Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007729.1 Hibiscus syriacus cultivar Beakdansim tig00109980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1111098
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 7
Found at i:9170 original size:19 final size:20
Alignment explanation
Indices: 9135--9172 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9125 ATTTAGTTAA
*
9135 TTTTAAATTTGAGATGTATT
1 TTTTAAATTTGAAATGTATT
9155 TTTTAAATTT-AAATGTAT
1 TTTTAAATTTGAAATGTAT
9173 ATATTTGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTAAATTTGAAATGTATT
Found at i:15803 original size:20 final size:20
Alignment explanation
Indices: 15780--15828 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
15770 TATTCCTTTC
15780 TTCATATATTTATTAT-TTTT
1 TTCATATATTT-TTATGTTTT
*
15800 TTCATATATTTTTTTGTTTT
1 TTCATATATTTTTATGTTTT
15820 TTCAT-TATT
1 TTCATATATT
15829 GATGATGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 7 0.26
20 20 0.74
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.71
Consensus pattern (20 bp):
TTCATATATTTTTATGTTTT
Found at i:16676 original size:31 final size:31
Alignment explanation
Indices: 16631--16689 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
16621 GTCATATGCT
*
16631 ACATCATTACTTTAGTCATGTGTCACATGTC
1 ACATCATTACTTTAGTCACGTGTCACATGTC
* * *
16662 ACATTATTATTTTAGTGACGTGTCACAT
1 ACATCATTACTTTAGTCACGTGTCACAT
16690 ACTACATCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.41
Consensus pattern (31 bp):
ACATCATTACTTTAGTCACGTGTCACATGTC
Found at i:22908 original size:2 final size:2
Alignment explanation
Indices: 22903--22931 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22893 GCGCACGCGC
22903 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22932 GGGTATAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23303 original size:5 final size:5
Alignment explanation
Indices: 23295--23319 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
23285 AATTGATCAG
23295 ATCGA ATCGA ATCGA ATCGA ATCGA
1 ATCGA ATCGA ATCGA ATCGA ATCGA
23320 GCAAAAATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
ATCGA
Found at i:24282 original size:24 final size:25
Alignment explanation
Indices: 24255--24307 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
24245 GCATGATTTT
* *
24255 ATTTTAAAAGA-ATGAATTTATAAA
1 ATTTTAAAAGAGACGAACTTATAAA
24279 ATTTTAAAAGATGACGAACTTATAAA
1 ATTTTAAAAGA-GACGAACTTATAAA
24305 ATT
1 ATT
24308 ATAAGAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
26 14 0.56
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36
Consensus pattern (25 bp):
ATTTTAAAAGAGACGAACTTATAAA
Found at i:26934 original size:40 final size:40
Alignment explanation
Indices: 26845--27342 Score: 440
Period size: 41 Copynumber: 12.2 Consensus size: 40
26835 CACTTTTAAC
* * * * *
26845 GGCGTTTTTTAAACAAACACCGGTAAATACTTGTTCTTTAGT
1 GGCG-TTTTTATATAAACGCCGCTAAATAC-TGTACTTTAGT
* *
26887 GGCGTTTTTATATAAACGCCGCTAAATACTGTGCTTTAAT
1 GGCGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGT
26927 GGCGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGT
1 GGCGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGT
* *
26967 GGTGTTTTTATATAAACGCCGCTAAATAATGTACTTTAGT
1 GGCGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGT
* * * * * *
27007 GGCGTTCTAAGCACAAACGCCGCTAAATGCTCATACTTTAGT
1 GGCGTTTTTA-TATAAACGCCGCTAAATACT-GTACTTTAGT
* * * *
27049 GGCATTTCTATATAAACGCCGCTAAATACTATTCTTTAGT
1 GGCGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGT
* * * * * *
27089 GGCGTTTTAAGCACAAGCGCCACTAAATTCTCGTACTTTAGT
1 GGCGTTTTTA-TATAAACGCCGCTAAATACT-GTACTTTAGT
* * ** * *
27131 GGCATTTTTGTATAAATACAGCTAAATACTATACTTTAGT
1 GGCGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGT
* * * * *
27171 TGCGTTTCTATAAAAACGCCGCTAAATACCCGTGCTTTAGT
1 GGCGTTTTTATATAAACGCCGCTAAATA-CTGTACTTTAGT
* * * * *
27212 GGCGTTTCTATACAAACTCCGCCAAAGACTCGTACTTTAGT
1 GGCGTTTTTATATAAACGCCGCTAAATACT-GTACTTTAGT
* * * *
27253 GGCATTTTTATACAAACGCCGCCAAAGACTCGTACTTTAGT
1 GGCGTTTTTATATAAACGCCGCTAAATACT-GTACTTTAGT
* * * *
27294 GGCGTTTTTATACT-AACGCTGCCCAAAGATCTGTACTTTAAT
1 GGCGTTTTTATA-TAAACGCCG-CTAAATA-CTGTACTTTAGT
27336 GGCGTTT
1 GGCGTTT
27343 CTACTGCTAA
Statistics
Matches: 374, Mismatches: 73, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
40 138 0.37
41 177 0.47
42 57 0.15
43 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (40 bp):
GGCGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGT
Found at i:27071 original size:122 final size:121
Alignment explanation
Indices: 26845--27342 Score: 446
Period size: 122 Copynumber: 4.1 Consensus size: 121
26835 CACTTTTAAC
* * * * * * *
26845 GGCGTTTTTTAAACAAACACCGGTAAATACTTGTTCTTTAGTGGCGTTTTTA-TATAAACGCCGC
1 GGCG-TTTTTATACAAACGCCGCTAAATACTCGTACTTTAGTGGC-ATTTTAGTACAAACGCCGC
* * * *
26909 TAAATACTGTGCTTTAATGGCGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGT
64 TAAATACTATACTTTAGTGGCGTTTCTATATAAACGCCGCTAAATACTGTACTTTAGT
* * * * * *
26967 GGTGTTTTTATATAAACGCCGCTAAATAAT-GTACTTTAGTGGCGTTCTAAGCACAAACGCCGCT
1 GGCGTTTTTATACAAACGCCGCTAAATACTCGTACTTTAGTGGCATT-TTAGTACAAACGCCGCT
* * * *
27031 AAATGCTCATACTTTAGTGGCATTTCTATATAAACGCCGCTAAATACTATTCTTTAGT
65 AAATACT-ATACTTTAGTGGCGTTTCTATATAAACGCCGCTAAATACTGTACTTTAGT
* * * * * * * ** *
27089 GGCGTTTTAAGCACAAGCGCCACTAAATTCTCGTACTTTAGTGGCATTTTTGTATAAATACAGCT
1 GGCGTTTTTA-TACAAACGCCGCTAAATACTCGTACTTTAGTGGCATTTTAGTACAAACGCCGCT
* * * *
27154 AAATACTATACTTTAGTTGCGTTTCTATAAAAACGCCGCTAAATACCCGTGCTTTAGT
65 AAATACTATACTTTAGTGGCGTTTCTATATAAACGCCGCTAAATA-CTGTACTTTAGT
* * * * *
27212 GGCGTTTCTATACAAACTCCGCCAAAGACTCGTACTTTAGTGGCATTTTTA-TACAAACGCCGCC
1 GGCGTTTTTATACAAACGCCGCTAAATACTCGTACTTTAGTGGCA-TTTTAGTACAAACGCCGCT
* * * * * * *
27276 AAAGACTCGTACTTTAGTGGCGTTTTTATACT-AACGCTGCCCAAAGATCTGTACTTTAAT
65 AAATACT-ATACTTTAGTGGCGTTTCTATA-TAAACGCCG-CTAAATA-CTGTACTTTAGT
27336 GGCGTTT
1 GGCGTTT
27343 CTACTGCTAA
Statistics
Matches: 297, Mismatches: 69, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
119 2 0.01
120 14 0.05
121 38 0.13
122 131 0.44
123 76 0.26
124 36 0.12
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (121 bp):
GGCGTTTTTATACAAACGCCGCTAAATACTCGTACTTTAGTGGCATTTTAGTACAAACGCCGCTA
AATACTATACTTTAGTGGCGTTTCTATATAAACGCCGCTAAATACTGTACTTTAGT
Found at i:31365 original size:42 final size:42
Alignment explanation
Indices: 31283--31534 Score: 278
Period size: 42 Copynumber: 5.9 Consensus size: 42
31273 ATGGTAATTA
* * *
31283 GCGGCGTTTGTATCAAAAAACGCCGCTATAGATCTGACCTTTT
1 GCGGTGTTTGT-TCCAAAAACACCGCTATAGATCTGACCTTTT
*
31326 GCGGTGTTTGTAT-CAAAAACACCGCTATTA-ATCTAACCTTTT
1 GCGGTGTTTGT-TCCAAAAACACCGCTA-TAGATCTGACCTTTT
* *
31368 GCGGTGTTTGTTCCAAAAACGCCGCTATAGATATGACCTTTT
1 GCGGTGTTTGTTCCAAAAACACCGCTATAGATCTGACCTTTT
* * *
31410 ACGGTGTTTGTTCCAAAAACACCGCTAAATG-TCTAACCTTTT
1 GCGGTGTTTGTTCCAAAAACACCGCTATA-GATCTGACCTTTT
* * * *
31452 GC-GTCGCTTGTTCCATAAACGCCGCTATAGATCTCGACATTTT
1 GCGGT-GTTTGTTCCAAAAACACCGCTATAGATCT-GACCTTTT
* *
31495 GCGGCGTTTGTTCCAAAAACACCGCCATAGATCTTGACCT
1 GCGGTGTTTGTTCCAAAAACACCGCTATAGATC-TGACCT
31535 ATAGCGGCGT
Statistics
Matches: 175, Mismatches: 25, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
41 6 0.03
42 116 0.66
43 51 0.29
44 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (42 bp):
GCGGTGTTTGTTCCAAAAACACCGCTATAGATCTGACCTTTT
Found at i:31389 original size:84 final size:83
Alignment explanation
Indices: 31283--31519 Score: 318
Period size: 84 Copynumber: 2.8 Consensus size: 83
31273 ATGGTAATTA
* *
31283 GCGGCGTTTGTATCAAAAAACGCCGCTATAGATCTGACCTTTTGCGGTGTTTGTAT-CAAAAACA
1 GCGGTGTTTGT-TCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGTGTTTGT-TCCAAAAACA
31347 CCGCTATTAA-TCTAACCTTTT
64 CCGCTA--AAGTCTAACCTTTT
* *
31368 GCGGTGTTTGTTCCAAAAACGCCGCTATAGATATGACCTTTTACGGTGTTTGTTCCAAAAACACC
1 GCGGTGTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGTGTTTGTTCCAAAAACACC
31433 GCTAAATGTCTAACCTTTT
66 GCTAAA-GTCTAACCTTTT
* * * *
31452 GC-GTCGCTTGTTCCATAAACGCCGCTATAGATCTCGACATTTTGCGGCGTTTGTTCCAAAAACA
1 GCGGT-GTTTGTTCCAAAAACGCCGCTATAGATCT-GACCTTTTGCGGTGTTTGTTCCAAAAACA
31516 CCGC
64 CCGC
31520 CATAGATCTT
Statistics
Matches: 137, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
82 2 0.01
83 3 0.02
84 92 0.67
85 40 0.29
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (83 bp):
GCGGTGTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGTGTTTGTTCCAAAAACACC
GCTAAAGTCTAACCTTTT
Found at i:45169 original size:20 final size:20
Alignment explanation
Indices: 45141--45195 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
45131 GGGGCTGTTT
*
45141 GTTTGGCTCTGAATGGAATC
1 GTTTAGCTCTGAATGGAATC
45161 GTTTAGCTCTGAATGGAATC
1 GTTTAGCTCTGAATGGAATC
*
45181 GTTTAGCGCTGAATG
1 GTTTAGCTCTGAATG
45196 CTAAACCGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.35
Consensus pattern (20 bp):
GTTTAGCTCTGAATGGAATC
Found at i:47079 original size:56 final size:56
Alignment explanation
Indices: 47014--47161 Score: 260
Period size: 56 Copynumber: 2.6 Consensus size: 56
47004 TCGGGTACAG
*
47014 TTGACATGACATAAGATCTATAACACTTATGTACGAATTAATTGAAGATTTTAATC
1 TTGACATGACATAAGATCTATAACACTTATGTACGAATTAATTGAAGACTTTAATC
*
47070 TTGACATGACATAAGATCTATAACACTTATGTACGAATTAATTTAAGACTTTAATC
1 TTGACATGACATAAGATCTATAACACTTATGTACGAATTAATTGAAGACTTTAATC
**
47126 TTGACATGACATAAGATCTATAATGCTTATGTACGA
1 TTGACATGACATAAGATCTATAACACTTATGTACGA
47162 TATATGATTA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 88 1.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (56 bp):
TTGACATGACATAAGATCTATAACACTTATGTACGAATTAATTGAAGACTTTAATC
Found at i:47700 original size:19 final size:19
Alignment explanation
Indices: 47676--47712 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
47666 ATGACCAACA
*
47676 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
47695 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
47713 CATTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:47803 original size:21 final size:20
Alignment explanation
Indices: 47777--47912 Score: 86
Period size: 20 Copynumber: 6.7 Consensus size: 20
47767 GAATATGTAA
*
47777 ATCGCAACGCGATAGCACGTG
1 ATCGCAACGCGATAACAC-TG
*
47798 ATCGCAACGCGAT-TCTGACT-
1 ATCGCAACGCGATAAC--ACTG
*
47818 ATCGCAACGCGATAATACATG
1 ATCGCAACGCGATAACAC-TG
*
47839 ATCGCAACGCGAT-TCTGACT-
1 ATCGCAACGCGATAAC--ACTG
* *
47859 ATCGCAACGAGAT-TCTGACT-
1 ATCGCAACGCGATAAC--ACTG
*
47879 ATCGCAACGCGATAATACGTG
1 ATCGCAACGCGATAACAC-TG
47900 ATCGCAACGCGAT
1 ATCGCAACGCGAT
47913 TCTGACTAAC
Statistics
Matches: 96, Mismatches: 9, Indels: 20
0.77 0.07 0.16
Matches are distributed among these distances:
19 4 0.04
20 47 0.49
21 41 0.43
22 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (20 bp):
ATCGCAACGCGATAACACTG
Found at i:47822 original size:41 final size:41
Alignment explanation
Indices: 47777--47867 Score: 155
Period size: 41 Copynumber: 2.2 Consensus size: 41
47767 GAATATGTAA
* *
47777 ATCGCAACGCGATAGCACGTGATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAACACATGATCGCAACGCGATTCTGACT
*
47818 ATCGCAACGCGATAATACATGATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAACACATGATCGCAACGCGATTCTGACT
47859 ATCGCAACG
1 ATCGCAACG
47868 AGATTCTGAC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGATAACACATGATCGCAACGCGATTCTGACT
Found at i:47822 original size:61 final size:58
Alignment explanation
Indices: 47738--47912 Score: 167
Period size: 61 Copynumber: 2.9 Consensus size: 58
47728 GTTTCCAGAT
* * *
47738 TCGCAACGCGATTTTGACCATCGCAATGCGAATATGTAAATCGCAACGCGATAGC-ACGTGA
1 TCGCAACGCGATTCTGACTATCGCAACGCGAATA-GTAAATCGCAACGCGAT-GCGAC-T-A
* *
47799 TCGCAACGCGATTCTGACTATCGCAACGCG-ATAATACATGATCGCAACGCGATTCTGACTA
1 TCGCAACGCGATTCTGACTATCGCAACGCGAATAGTA-A--ATCGCAACGCGATGC-GACTA
* *
47860 TCGCAACGAGATTCTGACTATCGCAACGCGATAATACGT-GATCGCAACGCGAT
1 TCGCAACGCGATTCTGACTATCGCAACGCG--AATA-GTAAATCGCAACGCGAT
47913 TCTGACTAAC
Statistics
Matches: 97, Mismatches: 8, Indels: 18
0.79 0.07 0.15
Matches are distributed among these distances:
59 2 0.02
60 4 0.04
61 71 0.73
62 14 0.14
63 2 0.02
64 3 0.03
65 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (58 bp):
TCGCAACGCGATTCTGACTATCGCAACGCGAATAGTAAATCGCAACGCGATGCGACTA
Found at i:47823 original size:20 final size:20
Alignment explanation
Indices: 47798--47925 Score: 152
Period size: 20 Copynumber: 6.3 Consensus size: 20
47788 ATAGCACGTG
47798 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
**
47818 ATCGCAACGCGATAAT-ACAT
1 ATCGCAACGCGATTCTGAC-T
47838 GATCGCAACGCGATTCTGACT
1 -ATCGCAACGCGATTCTGACT
*
47859 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
**
47879 ATCGCAACGCGATAAT-ACGT
1 ATCGCAACGCGATTCTGAC-T
47899 GATCGCAACGCGATTCTGACT
1 -ATCGCAACGCGATTCTGACT
*
47920 AACGCA
1 ATCGCA
47926 TCACTGAATT
Statistics
Matches: 91, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
19 4 0.04
20 53 0.58
21 30 0.33
22 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:47913 original size:61 final size:61
Alignment explanation
Indices: 47798--47925 Score: 229
Period size: 61 Copynumber: 2.1 Consensus size: 61
47788 ATAGCACGTG
*
47798 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATGATCGCAACGCGATTCTGACT
1 ATCGCAACGAGATTCTGACTATCGCAACGCGATAATACATGATCGCAACGCGATTCTGACT
*
47859 ATCGCAACGAGATTCTGACTATCGCAACGCGATAATACGTGATCGCAACGCGATTCTGACT
1 ATCGCAACGAGATTCTGACTATCGCAACGCGATAATACATGATCGCAACGCGATTCTGACT
*
47920 AACGCA
1 ATCGCA
47926 TCACTGAATT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (61 bp):
ATCGCAACGAGATTCTGACTATCGCAACGCGATAATACATGATCGCAACGCGATTCTGACT
Found at i:47948 original size:102 final size:103
Alignment explanation
Indices: 47736--47925 Score: 249
Period size: 102 Copynumber: 1.9 Consensus size: 103
47726 CAGTTTCCAG
* * * *
47736 ATTCGCAACGCGATTTTGACCATCGCAATGCGAATATGTAAATCGCAACGCGATAGCACGTGATC
1 ATTCGCAACGCGATTCTGACCATCGCAACGAGAATATGTAAATCGCAACGCGATAACACGTGATC
* * *
47801 GCAACGCGATTCTGACTATCGCAACGCGATAATACATG
66 GCAACGCGATTCTGACTAACGCAACACGATAATACATA
* * * * *
47839 A-TCGCAACGCGATTCTGACTATCGCAACGAGATTCTG-ACTATCGCAACGCGATAATACGTGAT
1 ATTCGCAACGCGATTCTGACCATCGCAACGAGAATATGTA-AATCGCAACGCGATAACACGTGAT
47902 CGCAACGCGATTCTGACTAACGCA
65 CGCAACGCGATTCTGACTAACGCA
47926 TCACTGAATT
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
101 1 0.01
102 74 0.97
103 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (103 bp):
ATTCGCAACGCGATTCTGACCATCGCAACGAGAATATGTAAATCGCAACGCGATAACACGTGATC
GCAACGCGATTCTGACTAACGCAACACGATAATACATA
Found at i:48797 original size:24 final size:24
Alignment explanation
Indices: 48746--48799 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
48736 GTATTCGAAA
*
48746 TTTGATCTTGGTCAATACCCGGGC
1 TTTGATCTTGGTCAATACCCGGAC
* *
48770 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
48794 TTTGAT
1 TTTGAT
48800 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:52105 original size:20 final size:20
Alignment explanation
Indices: 52068--52106 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
52058 AGATTGAGTG
* *
52068 GATTTTAATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
52088 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
52107 AGTTTAGGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:52293 original size:21 final size:21
Alignment explanation
Indices: 52267--52306 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
52257 CAGAACCCCA
*
52267 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
52288 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
52307 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:56244 original size:20 final size:21
Alignment explanation
Indices: 56177--56233 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
56167 GAGTTTGTTT
56177 TCATTTTTAAATTTTGAAACA
1 TCATTTTTAAATTTTGAAACA
56198 TCATTTTTAAATTTTGAAACA
1 TCATTTTTAAATTTTGAAACA
*
56219 TCATTTTTATATTTT
1 TCATTTTTAAATTTT
56234 AAAAATAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.54
Consensus pattern (21 bp):
TCATTTTTAAATTTTGAAACA
Found at i:58703 original size:14 final size:14
Alignment explanation
Indices: 58674--58710 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
58664 AGAAAAAGAA
58674 GAAGAATAAATCCCC
1 GAAGAA-AAATCCCC
*
58689 GAAGAAAAGTCCCC
1 GAAGAAAAATCCCC
58703 GAAGAAAA
1 GAAGAAAA
58711 TGCCACGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.22, G:0.19, T:0.08
Consensus pattern (14 bp):
GAAGAAAAATCCCC
Found at i:60770 original size:18 final size:18
Alignment explanation
Indices: 60747--60781 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
60737 AGCAAAAGGC
*
60747 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
60765 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
60782 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:61066 original size:34 final size:34
Alignment explanation
Indices: 61023--61100 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
61013 TGAATTTGAA
*
61023 TATCACAACGGGATAATCGCAATGCAAAAATGAC
1 TATCGCAACGGGATAATCGCAATGCAAAAATGAC
*
61057 TATCGCAACGGGATAATCGCAATGCGAAAATGAC
1 TATCGCAACGGGATAATCGCAATGCAAAAATGAC
61091 TATCGCAACG
1 TATCGCAACG
61101 CGAAAATGAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.18
Consensus pattern (34 bp):
TATCGCAACGGGATAATCGCAATGCAAAAATGAC
Found at i:61245 original size:73 final size:74
Alignment explanation
Indices: 60964--61256 Score: 258
Period size: 74 Copynumber: 4.0 Consensus size: 74
60954 TCATTTGACT
* * * * * * *
60964 ATCACAGCGCGAATATGACTATCGCAACACGAATATGACTATCGCAACGTGAATTTGAATATCAC
1 ATCACAACGCGAATATGACTATCGCAACGCGAATTTAACTATCGCAACGCGAATTTGACTATCGC
*
61029 AACGGGATA
66 AACGAGATA
* * * * * * **
61038 ATCGCAATGCAAAAATGACTATCGCAACG-GGA--T-A--ATCGCAATGCGAAAATGACTATCGC
1 ATCACAACGCGAATATGACTATCGCAACGCGAATTTAACTATCGCAACGCGAATTTGACTATCGC
*
61097 AACGCGAAAATGA
66 AA--CG-AGAT-A
* *
61110 CTATCGCAACGTGAATATGACTATCGCAACGCGAATTTAACTATCGCAACGCGAATTTGACTATC
1 --ATCACAACGCGAATATGACTATCGCAACGCGAATTTAACTATCGCAACGCGAATTTGACTATC
*
61175 GTAACGAGATA
64 GCAACGAGATA
* * * * *
61186 ATCACAACGCGAA-ATGACTATTGCAACGCGAATTTGATTATCGCAACGGGAATTTGACTATTGC
1 ATCACAACGCGAATATGACTATCGCAACGCGAATTTAACTATCGCAACGCGAATTTGACTATCGC
61250 AACGAGA
66 AACGAGA
61257 AAATTGTAAA
Statistics
Matches: 174, Mismatches: 33, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
68 21 0.12
70 3 0.02
71 3 0.02
72 1 0.01
73 54 0.31
74 59 0.34
75 2 0.01
76 1 0.01
77 4 0.02
78 3 0.02
80 23 0.13
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (74 bp):
ATCACAACGCGAATATGACTATCGCAACGCGAATTTAACTATCGCAACGCGAATTTGACTATCGC
AACGAGATA
Found at i:61251 original size:20 final size:20
Alignment explanation
Indices: 60956--61253 Score: 193
Period size: 20 Copynumber: 15.8 Consensus size: 20
60946 TTACACATTC
* *
60956 ATTTGACTATCACAGCGCGA
1 ATTTGACTATCGCAACGCGA
* *
60976 ATATGACTATCGCAACACGA
1 ATTTGACTATCGCAACGCGA
* *
60996 ATATGACTATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
* * *
61016 ATTTGAATATCACAACG-GG
1 ATTTGACTATCGCAACGCGA
* *
61035 A--T-A--ATCGCAATGCAA
1 ATTTGACTATCGCAACGCGA
** *
61050 AAATGACTATCGCAACG-GG
1 ATTTGACTATCGCAACGCGA
*
61069 A--T-A--ATCGCAATGCGA
1 ATTTGACTATCGCAACGCGA
**
61084 AAATGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
** *
61104 AAATGACTATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
*
61124 ATATGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
61144 ATTTAACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
61164 ATTTGACTATCGTAACGAG-
1 ATTTGACTATCGCAACGCGA
*
61183 A--T-A--ATCACAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
61198 A-ATGACTATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
61217 ATTTGATTATCGCAACGGGA
1 ATTTGACTATCGCAACGCGA
*
61237 ATTTGACTATTGCAACG
1 ATTTGACTATCGCAACG
61254 AGAAAATTGT
Statistics
Matches: 221, Mismatches: 39, Indels: 36
0.75 0.13 0.12
Matches are distributed among these distances:
14 23 0.10
15 4 0.02
16 4 0.02
17 6 0.03
18 2 0.01
19 15 0.07
20 167 0.76
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:61287 original size:93 final size:93
Alignment explanation
Indices: 61088--61296 Score: 219
Period size: 93 Copynumber: 2.2 Consensus size: 93
61078 ATGCGAAAAT
*
61088 GACTATCGCAACGCGAAAATGACTATCGCAACGTGAATATGACTATCGCAACGCGAATTTAACTA
1 GACTATCGCAACGCG-AAATGACTATCGCAACGCGAATATGACTATCGCAACGCGAATTTAACTA
* * *
61153 TCGCAACGCGAATTTGACTATCGTAACGA
65 TCGCAACGAGAAATTGACAATCGTAACGA
* * * * * *
61182 GA-TAATCACAACGCGAAATGACTATTGCAACGCGAATTTGATTATCGCAACGGGAATTTGACTA
1 GACT-ATCGCAACGCGAAATGACTATCGCAACGCGAATATGACTATCGCAACGCGAATTTAACTA
* **
61246 TTGCAACGAGAAAATTGTA-AAGT-GT-ATTA
65 TCGCAACGAG-AAATTG-ACAA-TCGTAACGA
61275 GACTATCGCAACGCGAATATGA
1 GACTATCGCAACGCGAA-ATGA
61297 TGCAGATTGA
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
93 68 0.72
94 25 0.26
95 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (93 bp):
GACTATCGCAACGCGAAATGACTATCGCAACGCGAATATGACTATCGCAACGCGAATTTAACTAT
CGCAACGAGAAATTGACAATCGTAACGA
Found at i:61437 original size:30 final size:30
Alignment explanation
Indices: 61403--61498 Score: 192
Period size: 30 Copynumber: 3.2 Consensus size: 30
61393 TTAAACAAGC
61403 ACAAATAAGAATTATTTACACATCAATTAA
1 ACAAATAAGAATTATTTACACATCAATTAA
61433 ACAAATAAGAATTATTTACACATCAATTAA
1 ACAAATAAGAATTATTTACACATCAATTAA
61463 ACAAATAAGAATTATTTACACATCAATTAA
1 ACAAATAAGAATTATTTACACATCAATTAA
61493 ACAAAT
1 ACAAAT
61499 CAACTCTTAT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.29
Consensus pattern (30 bp):
ACAAATAAGAATTATTTACACATCAATTAA
Found at i:62908 original size:21 final size:21
Alignment explanation
Indices: 62879--62986 Score: 92
Period size: 21 Copynumber: 5.1 Consensus size: 21
62869 GAATGTTGGG
* *
62879 AGGGACCTCTTCAACGATGAC
1 AGGGGCCTCTTGAACGATGAC
* * *
62900 AGGTGCCTCTTGAACGGTGAG
1 AGGGGCCTCTTGAACGATGAC
* ** *
62921 AGGGGACTCTTGAGGGATGAT
1 AGGGGCCTCTTGAACGATGAC
*
62942 AGGGGCCTCTTGAACGAT-AGG
1 AGGGGCCTCTTGAACGATGA-C
* *
62963 AGAGGCCTCTTAAACGATGAC
1 AGGGGCCTCTTGAACGATGAC
62984 AGG
1 AGG
62987 TGAGCCGGGC
Statistics
Matches: 66, Mismatches: 19, Indels: 4
0.74 0.21 0.04
Matches are distributed among these distances:
20 1 0.02
21 64 0.97
22 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.34, T:0.20
Consensus pattern (21 bp):
AGGGGCCTCTTGAACGATGAC
Found at i:62982 original size:42 final size:42
Alignment explanation
Indices: 62884--62986 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 42
62874 TTGGGAGGGA
* * * *
62884 CCTCTTCAACGATGACAGGTGCCTCTTGAACGGTGAGAGGGG
1 CCTCTTAAACGATGACAGGGGCCTCTTGAACGATGAGAGAGG
* * ** *
62926 ACTCTTGAGGGATGATAGGGGCCTCTTGAACGAT-AGGAGAGG
1 CCTCTTAAACGATGACAGGGGCCTCTTGAACGATGA-GAGAGG
62968 CCTCTTAAACGATGACAGG
1 CCTCTTAAACGATGACAGG
62987 TGAGCCGGGC
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
41 1 0.02
42 46 0.98
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.21
Consensus pattern (42 bp):
CCTCTTAAACGATGACAGGGGCCTCTTGAACGATGAGAGAGG
Found at i:63488 original size:20 final size:20
Alignment explanation
Indices: 63463--63506 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
63453 AATAGTTTCT
*
63463 GAAACTTAAAATTGCAACAC
1 GAAACTTAAAATCGCAACAC
63483 GAAACTTAAAATCGCAACAC
1 GAAACTTAAAATCGCAACAC
63503 GAAA
1 GAAA
63507 ATGATTATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.52, C:0.20, G:0.11, T:0.16
Consensus pattern (20 bp):
GAAACTTAAAATCGCAACAC
Found at i:63535 original size:20 final size:20
Alignment explanation
Indices: 63493--63561 Score: 93
Period size: 20 Copynumber: 3.5 Consensus size: 20
63483 GAAACTTAAA
* ** *
63493 ATCGCAACACGAAAATGATT
1 ATCGCAACGCGAATTTGACT
63513 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAATTTGACT
*
63533 ATCGTAACGCGAATTTGACT
1 ATCGCAACGCGAATTTGACT
63553 ATCGCAACG
1 ATCGCAACG
63562 AGATAATCGC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGAATTTGACT
Found at i:63588 original size:33 final size:33
Alignment explanation
Indices: 63533--63613 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
63523 GAATTTGACT
* * * *
63533 ATCGTAACGCGAATTTGACTATCGCAACGAGATA
1 ATCGCAACGCGAA-ATGACTATCACAACGAGAAA
63567 ATCGCAACGCGAAATGACTATCACAACGAGAAA
1 ATCGCAACGCGAAATGACTATCACAACGAGAAA
*
63600 ATCACAACGCGAAA
1 ATCGCAACGCGAAA
63614 CCAAAATCGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 30 0.71
34 12 0.29
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (33 bp):
ATCGCAACGCGAAATGACTATCACAACGAGAAA
Found at i:63627 original size:33 final size:33
Alignment explanation
Indices: 63553--63632 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
63543 GAATTTGACT
* * ** **
63553 ATCGCAACGAGATAATCGCAACGCGAAATGACT
1 ATCGCAACGAGAAAATCACAACGCGAAACCAAA
*
63586 ATCACAACGAGAAAATCACAACGCGAAACCAAA
1 ATCGCAACGAGAAAATCACAACGCGAAACCAAA
*
63619 ATCGCAACGCGAAA
1 ATCGCAACGAGAAA
63633 CTAAATTCGC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.46, C:0.26, G:0.17, T:0.10
Consensus pattern (33 bp):
ATCGCAACGAGAAAATCACAACGCGAAACCAAA
Found at i:63649 original size:19 final size:19
Alignment explanation
Indices: 63597--63643 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
63587 TCACAACGAG
*
63597 AAAATCACAACGCGAAACC
1 AAAATCGCAACGCGAAACC
*
63616 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACC
*
63635 AAATTCGCA
1 AAAATCGCA
63644 TTGCGATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.49, C:0.28, G:0.13, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACC
Found at i:63663 original size:20 final size:20
Alignment explanation
Indices: 63638--63809 Score: 89
Period size: 20 Copynumber: 9.2 Consensus size: 20
63628 CGAAACTAAA
63638 TTCGCATTGCGATAGTCATT
1 TTCGCATTGCGATAGTCATT
63658 TTCGCATTGCGAT--T-A-T
1 TTCGCATTGCGATAGTCATT
* * **
63674 CTCG--TTACGATAGTCAAA
1 TTCGCATTGCGATAGTCATT
*
63692 TTCGCGTTGCGATAGTCATT
1 TTCGCATTGCGATAGTCATT
* * * *
63712 TCCGCGTTGTGATAGTCGTT
1 TTCGCATTGCGATAGTCATT
*
63732 TCCGCATTGCGAT--T-A--
1 TTCGCATTGCGATAGTCATT
* **
63747 -TCCCATTGCGATAGTCAAA
1 TTCGCATTGCGATAGTCATT
* * **
63766 TTCGCGTTACGATAGTCAAA
1 TTCGCATTGCGATAGTCATT
* *
63786 TTCGCGTTGCGATAATCATT
1 TTCGCATTGCGATAGTCATT
63806 TTCG
1 TTCG
63810 TGTTGCGACT
Statistics
Matches: 118, Mismatches: 22, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
14 16 0.14
16 6 0.05
17 3 0.03
18 5 0.04
20 88 0.75
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (20 bp):
TTCGCATTGCGATAGTCATT
Found at i:63817 original size:74 final size:74
Alignment explanation
Indices: 63635--63809 Score: 244
Period size: 74 Copynumber: 2.4 Consensus size: 74
63625 ACGCGAAACT
* * *
63635 AAATTCGCATTGCGATAGTCATTTTCGCATTGCGATTATCTCGTTACGATAGTCAAATTCGCGTT
1 AAATTCGCGTTGCGATAGTCATTTTCGCATTGCGATTATCCCATTACGATAGTCAAATTCGCGTT
*
63700 GCGATAGTC
66 ACGATAGTC
* * * * *
63709 -ATTTCCGCGTTGTGATAGTCGTTTCCGCATTGCGATTATCCCATTGCGATAGTCAAATTCGCGT
1 AAATT-CGCGTTGCGATAGTCATTTTCGCATTGCGATTATCCCATTACGATAGTCAAATTCGCGT
63773 TACGATAGTC
65 TACGATAGTC
*
63783 AAATTCGCGTTGCGATAATCATTTTCG
1 AAATTCGCGTTGCGATAGTCATTTTCG
63810 TGTTGCGACT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
73 3 0.04
74 79 0.93
75 3 0.04
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (74 bp):
AAATTCGCGTTGCGATAGTCATTTTCGCATTGCGATTATCCCATTACGATAGTCAAATTCGCGTT
ACGATAGTC
Found at i:66254 original size:22 final size:22
Alignment explanation
Indices: 66227--66306 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
66217 GATGGAGATA
66227 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
* * *
66249 GACGGATTTCGCCGGAAATAGG
1 GACGGATTTCGTCGGAGATGGG
* * *
66271 GATGGATTTTGTCAGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
66293 GACGG-TTGTCGTCG
1 GACGGATT-TCGTCG
66307 TAGAGAATGA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
21 2 0.04
22 43 0.96
ACGTcount: A:0.20, C:0.14, G:0.41, T:0.25
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:66494 original size:20 final size:20
Alignment explanation
Indices: 66469--66574 Score: 124
Period size: 20 Copynumber: 5.2 Consensus size: 20
66459 TTATCGCAAC
*
66469 GCGATAGTCAGAATCTCGTT
1 GCGATAGTCAGAATCGCGTT
66489 GCGATAGTCAGAATCGCGTT
1 GCGATAGTCAGAATCGCGTT
** * *
66509 GCGATCACGT-ATTATTGCATT
1 GCGAT-A-GTCAGAATCGCGTT
* *
66530 GCGATAGTCCGAATCGCTTT
1 GCGATAGTCAGAATCGCGTT
66550 GCGATAGTCAGAATCGCGTT
1 GCGATAGTCAGAATCGCGTT
66570 GCGAT
1 GCGAT
66575 CACGTGTTAT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
19 2 0.03
20 54 0.76
21 13 0.18
22 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (20 bp):
GCGATAGTCAGAATCGCGTT
Found at i:66534 original size:61 final size:61
Alignment explanation
Indices: 66469--66584 Score: 196
Period size: 61 Copynumber: 1.9 Consensus size: 61
66459 TTATCGCAAC
*
66469 GCGATAGTCAGAATCTCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTATTATTGCATT
1 GCGATAGTCAGAATCGCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTATTATTGCATT
* * *
66530 GCGATAGTCCGAATCGCTTTGCGATAGTCAGAATCGCGTTGCGATCACGTGTTAT
1 GCGATAGTCAGAATCGCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTATTAT
66585 CACGTTGTGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (61 bp):
GCGATAGTCAGAATCGCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTATTATTGCATT
Found at i:66620 original size:19 final size:19
Alignment explanation
Indices: 66596--66636 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
66586 ACGTTGTGAT
66596 TTACATATTCACATTGCGA
1 TTACATATTCACATTGCGA
*
66615 TTACATATTCGCATTGCGA
1 TTACATATTCACATTGCGA
66634 TTA
1 TTA
66637 TCTAAAATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (19 bp):
TTACATATTCACATTGCGA
Found at i:66745 original size:19 final size:19
Alignment explanation
Indices: 66707--66757 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
66697 TCTGGAAACT
* *
66707 GAATTGCGATAATGGAGATC
1 GAATTGCGAT-TTAGAGATC
**
66727 GCGTTGCGATTTAGAGATC
1 GAATTGCGATTTAGAGATC
66746 GAATTGCGATTT
1 GAATTGCGATTT
66758 TGTTGGTCAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (19 bp):
GAATTGCGATTTAGAGATC
Found at i:68207 original size:18 final size:18
Alignment explanation
Indices: 68184--68239 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
68174 CGAGAGTTAT
68184 AAGTGGTCCTTCGGGACA
1 AAGTGGTCCTTCGGGACA
*
68202 AAGTGGTCATTCGGGACA
1 AAGTGGTCCTTCGGGACA
** *
68220 AAGTTATCCTTCTGGACA
1 AAGTGGTCCTTCGGGACA
68238 AA
1 AA
68240 TTTTAAATGC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (18 bp):
AAGTGGTCCTTCGGGACA
Found at i:70204 original size:20 final size:20
Alignment explanation
Indices: 70150--70206 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
70140 AACTTAATAT
* *
70150 TATTATTTTTAAAATATTAAA
1 TATTATTTTT-ATATTTTAAA
*
70171 -ATAATTTATT-TATTTTAAA
1 TATTATTT-TTATATTTTAAA
70190 TATTATTTTTATATTTT
1 TATTATTTTTATATTTT
70207 TATTAATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
19 9 0.31
20 18 0.62
21 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTATTTTTATATTTTAAA
Found at i:70399 original size:19 final size:18
Alignment explanation
Indices: 70332--70399 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 18
70322 TTAAATATCT
70332 TTATTAA-AATATTATTAGA
1 TTATTAATAATATTATT--A
*
70351 TTATTATATTAATATTAATA
1 TTATTA-A-TAATATTATTA
*
70371 -TATAAATAATATTATTCA
1 TTATTAATAATATTATT-A
70389 TTATTAATAAT
1 TTATTAATAAT
70400 TAATAATATT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
17 9 0.22
18 2 0.05
19 19 0.47
20 2 0.05
22 8 0.20
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (18 bp):
TTATTAATAATATTATTA
Found at i:70410 original size:19 final size:20
Alignment explanation
Indices: 70334--70412 Score: 54
Period size: 22 Copynumber: 3.8 Consensus size: 20
70324 AAATATCTTT
*
70334 ATTAA-AATATTATTAGATT
1 ATTAATAATATTATTAGATA
* *
70353 ATTATATTAATATTAATATATA
1 ATTA-A-TAATATTATTAGATA
*
70375 AATAATATTATTCATTATTA-ATA
1 ATTAATA--A-T-ATTATTAGATA
70398 ATTAATAATATTATT
1 ATTAATAATATTATT
70413 TCTATGAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
19 10 0.21
20 4 0.09
21 2 0.04
22 15 0.32
23 10 0.21
24 6 0.13
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (20 bp):
ATTAATAATATTATTAGATA
Found at i:70479 original size:31 final size:31
Alignment explanation
Indices: 70444--70534 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 31
70434 TAAATTTTAT
70444 TAATAATTTATTATATTATTAAAATA-AA-A
1 TAATAATTTATTATATTATTAAAATATAATA
* * *
70473 T-ATAATATCTTATATTATTATAATATAAT-
1 TAATAATTTATTATATTATTAAAATATAATA
* * *
70502 TGATATTTTATTATAATATTTAAAATATAATA
1 TAATAATTTATTATATTA-TTAAAATATAATA
70534 T
1 T
70535 TATATTATTA
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
28 21 0.43
29 4 0.08
30 12 0.24
31 11 0.22
32 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (31 bp):
TAATAATTTATTATATTATTAAAATATAATA
Found at i:70529 original size:22 final size:22
Alignment explanation
Indices: 70504--70553 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
70494 AATATAATTG
*
70504 ATATTTTATTATAATATTTA-AA
1 ATATTATATTATAATA-TTAGAA
* *
70526 ATATAATATTATATTATTAGAA
1 ATATTATATTATAATATTAGAA
70548 ATATTA
1 ATATTA
70554 ATAAAAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
ATATTATATTATAATATTAGAA
Found at i:71106 original size:42 final size:40
Alignment explanation
Indices: 71037--71116 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 40
71027 GATAAATCTG
* *
71037 AATTAATTTTATTTTTAATTATTTTTTGAGCTTTTATTTT
1 AATTAAATTTATTTTTAATTAATTTTTGAGCTTTTATTTT
* *
71077 AATTAAATTTATGCTTTTATTTAATTTTTGAGTTTTTATT
1 AATTAAATTTAT--TTTTAATTAATTTTTGAGCTTTTATT
71117 AATTGCCCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 11 0.32
42 23 0.68
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (40 bp):
AATTAAATTTATTTTTAATTAATTTTTGAGCTTTTATTTT
Found at i:71119 original size:40 final size:40
Alignment explanation
Indices: 71037--71120 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
71027 GATAAATCTG
* * *
71037 AATTAATTTTATTTTTAATTATTTTTTGAGCTTTTATTTT
1 AATTAAATTTATTTTTAATTAATTTTTGAGCTTTTATATT
*
71077 AATTAAATTTATGCTTTTATTTAATTTTTGAG-TTTT-TATT
1 AATTAAATTTAT--TTTTAATTAATTTTTGAGCTTTTATATT
71117 AATT
1 AATT
71121 GCCCATCCCG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
40 18 0.47
41 4 0.11
42 16 0.42
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.64
Consensus pattern (40 bp):
AATTAAATTTATTTTTAATTAATTTTTGAGCTTTTATATT
Found at i:71166 original size:15 final size:15
Alignment explanation
Indices: 71146--71178 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
71136 TAACCCCTAA
71146 TCTTAGTTAT-GGTTT
1 TCTTAG-TATGGGTTT
71161 TCTTAGTATGGGTTT
1 TCTTAGTATGGGTTT
71176 TCT
1 TCT
71179 CAAGGCTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.12, C:0.09, G:0.21, T:0.58
Consensus pattern (15 bp):
TCTTAGTATGGGTTT
Found at i:74970 original size:14 final size:14
Alignment explanation
Indices: 74951--74982 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
74941 TCCATTAATT
*
74951 AATTAATTATTATA
1 AATTAAATATTATA
74965 AATTAAATATTATA
1 AATTAAATATTATA
74979 AATT
1 AATT
74983 TTATTACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATTAAATATTATA
Found at i:78831 original size:2 final size:2
Alignment explanation
Indices: 78824--78865 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
78814 TATACCCATA
78824 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78866 TTACAGGACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79287 original size:55 final size:55
Alignment explanation
Indices: 79201--79608 Score: 538
Period size: 55 Copynumber: 7.4 Consensus size: 55
79191 AACGGGTTTA
* * * *
79201 CTCCTTATTTCTTTCAG-GTAGTAT-AGAACTCGAATAATCTTCAATAATCGTGTTTG
1 CTCCCTATTTC-TTCAGAG-AGTATGAG-ACTCGAACAATCTTCAACAATCGTGTCTG
* *
79257 CTCTCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTATG
1 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
79312 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
1 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
* *
79367 CTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATTGTGTCTG
1 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
* * *
79422 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAATAATTGTGTTTG
1 CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
* * * *
79477 CTCCCTA-TTCTTTCAGAGAGTATGAGACTCAAACAATCTTCAATAATTGTGTCTA
1 CTCCCTATTTC-TTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
* * * * *
79532 CTCCTTA-TTCTTTCATAGAGTATAAGACTCGAACAATCTTCAACAACCGTGTCCG
1 CTCCCTATTTC-TTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
* *
79587 TTCCCTA-TTCTTCAGGGAGTAT
1 CTCCCTATTTCTTCAGAGAGTAT
79609 AGAACTCAAA
Statistics
Matches: 321, Mismatches: 28, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
54 13 0.04
55 296 0.92
56 12 0.04
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (55 bp):
CTCCCTATTTCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGTGTCTG
Found at i:79652 original size:54 final size:54
Alignment explanation
Indices: 79594--80279 Score: 1013
Period size: 54 Copynumber: 12.6 Consensus size: 54
79584 CCGTTCCCTA
* * * *
79594 TTCTTCAGGGAGTATAGAACTCAAAAATCGTCTTCTTACGGGTTCACTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
*
79648 TTCTTCAGGAAGTATAGAACTCAAAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTC-GAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
79703 TTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCATACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
79757 TTCTTCAAGG-AGTATAGAACTCAAAAACCTTCTTCTTACGGGTTCGCTCCCTCT
1 TTCTTC-AGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
*
79811 TTCTTCAGGAAGTATAGAACTCAAAAGATCTTCTTCTTACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAA-ATCTTCTTCTTACGGGTTCGCTCCCTCT
*
79866 TTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTACGGGTTCGCTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTAC-GG---G-TTCGCTCCCTCT
* * **
79925 TTCTTCAGGAAGTATAAAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* *
79979 TTCTTCAGGAAGTATAGAACTCAAAAATCTTCTTCTTACAGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
* * * *
80033 TTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTATGGGTTCGGTACCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
80087 TTCTTCAGGAAGTATAGAACTC-AAAAGTCTTCTTCTTACGGGTTCGCTCCCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAA-TCTTCTTCTTACGGGTTCGCTCCCTCT
* *
80141 TTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTACGGGTTCGCTACCTCT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
** *
80195 TTCTTCAGGAAGTATAGAACTCGAAAA---TCTTCAAACGGGTTCGCTCCCTAT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
*
80246 TTCTTCAGGGAGTATAGAACTCGAAAATCTTCTT
1 TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTT
80280 TTTCTTCACT
Statistics
Matches: 576, Mismatches: 42, Indels: 28
0.89 0.07 0.04
Matches are distributed among these distances:
51 46 0.08
53 6 0.01
54 363 0.63
55 112 0.19
58 3 0.01
59 46 0.08
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (54 bp):
TTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTCCCTCT
Found at i:80053 original size:330 final size:330
Alignment explanation
Indices: 79594--80226 Score: 1063
Period size: 330 Copynumber: 1.9 Consensus size: 330
79584 CCGTTCCCTA
* * **
79594 TTCTTCAGGGAGTATAGAACTCAAAAATCGTCTTCTTACGGGTTCACTCCCTCTTTCTTCAGGAA
1 TTCTTCAGGAAGTATAAAACTCAAAAATCGTCTTCAAACGGGTTCACTCCCTCTTTCTTCAGGAA
*
79659 GTATAGAACTCAAAAAATCTTCTTCTTACGGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACT
66 GTATAGAACTCAAAAAATCTTCTTCTTACAGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACT
*
79724 CGAGAATCTTCTTCATACGGGTTCGCTCCCTCTTTCTTCAAGG-AGTATAGAACTCAAAAACCTT
131 CGAGAATCTTCTTCATACGGGTTCGCTACCTCTTTCTTC-AGGAAGTATAGAACTCAAAAACCTT
79788 CTTCTTACGGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCAAAAGATCTTCTTCTTACGG
195 CTTCTTACGGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCAAAA-ATCTTCTTCTTACGG
* *
79853 GTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTACGGGTTCGCTTCGC
259 GTTCGCTACCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTTCGC
79918 TCCCTCT
324 TCCCTCT
* * * *
79925 TTCTTCAGGAAGTATAAAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTTCAGGAA
1 TTCTTCAGGAAGTATAAAACTCAAAAATCGTCTTCAAACGGGTTCACTCCCTCTTTCTTCAGGAA
79990 GTATAGAACTC-AAAAATCTTCTTCTTACAGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACT
66 GTATAGAACTCAAAAAATCTTCTTCTTACAGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACT
* * * **
80054 CGAGAATCTTCTTCTTATGGGTTCGGTACCTCTTTCTTCAGGAAGTATAGAACTCAAAAGTCTTC
131 CGAGAATCTTCTTCATACGGGTTCGCTACCTCTTTCTTCAGGAAGTATAGAACTCAAAAACCTTC
* *
80119 TTCTTACGGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCGAGAATCTTCTTCTTACGGGT
196 TTCTTACGGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCAAAAATCTTCTTCTTACGGGT
80184 TCGCTACCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTC
261 TCGCTACCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTC
80227 AAACGGGTTC
Statistics
Matches: 282, Mismatches: 19, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
329 61 0.22
330 153 0.54
331 68 0.24
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (330 bp):
TTCTTCAGGAAGTATAAAACTCAAAAATCGTCTTCAAACGGGTTCACTCCCTCTTTCTTCAGGAA
GTATAGAACTCAAAAAATCTTCTTCTTACAGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACT
CGAGAATCTTCTTCATACGGGTTCGCTACCTCTTTCTTCAGGAAGTATAGAACTCAAAAACCTTC
TTCTTACGGGTTCGCTCCCTCTTTCTTCAGGAAGTATAGAACTCAAAAATCTTCTTCTTACGGGT
TCGCTACCTCTTTCTTCAGGAAGTATAGAACTCGAAAATCTTCTTCTTACGGGTTCGCTTCGCTC
CCTCT
Found at i:82282 original size:124 final size:125
Alignment explanation
Indices: 82052--82283 Score: 342
Period size: 124 Copynumber: 1.9 Consensus size: 125
82042 CGCAACATCA
* * * * *
82052 TCTTATACTTGTACGGGCCTTCAAAATGCCCCAACATCTCAGATTGTAAGGCTTACTCTTAATGC
1 TCTTATACTAGTACGGGCCTTCAAAATGCCCCAACACCTCAAATTGTAAGGCTCACTCTTAATAC
*
82117 CTTCTTGGTCTAAATCTTGTCCTCTCAATATGATGTGGGTTCAATCATTGCCCATCAGTG
66 CTTCTTGGTCTAAATCTTGTCCTCTCAACATGATGTGGGTTCAATCATTGCCCATCAGTG
* * * *
82177 TCTTA-ACTAGTACGGGCCTTCAAAATGCCTCATCACCTCAAATTGTAAGGCTCATTCTTCATAC
1 TCTTATACTAGTACGGGCCTTCAAAATGCCCCAACACCTCAAATTGTAAGGCTCACTCTTAATAC
*
82241 CTTCTTGGTCTGAATCTTG-CCATCTCAACATGATGTGGGTTCA
66 CTTCTTGGTCTAAATCTTGTCC-TCTCAACATGATGTGGGTTCA
82284 GTCGTACCCC
Statistics
Matches: 95, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
123 2 0.02
124 88 0.93
125 5 0.05
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.34
Consensus pattern (125 bp):
TCTTATACTAGTACGGGCCTTCAAAATGCCCCAACACCTCAAATTGTAAGGCTCACTCTTAATAC
CTTCTTGGTCTAAATCTTGTCCTCTCAACATGATGTGGGTTCAATCATTGCCCATCAGTG
Found at i:83570 original size:22 final size:22
Alignment explanation
Indices: 83546--83621 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
83536 GTTTGATCGA
83546 TTTTCTTTCACTC-TTTTTTTC
1 TTTTCTTTCACTCATTTTTTTC
*
83567 ATTTT-TCTCACTTCTAATTTTTTTC
1 -TTTTCTTTCAC-TC--ATTTTTTTC
* *
83592 TTTTCTTTC-TTCTTTTCTTTTC
1 TTTTCTTTCACTCATTT-TTTTC
83614 TTTTCTTT
1 TTTTCTTT
83622 TTCTCTTTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
21 8 0.18
22 19 0.43
23 2 0.05
24 4 0.09
25 11 0.25
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTTCTTTCACTCATTTTTTTC
Found at i:83597 original size:5 final size:5
Alignment explanation
Indices: 83587--83622 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
83577 CTTCTAATTT
83587 TTTTC TTTTC TTTCTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC -TT-TTC TTTTC TTTTC TTTTC TTTT
83623 TCTCTTTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 22 0.76
6 4 0.14
7 3 0.10
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:83607 original size:17 final size:17
Alignment explanation
Indices: 83585--83629 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
83575 CACTTCTAAT
83585 TTTTTTCTTTTC-TTTC
1 TTTTTTCTTTTCTTTTC
83601 TTCTTTTCTTTTCTTTTC
1 TT-TTTTCTTTTCTTTTC
83619 TTTTTCTCTTT
1 TTTTT-TCTTT
83630 CTACATTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 2 0.08
17 13 0.50
18 11 0.42
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTTCTTTTCTTTTC
Found at i:83630 original size:17 final size:17
Alignment explanation
Indices: 83546--83631 Score: 56
Period size: 17 Copynumber: 5.1 Consensus size: 17
83536 GTTTGATCGA
**
83546 TTTTCTTTCACTCTTT-
1 TTTTCTTTTTCTCTTTC
*
83562 TTTTCATTTTTCTCACTTC
1 TTTTC-TTTTTCTC-TTTC
*
83581 TAATT-TTTTTCT-TTTC
1 T-TTTCTTTTTCTCTTTC
83597 -TTTCTTCTTT-TCTTTTC
1 TTTTCTT-TTTCTC-TTTC
83614 TTTTCTTTTTCTCTTTC
1 TTTTCTTTTTCTCTTTC
83631 T
1 T
83632 ACATTTCTCT
Statistics
Matches: 54, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
14 2 0.04
15 3 0.06
16 11 0.20
17 18 0.33
18 17 0.31
19 1 0.02
20 2 0.04
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTCTTTTTCTCTTTC
Found at i:83630 original size:22 final size:22
Alignment explanation
Indices: 83587--83631 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
83577 CTTCTAATTT
83587 TTTTCTTTTCTTTCTTCTTTTC
1 TTTTCTTTTCTTTCTTCTTTTC
83609 TTTTCTTTTCTTT-TTCTCTTTC
1 TTTTCTTTTCTTTCTTCT-TTTC
83631 T
1 T
83632 ACATTTCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTCTTTTCTTTCTTCTTTTC
Found at i:83645 original size:17 final size:15
Alignment explanation
Indices: 83588--83651 Score: 51
Period size: 17 Copynumber: 4.1 Consensus size: 15
83578 TTCTAATTTT
*
83588 TTTCTTTTCTTTCTTC
1 TTTCTCTTCTTTC-TC
*
83604 TTTTCTTTTCTTT-TC
1 -TTTCTCTTCTTTCTC
*
83619 TTTTTC-TCTTTCTAC
1 TTTCTCTTCTTTCT-C
83634 ATTTCTCTTCTTTCTC
1 -TTTCTCTTCTTTCTC
83650 TT
1 TT
83652 CATGATGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
13 5 0.12
14 5 0.12
15 5 0.12
16 6 0.15
17 19 0.47
ACGTcount: A:0.03, C:0.25, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTCTCTTCTTTCTC
Found at i:86181 original size:21 final size:21
Alignment explanation
Indices: 86167--86210 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
86157 TGGTCTTTAT
86167 GTCTTTATGAATGGTCTTCTC
1 GTCTTTATGAATGGTCTTCTC
*
86188 GTCTTTATGAATGATCTTCTC
1 GTCTTTATGAATGGTCTTCTC
86209 GT
1 GT
86211 ACTTGGTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.48
Consensus pattern (21 bp):
GTCTTTATGAATGGTCTTCTC
Found at i:89750 original size:2 final size:2
Alignment explanation
Indices: 89743--89768 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
89733 TATACCCATA
89743 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
89769 TTACAGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:95962 original size:22 final size:22
Alignment explanation
Indices: 95932--95992 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
95922 GGCATGTGAA
*
95932 ATTTGTCCCGAATGACCTATGT
1 ATTTATCCCGAATGACCTATGT
*
95954 ATTTATCCCGAATGACCTTTGT
1 ATTTATCCCGAATGACCTATGT
* *
95976 ATATATCCCGAAGGACC
1 ATTTATCCCGAATGACC
95993 GTATAGACCC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (22 bp):
ATTTATCCCGAATGACCTATGT
Found at i:96435 original size:22 final size:22
Alignment explanation
Indices: 96379--96424 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
96369 AAAATACGGT
*
96379 ATGAACAGTATCGTGAACATTG
1 ATGAACAGTATCGCGAACATTG
96401 ATGAACAGTATCGCGAACATTG
1 ATGAACAGTATCGCGAACATTG
96423 AT
1 AT
96425 ATAGTGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (22 bp):
ATGAACAGTATCGCGAACATTG
Found at i:96451 original size:21 final size:21
Alignment explanation
Indices: 96418--96471 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
96408 GTATCGCGAA
* *
96418 CATTGATATAGTGTATCGATG
1 CATTGCTACAGTGTATCGATG
96439 CATTGCTACAGTGTATCGATG
1 CATTGCTACAGTGTATCGATG
96460 CATTGCTACAGT
1 CATTGCTACAGT
96472 ACTTTCATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (21 bp):
CATTGCTACAGTGTATCGATG
Found at i:97052 original size:18 final size:18
Alignment explanation
Indices: 97029--97143 Score: 122
Period size: 18 Copynumber: 5.9 Consensus size: 18
97019 ATTAAATATT
97029 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
97047 TGTCCCGAAGGACCACTGTATA
1 TGTCCCGAAGGACCAC----TA
*
97069 TGTCCCAAAGGACCACTA
1 TGTCCCGAAGGACCACTA
97087 TGTCCCGAAGGACCACTGTATA
1 TGTCCCGAAGGACCAC----TA
* *
97109 TGTCCCAAAGAACCACTA
1 TGTCCCGAAGGACCACTA
*
97127 TGTCCTGAAGGACCACT
1 TGTCCCGAAGGACCACT
97144 GTATAACCCT
Statistics
Matches: 82, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
18 49 0.60
22 33 0.40
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:97084 original size:40 final size:40
Alignment explanation
Indices: 97029--97148 Score: 213
Period size: 40 Copynumber: 3.0 Consensus size: 40
97019 ATTAAATATT
*
97029 TGTCCCGAAGGACCACTATGTCCCGAAGGACCACTGTATA
1 TGTCCCAAAGGACCACTATGTCCCGAAGGACCACTGTATA
97069 TGTCCCAAAGGACCACTATGTCCCGAAGGACCACTGTATA
1 TGTCCCAAAGGACCACTATGTCCCGAAGGACCACTGTATA
* *
97109 TGTCCCAAAGAACCACTATGTCCTGAAGGACCACTGTATA
1 TGTCCCAAAGGACCACTATGTCCCGAAGGACCACTGTATA
97149 ACCCTTGACT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (40 bp):
TGTCCCAAAGGACCACTATGTCCCGAAGGACCACTGTATA
Found at i:97709 original size:20 final size:20
Alignment explanation
Indices: 97684--97755 Score: 126
Period size: 20 Copynumber: 3.6 Consensus size: 20
97674 AATGAAGGTA
97684 TGTATCGATGCACTCTACAG
1 TGTATCGATGCACTCTACAG
*
97704 TGTATCGATGTACTCTACAG
1 TGTATCGATGCACTCTACAG
97724 TGTATCGATGCACTCTACAG
1 TGTATCGATGCACTCTACAG
*
97744 TTTATCGATGCA
1 TGTATCGATGCA
97756 TCCATTAACA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (20 bp):
TGTATCGATGCACTCTACAG
Found at i:101056 original size:11 final size:11
Alignment explanation
Indices: 101040--101064 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
101030 CAAATGATCA
101040 TTTTACCCTTC
1 TTTTACCCTTC
101051 TTTTACCCTTC
1 TTTTACCCTTC
101062 TTT
1 TTT
101065 CTTTCAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.32, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTACCCTTC
Found at i:101833 original size:18 final size:17
Alignment explanation
Indices: 101804--101842 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
101794 CTTCTAAAAT
101804 TTTTAAATTTTTATATA
1 TTTTAAATTTTTATATA
*
101821 TTTTAAATATTTTTTATA
1 TTTTAAAT-TTTTATATA
101839 TTTT
1 TTTT
101843 TATTACTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTAAATTTTTATATA
Found at i:101886 original size:25 final size:24
Alignment explanation
Indices: 101858--101922 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 24
101848 CTAATATACT
101858 TTTATTCCTTTAAAATTTTTATAAA
1 TTTATT-CTTTAAAATTTTTATAAA
* **
101883 TTTATTATTCTTCAATTTTTATAAA
1 TTTATTCTT-TAAAATTTTTATAAA
101908 TTTATTCTATTAAAA
1 TTTATTCT-TTAAAA
101923 AATTGCAGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
24 2 0.06
25 29 0.91
26 1 0.03
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (24 bp):
TTTATTCTTTAAAATTTTTATAAA
Found at i:104793 original size:21 final size:20
Alignment explanation
Indices: 104764--104828 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
104754 AACGTGTTAG
*
104764 ATAAAAAAATAAAATAAGATA
1 ATAAAAAAAAAAAATAA-ATA
*
104785 ATAAGAAAAAAAAATAAATA
1 ATAAAAAAAAAAAATAAATA
*
104805 A-AATATAAAAACAAATAAA-A
1 ATAA-A-AAAAAAAAATAAATA
104825 ATAA
1 ATAA
104829 GATGGTGAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
19 2 0.05
20 6 0.16
21 29 0.78
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (20 bp):
ATAAAAAAAAAAAATAAATA
Found at i:104796 original size:27 final size:26
Alignment explanation
Indices: 104766--104828 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
104756 CGTGTTAGAT
* *
104766 AAAAAAATAAAATAAGATAATAAGA-A
1 AAAAAAATAAAATAAAAT-ATAAAACA
104792 AAAAAAAT-AAATAAAATATAAAAACA
1 AAAAAAATAAAATAAAATAT-AAAACA
104818 AATAAAAATAA
1 AA-AAAAATAA
104829 GATGGTGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
24 2 0.06
25 11 0.35
26 11 0.35
27 6 0.19
28 1 0.03
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (26 bp):
AAAAAAATAAAATAAAATATAAAACA
Found at i:104814 original size:18 final size:17
Alignment explanation
Indices: 104768--104828 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
104758 TGTTAGATAA
*
104768 AAAAATAAAATAAGATAAT
1 AAAAATAAAA-AACA-AAT
*
104787 AAGAAA-AAAAAATAAAT
1 AA-AAATAAAAAACAAAT
104804 -AAAATATAAAAACAAAT
1 AAAAATA-AAAAACAAAT
104821 AAAAATAA
1 AAAAATAA
104829 GATGGTGAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
15 3 0.08
16 2 0.06
17 13 0.36
18 9 0.25
19 6 0.17
20 3 0.08
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (17 bp):
AAAAATAAAAAACAAAT
Found at i:104962 original size:30 final size:30
Alignment explanation
Indices: 104928--104997 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
104918 ATAAAGCAAA
* *
104928 ATAAAATAAAGACG-ATAATATATTAAATAG
1 ATAAAATAAAGA-GTAAAATAAATTAAATAG
*
104958 ATAAAATCAAGAGTAAAATAAATTAAATAG
1 ATAAAATAAAGAGTAAAATAAATTAAATAG
* *
104988 AGAAATTAAA
1 ATAAAATAAA
104998 TAGATGTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 1 0.03
30 32 0.97
ACGTcount: A:0.63, C:0.03, G:0.10, T:0.24
Consensus pattern (30 bp):
ATAAAATAAAGAGTAAAATAAATTAAATAG
Found at i:104995 original size:13 final size:13
Alignment explanation
Indices: 104977--105001 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104967 AGAGTAAAAT
104977 AAATTAAATAGAG
1 AAATTAAATAGAG
104990 AAATTAAATAGA
1 AAATTAAATAGA
105002 TGTAAAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTAAATAGAG
Found at i:105031 original size:16 final size:16
Alignment explanation
Indices: 105006--105036 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
104996 AATAGATGTA
105006 AAAGAAAAAAAAAAGT
1 AAAGAAAAAAAAAAGT
*
105022 AAAGATAAAAAAAAG
1 AAAGAAAAAAAAAAG
105037 CCATAACAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAAAAAAGT
Found at i:105170 original size:2 final size:2
Alignment explanation
Indices: 105163--105199 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
105153 AATATGTATG
105163 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
105200 GAATGTTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:107711 original size:36 final size:36
Alignment explanation
Indices: 107652--107897 Score: 118
Period size: 39 Copynumber: 6.8 Consensus size: 36
107642 GAAACGTTTT
** *
107652 CAAAGTTTATGTTTCAATAGAAACTGTCTCTAGGGAGA
1 CAAA-TTT-TGTTTCAAGGGAAACTATCTCTAGGGAGA
* *
107690 CAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAGA
1 CAAATTTTGTTTCAAGGGAAACTATCTCTAGGGAGA
* ** * *
107726 CAAAATTCATTTCAAGGGAAA-TGT-T-T------T
1 CAAATTTTGTTTCAAGGGAAACTATCTCTAGGGAGA
** * *
107753 C-AATGTTTACGTTTCAAGAAAAACTGTCTCAAGGGAGA
1 CAAAT-TTT--GTTTCAAGGGAAACTATCTCTAGGGAGA
*
107791 CAAAATTTTGTTTCAAGGGAAACTATCT-TAAGCGAGA
1 C-AAATTTTGTTTCAAGGGAAACTATCTCT-AGGGAGA
* * *
107828 CAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCGAAA
1 C-AAAT-TT-TGTTTCAAGGGAAACTATCTCTAGGGAGA
* *
107867 TAAAATCTTTTGTTTCGAGGGAAACTATCTC
1 -CAAA--TTTTGTTTCAAGGGAAACTATCTC
107898 AAAATCTTCT
Statistics
Matches: 160, Mismatches: 27, Indels: 41
0.70 0.12 0.18
Matches are distributed among these distances:
26 2 0.01
27 3 0.02
29 10 0.06
30 3 0.02
31 1 0.01
34 1 0.01
35 2 0.01
36 42 0.26
37 31 0.19
38 7 0.04
39 52 0.32
40 5 0.03
41 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (36 bp):
CAAATTTTGTTTCAAGGGAAACTATCTCTAGGGAGA
Found at i:107777 original size:101 final size:104
Alignment explanation
Indices: 107634--107852 Score: 327
Period size: 101 Copynumber: 2.1 Consensus size: 104
107624 ATATTTTGTG
* * * *
107634 TTTCAAGGGAAACGTTTTCAAAGTTTATGTTTCAATAGAAACTGTCTCTAGGGAGAC-AAATTTT
1 TTTCAAGGGAAACGTTTTCAAAGTTTACGTTTCAAGAAAAACTGTCTCAAGGGAGACAAAATTTT
107698 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TTC-A
66 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAACTTCTA
* *
107735 TTTCAAGGGAAATGTTTTCAATGTTTACGTTTCAAGAAAAACTGTCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAACGTTTTCAAAGTTTACGTTTCAAGAAAAACTGTCTCAAGGGAGACAAAATTTT
* * *
107800 GTTTCAAGGGAAACTATCTTAAGCGAGACAAAATCTTCTG
66 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-CTTCTA
107840 TTTCAAGGGAAAC
1 TTTCAAGGGAAAC
107853 TATCTCAAGC
Statistics
Matches: 104, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
101 51 0.49
102 38 0.37
104 3 0.03
105 12 0.12
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (104 bp):
TTTCAAGGGAAACGTTTTCAAAGTTTACGTTTCAAGAAAAACTGTCTCAAGGGAGACAAAATTTT
GTTTCAAGGGAAACTATCTCAAGAGAGACAAAACTTCTA
Found at i:107851 original size:39 final size:38
Alignment explanation
Indices: 107763--107899 Score: 177
Period size: 39 Copynumber: 3.6 Consensus size: 38
107753 CAATGTTTAC
** * *
107763 GTTTCAAGAAAAACTGTCTCAAGGGAGACAAAAT-TTT
1 GTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTT
*
107800 GTTTCAAGGGAAACTATCTTAAGCGAGACAAAATCTTCT
1 GTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTT-T
* *
107839 GTTTCAAGGGAAACTATCTCAAGCGAAATAAAATCTTTT
1 GTTTCAAGGGAAACTATCTCAAGCGAGACAAAATC-TTT
*
107878 GTTTCGAGGGAAACTATCTCAA
1 GTTTCAAGGGAAACTATCTCAA
107900 AATCTTCTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
37 29 0.33
38 2 0.02
39 55 0.62
40 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.28
Consensus pattern (38 bp):
GTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTT
Found at i:108026 original size:36 final size:36
Alignment explanation
Indices: 107911--108038 Score: 105
Period size: 36 Copynumber: 3.5 Consensus size: 36
107901 ATCTTCTTTA
107911 AAAACAGTCTTGAGTGAAATGAAATGCCTTCTTTCGAGT
1 AAAACAGTCTTGAGTGAAAT-AAAT--CTTCTTTCGAGT
* * * * * * ** *
107950 GAAAACGGTC-TCAGCGAGACAAATCTTGTTTTAAGA
1 -AAAACAGTCTTGAGTGAAATAAATCTTCTTTCGAGT
*
107986 AAAACAATCTTGAGTGAAATAAATCTTCTTTCGAGT
1 AAAACAGTCTTGAGTGAAATAAATCTTCTTTCGAGT
* *
108022 AAAACTGTCTTAAGTGA
1 AAAACAGTCTTGAGTGA
108039 GACAAAGTCT
Statistics
Matches: 65, Mismatches: 22, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
35 7 0.11
36 40 0.62
38 4 0.06
39 6 0.09
40 8 0.12
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (36 bp):
AAAACAGTCTTGAGTGAAATAAATCTTCTTTCGAGT
Found at i:108041 original size:72 final size:74
Alignment explanation
Indices: 107910--108066 Score: 207
Period size: 72 Copynumber: 2.1 Consensus size: 74
107900 AATCTTCTTT
* *
107910 AAAAACAGTCTTGAGTGAAATGAAATGCCTTCTTTCGAGTGAAAACGGTCTCAGCGAGACAAA-T
1 AAAAACAATCTTGAGTGAAATGAAAT-CCTTCTTTCGAGTGAAAACGGTCTAAGCGAGACAAAGT
*
107974 CTTGTTTTAAG
65 C-TGTTTCAAG
* *
107985 AAAAACAATCTTGAGTGAAAT-AAAT-CTTCTTTCGAGT-AAAACTGTCTTAAGTGAGACAAAGT
1 AAAAACAATCTTGAGTGAAATGAAATCCTTCTTTCGAGTGAAAACGGTC-TAAGCGAGACAAAGT
108047 CTGTTTCAAG
65 CTGTTTCAAG
108057 -AAAACAATCT
1 AAAAACAATCT
108067 CAAAGATAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
71 18 0.24
72 31 0.41
73 2 0.03
74 4 0.05
75 20 0.27
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (74 bp):
AAAAACAATCTTGAGTGAAATGAAATCCTTCTTTCGAGTGAAAACGGTCTAAGCGAGACAAAGTC
TGTTTCAAG
Found at i:109373 original size:94 final size:90
Alignment explanation
Indices: 109141--109389 Score: 306
Period size: 94 Copynumber: 2.7 Consensus size: 90
109131 AGCTGAATTG
* * * * *
109141 ATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGATAGCTTAATATCATTGTA-TATATATTA
1 ATAAAG-CGGGGCGTTTAACCAATTGCT-TAGAGGGACAAC-TCA-AGC-TT-TATTGTATA-TA
109205 TAATCACCTTATCAGGCTAGCTGAATATATCC
59 TAATCACCTTATCAGGCTAGCTGAATATATCC
* *
109237 ATAAAGCTGGGGCG-TTAACCAATTGC-TAGAGGGACATCTCAAGCTTTATTGTATATGTAATCA
1 ATAAAGC-GGGGCGTTTAACCAATTGCTTAGAGGGACAACTCAAGCTTTATTGTATATATAATCA
109300 CCTTTATCAGGCTAGCTGAATATTATCC
65 CC-TTATCAGGCTAGCTGAATA-TATCC
109328 ATAAAGTCGGGGCGTTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATATATA
1 ATAAAG-CGGGGCGTTTAACCAATTGC-TTAGAGGGACAACTCAAGCTTTATTGTATATATA
109390 TTGTAATCTG
Statistics
Matches: 137, Mismatches: 8, Indels: 18
0.84 0.05 0.11
Matches are distributed among these distances:
89 11 0.08
90 26 0.19
91 19 0.14
92 15 0.11
93 10 0.07
94 31 0.23
95 13 0.09
96 12 0.09
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (90 bp):
ATAAAGCGGGGCGTTTAACCAATTGCTTAGAGGGACAACTCAAGCTTTATTGTATATATAATCAC
CTTATCAGGCTAGCTGAATATATCC
Found at i:113872 original size:2 final size:2
Alignment explanation
Indices: 113865--113896 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
113855 TAACTTAGGC
*
113865 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
113897 GTATGTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:115500 original size:18 final size:19
Alignment explanation
Indices: 115477--115543 Score: 54
Period size: 20 Copynumber: 3.6 Consensus size: 19
115467 AGAACGTGTC
115477 AGATAA-AA-AAAGAAAATA
1 AGATAATAAGAAA-AAAATA
115495 AGATAATAAGAAAAAAATAA
1 AGATAATAAGAAAAAAAT-A
*
115515 AGAAAATATA-AAAACAAATA
1 AGATAATA-AGAAAA-AAATA
115535 A-A-AATAAGA
1 AGATAATAAGA
115544 TGGTGAGATA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
17 1 0.02
18 11 0.26
19 8 0.19
20 17 0.40
21 5 0.12
ACGTcount: A:0.76, C:0.01, G:0.09, T:0.13
Consensus pattern (19 bp):
AGATAATAAGAAAAAAATA
Found at i:115522 original size:20 final size:20
Alignment explanation
Indices: 115484--115536 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
115474 GTCAGATAAA
*
115484 AAAAGAAAAT-AAGATAATA-
1 AAAA-AAAATAAAGAAAATAT
115503 AGAAAAAAATAAAGAAAATAT
1 A-AAAAAAATAAAGAAAATAT
115524 AAAAACAAATAAA
1 AAAAA-AAATAAA
115537 AATAAGATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 6 0.21
20 15 0.52
21 8 0.28
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.13
Consensus pattern (20 bp):
AAAAAAAATAAAGAAAATAT
Found at i:115625 original size:24 final size:23
Alignment explanation
Indices: 115592--115647 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
115582 AACCACAAAG
115592 AAGATAAA-AGAAATGAAAATATAAA
1 AAGATAAAGA-AAAT-AAAATA-AAA
*
115617 AAGATAAAGCAAAATAAAATAAAG
1 AAGATAAAG-AAAATAAAATAAAA
115641 AAGATAA
1 AAGATAA
115648 TATATTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 9 0.32
25 14 0.50
26 4 0.14
27 1 0.04
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.14
Consensus pattern (23 bp):
AAGATAAAGAAAATAAAATAAAA
Found at i:115666 original size:30 final size:30
Alignment explanation
Indices: 115630--115699 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
115620 ATAAAGCAAA
* *
115630 ATAAAATAAAGAAG-ATAATATATTAAATAG
1 ATAAAATAAAG-AGTAAAATAAATTAAATAG
*
115660 ATAAAATCAAGAGTAAAATAAATTAAATAG
1 ATAAAATAAAGAGTAAAATAAATTAAATAG
* *
115690 AGAAATTAAA
1 ATAAAATAAA
115700 TAGATGTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 2 0.06
30 31 0.94
ACGTcount: A:0.64, C:0.01, G:0.10, T:0.24
Consensus pattern (30 bp):
ATAAAATAAAGAGTAAAATAAATTAAATAG
Found at i:115697 original size:13 final size:13
Alignment explanation
Indices: 115679--115703 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115669 AGAGTAAAAT
115679 AAATTAAATAGAG
1 AAATTAAATAGAG
115692 AAATTAAATAGA
1 AAATTAAATAGA
115704 TGTAAAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTAAATAGAG
Found at i:115863 original size:2 final size:2
Alignment explanation
Indices: 115851--115890 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
115841 CAAAGGATAA
*
115851 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
115891 TAATGTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:118366 original size:2 final size:2
Alignment explanation
Indices: 118359--118384 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
118349 ATTTAAATAA
118359 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
118385 TAATAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:119370 original size:21 final size:21
Alignment explanation
Indices: 119322--119394 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 21
119312 ACCACCGCCG
* *
119322 CCGCCGTCTTCC-TTCT-TCT
1 CCGCCGCCTTCCTTTTTCTCT
*
119341 CC-CCACCTTCCTTTTTCTCT
1 CCGCCGCCTTCCTTTTTCTCT
*
119361 CCGCCGCCTTCTTTTTTCTCT
1 CCGCCGCCTTCCTTTTTCTCT
*
119382 CCGCCTCC-TCCTT
1 CCGCCGCCTTCCTT
119395 CCTTCTTCTC
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
18 7 0.16
19 5 0.11
20 9 0.20
21 23 0.52
ACGTcount: A:0.01, C:0.49, G:0.07, T:0.42
Consensus pattern (21 bp):
CCGCCGCCTTCCTTTTTCTCT
Found at i:119461 original size:21 final size:21
Alignment explanation
Indices: 119436--119486 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
119426 TTTTGGTTTC
119436 TCTTTCTTCTCACCGGCGGCG
1 TCTTTCTTCTCACCGGCGGCG
*
119457 TCTTTCTTCTCACCGGCGTCG
1 TCTTTCTTCTCACCGGCGGCG
119478 TCTTTCTTC
1 TCTTTCTTC
119487 GGAGGAACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.04, C:0.37, G:0.18, T:0.41
Consensus pattern (21 bp):
TCTTTCTTCTCACCGGCGGCG
Found at i:124313 original size:2 final size:2
Alignment explanation
Indices: 124306--124338 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
124296 TTATTAATTA
124306 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
124339 TAAATTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:146716 original size:25 final size:27
Alignment explanation
Indices: 146668--146723 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 27
146658 AATTTCGATT
146668 TTTTCAGTTATCGATTTTTTGGATC-GA
1 TTTTCAGTTATC-ATTTTTTGGATCGGA
*
146695 TTTTCAGTTAT-TTTTTTTGGATCGGA
1 TTTTCAGTTATCATTTTTTGGATCGGA
146721 TTT
1 TTT
146724 GATCTGAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 11 0.41
26 5 0.19
27 11 0.41
ACGTcount: A:0.16, C:0.09, G:0.18, T:0.57
Consensus pattern (27 bp):
TTTTCAGTTATCATTTTTTGGATCGGA
Found at i:147699 original size:32 final size:34
Alignment explanation
Indices: 147658--147737 Score: 101
Period size: 35 Copynumber: 2.4 Consensus size: 34
147648 TTTAAATAGT
*
147658 TATTATTTTTTATATT-AAT-ATATTTATGTAAA
1 TATTATTTTTTATATTAAATAATATTTATATAAA
* *
147690 TATTATTTTTTTTATTAAAATAATATTTATATAAT
1 TATTATTTTTTATATT-AAATAATATTTATATAAA
147725 TATTATTTATTTA
1 TATTATTT-TTTA
147738 GAATTATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
32 15 0.38
34 3 0.08
35 19 0.47
36 3 0.08
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (34 bp):
TATTATTTTTTATATTAAATAATATTTATATAAA
Found at i:147701 original size:34 final size:33
Alignment explanation
Indices: 147625--147732 Score: 94
Period size: 35 Copynumber: 3.1 Consensus size: 33
147615 GTGGTAAGAA
* *
147625 ATTTATTTTTATGTTAGTAT-TTT-TTTAAATAGTT
1 ATTT-TTTTTAT-TTAATATATTTATATAAATA-TT
*
147659 ATTATTTTTTATATTAATATATTTATGTAAATATT
1 ATT-TTTTTTAT-TTAATATATTTATATAAATATT
* *
147694 ATTTTTTTTATTAAAATAATATTTATATAATTATT
1 ATTTTTTTTATT-TAAT-ATATTTATATAAATATT
147729 ATTT
1 ATTT
147733 ATTTAGAATT
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
33 1 0.02
34 27 0.43
35 28 0.44
36 7 0.11
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (33 bp):
ATTTTTTTTATTTAATATATTTATATAAATATT
Found at i:147900 original size:17 final size:17
Alignment explanation
Indices: 147878--147931 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
147868 AATGTTAATA
147878 TTTAAATTTATTTTTAT
1 TTTAAATTTATTTTTAT
* * * *
147895 TTTAAAGTTATTATGAA
1 TTTAAATTTATTTTTAT
* *
147912 TTTATATTAATTTTTAT
1 TTTAAATTTATTTTTAT
147929 TTT
1 TTT
147932 TTATAATATA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTAAATTTATTTTTAT
Found at i:149461 original size:21 final size:21
Alignment explanation
Indices: 149431--149478 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
149421 GCAGGGGTAC
* *
149431 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
149452 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
149473 ATGCCA
1 ATGCCA
149479 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:149508 original size:21 final size:21
Alignment explanation
Indices: 149482--149575 Score: 122
Period size: 21 Copynumber: 4.5 Consensus size: 21
149472 TATGCCATCT
*
149482 CCGCAGGGTTACAT-TCTGAGC
1 CCGCAGGGTTACATGCCT-AGC
*
149503 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
149524 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
149545 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
149566 CCGCAGGGTT
1 CCGCAGGGTT
149576 TTATACCATA
Statistics
Matches: 68, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
20 2 0.03
21 62 0.91
22 4 0.06
ACGTcount: A:0.18, C:0.34, G:0.27, T:0.21
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:150146 original size:33 final size:33
Alignment explanation
Indices: 150097--150192 Score: 113
Period size: 33 Copynumber: 2.9 Consensus size: 33
150087 AAATGTTTTT
*
150097 AAAATACAAATTATATTTTCGAAATTTAAAATA
1 AAAATAAAAATTATATTTTCGAAATTTAAAATA
* * *
150130 AAAATAAAAATAATATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATT-TTCGAAATTTAAAATA
* *
150163 AAAATATAAATTATAGTATTCGAAATTTAA
1 AAAATAAAAATTATA-TTTTCGAAATTTAA
150193 CATTAAATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
33 41 0.77
34 12 0.23
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (33 bp):
AAAATAAAAATTATATTTTCGAAATTTAAAATA
Found at i:150821 original size:128 final size:128
Alignment explanation
Indices: 150593--151221 Score: 1125
Period size: 128 Copynumber: 4.9 Consensus size: 128
150583 TTACCTGATT
150593 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
150658 TGATGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
150721 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
** * *
150786 TGATAAAATAATGGAAGGCACGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATATG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
150849 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGAGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
150914 TGACAAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
150977 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*** *
151042 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTCCCCT-GAGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGT-GAATAGTGAAATAATAGG
* *
151105 TAATGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCGATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
151170 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGT
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGT
151222 ACTCCGATTA
Statistics
Matches: 480, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
127 1 0.00
128 478 1.00
129 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (128 bp):
TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:151305 original size:8 final size:8
Alignment explanation
Indices: 151292--151332 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
151282 TCACAATCTT
151292 TCAAATTC
1 TCAAATTC
151300 TCAAATTC
1 TCAAATTC
* *
151308 CCAAACTC
1 TCAAATTC
151316 T-AAATTC
1 TCAAATTC
151323 TCAAATTC
1 TCAAATTC
151331 TC
1 TC
151333 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:155841 original size:3 final size:3
Alignment explanation
Indices: 155835--155891 Score: 105
Period size: 3 Copynumber: 18.7 Consensus size: 3
155825 TTATTTTTAA
155835 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT
155881 ATT ATT ATT AT
1 ATT ATT ATT AT
155892 GAAATAAAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 50 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:157468 original size:149 final size:150
Alignment explanation
Indices: 157302--157692 Score: 409
Period size: 149 Copynumber: 2.6 Consensus size: 150
157292 GTTTAAATAA
157302 TAATATTTATTTATTTTTTAATATTAAGAAAGGGCAGTCTTAATATAACTAGATGTCTTATTCTG
1 TAATATTTATTTATTTTTTAATATTAAGAAAGGGCAGTCTTAATATAACTAGATGTCTTATTCTG
* * * * * *
157367 GTATTTTAAATAAATAAAAA--TT-ATATATATTTTTATTTTATTTTATTTTA-TTTAAATTATT
66 ATATTTTAAATAAATAAAAATCTTCATATAAATGTATA-TATA-TTTA-CTTAGTTTAAATTATT
157428 TTTTAGAAAAATTATCACATT-T
128 TTTTAGAAAAATTATCACATTCT
* * *
157450 TCAATATTTATTTATTTTTTAATATTAAGAAAGGGCGGTCTT-ATAATAACTAGACGTCCTATTC
1 T-AATATTTATTTATTTTTTAATATTAAGAAAGGGCAGTCTTAAT-ATAACTAGATGTCTTATTC
* * **
157514 TGATATTTTAAAAATAAATAAATATCTTGCTTATAAATGTATATATATTTACTTAGTTTTTATTA
64 TGATATTTT--AAATAAATAAAAATCTT-CATATAAATGTATATATATTTACTTAGTTTAAATTA
* *
157579 TTTTTTAGAAAAATTATTATATTCT
126 TTTTTTAGAAAAATTATCACATTCT
* * * * *
157604 TATTATCATTTATTTATTTATTAATATTAAAGAAAAGACAGTCTTAAAAGAAACTAGATGTCATT
1 TA--AT-ATTTATTTATTTTTTAATATT-AAGAAAGGGCAGTCTTAATA-TAACTAGATGTC-TT
*
157669 -TTCTAATATTTTTAAATAAATAAA
60 ATTCTGATA-TTTTAAATAAATAAA
157693 TACTTTATTT
Statistics
Matches: 201, Mismatches: 24, Indels: 27
0.80 0.10 0.11
Matches are distributed among these distances:
148 3 0.01
149 64 0.32
151 12 0.06
152 3 0.01
153 35 0.17
154 5 0.02
155 11 0.05
156 20 0.10
157 25 0.12
158 18 0.09
159 5 0.02
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (150 bp):
TAATATTTATTTATTTTTTAATATTAAGAAAGGGCAGTCTTAATATAACTAGATGTCTTATTCTG
ATATTTTAAATAAATAAAAATCTTCATATAAATGTATATATATTTACTTAGTTTAAATTATTTTT
TAGAAAAATTATCACATTCT
Found at i:166772 original size:54 final size:54
Alignment explanation
Indices: 166670--166884 Score: 242
Period size: 54 Copynumber: 4.0 Consensus size: 54
166660 CTGACCAGGA
*
166670 ATCTGTGCAGAAA-CCAC-AGAAAATGATGAATGT-TTGTCAAATATTTTACGAAC
1 ATCTGTGCA-AAAGCCACAAG-AAATGATGAATGTGTTGTCAAATGTTTTACGAAC
* *
166723 ATCTGTGCAAAAGCCACAAGAAATGATGAATGTGTTGTCAAATGCTTTACAAAC
1 ATCTGTGCAAAAGCCACAAGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
* * * * *
166777 ATCTGGGCAGAAGCCACAGGAAA-GAATGAATGTGTTGTCAAATGTTTTACTAGC
1 ATCTGTGCAAAAGCCACAAGAAATG-ATGAATGTGTTGTCAAATGTTTTACGAAC
* * * * *
166831 ATCTGAG-AATAAACCACATGAGATGATGAATGTATTGTCAAATGTTTTACGAAC
1 ATCTGTGCAA-AAGCCACAAGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
166885 CAGTTATTCT
Statistics
Matches: 139, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
52 3 0.02
53 28 0.20
54 107 0.77
55 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (54 bp):
ATCTGTGCAAAAGCCACAAGAAATGATGAATGTGTTGTCAAATGTTTTACGAAC
Found at i:166858 original size:108 final size:107
Alignment explanation
Indices: 166670--166880 Score: 273
Period size: 108 Copynumber: 2.0 Consensus size: 107
166660 CTGACCAGGA
* *
166670 ATCTGTGCAGAAACCACAGAAAATGATGAATGTTTGTCAAATATTTTACGAACATCTGTGCAAAA
1 ATCTGGGCAGAAACCACAGAAAATGATGAATGTTTGTCAAATATTTTACGAACATCTGAGCAAAA
* *
166735 GCCACAAGAAATGATGAATGTGTTGTCAAATGCTTTACAAAC
66 ACCACAAGAAATGATGAATGTATTGTCAAATGCTTTACAAAC
* * * * *
166777 ATCTGGGCAGAAGCCACAGGAAA-GAATGAATGTGTTGTCAAATGTTTTACTAGCATCTGAG-AA
1 ATCTGGGCAGAAACCACAGAAAATG-ATGAATGT-TTGTCAAATATTTTACGAACATCTGAGCAA
* * *
166840 TAAACCACATGAGATGATGAATGTATTGTCAAATGTTTTAC
64 -AAACCACAAGAAATGATGAATGTATTGTCAAATGCTTTAC
166881 GAACCAGTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
106 1 0.01
107 30 0.34
108 58 0.65
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (107 bp):
ATCTGGGCAGAAACCACAGAAAATGATGAATGTTTGTCAAATATTTTACGAACATCTGAGCAAAA
ACCACAAGAAATGATGAATGTATTGTCAAATGCTTTACAAAC
Found at i:167266 original size:22 final size:22
Alignment explanation
Indices: 167240--167297 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
167230 ATCTACACTC
167240 TCAAAGATGATAGATTCTCTCT
1 TCAAAGATGATAGATTCTCTCT
*
167262 TCAAAGATGATAGATTCTTTCT
1 TCAAAGATGATAGATTCTCTCT
167284 TCAAAGATGATAGA
1 TCAAAGATGATAGA
167298 CACTCTCCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (22 bp):
TCAAAGATGATAGATTCTCTCT
Found at i:168126 original size:74 final size:74
Alignment explanation
Indices: 168003--168564 Score: 971
Period size: 74 Copynumber: 7.6 Consensus size: 74
167993 TTATTTTCGA
* *
168003 GTCATCTGTAAGACCTACAGTGTATGATGTTTTCAAAAATCCTTCGGGAGCTTTTTGATATTTAA
1 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
168068 AGCCTCCGG
66 AGCCTCCGG
*
168077 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTTGGGAGCTTTTTGATATTTAA
1 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
*
168142 AGACTCCGG
66 AGCCTCCGG
** *
168151 GTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
1 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
168216 AGCCTCCGG
66 AGCCTCCGG
*
168225 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTAA
1 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
*
168290 AGCCTCCAG
66 AGCCTCCGG
*
168299 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCATTTTGATATTTAA
1 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
*
168364 AGCCTCCGA
66 AGCCTCCGG
*
168373 GTCATTTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
1 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
*
168438 AGCCTCCAG
66 AGCCTCCGG
168447 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
1 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
168512 AGCCTCCGG
66 AGCCTCCGG
** **
168521 GTCATCCATAAGACCTACAGTGCGGGATGTTTTCAAAAAGCCTT
1 GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTT
168565 TGGGTCATCT
Statistics
Matches: 460, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 460 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (74 bp):
GTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAA
AGCCTCCGG
Found at i:168923 original size:16 final size:16
Alignment explanation
Indices: 168904--168936 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
168894 TTTTAAAATT
*
168904 TTTATTTTTATTATTA
1 TTTATTGTTATTATTA
168920 TTTATTGTTATTATTA
1 TTTATTGTTATTATTA
168936 T
1 T
168937 GAAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (16 bp):
TTTATTGTTATTATTA
Found at i:170265 original size:23 final size:23
Alignment explanation
Indices: 170207--170279 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
170197 TTATTTGTAA
170207 TATTATTTTATTATTACTTT--T
1 TATTATTTTATTATTACTTTCAT
* **
170228 GATATATGTAAATTATTACTTTCAT
1 TAT-TAT-TTTATTATTACTTTCAT
* *
170253 TATTATTTTATTACTATTTTCA-
1 TATTATTTTATTATTACTTTCAT
170275 TATTA
1 TATTA
170280 GTCATATAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 24 0.60
24 3 0.08
25 3 0.08
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (23 bp):
TATTATTTTATTATTACTTTCAT
Found at i:176446 original size:47 final size:45
Alignment explanation
Indices: 176374--176499 Score: 175
Period size: 47 Copynumber: 2.8 Consensus size: 45
176364 TATAAAATCC
176374 CTTACCATTTA-TCCTATAAGCTCGTAAGCTTATTTTACCAAAATA
1 CTTACCATTTATTCC-ATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
176419 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTACCCATATA
1 CTTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
176466 CTTGCCA-TTATTCCAAAAGCTCGTAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
176500 GTATGCTTAC
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
44 24 0.32
45 10 0.14
46 2 0.03
47 35 0.47
48 3 0.04
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:184732 original size:28 final size:29
Alignment explanation
Indices: 184683--184738 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
184673 GAATAAAGAG
**
184683 AAAATAATGTAACAAAGAAAAG-AAAAAT
1 AAAATAAAATAACAAAGAAAAGTAAAAAT
184711 AAAATAAAATAACAAA-AGAAAGTAAAAA
1 AAAATAAAATAACAAAGA-AAAGTAAAAA
184739 ACTAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 1 0.04
28 18 0.75
29 5 0.21
ACGTcount: A:0.75, C:0.04, G:0.09, T:0.12
Consensus pattern (29 bp):
AAAATAAAATAACAAAGAAAAGTAAAAAT
Found at i:186459 original size:6 final size:6
Alignment explanation
Indices: 186448--186475 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
186438 TGTTTGCATA
186448 TGTGGG TGTGGG TGTGGG TGTGGG TGTG
1 TGTGGG TGTGGG TGTGGG TGTGGG TGTG
186476 TTATCTATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.64, T:0.36
Consensus pattern (6 bp):
TGTGGG
Done.