Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007738.1 Hibiscus syriacus cultivar Beakdansim tig00109997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150216

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4564--4607
22
2.0
21
87
12
63
70
2
2
25
1.10
5118--5184
15
4.5
15
90
3
100
37
7
17
37
1.79
5529--5612
24
3.3
26
76
14
86
52
1
0
46
1.08
5521--5567
18
2.6
18
77
12
51
48
0
0
51
1.00
5568--5606
19
2.1
19
90
0
60
58
2
0
38
1.12
5639--5707
21
3.2
21
86
9
95
49
4
0
46
1.21
10129--10170
2
21.0
2
100
0
84
50
0
0
50
1.00
11457--11483
14
1.9
14
100
0
54
44
29
22
3
1.70
12577--12812
111
2.1
109
86
4
332
26
18
15
39
1.90
12577--12828
56
4.6
55
86
5
339
26
18
15
39
1.90
14166--14203
2
19.0
2
100
0
76
50
0
0
50
1.00
14961--15005
16
2.8
16
79
3
54
60
0
0
40
0.97
19775--19836
23
2.7
23
82
2
70
59
16
14
9
1.60
19969--20045
34
2.3
34
93
0
127
28
7
22
41
1.81
20046--20098
14
4.1
14
69
18
51
62
18
7
11
1.52
24156--24181
2
13.0
2
100
0
52
50
0
0
50
1.00
26613--26655
14
3.1
14
75
0
50
62
9
9
18
1.51
26787--26813
2
13.5
2
100
0
54
48
0
0
51
1.00
26859--26951
47
2.0
47
95
0
168
52
8
16
22
1.70
27713--27744
11
2.9
11
95
0
55
3
6
18
71
1.20
30946--30972
13
2.1
13
100
0
54
40
14
14
29
1.86
33882--33991
3
36.7
3
98
0
211
33
0
0
65
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35980--36004
7
3.6
7
100
0
50
68
0
0
32
0.90
46718--46765
11
4.7
10
80
12
53
85
0
14
0
0.60
46726--46764
9
4.6
9
81
12
55
89
0
10
0
0.48
46716--46764
25
1.9
26
95
4
91
85
0
14
0
0.59
46725--46765
16
2.7
15
92
7
66
87
0
12
0
0.53
47077--47121
16
2.8
16
83
10
56
28
8
6
55
1.56
47921--48461
83
6.5
83
96
0
956
27
12
21
38
1.89
49186--49743
113
5.0
113
87
4
817
36
16
18
28
1.92
50061--50116
3
18.7
3
96
0
103
33
1
0
64
1.04
74198--74450
124
2.0
124
100
0
506
38
7
20
33
1.80
75208--75424
54
4.0
54
82
2
247
24
23
20
30
1.99
75208--75424
108
2.0
108
84
1
283
24
23
20
30
1.99
91796--91847
20
2.6
20
96
0
95
30
25
15
28
1.96
92691--92737
3
15.7
3
95
0
85
31
0
2
65
1.04
101022--101067
18
2.6
18
96
0
83
28
39
15
17
1.90
111153--111209
28
2.0
28
89
0
87
29
14
22
33
1.93
122211--122253
21
2.0
21
100
0
86
32
4
4
58
1.39
122609--122705
36
2.7
36
95
0
176
45
5
16
32
1.69
128325--128385
21
3.2
21
65
26
62
31
4
16
47
1.68
128324--128394
36
2.0
35
97
2
133
30
5
16
46
1.70
129388--129430
21
2.0
21
100
0
86
32
4
4
58
1.39
135452--135503
28
1.9
26
84
7
68
51
17
3
26
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137460--137515
20
2.8
20
83
8
69
17
26
33
21
1.96
137478--137544
23
3.2
20
83
8
64
17
28
31
22
1.97
141552--141590
15
2.6
15
95
0
69
20
33
10
35
1.86
144043--144090
21
2.3
21
89
7
71
35
25
20
18
1.95
145384--145428
23
2.0
23
86
0
63
35
26
15
22
1.94
148259--148307
2
25.5
2
87
8
75
46
0
0
53
1.00
149832--149873
21
2.0
21
95
4
77
33
4
4
57
1.41

Tables:   1

The End!