608267 ATAC ATAC ATAC ATAC ATAC A-CC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
608314 AT-C ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
608361 ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
608409 ATAC ATAC ATAC ATAC ATAC A-AC A-AC ATAC ATAC ATAT ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
608455 ATAC ATAC ATAC --AC ATAC ATAC ATAC A-AC A-AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
608499 ATAC ATAC ATAC ATAC ATAC ATGC AT-C ATAC AT-- ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
608544 ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
608589 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
608637 AT-- ATAC ATAC ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
608682 ATAC ATAC -TAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
608728 ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATA- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
608774 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATA- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
608820 ATAC ATAC -TAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
608866 ATAC ATAC ATAC AT-C ATAC A-AC AGAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
608912 ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
608957 ACAAC ATAC ATAC -TAC ATAC ATAC ATAC -TAC ATAC ATAC ACAC ATAC
1 A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
609004 ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
609050 ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATACC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC
609097 AT-C ATAC --AC ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATA-
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
609140 ATAC -TAC ATAC ATAC ATAC ATAC A-A- ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
609184 ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
609229 ATAC A-AC ATAC ATAC ATAC --AC ATAC ATAC A-AC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
609273 -TAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ACAAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC
* *
609320 ATAC -TAC ATAC ATAC ACAC ATAC AT-- ATAT ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
609365 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
609413 ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
609461 ATGC ATGC ATGC ATAC ATAT ATAC ATAC ATGC ATGC ATGC ATGCAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT--AC ATAC
* * * * * * *
609511 ATTC ATGC ATGCAC ATAC ATGC ATGC ATGC ATGCAC ATAC ATTC ATGC
1 ATAC ATAC AT--AC ATAC ATAC ATAC ATAC AT--AC ATAC ATAC ATAC
* * * * *
609559 ATGCAC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC
1 AT--AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
609609 ATGC ATAC ATGC ATAC ATGC ATAC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
609657 ATAC A
1 ATAC A
609662 GACAGACAGA
Statistics
Matches: 8952, Mismatches: 1146, Indels: 842
0.82 0.10 0.08
Matches are distributed among these distances:
2 118 0.01
3 349 0.04
4 8204 0.92
5 185 0.02
6 83 0.01
7 10 0.00
8 3 0.00
ACGTcount: A:0.44, C:0.24, G:0.05, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:604300 original size:2 final size:2
Alignment explanation
Indices: 604293--604329 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
604283 ATAGTATTTC
604293 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
604330 ATAGATTACT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:609908 original size:8 final size:8
Alignment explanation
Indices: 609895--609956 Score: 52
Period size: 8 Copynumber: 7.0 Consensus size: 8
609885 ATTCCCTTTA
609895 AATTTCTC
1 AATTTCTC
609903 AATTTCCCTCC
1 AATTT--CT-C
*
609914 AAATTCTC
1 AATTTCTC
609922 AATTTCTC
1 AATTTCTC
*
609930 TATATTCTC
1 AAT-TTCTC
609939 AAAATTTCTC
1 --AATTTCTC
609949 AATTTCTC
1 AATTTCTC
609957 TCTAAGTTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
8 23 0.52
9 7 0.16
10 7 0.16
11 7 0.16
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (8 bp):
AATTTCTC
Done.