genome.fa.s773.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000773.1 Hibiscus syriacus cultivar Beakdansim tig00001501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123021

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2500--2537	19	2.0	19	100	0	76	36	21	5	36	1.76
3283--3339	21	2.8	20	78	5	69	43	14	19	22	1.86
6129--6154	12	2.2	12	100	0	52	69	0	7	23	1.14
8776--8904	59	2.2	59	80	14	151	31	13	19	36	1.90
10010--10064	25	2.2	25	80	0	65	21	16	20	41	1.90
13230--13289	30	2.0	29	93	3	102	31	25	18	25	1.97
13655--13780	47	2.8	45	85	5	164	30	23	7	38	1.81
15225--15288	29	2.2	30	80	5	76	34	23	4	37	1.76
17889--17984	6	16.3	6	72	15	67	5	16	2	76	1.07
17890--17929	17	2.3	17	86	4	53	5	20	0	75	0.99
17897--17950	22	2.4	23	84	12	76	7	16	1	74	1.14
17868--17984	18	6.6	18	73	12	82	7	14	1	76	1.09
20369--20429	30	2.0	30	90	0	95	31	26	18	24	1.97
20409--20443	12	2.9	12	95	0	61	34	28	17	20	1.95
20807--20932	47	2.8	45	82	5	146	30	21	7	41	1.80
22376--22438	29	2.2	29	85	0	81	34	22	4	38	1.75
24493--24561	20	3.4	20	75	2	66	36	24	8	30	1.86
24469--24561	40	2.3	41	83	5	109	37	26	8	26	1.85
24531--24639	20	5.4	20	78	3	103	30	20	12	36	1.90
24531--24639	40	2.7	40	84	1	146	30	20	12	36	1.90
25430--25463	12	2.8	12	90	0	50	55	29	0	14	1.40
25589--25642	24	2.2	24	90	0	81	20	18	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29635--29729	21	4.6	20	76	6	84	23	20	36	20	1.95
29635--29729	42	2.3	42	81	5	113	23	20	36	20	1.95
30085--30128	21	2.1	21	83	8	54	34	34	11	20	1.88
30287--30385	42	2.4	42	89	0	153	16	18	37	28	1.92
31768--31806	20	2.0	20	94	0	69	17	12	17	51	1.76
31770--31813	20	2.2	20	87	0	61	18	13	18	50	1.79
32147--32204	22	2.6	22	91	0	98	17	18	44	18	1.87
32308--32345	20	2.0	20	84	5	51	44	13	15	26	1.83
33416--33454	2	20.5	2	89	10	64	51	0	0	48	1.00
36475--36505	3	10.0	3	93	6	53	32	0	0	67	0.91
37704--37737	15	2.4	14	85	5	50	20	0	0	79	0.73
39905--39948	21	2.1	21	91	0	70	47	25	0	27	1.52
41798--41925	41	3.1	41	67	15	120	35	17	15	31	1.92
41798--41928	42	3.2	42	67	16	128	35	18	16	30	1.92
41756--42117	82	4.4	84	85	2	389	33	18	17	30	1.94
42095--42173	42	1.9	42	86	2	115	32	26	13	26	1.94
41988--42140	83	1.8	83	84	5	202	35	19	18	26	1.95
42796--42958	37	4.5	37	77	12	151	45	2	4	47	1.35
42796--42846	19	2.6	19	76	14	50	47	3	0	49	1.20
42868--42958	19	5.1	17	69	20	62	45	2	3	49	1.30
42830--42933	33	3.0	33	83	8	102	46	1	5	46	1.38
45507--45620	37	3.1	37	82	2	165	46	3	7	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46177--46211	15	2.3	15	100	0	70	20	0	0	80	0.72
49887--52882	106	28.3	106	95	0	5241	33	25	18	22	1.96
53157--53200	18	2.4	18	80	0	52	27	0	4	68	1.09
54381--54415	15	2.3	15	85	0	52	20	0	0	80	0.72
56584--56627	21	2.1	21	91	0	70	47	25	0	27	1.52
58435--58656	82	2.7	82	81	5	241	34	18	17	29	1.94
58435--58719	83	3.5	82	79	4	288	33	18	17	29	1.94
58692--58770	42	1.9	42	86	2	115	32	26	13	26	1.94
59392--59554	37	4.5	37	77	12	151	45	2	4	47	1.35
59392--59442	19	2.6	19	76	14	50	47	3	0	49	1.20
59464--59554	19	5.1	17	69	20	62	45	2	3	49	1.30
59426--59529	33	3.0	33	83	8	102	46	1	5	46	1.38
80986--81156	37	4.6	38	78	10	122	44	4	5	45	1.47
80986--81155	75	2.3	75	79	10	179	44	4	5	45	1.45
81019--81180	37	4.4	38	78	6	145	43	6	6	43	1.54
81284--81378	37	2.6	37	87	0	136	45	4	6	44	1.48
83118--83248	44	3.0	43	85	6	165	23	20	20	35	1.96
86602--86654	20	2.8	18	75	13	61	32	1	3	62	1.24
86917--86961	23	2.0	23	95	0	81	42	6	6	44	1.57
89602--89626	12	2.1	12	100	0	50	68	16	8	8	1.38
99886--99943	17	3.4	17	87	0	80	62	3	12	22	1.45
100861--100906	23	2.0	23	86	0	65	34	23	13	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111226--111267	4	10.5	4	85	10	59	71	0	0	28	0.86
111215--111266	24	2.2	24	89	6	79	69	0	1	28	0.99
111779--111814	3	12.0	3	87	0	54	36	2	33	27	1.72
112331--112376	22	2.0	23	83	4	58	21	4	10	63	1.44
118033--118074	2	21.0	2	100	0	84	50	0	0	50	1.00
121446--121491	2	23.0	2	95	0	83	47	2	0	50	1.13

Tables:   1

The End!