genome.fa.s7737.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007737.1 Hibiscus syriacus cultivar Beakdansim tig00109996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120719

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3531--3762	36	6.4	36	87	3	306	35	24	20	19	1.95
3531--3778	108	2.3	108	86	4	356	37	23	20	18	1.94
3531--3796	36	7.4	35	83	5	273	36	23	19	20	1.95
4297--4528	36	6.4	36	87	3	306	35	24	20	19	1.95
4297--4544	108	2.3	108	86	4	356	37	23	20	18	1.94
4297--4562	36	7.4	35	83	5	273	36	23	19	20	1.95
4944--5497	51	10.8	51	87	3	711	32	19	24	23	1.97
4944--5497	101	5.4	102	87	2	745	32	19	24	23	1.97
5474--5807	53	6.2	53	82	7	340	30	14	27	26	1.95
5463--5806	108	3.2	106	79	9	346	30	15	27	27	1.96
15187--15434	108	2.3	108	85	4	347	37	22	20	18	1.94
15187--15418	36	6.4	36	87	3	297	36	24	20	19	1.95
15187--15452	36	7.4	35	83	5	264	36	22	19	20	1.95
15834--16390	51	10.8	51	88	2	738	33	19	24	22	1.97
16367--16701	53	6.2	53	83	6	358	30	14	27	27	1.95
16390--16654	107	2.5	108	88	1	383	29	14	28	27	1.95
16349--16707	160	2.2	160	79	10	419	30	16	26	26	1.97
28468--28539	24	3.2	22	72	20	60	31	0	4	63	1.13
28538--28624	29	3.0	29	81	8	81	45	14	3	35	1.62
28575--28630	29	1.9	29	89	7	87	44	17	3	33	1.66
28704--28743	21	1.9	21	89	0	62	25	12	22	40	1.89
29217--29285	26	2.6	26	82	11	79	56	5	4	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29225--29285	26	2.3	27	86	13	92	59	4	4	31	1.40
29768--29802	3	11.7	3	87	0	52	60	2	37	0	1.12
34559--34610	23	2.3	23	96	0	95	61	0	38	0	0.96
34663--34760	39	2.5	39	86	8	137	37	2	15	44	1.58
34689--34771	39	2.1	39	93	0	139	39	4	15	39	1.69
35128--35167	21	1.9	21	94	0	71	30	0	12	57	1.36
35385--35465	22	3.3	22	71	23	72	45	0	12	41	1.41
35346--35441	30	3.2	30	84	10	115	41	1	11	45	1.47
35392--35442	15	3.3	16	72	10	61	45	0	13	41	1.44
35418--35456	11	3.5	11	80	13	53	48	0	12	38	1.42
37776--37883	59	1.9	57	87	11	159	50	4	3	40	1.40
37962--38355	14	28.1	14	70	19	195	45	9	1	43	1.44
37949--38208	26	10.3	26	75	14	206	45	7	1	45	1.43
37949--38108	49	3.2	49	84	6	171	43	6	1	48	1.39
38030--38292	86	3.0	82	81	10	276	46	9	1	43	1.43
38084--38198	61	1.9	59	86	10	164	48	8	1	40	1.44
38243--38453	63	3.6	61	83	12	257	45	12	0	42	1.41
38322--38504	52	3.7	49	81	11	194	44	12	1	42	1.48
40956--40999	23	1.9	23	100	0	88	27	27	22	22	1.99
44437--44487	22	2.3	22	89	3	75	47	0	1	50	1.12
47078--47125	2	24.0	2	100	0	96	50	0	0	50	1.00
47555--47591	18	2.0	19	89	5	58	29	8	0	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47829--47854	2	13.0	2	100	0	52	50	0	0	50	1.00
48774--48810	12	2.8	14	88	12	60	62	0	0	37	0.96
49213--49255	22	1.9	23	81	13	54	44	2	13	39	1.57
53760--53849	45	2.0	45	84	4	117	37	22	16	23	1.93
54936--55054	30	3.8	31	75	7	107	32	19	16	31	1.94
57180--57226	24	1.9	25	82	4	60	59	2	21	17	1.47
58165--58385	64	3.5	64	79	6	189	33	19	18	28	1.96
65692--65737	22	2.0	22	83	4	56	43	2	2	52	1.25
67092--67121	2	15.0	2	100	0	60	50	0	0	50	1.00
73440--73522	36	2.3	36	83	4	105	28	10	10	49	1.72
76143--76180	13	2.8	14	84	8	51	34	2	5	57	1.35
76945--76986	21	2.0	21	85	0	57	50	7	7	35	1.57
77680--77726	2	23.5	2	95	0	85	46	0	2	51	1.13
81259--81424	60	2.8	60	87	2	210	31	19	5	43	1.74
83838--83872	18	2.1	17	89	10	54	45	8	11	34	1.71
84296--84779	182	2.7	174	82	6	571	44	17	16	21	1.86
84555--84633	40	2.0	40	87	5	115	50	13	12	22	1.76
87084--87129	20	2.4	19	92	7	83	36	21	26	15	1.93
94287--94804	257	2.0	256	88	5	782	38	8	11	41	1.73
95530--95719	65	2.9	65	93	1	319	32	23	13	31	1.93
100463--100496	4	8.5	4	93	0	59	47	23	2	26	1.66
102157--102221	32	2.0	32	93	0	112	23	13	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102168--102229	18	3.7	18	69	18	62	25	12	16	45	1.83
102913--102994	29	2.8	29	94	1	137	32	14	9	42	1.79
104289--104318	15	2.0	15	93	0	51	56	23	0	20	1.42
107683--107764	29	2.8	29	96	1	146	31	14	10	42	1.81
115789--115818	14	2.1	14	93	0	51	50	0	6	43	1.28
119544--119617	28	2.6	30	85	14	111	31	22	4	41	1.72
119544--119617	29	2.6	27	87	12	105	31	22	4	41	1.72

Tables:   1

The End!