Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007736.1 Hibiscus syriacus cultivar Beakdansim tig00109993_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70637

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3247--3304
20
2.6
22
84
10
66
31
20
22
25
1.98
4840--4884
23
2.0
23
81
0
54
20
24
24
31
1.98
8255--8287
17
1.9
17
100
0
66
27
6
48
18
1.71
8258--8296
17
2.3
17
86
8
53
33
7
43
15
1.75
9823--9864
21
2.0
21
95
0
75
30
4
40
23
1.75
12290--12352
32
2.0
32
82
11
78
15
6
14
63
1.49
13755--13840
39
2.2
37
76
10
84
47
8
10
33
1.67
17181--17227
23
2.1
23
92
4
78
61
10
8
19
1.53
17180--17228
22
2.2
21
86
10
71
59
12
8
20
1.58
22276--22408
33
4.2
32
80
14
152
43
33
9
14
1.76
22285--22407
62
2.0
60
90
6
194
43
33
8
15
1.76
22293--22419
29
4.1
31
83
10
152
42
33
8
14
1.77
22365--22436
32
2.2
32
80
4
83
44
29
9
16
1.80
22883--22923
16
2.6
16
100
0
82
68
4
4
21
1.28
49663--49704
21
2.0
21
100
0
84
28
9
14
47
1.75
54908--54935
2
14.0
2
100
0
56
50
0
0
50
1.00
55230--55445
31
6.9
30
73
9
155
30
16
19
33
1.94
55227--55447
63
3.5
63
85
3
286
30
16
19
33
1.94
56178--56220
12
3.8
12
87
6
63
18
16
18
46
1.84
56210--56261
21
2.6
20
85
14
72
23
15
11
50
1.76
60714--60747
13
2.4
14
90
9
52
44
5
11
38
1.65
62827--62888
30
2.1
30
90
0
97
33
16
24
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63243--63280
17
2.2
18
85
4
51
44
2
0
52
1.14
63316--63411
17
6.2
16
68
20
62
51
3
0
45
1.17
63316--63422
47
2.3
46
90
4
171
51
3
0
44
1.19
63324--63552
47
4.9
47
81
12
163
49
2
0
47
1.19
63374--63458
17
4.8
17
68
23
68
51
2
0
45
1.13
63445--63563
23
5.1
22
67
23
75
46
0
2
51
1.14
63570--63662
22
4.1
22
69
17
82
50
1
5
43
1.32
64022--64086
30
2.2
30
91
0
103
27
24
15
32
1.95
64028--64100
30
2.4
30
86
4
94
27
26
16
30
1.97
66664--66716
14
3.5
14
72
18
52
56
3
0
39
1.17
66663--66990
32
11.0
32
70
17
163
53
11
0
34
1.38
66737--67032
63
5.1
57
77
13
209
53
11
0
34
1.38
66821--66869
22
2.2
22
85
3
62
55
12
0
32
1.37
66737--66988
86
2.8
87
89
8
364
53
12
0
34
1.39
66759--67032
149
1.8
149
96
1
505
53
11
0
34
1.37
66841--67032
63
3.2
63
89
7
269
53
10
0
35
1.35
66968--67067
22
4.5
22
68
9
76
52
9
0
39
1.33
67012--67164
15
9.5
15
73
21
123
51
1
0
45
1.17
67012--67121
37
3.0
38
80
6
145
51
2
0
44
1.21
67084--67164
30
2.8
29
94
3
137
53
0
0
46
1.00

Tables:   1

The End!