Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007732.1 Hibiscus syriacus cultivar Beakdansim tig00109984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85300

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2644--2698
20
2.8
20
97
2
103
30
23
9
36
1.86
2868--2897
12
2.5
12
100
0
60
60
16
6
16
1.56
7925--7976
14
3.5
14
74
10
50
34
1
21
42
1.64
7925--7999
15
5.0
15
75
10
73
34
4
21
40
1.72
7926--7996
29
2.3
32
79
13
87
35
2
22
39
1.69
7927--8008
15
5.5
15
76
12
71
37
4
19
37
1.73
8147--8211
23
2.8
23
80
2
76
21
18
23
36
1.95
8780--8823
17
2.6
16
79
10
52
47
6
9
36
1.62
14902--14980
15
5.3
15
72
13
56
40
5
15
39
1.69
15117--15208
24
3.9
23
81
4
96
22
21
21
33
1.97
15117--15208
23
3.9
24
82
4
125
22
21
21
33
1.97
15685--15723
19
2.0
19
85
5
51
30
7
15
46
1.74
16310--16377
3
21.7
3
79
8
73
60
5
2
30
1.35
16534--16961
191
2.2
193
84
2
558
33
16
16
33
1.92
17642--17704
3
20.3
3
77
6
63
57
1
6
34
1.34
17642--17703
22
2.9
21
78
7
70
56
1
6
35
1.35
18450--18516
17
4.1
17
79
12
68
20
10
5
62
1.48
18486--18513
14
2.0
14
100
0
56
14
14
0
71
1.15
38263--38297
16
2.1
17
94
5
63
31
8
25
34
1.86
39047--39079
15
2.1
16
88
5
50
51
15
24
9
1.72
44422--44448
2
13.5
2
100
0
54
51
0
0
48
1.00
45279--45311
16
2.1
16
100
0
66
24
0
30
45
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46181--46231
26
1.9
27
88
4
77
54
9
3
31
1.51
49081--49109
13
2.1
14
93
6
51
37
17
13
31
1.89
55527--55567
22
1.9
21
90
5
64
70
4
0
24
1.06
61315--61366
23
2.3
23
93
0
86
26
26
28
17
1.97
68546--68605
31
2.0
30
87
9
86
36
25
1
36
1.66
69716--69788
33
2.2
33
100
0
146
27
20
5
46
1.72
70054--70119
33
2.0
33
100
0
132
45
9
15
30
1.77
82405--82458
17
3.2
18
70
21
53
75
1
0
22
0.89
82397--82467
22
3.1
21
80
11
70
74
1
0
23
0.90
82397--82481
28
3.1
28
77
19
81
74
3
0
22
0.97
82407--82488
33
2.5
33
80
15
89
74
3
1
20
1.04
82582--82620
18
2.2
18
90
0
60
74
2
2
20
1.06
84012--84071
24
2.4
25
88
5
104
48
5
0
46
1.24
83954--84143
97
2.0
96
83
14
239
45
4
2
47
1.35
83981--84107
61
2.0
62
86
5
177
46
5
0
47
1.31
84039--84181
37
3.9
37
83
11
170
45
6
2
46
1.40

Tables:   1

The End!