Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007728.1 Hibiscus syriacus cultivar Beakdansim tig00109979_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71199

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38--94
21
2.7
21
75
0
60
22
15
21
40
1.91
1175--1701
91
5.8
91
89
2
769
25
21
14
38
1.91
1175--1701
181
2.9
180
88
2
774
25
21
14
38
1.91
2744--2887
58
2.6
55
78
11
154
41
21
9
27
1.83
4854--4912
7
8.1
7
83
12
75
3
13
1
81
0.90
4854--4912
21
2.8
21
87
7
84
3
13
1
81
0.90
4854--4955
21
4.9
21
71
23
56
5
14
2
76
1.09
8394--8486
42
2.2
42
86
0
123
34
20
19
25
1.96
8565--8719
59
2.6
59
88
3
224
43
17
9
30
1.80
11029--11092
33
2.0
31
87
6
92
73
6
3
17
1.17
11339--11415
38
2.0
40
84
5
104
63
5
7
23
1.41
13070--13103
2
17.0
2
100
0
68
50
0
0
50
1.00
14454--14567
36
3.2
36
87
1
158
24
20
20
35
1.96
14464--14593
35
3.7
36
79
3
122
26
18
18
36
1.94
20365--20437
38
1.9
38
97
2
139
12
10
36
39
1.78
21011--21056
18
2.8
16
83
9
65
30
30
6
32
1.83
21392--21423
16
2.0
16
100
0
64
31
18
6
43
1.75
21393--21432
16
2.5
16
91
0
62
32
17
7
42
1.77
21433--21638
21
10.4
21
75
11
186
20
19
25
34
1.96
21433--21657
40
5.7
40
76
12
180
20
20
24
35
1.96
21428--21638
61
3.6
61
85
4
283
21
19
24
34
1.96
21590--21618
14
2.1
14
100
0
58
31
13
20
34
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21475--21660
21
9.6
19
73
14
112
19
19
23
37
1.94
22059--22149
19
4.4
20
78
17
105
32
27
4
35
1.77
22059--22151
44
2.2
41
83
9
118
34
26
4
34
1.76
23411--23470
20
3.0
20
75
15
61
53
6
5
35
1.49
24033--24062
2
15.5
2
93
6
53
53
0
0
46
1.00
24579--24651
6
12.2
6
97
0
119
4
16
49
30
1.64
24926--24980
22
2.5
22
75
0
56
29
9
23
38
1.85
30513--30561
5
9.8
5
93
0
62
6
40
36
16
1.73
30559--30619
6
10.2
6
96
0
95
4
16
49
29
1.66
30894--30948
22
2.5
22
75
0
56
29
9
23
38
1.85
35865--35908
20
2.3
19
85
11
63
20
25
9
45
1.80
35871--35908
20
1.9
20
94
0
67
21
23
10
44
1.83
39602--39810
42
5.0
41
93
1
355
34
26
21
17
1.96
40699--40733
13
2.6
14
86
13
56
28
22
34
14
1.93
46402--48054
543
3.0
541
89
4
2354
40
18
12
28
1.87
47572--47619
2
24.0
2
100
0
96
50
0
0
50
1.00
48037--48290
42
6.0
41
87
5
321
35
24
21
17
1.95
51267--51311
18
2.5
18
100
0
90
48
26
11
13
1.75
54729--54858
62
2.1
62
95
1
235
30
7
11
50
1.67
55123--55185
11
5.9
11
69
14
51
57
3
1
38
1.24
55232--55261
7
4.3
7
91
0
51
46
36
0
16
1.47
55328--55381
14
3.9
14
85
0
81
48
25
1
24
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55313--55366
21
2.6
21
75
0
63
44
27
3
24
1.70
57816--57856
18
2.4
17
84
15
57
0
9
9
80
0.91
60340--60371
2
16.0
2
100
0
64
50
0
0
50
1.00
60714--60792
22
3.8
21
78
13
83
22
21
27
27
1.99
63580--63613
17
2.0
17
88
11
52
55
5
2
35
1.39
63992--64202
97
2.2
95
83
9
270
33
9
12
45
1.74
65131--65181
2
25.5
2
100
0
102
50
0
0
49
1.00
65214--65253
2
21.0
2
90
10
66
50
0
0
50
1.00
68079--68109
16
1.9
16
93
0
53
29
29
16
25
1.96

Tables:   1

The End!