Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007739.1 Hibiscus syriacus cultivar Beakdansim tig00109999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 642700
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 4
Found at i:8177 original size:8 final size:8
Alignment explanation
Indices: 8166--8199 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
8156 ATATTTTATA
8166 TATTTAAT
1 TATTTAAT
8174 TATTTAAT
1 TATTTAAT
*
8182 TATTTAAC
1 TATTTAAT
8190 TATTTAAT
1 TATTTAAT
8198 TA
1 TA
8200 CTTATCCGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (8 bp):
TATTTAAT
Found at i:15506 original size:35 final size:34
Alignment explanation
Indices: 15456--15525 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 34
15446 AAGAAATAAG
*
15456 TTTATAGCCCTGCTTTTAATTTAGTTTATTAATA
1 TTTATAGCCCTGCTTTTAATTTAGTATATTAATA
*
15490 TTTATAGGTCCTGCTTTTAATTTAGTATATTAATA
1 TTTATA-GCCCTGCTTTTAATTTAGTATATTAATA
15525 T
1 T
15526 AGTTTTTAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 6 0.18
35 27 0.82
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (34 bp):
TTTATAGCCCTGCTTTTAATTTAGTATATTAATA
Found at i:18513 original size:19 final size:19
Alignment explanation
Indices: 18489--18539 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
18479 ACCAACAAAA
18489 TCGCAATGCGATCGCTAAT
1 TCGCAATGCGATCGCTAAT
18508 TCGCAATGCGATCGCTAAT
1 TCGCAATGCGATCGCTAAT
*
18527 TCGCAACGCGATC
1 TCGCAATGCGATC
18540 TCCATTATCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (19 bp):
TCGCAATGCGATCGCTAAT
Found at i:18658 original size:20 final size:20
Alignment explanation
Indices: 18633--18685 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
18623 TAATACAAAA
*
18633 TCGCAACGAGATACTGACTT
1 TCGCAACGCGATACTGACTT
**
18653 TCGCAACGCGATTTTGACTT
1 TCGCAACGCGATACTGACTT
18673 TCGCAACGCGATA
1 TCGCAACGCGATA
18686 ATACATAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:18901 original size:22 final size:22
Alignment explanation
Indices: 18875--18916 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
18865 CTCTCTCACC
18875 CATCTCCGACGAAATCCGTCCA
1 CATCTCCGACGAAATCCGTCCA
* *
18897 CATCTCTGGCGAAATCCGTC
1 CATCTCCGACGAAATCCGTC
18917 TATCTCCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.38, G:0.17, T:0.21
Consensus pattern (22 bp):
CATCTCCGACGAAATCCGTCCA
Found at i:19218 original size:20 final size:20
Alignment explanation
Indices: 19181--19237 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
19171 GATTCTCTCG
**
19181 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
**
19201 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGTCATTTTCGCA
**
19221 TTGCGATTTTCATTTTC
1 TTGCGATAGTCATTTTC
19238 AGAAACTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:19428 original size:25 final size:24
Alignment explanation
Indices: 19374--19428 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
19364 TGTTTATTAT
* *
19374 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
19398 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
19424 TGTTT
1 TGTTT
19429 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:20575 original size:18 final size:18
Alignment explanation
Indices: 20554--20598 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
20544 TCCACTTCAG
*
20554 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
20572 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
20590 GAGCCATCA
1 GAGCCATCA
20599 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:21105 original size:20 final size:19
Alignment explanation
Indices: 21080--21145 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 19
21070 TAGTTTACTT
21080 TCGCAACACGAAAATGACTA
1 TCGCAACACG-AAATGACTA
* *
21100 TCGCAACGCGGAAATGGCTA
1 TCGCAACAC-GAAATGACTA
* **
21120 TCGCAATACGAAATGAAAA
1 TCGCAACACGAAATGACTA
21139 TCGCAAC
1 TCGCAAC
21146 GACAAAATCG
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
19 13 0.35
20 23 0.62
21 1 0.03
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (19 bp):
TCGCAACACGAAATGACTA
Found at i:21141 original size:19 final size:19
Alignment explanation
Indices: 21119--21211 Score: 71
Period size: 19 Copynumber: 5.4 Consensus size: 19
21109 GGAAATGGCT
21119 ATCGCAATACGAAATGAAA
1 ATCGCAATACGAAATGAAA
*
21138 ATCGC-A-ACG--A-CAAA
1 ATCGCAATACGAAATGAAA
*
21152 ATCGCAATGCGAAATGAAA
1 ATCGCAATACGAAATGAAA
*
21171 ATCGC-A-ACG--A-CAAA
1 ATCGCAATACGAAATGAAA
* *
21185 ACCGCAACACGAAATGAAA
1 ATCGCAATACGAAATGAAA
21204 ATCGCAAT
1 ATCGCAAT
21212 GCGATTTGTG
Statistics
Matches: 55, Mismatches: 9, Indels: 20
0.65 0.11 0.24
Matches are distributed among these distances:
14 15 0.27
15 4 0.07
16 5 0.09
17 5 0.09
18 4 0.07
19 22 0.40
ACGTcount: A:0.49, C:0.23, G:0.16, T:0.12
Consensus pattern (19 bp):
ATCGCAATACGAAATGAAA
Found at i:21154 original size:14 final size:14
Alignment explanation
Indices: 21135--21192 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 14
21125 ATACGAAATG
21135 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
21149 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
21168 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
21182 AAAACCGCAAC
1 AAAATCGCAAC
21193 ACGAAATGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.50, C:0.26, G:0.16, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:21165 original size:33 final size:33
Alignment explanation
Indices: 21119--21210 Score: 157
Period size: 33 Copynumber: 2.8 Consensus size: 33
21109 GGAAATGGCT
21119 ATCGCAATACGAAATGAAAATCGCAACGACAAA
1 ATCGCAATACGAAATGAAAATCGCAACGACAAA
*
21152 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATACGAAATGAAAATCGCAACGACAAA
* *
21185 ACCGCAACACGAAATGAAAATCGCAA
1 ATCGCAATACGAAATGAAAATCGCAA
21211 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.50, C:0.23, G:0.16, T:0.11
Consensus pattern (33 bp):
ATCGCAATACGAAATGAAAATCGCAACGACAAA
Found at i:21246 original size:14 final size:14
Alignment explanation
Indices: 21227--21317 Score: 74
Period size: 14 Copynumber: 5.9 Consensus size: 14
21217 TTGTGTTTCG
21227 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
21241 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
21257 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
21273 CGTTGCGATTTTCATTTT
1 CGTTGCGA--TT--TTGT
*
21291 GCATTGCGATTTTGT
1 -CGTTGCGATTTTGT
21306 CGTTGCGATTTT
1 CGTTGCGATTTT
21318 CATTTCGCAT
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
14 28 0.45
15 3 0.05
16 10 0.16
17 2 0.03
18 12 0.19
19 7 0.11
ACGTcount: A:0.11, C:0.16, G:0.23, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:21295 original size:33 final size:33
Alignment explanation
Indices: 21222--21333 Score: 199
Period size: 33 Copynumber: 3.4 Consensus size: 33
21212 GCGATTTGTG
*
21222 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
21254 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
21287 TTTTGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
21320 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
21334 AGCCATTTCC
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
32 26 0.34
33 50 0.66
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:21330 original size:19 final size:18
Alignment explanation
Indices: 21243--21333 Score: 81
Period size: 18 Copynumber: 5.4 Consensus size: 18
21233 GATTTTGTCG
21243 TTGCGATTTCATTTCGCA
1 TTGCGATTTCATTTCGCA
*
21261 TTGCGATTT--TGTCG--
1 TTGCGATTTCATTTCGCA
*
21275 TTGCGATTTTCATTTTGCA
1 TTGCGA-TTTCATTTCGCA
*
21294 TTGCGATTT--TGTCG--
1 TTGCGATTTCATTTCGCA
21308 TTGCGATTTTCATTTCGCA
1 TTGCGA-TTTCATTTCGCA
21327 TTGCGAT
1 TTGCGAT
21334 AGCCATTTCC
Statistics
Matches: 57, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
14 12 0.21
15 6 0.11
16 7 0.12
17 7 0.12
18 13 0.23
19 12 0.21
ACGTcount: A:0.13, C:0.18, G:0.21, T:0.48
Consensus pattern (18 bp):
TTGCGATTTCATTTCGCA
Found at i:21352 original size:20 final size:19
Alignment explanation
Indices: 21318--21373 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
21308 TTGCGATTTT
*
21318 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
21337 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
21357 CATTTTCGCGTCGCGAT
1 CA-TTTCGCGTTGCGAT
21374 TTTAAGTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 24 0.75
21 3 0.09
ACGTcount: A:0.16, C:0.27, G:0.23, T:0.34
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:23266 original size:14 final size:14
Alignment explanation
Indices: 23247--23282 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
23237 ATTGTTTAAT
23247 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
23261 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
23275 TGATTTGT
1 TGATTTGT
23283 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:23428 original size:14 final size:14
Alignment explanation
Indices: 23409--23462 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
23399 GAAACTGACT
23409 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
23423 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
*
23442 ATCGCAACAAGAAA
1 ATCGCAACGAGAAA
23456 ATCGCAA
1 ATCGCAA
23463 TGCGATTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 18 0.53
15 1 0.03
16 2 0.06
17 1 0.03
18 1 0.03
19 11 0.32
ACGTcount: A:0.50, C:0.20, G:0.19, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:23443 original size:19 final size:18
Alignment explanation
Indices: 23418--23467 Score: 63
Period size: 14 Copynumber: 2.9 Consensus size: 18
23408 TATCGCAACG
23418 AGAAAATCGCAATGCGAA
1 AGAAAATCGCAATGCGAA
23436 ATGAAAATCGCAA--C--A
1 A-GAAAATCGCAATGCGAA
23451 AGAAAATCGCAATGCGA
1 AGAAAATCGCAATGCGA
23468 TTTTCATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
14 11 0.41
15 2 0.07
16 1 0.04
17 1 0.04
18 1 0.04
19 11 0.41
ACGTcount: A:0.50, C:0.18, G:0.20, T:0.12
Consensus pattern (18 bp):
AGAAAATCGCAATGCGAA
Found at i:23455 original size:33 final size:34
Alignment explanation
Indices: 23389--23467 Score: 115
Period size: 33 Copynumber: 2.4 Consensus size: 34
23379 AAAACAGACT
* ** *
23389 ATCGCAATACGAAACTGACTATCGCAACGAGAAA
1 ATCGCAATGCGAAACTGAAAATCGCAACAAGAAA
23423 ATCGCAATGCGAAA-TGAAAATCGCAACAAGAAA
1 ATCGCAATGCGAAACTGAAAATCGCAACAAGAAA
23456 ATCGCAATGCGA
1 ATCGCAATGCGA
23468 TTTTCATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 28 0.68
34 13 0.32
ACGTcount: A:0.46, C:0.22, G:0.19, T:0.14
Consensus pattern (34 bp):
ATCGCAATGCGAAACTGAAAATCGCAACAAGAAA
Found at i:23511 original size:20 final size:20
Alignment explanation
Indices: 23486--23563 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
23476 TCGCATTGCG
*
23486 ATTTTCTAGTTGCGATAGCC
1 ATTTTCGAGTTGCGATAGCC
* ***
23506 ATTTTCGCGTTGCGATTTTTC
1 ATTTTCGAGTTGCGA-TAGCC
*
23527 A-TTTCGAATTGCGATAGCC
1 ATTTTCGAGTTGCGATAGCC
*
23546 ATTTTCGCGTTGCGATAG
1 ATTTTCGAGTTGCGATAG
23564 TCAAATGAAT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
19 3 0.07
20 38 0.86
21 3 0.07
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (20 bp):
ATTTTCGAGTTGCGATAGCC
Found at i:23519 original size:34 final size:36
Alignment explanation
Indices: 23474--23561 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 36
23464 GCGATTTTCA
* *
23474 TTTCGCATTGCGATTTTC-T-AGTTGCGATAGCCAT
1 TTTCGCGTTGCGATTTTCTTCAATTGCGATAGCCAT
23508 TTTCGCGTTGCGATTTTTCATTTCGAATTGCGATAGCCAT
1 TTTCGCGTTGCGA-TTTTC--TTC-AATTGCGATAGCCAT
23548 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
23562 AGTCAAATGA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
34 12 0.26
35 5 0.11
38 1 0.02
39 1 0.02
40 27 0.59
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (36 bp):
TTTCGCGTTGCGATTTTCTTCAATTGCGATAGCCAT
Found at i:23786 original size:20 final size:20
Alignment explanation
Indices: 23761--23810 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
23751 TTGAAGATGA
23761 TTGCGATTTTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
***
23781 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
23801 TTGCGATTTT
1 TTGCGATTTT
23811 GTATTATCTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCTCG
Found at i:23881 original size:20 final size:21
Alignment explanation
Indices: 23837--23888 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
23827 ATAGTTAGTA
*
23837 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
23858 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
23878 TCGCATTGCGA
1 TCGCATTGCGA
23889 ATTAGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:24700 original size:24 final size:24
Alignment explanation
Indices: 24673--24726 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
24663 ATATTCGAAA
* *
24673 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGATCAATACCCGGAC
* *
24697 TTTGATATTGATCAATACTCGGAT
1 TTTGATATTGATCAATACCCGGAC
24721 TTTGAT
1 TTTGAT
24727 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTGATCAATACCCGGAC
Found at i:24918 original size:12 final size:12
Alignment explanation
Indices: 24901--24925 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24891 ATATAATCCT
24901 GAAGAAGAAAAA
1 GAAGAAGAAAAA
24913 GAAGAAGAAAAA
1 GAAGAAGAAAAA
24925 G
1 G
24926 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:27238 original size:19 final size:19
Alignment explanation
Indices: 27216--27307 Score: 78
Period size: 19 Copynumber: 5.4 Consensus size: 19
27206 GGAAATTACT
27216 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
27235 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
27249 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
27268 ATCGCAA--C--ACT-AAT
1 ATCGCAATGCGAAATGAAA
*
27282 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
27301 ATCGCAA
1 ATCGCAA
27308 CATGAATTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 20
0.66 0.10 0.24
Matches are distributed among these distances:
14 18 0.33
15 3 0.05
16 3 0.05
17 3 0.05
18 3 0.05
19 25 0.45
ACGTcount: A:0.45, C:0.20, G:0.20, T:0.16
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:27316 original size:33 final size:33
Alignment explanation
Indices: 27217--27316 Score: 143
Period size: 33 Copynumber: 3.0 Consensus size: 33
27207 GAAATTACTA
*
27217 TCGCAATGCGAAATGAAAATCGCAACGA-GAGA-A
1 TCGCAATGCGAAATGAAAATCGCAAC-ATGA-ATT
27250 TCGCAATGCGAAATGAAAATCGCAACACT-AATT
1 TCGCAATGCGAAATGAAAATCGCAACA-TGAATT
27283 TCGCAATGCGAAATGAAAATCGCAACATGAATT
1 TCGCAATGCGAAATGAAAATCGCAACATGAATT
27316 T
1 T
27317 AATTTCGCGT
Statistics
Matches: 62, Mismatches: 1, Indels: 8
0.87 0.01 0.11
Matches are distributed among these distances:
32 3 0.05
33 59 0.95
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (33 bp):
TCGCAATGCGAAATGAAAATCGCAACATGAATT
Found at i:27340 original size:19 final size:19
Alignment explanation
Indices: 27318--27367 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
27308 CATGAATTTA
27318 ATTTCGCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTTTC
27337 ATTTCGCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTTTC
*
27356 ATTTCGCATTGC
1 ATTTCGCGTTGC
27368 AATAGTACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (19 bp):
ATTTCGCGTTGCGATTTTC
Found at i:27496 original size:14 final size:14
Alignment explanation
Indices: 27477--27513 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
27467 CATCAATTAA
27477 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
27491 ACAAATCACCTTTT
1 ACAAATCAACTTTT
27505 ACAAATCAA
1 ACAAATCAA
27514 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:28928 original size:42 final size:41
Alignment explanation
Indices: 28869--29074 Score: 164
Period size: 42 Copynumber: 4.9 Consensus size: 41
28859 GTGAATCGGG
* *
28869 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGA-CTCTTCAAGGATGACAGTGGC
* * *
28911 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * * *
28953 CTCTTCAACGATAGGAGTGGACTTTTGAGGGATGACAGTGGC
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGACAGTGGC
* * *
28995 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * *
29037 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAG
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGACAG
29075 GCGAGTCGGG
Statistics
Matches: 126, Mismatches: 30, Indels: 16
0.73 0.17 0.09
Matches are distributed among these distances:
41 9 0.07
42 106 0.84
43 11 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.22
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGACTCTTCAAGGATGACAGTGGC
Found at i:28935 original size:21 final size:21
Alignment explanation
Indices: 28869--28935 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
28859 GTGAATCGGG
*
28869 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
28889 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
28911 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
28932 CTCT
1 CTCT
28936 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:29010 original size:84 final size:84
Alignment explanation
Indices: 28899--29074 Score: 343
Period size: 84 Copynumber: 2.1 Consensus size: 84
28889 CCTCTTCAAC
28899 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
*
28964 TAGGAGTGGACTTTTGAGG
66 TAGGAGTGGACTCTTGAGG
28983 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
29048 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
29067 GATGACAG
1 GATGACAG
29075 GCGAGTCGGG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 91 1.00
ACGTcount: A:0.23, C:0.17, G:0.38, T:0.22
Consensus pattern (84 bp):
GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGA
TAGGAGTGGACTCTTGAGG
Found at i:29468 original size:91 final size:90
Alignment explanation
Indices: 29293--29477 Score: 300
Period size: 91 Copynumber: 2.0 Consensus size: 90
29283 ATTTCAAACT
*
29293 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGC
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTAGC
29358 AGAATTGGCAGCAACCGAATAAATTTAC
63 AGAATTGGCAGCAACCGAATAAATTTAC
29386 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAGCA
1 TTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCA
*
29450 GTATTGGCAGCAACCGAATAAATTTAC
64 GAATTGGCAGCAACCGAATAAATTTAC
29477 T
1 T
29478 AAGCAATCTA
Statistics
Matches: 88, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
91 42 0.48
93 19 0.22
95 27 0.31
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (90 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGA
ATTGGCAGCAACCGAATAAATTTAC
Found at i:31191 original size:20 final size:19
Alignment explanation
Indices: 31160--31309 Score: 150
Period size: 19 Copynumber: 8.1 Consensus size: 19
31150 TCTTTTGGTT
*
31160 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
31179 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
31199 GGAAATGACTATCGCAACGC
1 -GAAATGAAAATCGCAACGC
** *
31219 GAAATGACTATCGCGA--C
1 GAAATGAAAATCGCAACGC
*
31236 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
31252 GAAATGAAAATCGCAACCC
1 GAAATGAAAATCGCAACGC
31271 GAAATG-AAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
31289 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
31308 GA
1 GA
31310 TTTTGATTTC
Statistics
Matches: 111, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
14 8 0.07
15 1 0.01
16 2 0.02
17 2 0.02
18 18 0.16
19 48 0.43
20 30 0.27
21 2 0.02
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:31291 original size:37 final size:37
Alignment explanation
Indices: 31160--31304 Score: 154
Period size: 37 Copynumber: 3.9 Consensus size: 37
31150 TCTTTTGGTT
* * *
31160 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGCG
1 GAAATG-AAATCGCAACGCGA-AATGAAAATCGCAAC-CC
* ** *
31200 GAAATGACTATCGCAACGCGAAATGACTATCGCGA--C
1 GAAATGA-AATCGCAACGCGAAATGAAAATCGCAACCC
*
31236 GAGA-G-AATCGCAACGCGAAATGAAAATCGCAACCC
1 GAAATGAAATCGCAACGCGAAATGAAAATCGCAACCC
31271 GAAATGAAATCGCAACGCGAAATGAAAATCGCAA
1 GAAATGAAATCGCAACGCGAAATGAAAATCGCAA
31305 TGCGATTTTG
Statistics
Matches: 88, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
33 23 0.26
35 5 0.06
36 4 0.05
37 27 0.31
39 12 0.14
40 17 0.19
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.12
Consensus pattern (37 bp):
GAAATGAAATCGCAACGCGAAATGAAAATCGCAACCC
Found at i:31327 original size:19 final size:19
Alignment explanation
Indices: 31305--31352 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
31295 AAAATCGCAA
31305 TGCGATTTTGATTT-CGCGT
1 TGCGATTTT-ATTTCCGCGT
*
31324 TGCGATAGTTATTTCCGCGT
1 TGCGAT-TTTATTTCCGCGT
31344 TGCGATTTT
1 TGCGATTTT
31353 CATTCTCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.12, C:0.17, G:0.25, T:0.46
Consensus pattern (19 bp):
TGCGATTTTATTTCCGCGT
Found at i:31889 original size:20 final size:20
Alignment explanation
Indices: 31864--31916 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
31854 ACGCTATGTA
*
31864 AATCGCGTTGCGAAAGTTAG
1 AATCGCGTTGCGAAAGTCAG
31884 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
31904 TATCTCGTTGCGA
1 AATCGCGTTGCGA
31917 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:31950 original size:20 final size:20
Alignment explanation
Indices: 31925--31978 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
31915 GATTTTGTAT
31925 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
31945 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
31965 TATCGCATTGCGAT
1 TATCGCATTGCGAT
31979 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:31963 original size:61 final size:61
Alignment explanation
Indices: 31865--31981 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
31855 CGCTATGTAA
* * * * *
31865 ATCGCGTTGCGAAAGTTAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
* * *
31926 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT
31982 CCCAATTCGA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTGTATT
Found at i:31997 original size:61 final size:62
Alignment explanation
Indices: 31865--31999 Score: 143
Period size: 61 Copynumber: 2.2 Consensus size: 62
31855 CGCTATGTAA
* * * * * ** *
31865 ATCGC-GTTGCGAAAGTTAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCAGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
* *
31926 ATCGCA-TTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCAGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAAT
31988 -TCG-AGTTGCGAT
1 ATCGCAGTTGCGAT
32000 TTACTTATTC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
60 1 0.02
61 58 0.95
62 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (62 bp):
ATCGCAGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:32089 original size:21 final size:21
Alignment explanation
Indices: 32049--32089 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32039 ACTGTAGACC
**
32049 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
32070 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
32090 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:33964 original size:14 final size:14
Alignment explanation
Indices: 33947--33987 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
33937 TTTCTGTCTA
33947 TATGCAGAGATTAT
1 TATGCAGAGATTAT
33961 TATGCAGAGATTTAT
1 TATGCAGAGA-TTAT
*
33976 TA-GCAGGGATTA
1 TATGCAGAGATTA
33988 CTTCCCATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 16 0.64
15 6 0.24
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (14 bp):
TATGCAGAGATTAT
Found at i:34025 original size:13 final size:13
Alignment explanation
Indices: 34007--34032 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33997 ACAGACGCGC
34007 ATATGAAGACTGT
1 ATATGAAGACTGT
34020 ATATGAAGACTGT
1 ATATGAAGACTGT
34033 TCAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
ATATGAAGACTGT
Found at i:35137 original size:30 final size:28
Alignment explanation
Indices: 35070--35122 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
35060 TTAAAAAATA
*
35070 TATTTAAAAAATAACTTAAAATTATTAT
1 TATTTAAAAAATAACTTAAAATAATTAT
35098 TATTTAAAAAA-AACTTAAAATAATT
1 TATTTAAAAAATAACTTAAAATAATT
35123 TTTAAATTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.40
Consensus pattern (28 bp):
TATTTAAAAAATAACTTAAAATAATTAT
Found at i:36427 original size:33 final size:33
Alignment explanation
Indices: 36385--36455 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
36375 AATACTAACT
36385 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
* *
36418 TGAAAATCGCAACGAGAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
36451 TGAAA
1 TGAAA
36456 TCTAAGTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:36858 original size:20 final size:20
Alignment explanation
Indices: 36833--36984 Score: 207
Period size: 20 Copynumber: 7.6 Consensus size: 20
36823 CTTTAAAAAT
36833 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
36853 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
36873 CGCATTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
36893 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
36913 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
36933 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
36953 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
36973 CGCGTTGCGATT
1 CGCGTTGCGATT
36985 CTGGAAAATC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
20 117 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.34
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:37390 original size:2 final size:2
Alignment explanation
Indices: 37383--37416 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
37373 TATGTTGTTA
37383 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37417 TTAGATATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37947 original size:24 final size:23
Alignment explanation
Indices: 37896--37943 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
37886 TAATTTAATT
37896 AATAATTTTACTTTTTATTAAAA
1 AATAATTTTACTTTTTATTAAAA
37919 AATAATTTTACTTTTTATTAAAA
1 AATAATTTTACTTTTTATTAAAA
37942 AA
1 AA
37944 ATAAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (23 bp):
AATAATTTTACTTTTTATTAAAA
Found at i:38516 original size:23 final size:23
Alignment explanation
Indices: 38483--38551 Score: 104
Period size: 23 Copynumber: 3.0 Consensus size: 23
38473 CCAAACAACC
38483 GAAAATGTGTCATAAAGGCA-AA
1 GAAAATGTGTCATAAAGGCAGAA
38505 GAAAATTGTGTCATAAAGGCAGAA
1 GAAAA-TGTGTCATAAAGGCAGAA
* *
38529 GAATATGTGTCAAAAAGGCAGAA
1 GAAAATGTGTCATAAAGGCAGAA
38552 TTATTAAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
22 5 0.12
23 32 0.74
24 6 0.14
ACGTcount: A:0.48, C:0.09, G:0.25, T:0.19
Consensus pattern (23 bp):
GAAAATGTGTCATAAAGGCAGAA
Found at i:39597 original size:10 final size:10
Alignment explanation
Indices: 39582--39607 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
39572 AATATAAATA
39582 TAAAATACAT
1 TAAAATACAT
39592 TAAAATACAT
1 TAAAATACAT
39602 TAAAAT
1 TAAAAT
39608 TCAAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (10 bp):
TAAAATACAT
Found at i:43382 original size:22 final size:22
Alignment explanation
Indices: 43354--43426 Score: 101
Period size: 22 Copynumber: 3.3 Consensus size: 22
43344 AGTCGAGGGT
*
43354 TTCATAGGTCATTCGGGATATA
1 TTCATAGGTCATTCGGGACATA
*
43376 TTCATAGGTCCTTCGGGACATA
1 TTCATAGGTCATTCGGGACATA
**
43398 TTCATAGGTTTTTCGGGACATA
1 TTCATAGGTCATTCGGGACATA
43420 TTTCATA
1 -TTCATA
43427 TGCCACTCAG
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
22 40 0.87
23 6 0.13
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (22 bp):
TTCATAGGTCATTCGGGACATA
Found at i:48610 original size:22 final size:22
Alignment explanation
Indices: 48582--48654 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
48572 AGTCGAGGGT
*
48582 TTCATAGGTCCTTCGGGATATA
1 TTCATAGGTCCTTCGGGACATA
48604 TTCATAGGTCCTTCGGGACATA
1 TTCATAGGTCCTTCGGGACATA
*
48626 ATCATAGGTCCTTCGGGACATA
1 TTCATAGGTCCTTCGGGACATA
48648 TTTCATA
1 -TTCATA
48655 TGCCACTCAG
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
22 42 0.89
23 5 0.11
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (22 bp):
TTCATAGGTCCTTCGGGACATA
Found at i:53442 original size:16 final size:16
Alignment explanation
Indices: 53420--53477 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
53410 TAAATAAACA
*
53420 AACATAAACAAACACG
1 AACATAAACGAACACG
*
53436 GACATAAACGAACACG
1 AACATAAACGAACACG
*
53452 AACATAAATGAACACG
1 AACATAAACGAACACG
53468 AACATAAACG
1 AACATAAACG
53478 TTAGAGACCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.57, C:0.22, G:0.12, T:0.09
Consensus pattern (16 bp):
AACATAAACGAACACG
Found at i:54557 original size:24 final size:23
Alignment explanation
Indices: 54517--54561 Score: 81
Period size: 24 Copynumber: 1.9 Consensus size: 23
54507 ACATAAATGA
54517 ACGAACATAACGAACATAATCAG
1 ACGAACATAACGAACATAATCAG
54540 ACGAACATAAACGAACATAATC
1 ACGAACAT-AACGAACATAATC
54562 GAATGTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.53, C:0.22, G:0.11, T:0.13
Consensus pattern (23 bp):
ACGAACATAACGAACATAATCAG
Found at i:55269 original size:22 final size:22
Alignment explanation
Indices: 55233--55305 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
55223 AGTCGAGGGT
* *
55233 TTCATAGGTCTTTCGGGATATA
1 TTCATAGGTCATTCGGGACATA
* *
55255 TTCGTAGGTCATTCGGGACATT
1 TTCATAGGTCATTCGGGACATA
* *
55277 TTCATAGGTCCTTTGGGACATA
1 TTCATAGGTCATTCGGGACATA
55299 TTTCATA
1 -TTCATA
55306 TGCCACTCAG
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 36 0.86
23 6 0.14
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (22 bp):
TTCATAGGTCATTCGGGACATA
Found at i:57318 original size:24 final size:25
Alignment explanation
Indices: 57283--57337 Score: 96
Period size: 24 Copynumber: 2.3 Consensus size: 25
57273 TAATCATTAC
57283 ATATTT-GACTTTTGAATAAACAAT
1 ATATTTAGACTTTTGAATAAACAAT
57307 ATATTTAG-CTTTTGAATAAACAAT
1 ATATTTAGACTTTTGAATAAACAAT
57331 ATATTTA
1 ATATTTA
57338 ACACATAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 29 0.97
25 1 0.03
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (25 bp):
ATATTTAGACTTTTGAATAAACAAT
Found at i:58434 original size:225 final size:224
Alignment explanation
Indices: 57893--58499 Score: 912
Period size: 225 Copynumber: 2.7 Consensus size: 224
57883 TAACATAACC
* * * **
57893 GGTTAATTACT-GAAACATTATCAACTATAATAACAT-ACAGGTAGCGCTTATGTAACATAATAG
1 GGTTAATTACTGGAAACATTATCAACCATAATAACATAACAAGTAGCGCTTATTTAATGTAATAG
* * *
57956 ATAGCACCTTTTTAAAGCTGATAGGGCCTTAGAAATCTGACGATAAAAAAATAGGTTAATTACTT
66 -TAGCGCCTGTTTAAAGCTGATAGGGCCTTAGAAATCTGACGATAACAAAATAGGTTAATTACTT
58021 GATTTGTTATCAATATTATCAACATATTAGGTAACGCCTAAAATGTACCAAAGTTTAAGCTGATA
130 GATTTGTTATCAATATTATCAACATATTAGGTAACGCCTAAAATGTACCAAAGTTTAAGCTGATA
** **
58086 GAGCCTTAGAAATCTGATGATAACAAAATA
195 GAGCCTTAGAAATCCAACAATAACAAAATA
* *
58116 GTTTAATTATTGGAAACATTATCAACCATAATAACATAACAAGTAGCGCTTATTTAATGTAATAA
1 GGTTAATTACTGGAAACATTATCAACCATAATAACATAACAAGTAGCGCTTATTTAATGTAAT-A
* * ** * * *
58181 GTAGTGCATGTTTAAAGCTGGCAGGGCCTTAGAAATCCGACGATAACAAAATAAGTTAATTCCTT
65 GTAGCGCCTGTTTAAAGCTGATAGGGCCTTAGAAATCTGACGATAACAAAATAGGTTAATTACTT
* *
58246 GATTTGTTGTCAATATTATCAACATATTAGGTAGCGCCTAAAATGTTACCAAAGTTTAAGCTGAT
130 GATTTGTTATCAATATTATCAACATATTAGGTAACGCCTAAAATG-TACCAAAGTTTAAGCTGAT
*
58311 GGAGCCTTAGAAATCCAACAATAACAAAATA
194 AGAGCCTTAGAAATCCAACAATAACAAAATA
*
58342 GGTTAATTACTGGATACATTATCAACCATAATAACATAACAAGTAGCGCTTATTTAATGTAATAG
1 GGTTAATTACTGGAAACATTATCAACCATAATAACATAACAAGTAGCGCTTATTTAATGTAATAG
** * *
58407 TAGCGCCTGTCAAAAGCTTATAGGGCCTTAGAAATCTGACGATAACAAAATTGGTTAATTACTTG
66 TAGCGCCTGTTTAAAGCTGATAGGGCCTTAGAAATCTGACGATAACAAAATAGGTTAATTACTTG
58472 ATTTGTTATCAATATTATCAACATATTA
131 ATTTGTTATCAATATTATCAACATATTA
58500 CCGTGTAAAT
Statistics
Matches: 341, Mismatches: 39, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
223 9 0.03
224 24 0.07
225 201 0.59
226 107 0.31
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (224 bp):
GGTTAATTACTGGAAACATTATCAACCATAATAACATAACAAGTAGCGCTTATTTAATGTAATAG
TAGCGCCTGTTTAAAGCTGATAGGGCCTTAGAAATCTGACGATAACAAAATAGGTTAATTACTTG
ATTTGTTATCAATATTATCAACATATTAGGTAACGCCTAAAATGTACCAAAGTTTAAGCTGATAG
AGCCTTAGAAATCCAACAATAACAAAATA
Found at i:58733 original size:131 final size:129
Alignment explanation
Indices: 58497--58845 Score: 391
Period size: 131 Copynumber: 2.7 Consensus size: 129
58487 TATCAACATA
* * *
58497 TTACCGTGTAAATTGTTAATTTACATATTACTTTAAAGTAATAGGTTTCAAAATTATAAGAATCG
1 TTACCGTGTACATTGTTAATTTACCTATTACTTTAAAGTAATAGGTTTCAAAATTATAAGTATCG
* *
58562 ATACTTATATGACA--T-CATCGATACTTGTACATTCACACCTATTTTCATTATATCGGTAGAAA
66 ATACTT-TAT-ACATGTGTATCGATACTTGTACATTCACACCTATTATCATTATATCGGTAG-AA
58624 TGT
128 T-T
* * * *
58627 TTACCGTGTACATTGTTAATTTACCTATTGCTTTAAAAGTAATAGGTTTCAAAATTGTATGTATT
1 TTACCGTGTACATTGTTAATTTACCTATTACTTT-AAAGTAATAGGTTTCAAAATTATAAGTATC
** * * *
58692 GATACTTTATACATGTGTATCGATACTTG-ATGTTTATACCTATTATCATTATATCGGTAGACTT
65 GATACTTTATACATGTGTATCGATACTTGTACATTCACACCTATTATCATTATATCGGTAGAATT
* * * * * * * ** *
58756 TTACCATTTTCATTGTAAATTAACCTATTACCTTACAGTAATAGGTTTTGAAATTATAAGTACCG
1 TTACCGTGTACATTGTTAATTTACCTATTACTTTAAAGTAATAGGTTTCAAAATTATAAGTATCG
* *
58821 ATATTTTATATATGTGTATCGATAC
66 ATACTTTATACATGTGTATCGATAC
58846 ATTTTGCGTG
Statistics
Matches: 185, Mismatches: 30, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
128 47 0.25
129 31 0.17
130 36 0.19
131 60 0.32
132 11 0.06
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (129 bp):
TTACCGTGTACATTGTTAATTTACCTATTACTTTAAAGTAATAGGTTTCAAAATTATAAGTATCG
ATACTTTATACATGTGTATCGATACTTGTACATTCACACCTATTATCATTATATCGGTAGAATT
Found at i:59428 original size:199 final size:199
Alignment explanation
Indices: 58708--59576 Score: 1141
Period size: 199 Copynumber: 4.4 Consensus size: 199
58698 TTATACATGT
* ** * * * **
58708 GTATCGATACTTGATGTTTATACCTATTATCATTATATCGGTAGACTTTTACCATTTTCATTGTA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGTAGACTTTTACCGTTAACATTGTA
* * * * * ** * * *
58773 AATTAACCTATTACCTTACAGTAATAGGTTTTGAAATTATAAGTACCGATATTTTATATATGTGT
66 AATTTACCTATAACTTTAAAGTAATCGGTTTCAAAATTATAAGTATCGATACTTTATACATGTGT
*
58838 ATCGATACATTT-TGCGTGCAAATTGTTTGAGAAACATACTGGAATAAAAGTATCGATACCTATA
131 ATCGATAC-TTTGTGCGTGCAAATTG-TTGAGAAGCATACTGGAATAAAAGTATCGATACCTATA
* * *
58902 TAGACA
194 CAAAAA
* * * * * * *
58908 GTATCGATACTTGATATTTACTCCTATTACCATTAAACCGGTAGACTTTTACCGTTGACAATATA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGTAGACTTTTACCGTTAACATTGTA
* * *
58973 AATTTACCTATAACTTTAAAGTAATTGGTTTCAAAATTCTACGTATCGATACTTTATACATGTGT
66 AATTTACCTATAACTTTAAAGTAATCGGTTTCAAAATTATAAGTATCGATACTTTATACATGTGT
* * *
59038 ATTGATACTTTGTGCGTGCAAATTGTTGAGAAGCTTACTGGACTAAAAGTATCGATACCTATACA
131 ATCGATACTTTGTGCGTGCAAATTGTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATACA
59103 AAAA
196 AAAA
* * * * * *
59107 -TATCGATACTTTATATTTACGTCTATTATCATTAAATCGGTACACTTTTACCGCTGACATTGTA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGTAGACTTTTACCGTTAACATTGTA
* * *
59171 AATTTACCTATAACTTTAAAGTAATCGGTTTCAAAATTTTACA-TATTGATACTTTATACACGTG
66 AATTTACCTATAACTTTAAAGTAATCGGTTTCAAAATTATA-AGTATCGATACTTTATACATGTG
* * * * * *
59235 TATCAATACTTTGTGCGTGCAAATTATTGAGAAGCATATTGGACTAAATGTCTCGATACCTATAC
130 TATCGATACTTTGTGCGTGCAAATTGTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATAC
59300 AAAAA
195 AAAAA
* * *
59305 GTATCGATACTTTATGTTTACGCATATTATCATTAAACCGATAGACTTTTACCATTAACATTGTA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGTAGACTTTTACCGTTAACATTGTA
** * *
59370 AATTTACCTATAACTTTAAAGTAATCGGTTTTGAAATTATAAGTATCAATAATTTATACATGTGT
66 AATTTACCTATAACTTTAAAGTAATCGGTTTCAAAATTATAAGTATCGATACTTTATACATGTGT
*
59435 ATCGATACTTTGTGCGTGCAAATTGTTGAGAAGCATACTGGAATAAAAGTCTCGATACCTATACA
131 ATCGATACTTTGTGCGTGCAAATTGTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATACA
59500 AAAA
196 AAAA
* * *
59504 GTATCAATACTTTATGTTTACGCCTATTATCATTAAACCGATAGACTTTTACCGTTAGCATTGTA
1 GTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGTAGACTTTTACCGTTAACATTGTA
59569 AATTTACC
66 AATTTACC
59577 AGTTAATTTA
Statistics
Matches: 589, Mismatches: 76, Indels: 9
0.87 0.11 0.01
Matches are distributed among these distances:
198 177 0.30
199 285 0.48
200 127 0.22
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (199 bp):
GTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGTAGACTTTTACCGTTAACATTGTA
AATTTACCTATAACTTTAAAGTAATCGGTTTCAAAATTATAAGTATCGATACTTTATACATGTGT
ATCGATACTTTGTGCGTGCAAATTGTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATACA
AAAA
Found at i:59444 original size:397 final size:398
Alignment explanation
Indices: 58730--59576 Score: 1135
Period size: 397 Copynumber: 2.1 Consensus size: 398
58720 GATGTTTATA
* * * * * *
58730 CCTATTATCATTATATCGGTAGACTTTTACCATTTTCATTGTAAATTAACCTATTACCTTACAGT
1 CCTATTATCATTAAATCGGTAGACTTTTACC-GTTACATTGTAAATTTACCTATAACCTTAAAGT
** * * * *
58795 AATAGGTTTTGAAATTATAAGTACCGATATTTTATATATGTGTATCGATACATTTTGCGTGCAAA
65 AATAGGTTTCAAAATTATAAGTACCGATACTTTATACACGTGTATCAATACATTTTGCGTGCAAA
* * * *
58860 TTGTTTGAGAAACATACTGGAATAAAAGTATCGATACCTATATAGACAGTATCGATACTTGATAT
130 TTGATTGAGAAACATACTGGAATAAAAGTATCGATACCTATACAAAAAGTATCGATACTTGATAT
* * * * *
58925 TTACTCCTATTACCATTAAACCGGTAGACTTTTACCGTTGACAATATAAATTTACCTATAACTTT
195 TTACGCATATTACCATTAAACCGATAGACTTTTACCATTAACAATATAAATTTACCTATAACTTT
* * * * * *
58990 AAAGTAATTGGTTTCAAAATTCTACGTATCGATACTTTATACATGTGTATTGATACTTTGTGCGT
260 AAAGTAATCGGTTTCAAAATTATAAGTATCAATAATTTATACATGTGTATCGATACTTTGTGCGT
* * *
59055 GCAAATTGTTGAGAAGCTTACTGGACTAAAAGTATCGATACCTATACAAAAA-TATCGATACTTT
325 GCAAATTGTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATACAAAAAGTATCAATACTTT
59119 ATATTTACG
390 ATATTTACG
* * * *
59128 TCTATTATCATTAAATCGGTACACTTTTACCGCTGACATTGTAAATTTACCTATAACTTTAAAGT
1 CCTATTATCATTAAATCGGTAGACTTTTACCG-TTACATTGTAAATTTACCTATAACCTTAAAGT
* * **
59193 AATCGGTTTCAAAATTTTACA-TATTGATACTTTATACACGTGTATCAATAC-TTTGTGCGTGCA
65 AATAGGTTTCAAAATTATA-AGTACCGATACTTTATACACGTGTATCAATACATTT-TGCGTGCA
* * * * * *
59256 AATT-ATTGAGAAGCATATTGGACTAAATGTCTCGATACCTATACAAAAAGTATCGATACTTTAT
128 AATTGATTGAGAAACATACTGGAATAAAAGTATCGATACCTATACAAAAAGTATCGATACTTGAT
* * * *
59320 GTTTACGCATATTATCATTAAACCGATAGACTTTTACCATTAACATTGTAAATTTACCTATAACT
193 ATTTACGCATATTACCATTAAACCGATAGACTTTTACCATTAACAATATAAATTTACCTATAACT
**
59385 TTAAAGTAATCGGTTTTGAAATTATAAGTATCAATAATTTATACATGTGTATCGATACTTTGTGC
258 TTAAAGTAATCGGTTTCAAAATTATAAGTATCAATAATTTATACATGTGTATCGATACTTTGTGC
*
59450 GTGCAAATTGTTGAGAAGCATACTGGAATAAAAGTCTCGATACCTATACAAAAAGTATCAATACT
323 GTGCAAATTGTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATACAAAAAGTATCAATACT
*
59515 TTATGTTTACG
388 TTATATTTACG
* *
59526 CCTATTATCATTAAACCGATAGACTTTTACCGTTAGCATTGTAAATTTACC
1 CCTATTATCATTAAATCGGTAGACTTTTACCGTTA-CATTGTAAATTTACC
59577 AGTTAATTTA
Statistics
Matches: 387, Mismatches: 57, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
397 219 0.57
398 167 0.43
399 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (398 bp):
CCTATTATCATTAAATCGGTAGACTTTTACCGTTACATTGTAAATTTACCTATAACCTTAAAGTA
ATAGGTTTCAAAATTATAAGTACCGATACTTTATACACGTGTATCAATACATTTTGCGTGCAAAT
TGATTGAGAAACATACTGGAATAAAAGTATCGATACCTATACAAAAAGTATCGATACTTGATATT
TACGCATATTACCATTAAACCGATAGACTTTTACCATTAACAATATAAATTTACCTATAACTTTA
AAGTAATCGGTTTCAAAATTATAAGTATCAATAATTTATACATGTGTATCGATACTTTGTGCGTG
CAAATTGTTGAGAAGCATACTGGAATAAAAGTATCGATACCTATACAAAAAGTATCAATACTTTA
TATTTACG
Found at i:61152 original size:20 final size:20
Alignment explanation
Indices: 61127--61169 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
61117 TCTAAGAGCT
*
61127 CATTTAGGACCATGTAGATG
1 CATTTAGGACCATATAGATG
* *
61147 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCATATAGATG
61167 CAT
1 CAT
61170 GTGGTGGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:73618 original size:15 final size:15
Alignment explanation
Indices: 73594--73623 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73584 TAAACCAAAC
73594 ATACAAAACAATGTT
1 ATACAAAACAATGTT
*
73609 ATACATAACAATGTT
1 ATACAAAACAATGTT
73624 CTAATTGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (15 bp):
ATACAAAACAATGTT
Found at i:76286 original size:15 final size:15
Alignment explanation
Indices: 76266--76323 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
76256 TCACATTAGT
76266 ACATTTTCACATATA
1 ACATTTTCACATATA
* *
76281 ACATTTTCATATAAA
1 ACATTTTCACATATA
*
76296 ACATATTCACATATA
1 ACATTTTCACATATA
76311 ACATTTTCCACAT
1 ACATTTT-CACAT
76324 TCAGATAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 31 0.86
16 5 0.14
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (15 bp):
ACATTTTCACATATA
Found at i:81086 original size:20 final size:19
Alignment explanation
Indices: 81057--81130 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
81047 CTATATATCG
*
81057 GTTTTCTCAAATTGAAACCA
1 GTTTTGTCAAATTGAAA-CA
** *
81077 GTTTTGTCAAATTTGTTATA
1 GTTTTGTCAAA-TTGAAACA
81097 TGTTTTGTCAAATTGAAAACA
1 -GTTTTGTCAAATTG-AAACA
*
81118 GATTTGTCAAATT
1 GTTTTGTCAAATT
81131 TCAACCTGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
20 26 0.60
21 17 0.40
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (19 bp):
GTTTTGTCAAATTGAAACA
Found at i:83002 original size:4 final size:4
Alignment explanation
Indices: 82985--83697 Score: 1403
Period size: 4 Copynumber: 178.8 Consensus size: 4
82975 ATTGCAAACA
*
82985 GATG GATA GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83033 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83081 GATG GATG GATG GATG G--G GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83127 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83175 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83223 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83271 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83319 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83367 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83415 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83463 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83511 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83559 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83607 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
83655 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GAT
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GAT
83698 AAAATCCAGT
Statistics
Matches: 705, Mismatches: 2, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
2 2 0.00
4 703 1.00
ACGTcount: A:0.25, C:0.00, G:0.50, T:0.25
Consensus pattern (4 bp):
GATG
Found at i:83859 original size:21 final size:21
Alignment explanation
Indices: 83833--83883 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
83823 TTCGACTCGG
83833 ATCAGGTCGGGTCCAGGTCAA
1 ATCAGGTCGGGTCCAGGTCAA
* *
83854 ATCAGGTCAGGTCCAGGTCAT
1 ATCAGGTCGGGTCCAGGTCAA
*
83875 ATTAGGTCG
1 ATCAGGTCG
83884 AGTCATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (21 bp):
ATCAGGTCGGGTCCAGGTCAA
Found at i:84640 original size:15 final size:15
Alignment explanation
Indices: 84620--84818 Score: 79
Period size: 15 Copynumber: 14.0 Consensus size: 15
84610 AATATAAGTT
84620 TATATATAAACTATA
1 TATATATAAACTATA
* *
84635 TATATA-ATA-TATT
1 TATATATAAACTATA
*
84648 TATATTATAAATTATA
1 TATA-TATAAACTATA
* * **
84664 TA-ATTATTATC-AGC
1 TATA-TATAAACTATA
* *
84678 TATATATAAATTATG
1 TATATATAAACTATA
* *
84693 TTTATATGAAC--TA
1 TATATATAAACTATA
84706 TATATATAAACTATA
1 TATATATAAACTATA
*
84721 TATGTATAAACTATA
1 TATATATAAACTATA
* *
84736 AATGTATAAAC--TA
1 TATATATAAACTATA
84749 TA-A-A-AAA-TATA
1 TATATATAAACTATA
*
84760 TAGTTTATAAACTATA
1 TA-TATATAAACTATA
* *
84776 GTTTATATTAA-TATA
1 -TATATATAAACTATA
*
84791 GTATATGT--A-TATA
1 -TATATATAAACTATA
84804 TATATATAAACTATA
1 TATATATAAACTATA
84819 AAAAAATTAA
Statistics
Matches: 135, Mismatches: 31, Indels: 36
0.67 0.15 0.18
Matches are distributed among these distances:
10 3 0.02
11 5 0.04
12 6 0.04
13 25 0.19
14 13 0.10
15 67 0.50
16 15 0.11
17 1 0.01
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (15 bp):
TATATATAAACTATA
Found at i:84732 original size:28 final size:28
Alignment explanation
Indices: 84620--84818 Score: 85
Period size: 29 Copynumber: 7.1 Consensus size: 28
84610 AATATAAGTT
* *
84620 TATATATAAACTATATATATAATATA-TT
1 TATATATAAACTATATATAT-ATAAACTA
* * *
84648 TATATTATAAATTATATA-ATTATTATC-A
1 TATA-TATAAACTATATATA-TATAAACTA
* * * *
84676 GCTATATATAAATTATGTTTATATGAACTA
1 --TATATATAAACTATATATATATAAACTA
*
84706 TATATATAAACTATATATGTATAAACTA
1 TATATATAAACTATATATATATAAACTA
*
84734 TAAATGTATAAACTATA-A-A-A-AATA-TA
1 T--ATATATAAACTATATATATATAA-ACTA
* * *
84760 TAGTTTATAAACTATAGTTTATATTAA-TA
1 TA-TATATAAACTATA-TATATATAAACTA
**
84789 TAGTATATGTA-TATATATATATAAACTA
1 TA-TATATAAACTATATATATATAAACTA
84817 TA
1 TA
84819 AAAAAATTAA
Statistics
Matches: 130, Mismatches: 24, Indels: 34
0.69 0.13 0.18
Matches are distributed among these distances:
24 1 0.01
25 12 0.09
26 5 0.04
27 10 0.08
28 40 0.31
29 42 0.32
30 20 0.15
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (28 bp):
TATATATAAACTATATATATATAAACTA
Found at i:84856 original size:2 final size:2
Alignment explanation
Indices: 84849--84888 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
84839 AAAATAAATG
84849 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84889 TCACATGAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85712 original size:2 final size:2
Alignment explanation
Indices: 85707--85833 Score: 111
Period size: 2 Copynumber: 64.5 Consensus size: 2
85697 TGTGTGTGTG
*
85707 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
85749 TA TA TG TA TG TA TA TA TA TA TA TG TA TA AA CTA TA TA AA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
* * *
85791 TA TA GTT TA TA AA T- TA TA -A TT TA TA T- TA -A TA TA GTA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
85831 TA T
1 TA T
85834 GTATGTATAA
Statistics
Matches: 99, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
1 5 0.05
2 90 0.91
3 4 0.04
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:86048 original size:10 final size:10
Alignment explanation
Indices: 86022--86065 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
86012 CATGTATATT
*
86022 ATATATAAAC
1 ATATATATAC
*
86032 TATATATTTAC
1 -ATATATATAC
86043 ATATATATAC
1 ATATATATAC
*
86053 CTATATATAC
1 ATATATATAC
86063 ATA
1 ATA
86066 AACAATATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
10 20 0.71
11 8 0.29
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (10 bp):
ATATATATAC
Found at i:86168 original size:14 final size:14
Alignment explanation
Indices: 86149--86227 Score: 79
Period size: 14 Copynumber: 5.6 Consensus size: 14
86139 TAGTTTATAA
*
86149 AAACCCTAAATTAT
1 AAACCCTAAATCAT
*
86163 AAACCCTAAATCCT
1 AAACCCTAAATCAT
** *
86177 AAACTTTAAACCAT
1 AAACCCTAAATCAT
*
86191 AAACACTAAA-CATT
1 AAACCCTAAATCA-T
*
86205 AAACCCTAAATCAC
1 AAACCCTAAATCAT
86219 AAACCCTAA
1 AAACCCTAA
86228 TATAAATAGA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
13 2 0.04
14 49 0.92
15 2 0.04
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.22
Consensus pattern (14 bp):
AAACCCTAAATCAT
Found at i:86179 original size:21 final size:21
Alignment explanation
Indices: 86153--86216 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
86143 TTATAAAAAC
86153 CCTAAATTATAAACCCTAAAT
1 CCTAAATTATAAACCCTAAAT
*
86174 CCTAAACTT-TAAACCATAAA-
1 CCTAAA-TTATAAACCCTAAAT
*
86194 CACTAAA-CATTAAACCCTAAAT
1 C-CTAAATTA-TAAACCCTAAAT
86216 C
1 C
86217 ACAAACCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
20 1 0.03
21 31 0.89
22 3 0.09
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (21 bp):
CCTAAATTATAAACCCTAAAT
Found at i:86222 original size:21 final size:22
Alignment explanation
Indices: 86162--86222 Score: 83
Period size: 21 Copynumber: 2.9 Consensus size: 22
86152 CCCTAAATTA
*
86162 TAAACCCTAAATC-CTAAACTT
1 TAAACCCTAAATCACTAAACAT
*
86183 TAAACCATAAA-CACTAAACAT
1 TAAACCCTAAATCACTAAACAT
86204 TAAACCCTAAATCAC-AAAC
1 TAAACCCTAAATCACTAAAC
86223 CCTAATATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.89
22 3 0.09
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (22 bp):
TAAACCCTAAATCACTAAACAT
Found at i:86952 original size:21 final size:22
Alignment explanation
Indices: 86927--86986 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 22
86917 TAGTTTATAG
**
86927 AAACCCTAAATC-CTAAATTTT
1 AAACCCTAAATCACTAAACATT
*
86948 AAACCATAAA-CACTAAACATT
1 AAACCCTAAATCACTAAACATT
*
86969 AAACCCAAAATCAC-AAAC
1 AAACCCTAAATCACTAAAC
86987 TCTAATGTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 28 0.88
22 3 0.09
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (22 bp):
AAACCCTAAATCACTAAACATT
Found at i:87318 original size:9 final size:9
Alignment explanation
Indices: 87306--87335 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
87296 TACATTTAAA
87306 TAATTTTAT
1 TAATTTTAT
87315 TAATTTTAT
1 TAATTTTAT
87324 TAATTTTAT
1 TAATTTTAT
87333 TAA
1 TAA
87336 ATAATTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TAATTTTAT
Found at i:87445 original size:2 final size:2
Alignment explanation
Indices: 87341--87427 Score: 52
Period size: 2 Copynumber: 43.0 Consensus size: 2
87331 ATTAAATAAT
* * * * *
87341 TA TA TA TA -A TA TG TA TG TA TA AA TCA TG TA TA GTA TA TA TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA -TA TA TA TA TA
* ** *
87384 CTA TA TA TA TA TG TA TA TA TA GC T- TA TA TA TA TA TA TC TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87426 TA
1 TA
87428 AAGTAAATTA
Statistics
Matches: 63, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
1 2 0.03
2 56 0.89
3 5 0.08
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.45
Consensus pattern (2 bp):
TA
Found at i:87512 original size:7 final size:7
Alignment explanation
Indices: 87502--87574 Score: 56
Period size: 7 Copynumber: 10.4 Consensus size: 7
87492 TAGTTTATAG
87502 AAACCCT
1 AAACCCT
*
87509 AAACCCA
1 AAACCCT
*
87516 AAAACCT
1 AAACCCT
*
87523 AAACACT
1 AAACCCT
*
87530 AAACCAT
1 AAACCCT
**
87537 AAACTTT
1 AAACCCT
*
87544 AAACCAT
1 AAACCCT
*
87551 AAACACT
1 AAACCCT
**
87558 AAACATT
1 AAACCCT
87565 AAACCCT
1 AAACCCT
87572 AAA
1 AAA
87575 TCACAAACTC
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
7 50 1.00
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:87539 original size:14 final size:14
Alignment explanation
Indices: 87517--87574 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 14
87507 CTAAACCCAA
87517 AAACC-TAAACACT
1 AAACCATAAACACT
**
87530 AAACCATAAACTTT
1 AAACCATAAACACT
87544 AAACCATAAACACT
1 AAACCATAAACACT
*
87558 AAA-CATTAAACCCT
1 AAACCA-TAAACACT
87572 AAA
1 AAA
87575 TCACAAACTC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
13 7 0.18
14 31 0.82
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (14 bp):
AAACCATAAACACT
Found at i:87582 original size:21 final size:20
Alignment explanation
Indices: 87502--87582 Score: 63
Period size: 21 Copynumber: 3.9 Consensus size: 20
87492 TAGTTTATAG
* * *
87502 AAACCCTAAACCCAAAAACCT
1 AAACCCTAAACACAAACA-TT
* * *
87523 AAACACTAAACCATAAACTTT
1 AAACCCTAAA-CACAAACATT
*
87544 AAACCATAAACACTAAACATT
1 AAACCCTAAACAC-AAACATT
87565 AAACCCTAAATCACAAAC
1 AAACCCTAAA-CACAAAC
87583 TCTAATATAA
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
20 2 0.04
21 37 0.80
22 7 0.15
ACGTcount: A:0.54, C:0.30, G:0.00, T:0.16
Consensus pattern (20 bp):
AAACCCTAAACACAAACATT
Found at i:87684 original size:20 final size:20
Alignment explanation
Indices: 87659--87704 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
87649 GCCTATGTAA
87659 ACTAATGTAAATGGAATAAC
1 ACTAATGTAAATGGAATAAC
*
87679 ACTAATGTAAATGGACTAAC
1 ACTAATGTAAATGGAATAAC
87699 ACTAAT
1 ACTAAT
87705 ACAAATTGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (20 bp):
ACTAATGTAAATGGAATAAC
Found at i:87710 original size:20 final size:20
Alignment explanation
Indices: 87667--87710 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
87657 AAACTAATGT
**
87667 AAATGGAATAACACTAATGT
1 AAATGGAATAACACTAATAC
*
87687 AAATGGACTAACACTAATAC
1 AAATGGAATAACACTAATAC
87707 AAAT
1 AAAT
87711 TGACATATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.14, G:0.11, T:0.23
Consensus pattern (20 bp):
AAATGGAATAACACTAATAC
Found at i:88091 original size:16 final size:16
Alignment explanation
Indices: 88063--88105 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
88053 TTGGTCTATA
*
88063 GTAATATAT-AAGTTAG
1 GTAA-ATATCAAGTCAG
88079 GTAAATATCAAGTCAG
1 GTAAATATCAAGTCAG
88095 GTAAATATCAA
1 GTAAATATCAA
88106 ACAAGTCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.30
Consensus pattern (16 bp):
GTAAATATCAAGTCAG
Found at i:95168 original size:17 final size:17
Alignment explanation
Indices: 95148--95218 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 17
95138 TTTTTAGTTA
* *
95148 TTTTATTTTTAATAT-G
1 TTTTATATTTAATATAT
95164 TTTT-TATTTAAT-T-T
1 TTTTATATTTAATATAT
95178 TTTTAAATATTTAA-ATAT
1 TTTT--ATATTTAATATAT
*
95196 TTTTATATTTAAAATAT
1 TTTTATATTTAATATAT
95213 TTTTAT
1 TTTTAT
95219 TTTTTCTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
14 5 0.11
15 7 0.15
16 12 0.26
17 18 0.38
18 5 0.11
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (17 bp):
TTTTATATTTAATATAT
Found at i:95181 original size:25 final size:26
Alignment explanation
Indices: 95138--95187 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
95128 TATGTTTACT
* *
95138 TTTTTAGTTATTTTATTTTTAATATG
1 TTTTTAGTTAATTTATTTTAAATATG
*
95164 TTTTTATTTAATTT-TTTTAAATAT
1 TTTTTAGTTAATTTATTTTAAATAT
95188 TTAAATATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (26 bp):
TTTTTAGTTAATTTATTTTAAATATG
Found at i:95223 original size:25 final size:24
Alignment explanation
Indices: 95138--95223 Score: 59
Period size: 25 Copynumber: 3.5 Consensus size: 24
95128 TATGTTTACT
* * *
95138 TTTTTAGTTATTTTATTTTTAATATG
1 TTTTTA-TTTTTTTA-TTTTAAAATA
*
95164 TTTTTATTTAATTT-TTTT-AAATA
1 TTTTTATTT-TTTTATTTTAAAATA
** *
95187 TTTAAATATTTTTATATTTAAAATA
1 TTTTTATTTTTTTAT-TTTAAAATA
95212 TTTTTATTTTTT
1 TTTTTATTTTTT
95224 CTAAAAAATT
Statistics
Matches: 45, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
22 3 0.07
23 10 0.22
24 7 0.16
25 16 0.36
26 9 0.20
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTTTATTTTTTTATTTTAAAATA
Found at i:95641 original size:18 final size:20
Alignment explanation
Indices: 95611--95647 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
95601 TGTTTTAATG
95611 TTCAAATTACTTA-TAATTT
1 TTCAAATTACTTATTAATTT
95630 TTCAAATT-CTTATTAATT
1 TTCAAATTACTTATTAATT
95648 AGTCACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (20 bp):
TTCAAATTACTTATTAATTT
Found at i:97225 original size:29 final size:29
Alignment explanation
Indices: 97190--97259 Score: 122
Period size: 29 Copynumber: 2.4 Consensus size: 29
97180 GAGCCAACAA
*
97190 GTCGCCATGCACTCCCAGCGTCCTACCAG
1 GTCGCCATGCACTCCCAGCGTACTACCAG
*
97219 GTCGCCATGCACTCCCAGCGTACTACTAG
1 GTCGCCATGCACTCCCAGCGTACTACCAG
97248 GTCGCCATGCAC
1 GTCGCCATGCAC
97260 GCCTGGCGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.19, C:0.41, G:0.21, T:0.19
Consensus pattern (29 bp):
GTCGCCATGCACTCCCAGCGTACTACCAG
Found at i:97625 original size:23 final size:23
Alignment explanation
Indices: 97581--97625 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97571 GGGTTGTAAG
* *
97581 AATGAAGAAAGAAAAGTGAAGGA
1 AATGAAGAAAAAAAAGTAAAGGA
97604 AATGAAGAAAAAGAAAG-AAAGG
1 AATGAAGAAAAA-AAAGTAAAGG
97626 TAACCGAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.64, C:0.00, G:0.29, T:0.07
Consensus pattern (23 bp):
AATGAAGAAAAAAAAGTAAAGGA
Found at i:100552 original size:35 final size:34
Alignment explanation
Indices: 100506--100579 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 34
100496 TAAATAATTT
*
100506 AATCATCACTAAATTATTAAT-A-ATCATTATTATCA
1 AATCATCACTAAA-TA-AAATCATATCATTATTAT-A
*
100541 AATCATTACTAAATAAAATCATATCATTATTATA
1 AATCATCACTAAATAAAATCATATCATTATTATA
100575 AATCA
1 AATCA
100580 AACAAGTGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
33 3 0.09
34 9 0.26
35 23 0.66
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (34 bp):
AATCATCACTAAATAAAATCATATCATTATTATA
Found at i:100848 original size:14 final size:14
Alignment explanation
Indices: 100821--100884 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
100811 AATAATTTTT
* *
100821 AAATCATAAGTATA
1 AAATCATTATTATA
100835 AAATCATTATTATA
1 AAATCATTATTATA
**
100849 ATTTCATTATTACT-
1 AAATCATTATTA-TA
*
100863 -AATCATTATTATC
1 AAATCATTATTATA
*
100876 AAATGATTA
1 AAATCATTA
100885 AATATAAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
12 1 0.03
13 9 0.22
14 29 0.73
15 1 0.03
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.42
Consensus pattern (14 bp):
AAATCATTATTATA
Found at i:100944 original size:25 final size:25
Alignment explanation
Indices: 100915--100990 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
100905 TTTTACTAAT
100915 CATTACTAAATTATTAATATCAAAC
1 CATTACTAAATTATTAATATCAAAC
*
100940 CA-T--TAAA-TATTAATAAT-AAAT
1 CATTACTAAATTATTAAT-ATCAAAC
*
100961 CATTTCTAAATTATTAATATCAAAC
1 CATTACTAAATTATTAATATCAAAC
100986 CATTA
1 CATTA
100991 AATATTAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
21 12 0.29
22 7 0.17
24 7 0.17
25 16 0.38
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (25 bp):
CATTACTAAATTATTAATATCAAAC
Found at i:100951 original size:24 final size:24
Alignment explanation
Indices: 100924--101003 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
100914 TCATTACTAA
*
100924 ATTATTAATATCAAACCATTAAAT
1 ATTAATAATATCAAACCATTAAAT
* *
100948 ATTAAT-A-AT-AAATCATTTCTAA-
1 ATTAATAATATCAAACCA-TT-AAAT
*
100970 ATTATTAATATCAAACCATTAAAT
1 ATTAATAATATCAAACCATTAAAT
100994 ATTAATAATA
1 ATTAATAATA
101004 AATCATTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
21 5 0.12
22 9 0.21
23 6 0.14
24 18 0.42
25 5 0.12
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (24 bp):
ATTAATAATATCAAACCATTAAAT
Found at i:100970 original size:46 final size:46
Alignment explanation
Indices: 100912--101011 Score: 191
Period size: 46 Copynumber: 2.2 Consensus size: 46
100902 TATTTTTACT
100912 AATCATTACTAAATTATTAATATCAAACCATTAAATATTAATAATA
1 AATCATTACTAAATTATTAATATCAAACCATTAAATATTAATAATA
*
100958 AATCATTTCTAAATTATTAATATCAAACCATTAAATATTAATAATA
1 AATCATTACTAAATTATTAATATCAAACCATTAAATATTAATAATA
101004 AATCATTA
1 AATCATTA
101012 TTACTAATCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (46 bp):
AATCATTACTAAATTATTAATATCAAACCATTAAATATTAATAATA
Found at i:101011 original size:21 final size:22
Alignment explanation
Indices: 100921--101000 Score: 94
Period size: 21 Copynumber: 3.6 Consensus size: 22
100911 TAATCATTAC
100921 TAAATTATTAATATCAAACCAT
1 TAAATTATTAATATCAAACCAT
*
100943 TAAA-TATTAATAAT-AAATCATTT
1 TAAATTATTAAT-ATCAAACCA--T
100966 CTAAATTATTAATATCAAACCAT
1 -TAAATTATTAATATCAAACCAT
100989 TAAA-TATTAATA
1 TAAATTATTAATA
101001 ATAAATCATT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
21 20 0.40
22 10 0.20
23 2 0.04
24 6 0.12
25 12 0.24
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAATTATTAATATCAAACCAT
Found at i:101014 original size:24 final size:24
Alignment explanation
Indices: 100941--101067 Score: 88
Period size: 24 Copynumber: 5.3 Consensus size: 24
100931 ATATCAAACC
100941 ATTAAATATTAATAATAAATCATT
1 ATTAAATATTAATAATAAATCATT
*
100965 -TCTAAATTATTAAT-ATCAAA-C--C
1 AT-TAAA-TATTAATAAT-AAATCATT
100987 ATTAAATATTAATAATAAATCATT
1 ATTAAATATTAATAATAAATCATT
* * * *
101011 ATT-ACTAATCATTACTAAATCATT
1 ATTAAAT-ATTAATAATAAATCATT
*
101035 ATTATAATTTTAA-ATATAAAATCATT
1 ATTA-AATATTAATA-AT-AAATCATT
101061 ATTAAAT
1 ATTAAAT
101068 TATGATTGTC
Statistics
Matches: 79, Mismatches: 11, Indels: 25
0.69 0.10 0.22
Matches are distributed among these distances:
21 10 0.13
22 7 0.09
23 4 0.05
24 28 0.35
25 16 0.20
26 14 0.18
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTAAATATTAATAATAAATCATT
Found at i:101020 original size:13 final size:12
Alignment explanation
Indices: 101004--101042 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
100994 ATTAATAATA
101004 AATCATTATTACT
1 AATCATTATTA-T
*
101017 AATCATTACTA-
1 AATCATTATTAT
101028 AATCATTATTAT
1 AATCATTATTAT
101040 AAT
1 AAT
101043 TTTAAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 10 0.43
12 3 0.13
13 10 0.43
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (12 bp):
AATCATTATTAT
Found at i:101481 original size:60 final size:59
Alignment explanation
Indices: 101408--101519 Score: 170
Period size: 60 Copynumber: 1.9 Consensus size: 59
101398 TAATCATTAC
* * * *
101408 TATCAAATGATTAAATATTAATAATAATTTCATTTTTACTAATTATTACTAAAATATAAA
1 TATCAAATCATTAAATATTAATAATAA-ATCATTATTACTAATCATTACTAAAATATAAA
*
101468 TATCAAATCATTAAATATTAATAATAAATCATTATTATTAATCATTACTAAA
1 TATCAAATCATTAAATATTAATAATAAATCATTATTACTAATCATTACTAAA
101520 TCATTATCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 21 0.45
60 26 0.55
ACGTcount: A:0.49, C:0.08, G:0.01, T:0.42
Consensus pattern (59 bp):
TATCAAATCATTAAATATTAATAATAAATCATTATTACTAATCATTACTAAAATATAAA
Found at i:101484 original size:21 final size:21
Alignment explanation
Indices: 101459--101501 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
101449 ATTATTACTA
101459 AAATATAAAT-ATCAAATCATT
1 AAATATAAATAAT-AAATCATT
*
101480 AAATATTAATAATAAATCATT
1 AAATATAAATAATAAATCATT
101501 A
1 A
101502 TTATTAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATATAAATAATAAATCATT
Found at i:101597 original size:536 final size:530
Alignment explanation
Indices: 100556--101600 Score: 1577
Period size: 536 Copynumber: 2.0 Consensus size: 530
100546 TTACTAAATA
* *
100556 AAATCATATCATTATTATAAATCAAACAAGTGTTCCATGGATGGGTATTAGTTATGTAACGAAAA
1 AAATCATATCATTATTATAAACCAAACAAGTGTTCCATGGATGGGTATAAGTTATGTAACGAAAA
*
100621 TATGGTTAATTGAAACACACGTCCATTCAAATGTTCAAGTCCTCGAATTATAAATGTAATATTGA
66 TATGGTTAATTGAAACACACGTCCATTCAAATGTTCAAGTCCTCGAATTATAAATGTAATATCGA
100686 TTAGGTCCCTCTATTTAAAAAGTCCACTCGAATAATTTATCGACAAAAATTACATAAATTCAACT
131 TTAGGTCCCTCTATTTAAAAAGTCCACTCGAATAATTTATCGACAAAAATTACATAAATTCAACT
*
100751 TCAATTCGAAGATCTATTAATTTATCAAATCATAAATATTATTATTTCATAAATATTAGTAATAA
196 TCAATTCGAAGATCTATTAATTTATCAAATCATAAATATTATTATTCCATAAATATTAGTAATAA
* * *
100816 TTTTTAAATCATAAGTATAAAATCATTATTATAATTTCATTATTACTAATCATTATTATCAAATG
261 TTATTAAATAATAAGTATAAAATCATTATTATAATTTCATTATTACTAATCATTACTATCAAATG
* * *
100881 ATTAAATATAAATAATAATTTTATTTTTACTAATCATTACTAAATTATTAATATCAAACCATTAA
326 ATTAAATATAAATAATAATTTCATTTTTACTAATCATTACTAAAATATAAATATCAAACCATTAA
* *
100946 ATATTAATAATAAATCATTTCTAAATTATTAATATCAAACCATTAAATATTAATAATAAATCATT
391 ATATTAATAATAAATCATTTCTAAATCATTAAAATCAAACCATTAAATATTAATAATAAATCATT
* * *
101011 ATTACTAATCATTACTAAATCATTATTATAATTTTAAATATAAAATCATTATTAAATTATGATTG
456 ATTAATAATCATTACTAAATCATTACTATAA-TTCAAATAT--AATCATTATTAAATTATGATTG
101076 TCAAATCATTACT
518 TCAAATCATTACT
* *
101089 AAATCATATTATTATTATAAACCAAATAAGTGTTCCATGGATGGGTATAAGTTATGTAACGAAAA
1 AAATCATATCATTATTATAAACCAAACAAGTGTTCCATGGATGGGTATAAGTTATGTAACGAAAA
* *
101154 TATGGTTAATTGAACCACATGTCCATTCAAATCTGTTCAAGTCCTCGAATTATAAATGTAATATC
66 TATGGTTAATTGAAACACACGTCCATTCAAA--TGTTCAAGTCCTCGAATTATAAATGTAATATC
**
101219 GATTAGGTCCCTCTATTTAAAAAGTCTGCTCGAATAATTTATC-AGCAAAAATTACATAAATTCA
129 GATTAGGTCCCTCTATTTAAAAAGTCCACTCGAATAATTTATCGA-CAAAAATTACATAAATTCA
* *
101283 ACTTCAATTCGAATATCTATTAATTTATCAAATCATTAAATATTATTATTCCATAATTATTAGTA
193 ACTTCAATTCGAAGATCTATTAATTTATCAAATCA-TAAATATTATTATTCCATAAATATTAGTA
*
101348 ATAATTATTAAATAATAAGTATCAAATCATTATTATAATTTCATTATTACTAATCATTACTATCA
257 ATAATTATTAAATAATAAGTATAAAATCATTATTATAATTTCATTATTACTAATCATTACTATCA
* * *
101413 AATGATTAAATATTAATAATAATTTCATTTTTACTAATTATTACTAAAATATAAATATCAAATCA
322 AATGATTAAATATAAATAATAATTTCATTTTTACTAATCATTACTAAAATATAAATATCAAACCA
* * *
101478 TTAAATATTAATAATAAATCATTAT-TATTAATCATTACTAAATCATTATCA-T-AATTTTAA-A
387 TTAAATATTAATAATAAATCATT-TCTA--AATCATTA--AAATCA-AACCATTAAATATTAATA
* *
101539 TATAAAATCATTATTAAATCATGATTA-TCAAATCATTACTA-AA-TCAAATCAT-ATCATTATT
446 -AT-AAATCATTATT-AATAATCATTACT-AAATCATTACTATAATTCAAAT-ATAATCATTATT
101600 A
506 A
101601 TAAACCAAAC
Statistics
Matches: 465, Mismatches: 32, Indels: 27
0.89 0.06 0.05
Matches are distributed among these distances:
533 90 0.19
534 1 0.00
535 125 0.27
536 182 0.39
537 1 0.00
538 13 0.03
539 11 0.02
540 20 0.04
541 22 0.05
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (530 bp):
AAATCATATCATTATTATAAACCAAACAAGTGTTCCATGGATGGGTATAAGTTATGTAACGAAAA
TATGGTTAATTGAAACACACGTCCATTCAAATGTTCAAGTCCTCGAATTATAAATGTAATATCGA
TTAGGTCCCTCTATTTAAAAAGTCCACTCGAATAATTTATCGACAAAAATTACATAAATTCAACT
TCAATTCGAAGATCTATTAATTTATCAAATCATAAATATTATTATTCCATAAATATTAGTAATAA
TTATTAAATAATAAGTATAAAATCATTATTATAATTTCATTATTACTAATCATTACTATCAAATG
ATTAAATATAAATAATAATTTCATTTTTACTAATCATTACTAAAATATAAATATCAAACCATTAA
ATATTAATAATAAATCATTTCTAAATCATTAAAATCAAACCATTAAATATTAATAATAAATCATT
ATTAATAATCATTACTAAATCATTACTATAATTCAAATATAATCATTATTAAATTATGATTGTCA
AATCATTACT
Found at i:101687 original size:103 final size:107
Alignment explanation
Indices: 101566--101783 Score: 336
Period size: 103 Copynumber: 2.1 Consensus size: 107
101556 ATCATGATTA
* *
101566 TCAAATCATTACTAAATCAAATCATATCATTATTATAAACCAAACCAGTGTTCCATGGATGGGTA
1 TCAAATCATTACTAAATCAAATCATATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTA
* *
101631 TTAG-T-TAT-G-TAATATGGTTAATTGAACCACACGTCCAT
66 TTAGTTATATAGAAAATATGGTTAATTGAACCACAAGTCCAT
*
101669 TCAAATCATTACTAAATCAAATCTTATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTA
1 TCAAATCATTACTAAATCAAATCATATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTA
*
101734 TTAGTTATATAACGAAAATATGGTTAATTGAACCACAAGTCTAT
66 TTAGTTATAT-A-GAAAATATGGTTAATTGAACCACAAGTCCAT
101778 TCAAAT
1 TCAAAT
101784 TTGTTCAAGT
Statistics
Matches: 103, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
103 66 0.64
104 1 0.01
105 3 0.03
108 1 0.01
109 32 0.31
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (107 bp):
TCAAATCATTACTAAATCAAATCATATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTA
TTAGTTATATAGAAAATATGGTTAATTGAACCACAAGTCCAT
Found at i:101791 original size:598 final size:606
Alignment explanation
Indices: 101089--102738 Score: 2816
Period size: 598 Copynumber: 2.7 Consensus size: 606
101079 AATCATTACT
* * * * * *
101089 AAATCATATTATTATTATAAACCAAATAAGTGTTCCATGGATGGGTATAAGTTATGTAACGAAAA
1 AAATCTTATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTATTAGTTATATAACGAAAA
* *
101154 TATGGTTAATTGAACCACATGTCCATTCAAATCTGTTCAAGTCCTCGAATTATAAATGTAATATC
66 TATGGTTAATTGAACCACAAGTCTATTCAAATCTGTTCAAGTCCTCGAATTATAAATGTAATATC
* *
101219 GATTAGGTCCCTCTATTTAAAAAGTCTGCTCGAATAATTTATC-AGCAAAAATTACATAAATTCA
131 GATTAGGTCCCTCTATTTAAAAAGTCCGCTCGAATAATTTATCGA-CAAAAATTACATAAATTTA
*
101283 ACTTCAATTCGAATATCTATTAATTTATCAAATCATTAAATATTATTATTCCATAATTATTAGTA
195 ACTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTATTCCATAATTATTAGTA
*
101348 ATAATTATTAAATAATAAGTATCAAATCATTATTATAATTTCATTATTACTAATCATTACTATCA
260 ATAATTATTAAATCATAAGTATCAAATCATTATTATAATTTCATTATTACTAATCATTACTATCA
*
101413 AATGATTAAATATTAATAATAATTTCATTTTTACTAATTATTACTAAAATATAAATATCAAATCA
325 AATGATTAAATATTAATAATAATTTCATTATTACTAATTATTACTAAAATATAAATATCAAATCA
101478 TTAAATATTAATAATAAATCATTATTATTAATCATTACTAAATCATTATCATAATTTTAAATATA
390 TTAAATATTAATAATAAATCATTATTATTAATCATTACTAAATCATTATCATAATTTTAAATATA
101543 AAATCATTATTAAATCATGATTATCAAATCATTACTAAATC-AA-A-T-C-AT-ATC-AT-TATT
455 AAATCATTATTAAATCATGATTATCAAATCATTACTAAATCAAACATTACAATAATCAATATATT
* *
101600 ATAAACCAAACCAGTGTTCCATGGATGGGTATTAGTTATGTAATATGGTTAATTGAACCACACGT
520 ATAAACCAAACCAGTGTTCCATAGATGGGTATTAGTTATGTAATATGGTTAATTGAACCACACAT
101665 CCATTCAAATCATTACTAAATC
585 CCATTCAAATCATTACTAAATC
101687 AAATCTTATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTATTAGTTATATAACGAAAA
1 AAATCTTATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTATTAGTTATATAACGAAAA
* *
101752 TATGGTTAATTGAACCACAAGTCTATTCAAATTTGTTCAAGTCCTCGAATTATAAATATAATATC
66 TATGGTTAATTGAACCACAAGTCTATTCAAATCTGTTCAAGTCCTCGAATTATAAATGTAATATC
* *
101817 GATTAGGTCCCTCTATTTAAAAAGTCCACTCAAATAATTTATCGACAAAAATTACATAAATTTAA
131 GATTAGGTCCCTCTATTTAAAAAGTCCGCTCGAATAATTTATCGACAAAAATTACATAAATTTAA
101882 CTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTATTCCATAATTATTAGTAA
196 CTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTATTCCATAATTATTAGTAA
101947 TAATTATTAAATCATAAGTATCAAATCATTATTATAATTTCATTATTACTAATCATTACTATCAA
261 TAATTATTAAATCATAAGTATCAAATCATTATTATAATTTCATTATTACTAATCATTACTATCAA
*
102012 ATGATTAAATATTAATAATAATTTCATTATTACTAATTATTACTAAATTATAAATATCAAATCAT
326 ATGATTAAATATTAATAATAATTTCATTATTACTAATTATTACTAAAATATAAATATCAAATCAT
* * *
102077 TAAATATTAATAATAAATCATTATTACTAATCATTACTAAATCATTATTATACTTTTAAATATAA
391 TAAATATTAATAATAAATCATTATTATTAATCATTACTAAATCATTATCATAATTTTAAATATAA
102142 AATCATTATTAAATCATGATTATCAAATCATTACTAAATCAAATCATTACTAAATCAAATCATAT
456 AATCATTATTAAATCATGATTATCAAATCATTACTAAATCAAA-CATTAC--AAT--AATCA-AT
102207 CAATATTATAAACCAAACCAGTGTTCCATAGATGGGTATTAGTTATGTAATATGGTTAATTGAAC
515 --ATATTATAAACCAAACCAGTGTTCCATAGATGGGTATTAGTTATGTAATATGGTTAATTGAAC
102272 CACACATCCATTCAAATCATTACTAAATC
578 CACACATCCATTCAAATCATTACTAAATC
* *
102301 AAATCTTATCATTATTATAAACTAAACAAGTGTTCCATGAATGAGTATTAGTTATATAACGAAAA
1 AAATCTTATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTATTAGTTATATAACGAAAA
*
102366 TATGGTTAATTGAACCACACGTCTATTCAAATCTGTTCAAGTCCTCGAATTATAAATGTAATATC
66 TATGGTTAATTGAACCACAAGTCTATTCAAATCTGTTCAAGTCCTCGAATTATAAATGTAATATC
102431 GATTAGGTCCCTCTATTTAAAAAGTCCGCTCGAATAATTTATCGACAAAAATTACATAAATTTAA
131 GATTAGGTCCCTCTATTTAAAAAGTCCGCTCGAATAATTTATCGACAAAAATTACATAAATTTAA
* *
102496 CTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTATTCCATAATTATTATTCC
196 CTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTATTCCATAATTATTAGT-A
*
102561 ATAATTATTAAATCATAAGTATCAAATCATTATTATTATTTCATTATTACTAATCATTACTATCA
260 ATAATTATTAAATCATAAGTATCAAATCATTATTATAATTTCATTATTACTAATCATTACTATCA
* * * *
102626 AATGATTAAATATTAATAATAATTTCATTACTACTAATCATTACT-AAATTTTAATATCAAATCA
325 AATGATTAAATATTAATAATAATTTCATTATTACTAATTATTACTAAAATATAAATATCAAATCA
* *
102690 TTAAATATTAATAATAATTTCATTATTATTAATCATTACTAAATTATTA
390 TTAAATATTAATAATAA-ATCATTATTATTAATCATTACTAAATCATTA
102739 ATATCAAATT
Statistics
Matches: 992, Mismatches: 41, Indels: 21
0.94 0.04 0.02
Matches are distributed among these distances:
598 472 0.48
599 3 0.00
601 1 0.00
602 1 0.00
603 1 0.00
606 2 0.00
609 3 0.00
611 2 0.00
614 372 0.38
615 135 0.14
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.38
Consensus pattern (606 bp):
AAATCTTATCATTATTATAAACCAAACAAGTGTTCCATGAATGGGTATTAGTTATATAACGAAAA
TATGGTTAATTGAACCACAAGTCTATTCAAATCTGTTCAAGTCCTCGAATTATAAATGTAATATC
GATTAGGTCCCTCTATTTAAAAAGTCCGCTCGAATAATTTATCGACAAAAATTACATAAATTTAA
CTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTATTCCATAATTATTAGTAA
TAATTATTAAATCATAAGTATCAAATCATTATTATAATTTCATTATTACTAATCATTACTATCAA
ATGATTAAATATTAATAATAATTTCATTATTACTAATTATTACTAAAATATAAATATCAAATCAT
TAAATATTAATAATAAATCATTATTATTAATCATTACTAAATCATTATCATAATTTTAAATATAA
AATCATTATTAAATCATGATTATCAAATCATTACTAAATCAAACATTACAATAATCAATATATTA
TAAACCAAACCAGTGTTCCATAGATGGGTATTAGTTATGTAATATGGTTAATTGAACCACACATC
CATTCAAATCATTACTAAATC
Found at i:102101 original size:59 final size:60
Alignment explanation
Indices: 101988--102121 Score: 200
Period size: 59 Copynumber: 2.3 Consensus size: 60
101978 TTATAATTTC
* * * *
101988 ATTATTACT-AATCATTACTATCAAATGATTAAATATTAATAATAATTTCATTATTACTA
1 ATTATTACTAAATCATAAATATCAAATCATTAAATATTAATAATAATATCATTATTACTA
*
102047 ATTATTACTAAATTATAAATATCAAATCATTAAATATTAATAATAA-ATCATTATTACTA
1 ATTATTACTAAATCATAAATATCAAATCATTAAATATTAATAATAATATCATTATTACTA
*
102106 ATCATTACTAAATCAT
1 ATTATTACTAAATCAT
102122 TATTATACTT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 35 0.52
60 32 0.48
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.42
Consensus pattern (60 bp):
ATTATTACTAAATCATAAATATCAAATCATTAAATATTAATAATAATATCATTATTACTA
Found at i:102102 original size:24 final size:24
Alignment explanation
Indices: 102075--102155 Score: 58
Period size: 24 Copynumber: 3.3 Consensus size: 24
102065 ATATCAAATC
102075 ATTAAATATTAATAATAAATCATT
1 ATTAAATATTAATAATAAATCATT
* * * *
102099 ATT-ACTAATCATTACTAAATCATT
1 ATTAAAT-ATTAATAATAAATCATT
* *
102123 ATTATACTTTTAA-ATATAAAATCATT
1 ATTA-AATATTAATA-AT-AAATCATT
102149 ATTAAAT
1 ATTAAAT
102156 CATGATTATC
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
23 2 0.05
24 21 0.49
25 5 0.12
26 15 0.35
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (24 bp):
ATTAAATATTAATAATAAATCATT
Found at i:102157 original size:11 final size:11
Alignment explanation
Indices: 102090--102182 Score: 56
Period size: 11 Copynumber: 8.6 Consensus size: 11
102080 ATATTAATAA
102090 TAAATCATTAT
1 TAAATCATTAT
*
102101 TACTAATCATTAC
1 TA--AATCATTAT
102114 TAAATCATTAT
1 TAAATCATTAT
*
102125 TATA-C-TT-T
1 TAAATCATTAT
102133 TAAAT-A-TA-
1 TAAATCATTAT
102141 -AAATCATTAT
1 TAAATCATTAT
102151 TAAATCATGATTAT
1 TAAATC---ATTAT
* *
102165 CAAATCATTAC
1 TAAATCATTAT
102176 TAAATCA
1 TAAATCA
102183 AATCATTACT
Statistics
Matches: 63, Mismatches: 7, Indels: 24
0.67 0.07 0.26
Matches are distributed among these distances:
7 4 0.06
8 6 0.10
9 4 0.06
10 1 0.02
11 28 0.44
13 10 0.16
14 10 0.16
ACGTcount: A:0.45, C:0.13, G:0.01, T:0.41
Consensus pattern (11 bp):
TAAATCATTAT
Found at i:102184 original size:16 final size:16
Alignment explanation
Indices: 102163--102204 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
102153 AATCATGATT
102163 ATCAAATCATTACTAA
1 ATCAAATCATTACTAA
102179 ATCAAATCATTACTAA
1 ATCAAATCATTACTAA
102195 ATCAAATCAT
1 ATCAAATCAT
102205 ATCAATATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (16 bp):
ATCAAATCATTACTAA
Found at i:102555 original size:14 final size:14
Alignment explanation
Indices: 102536--102570 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
102526 ATCATTAAAT
102536 ATTATTATTCCATA
1 ATTATTATTCCATA
102550 ATTATTATTCCATA
1 ATTATTATTCCATA
102564 ATTATTA
1 ATTATTA
102571 AATCATAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (14 bp):
ATTATTATTCCATA
Found at i:102600 original size:42 final size:41
Alignment explanation
Indices: 102550--102633 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 41
102540 TTATTCCATA
* *
102550 ATTATTATTCCATAATTATTAAATCATAAGTATCAAATCATT
1 ATTATTATTCCATAATTACT-AATCATAACTATCAAATCATT
* * * *
102592 ATTATTATTTCATTATTACTAATCATTACTATCAAATGATT
1 ATTATTATTCCATAATTACTAATCATAACTATCAAATCATT
102633 A
1 A
102634 AATATTAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 19 0.53
42 17 0.47
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.45
Consensus pattern (41 bp):
ATTATTATTCCATAATTACTAATCATAACTATCAAATCATT
Found at i:102604 original size:14 final size:14
Alignment explanation
Indices: 102536--102609 Score: 58
Period size: 14 Copynumber: 5.3 Consensus size: 14
102526 ATCATTAAAT
*
102536 ATTATTATTCCATA
1 ATTATTATTTCATA
*
102550 ATTATTATTCCATA
1 ATTATTATTTCATA
**
102564 ATTATTAAATCATA
1 ATTATTATTTCATA
* * ** *
102578 AGTATCAAATCATT
1 ATTATTATTTCATA
*
102592 ATTATTATTTCATT
1 ATTATTATTTCATA
102606 ATTA
1 ATTA
102610 CTAATCATTA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 50 1.00
ACGTcount: A:0.39, C:0.11, G:0.01, T:0.49
Consensus pattern (14 bp):
ATTATTATTTCATA
Found at i:102640 original size:42 final size:42
Alignment explanation
Indices: 102552--102640 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 42
102542 ATTCCATAAT
* * *
102552 TATTATTCCATAATTATTAAATCATAAGTATCAAATCATTAT
1 TATTATTCCATAATTACTAAATCATAACTATCAAATCATTAA
* * * *
102594 TATTATTTCATTATTACT-AATCATTACTATCAAATGATTAAA
1 TATTATTCCATAATTACTAAATCATAACTATCAAATCATT-AA
102636 TATTA
1 TATTA
102641 ATAATAATTT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 18 0.46
42 21 0.54
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.45
Consensus pattern (42 bp):
TATTATTCCATAATTACTAAATCATAACTATCAAATCATTAA
Found at i:102653 original size:49 final size:49
Alignment explanation
Indices: 102598--102730 Score: 149
Period size: 59 Copynumber: 2.5 Consensus size: 49
102588 CATTATTATT
*
102598 ATTTCATTATTACTAATCATTACTATCAAATGATTAAATATTAATAATA
1 ATTTCATTATTACTAATCATTACTATCAAATCATTAAATATTAATAATA
*
102647 ATTTCATTACTACTAATCATTACTAAATTTTAATATCAAATCATTAAATATTAATAATA
1 ATTTCATTATTACTAATCATTAC----------TATCAAATCATTAAATATTAATAATA
*
102706 ATTTCATTATTATTAATCATTACTA
1 ATTTCATTATTACTAATCATTACTA
102731 AATTATTAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 20
0.74 0.04 0.21
Matches are distributed among these distances:
49 24 0.34
59 46 0.66
ACGTcount: A:0.44, C:0.11, G:0.01, T:0.44
Consensus pattern (49 bp):
ATTTCATTATTACTAATCATTACTATCAAATCATTAAATATTAATAATA
Found at i:102700 original size:21 final size:21
Alignment explanation
Indices: 102670--102762 Score: 63
Period size: 21 Copynumber: 4.6 Consensus size: 21
102660 TAATCATTAC
*
102670 TAAATTTTAATATCAAATCAT
1 TAAATATTAATATCAAATCAT
*
102691 TAAATATTAATAAT-AATTTCAT
1 TAAATATTAAT-ATCAA-ATCAT
* * *
102713 T-ATTATT-A-ATC--ATTAC
1 TAAATATTAATATCAAATCAT
*
102729 TAAATTATTAATATCAAATTAT
1 TAAA-TATTAATATCAAATCAT
102751 TAAATATTAATA
1 TAAATATTAATA
102763 ATAATTTCAT
Statistics
Matches: 55, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
16 3 0.05
17 1 0.02
18 6 0.11
19 1 0.02
20 4 0.07
21 25 0.45
22 15 0.27
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAATATTAATATCAAATCAT
Found at i:102783 original size:60 final size:60
Alignment explanation
Indices: 102606--102814 Score: 311
Period size: 60 Copynumber: 3.6 Consensus size: 60
102596 TTATTTCATT
* * *
102606 ATTACT-AATCATTACTATCAAATGATTAAATATTAATAATAATTTCATTACTACTAATC
1 ATTACTAAATCATTAATATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATC
* * *
102665 ATTACTAAAT-TTTAATATCAAATCATTAAATATTAATAATAATTTCATTATTATTAATC
1 ATTACTAAATCATTAATATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATC
*
102724 ATTACTAAATTATTAATATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATC
1 ATTACTAAATCATTAATATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATC
*
102784 ATTACTAAATCATTATTAT--AATT-TTAAATAT
1 ATTACTAAATCATTAATATCAAATTATTAAATAT
102815 AAAATCATTA
Statistics
Matches: 138, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
57 8 0.06
58 4 0.03
59 60 0.43
60 66 0.48
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.44
Consensus pattern (60 bp):
ATTACTAAATCATTAATATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATC
Found at i:102787 original size:13 final size:12
Alignment explanation
Indices: 102709--102876 Score: 61
Period size: 11 Copynumber: 14.0 Consensus size: 12
102699 AATAATAATT
102709 TCATTATTATTAA
1 TCATTATTA-TAA
*
102722 TCATTACTA-AA
1 TCATTATTATAA
* *
102733 TTATTAATATCAA
1 TCATTATTAT-AA
102746 --ATTATTA-AA
1 TCATTATTATAA
*
102755 T-ATTAATAATAA
1 TCATT-ATTATAA
102767 TTTCATTATTACTAA
1 --TCATTATTA-TAA
*
102782 TCATTACTA-AA
1 TCATTATTATAA
102793 TCATTATTATAA
1 TCATTATTATAA
* *
102805 T-TTTAAATATAAAA
1 TCATT--AT-TATAA
102819 TCATTATTA-AA
1 TCATTATTATAA
*
102830 TCATGATTATCAAA
1 TCATTATTAT--AA
* *
102844 CCATTACTA-AA
1 TCATTATTATAA
*
102855 TCA-TATCAT-A
1 TCATTATTATAA
102865 TCATTATTATAA
1 TCATTATTATAA
102877 ACCAAACAAG
Statistics
Matches: 116, Mismatches: 19, Indels: 41
0.66 0.11 0.23
Matches are distributed among these distances:
9 2 0.02
10 10 0.09
11 49 0.42
12 8 0.07
13 22 0.19
14 17 0.15
15 8 0.07
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (12 bp):
TCATTATTATAA
Found at i:103232 original size:21 final size:21
Alignment explanation
Indices: 103208--103294 Score: 67
Period size: 21 Copynumber: 4.3 Consensus size: 21
103198 TAATTTAATT
103208 ATTACTAATCATTACTAAATC
1 ATTACTAATCATTACTAAATC
* * *
103229 ATTAAT-ATCAAATATTAAAT-
1 ATTACTAATC-ATTACTAAATC
* * * *
103249 ATTAATAATAATT--T-CATT
1 ATTACTAATCATTACTAAATC
103267 ATTACTAATCATTACTAAATC
1 ATTACTAATCATTACTAAATC
103288 ATTACTA
1 ATTACTA
103295 TCAAATCATT
Statistics
Matches: 50, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
17 2 0.04
18 12 0.24
20 12 0.24
21 24 0.48
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTACTAATCATTACTAAATC
Found at i:103246 original size:59 final size:60
Alignment explanation
Indices: 103159--103355 Score: 326
Period size: 60 Copynumber: 3.3 Consensus size: 60
103149 TAATTTTATT
* * *
103159 ATTACT-AATCATTATTATTAAATGATTAAATATTAATAATAATTTAATTATTACTAATC
1 ATTACTAAATCATTATTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATC
*
103218 ATTACTAAATCATTAATATCAAAT-ATTAAATATTAATAATAATTTCATTATTACTAATC
1 ATTACTAAATCATTATTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATC
*
103277 ATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATC
1 ATTACTAAATCATTATTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATC
*
103337 ATTACTAAATAATTATTAT
1 ATTACTAAATCATTATTAT
103356 AATTTTAAAT
Statistics
Matches: 130, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
59 63 0.48
60 67 0.52
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.44
Consensus pattern (60 bp):
ATTACTAAATCATTATTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATC
Found at i:103351 original size:21 final size:20
Alignment explanation
Indices: 103185--103347 Score: 81
Period size: 18 Copynumber: 8.3 Consensus size: 20
103175 ATTAAATGAT
* *
103185 TAAATATTAATAATAATT--
1 TAAATATTACTAATCATTAC
*
103203 TAATTATTACTAATCATTAC
1 TAAATATTACTAATCATTAC
* * *
103223 TAAATCATTAAT-ATCAAATAT
1 TAAAT-ATTACTAATC-ATTAC
* *
103244 TAAATATTAATAATAATT--
1 TAAATATTACTAATCATTAC
* *
103262 TCATTATTACTAATCATTAC
1 TAAATATTACTAATCATTAC
* *
103282 TAAATCATTACT-ATCAAATCAT
1 TAAAT-ATTACTAATC--ATTAC
* *
103304 TAAATATTAATAATAATT--
1 TAAATATTACTAATCATTAC
* *
103322 TCATTATTACTAATCATTAC
1 TAAATATTACTAATCATTAC
103342 TAAATA
1 TAAATA
103348 ATTATTATAA
Statistics
Matches: 106, Mismatches: 26, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
18 43 0.41
20 27 0.25
21 26 0.25
22 10 0.09
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAATATTACTAATCATTAC
Found at i:103418 original size:553 final size:556
Alignment explanation
Indices: 102283--103531 Score: 2128
Period size: 553 Copynumber: 2.3 Consensus size: 556
102273 ACACATCCAT
* * * *
102283 TCAAATCATTACTAAATCAAATCTTATCATTATTATAAACTAAACAAGTGTTCCATGAATGAGTA
1 TCAAATCATTACTAAATCAAATCATATCATTATTATAAACCAAACAAGTGTTTCATGGATGAGTA
* *
102348 TTAGTTATATAACGAAAATATGGTTAATTGAACCACACGTCTATTCAAATCTGTTCAAGTCCTCG
66 TTAGTTATGTAACGAAAATATGGTTAATTGAACCACACGTCCATTCAAATCTGTTCAAGTCCTCG
* * *
102413 AATTATAAATGTAATATCGATTAGGTCCCTCTATTTAAAAAGTCCGCTCGAATAATTTATCGACA
131 AATTATAAATGTAACACCGATTAGGTCCCTCTATTTAAAAAGTCAGCTCGAATAATTTATCGACA
*
102478 AAAATTACATAAATTTAACTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTA
196 AAAATTACATAAATTCAACTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTA
* * *
102543 TTCCATAATTATTATTCCATAATTATTAAATCATAAGTATCAAATCATTATTATTATTTCATTAT
261 TTCCATAATTATTAGTCAATAATTATTAAATCATAAGTATCAAATCATTATTATAATTTCATTAT
*
102608 TACTAATCATTACTATCAAATGATTAAATATTAATAATAATTTCATTACTACTAATCATTACTAA
326 TACTAATCATTACTATCAAATGATTAAATATTAATAATAATTTAATTACTACTAATCATTACTAA
* * *
102673 ATTTTAATATCAAATCATTAAATATTAATAATAATTTCATTATTATTAATCATTACTAAATTATT
391 ATATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATT
* *
102738 AATATCAAATTATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTATTAT
456 AATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATAATTATTAT
*
102803 AATTTTAAATATAAAATCATTATTAAATCATGATTA
521 AATTTTAAATATAAAATCATTATTAAATCATAATTA
* * * *
102839 TCAAACCATTACTAAATCATATCATATCATTATTATAAACCAAACAAGTGTTTCATGGATGTGTG
1 TCAAATCATTACTAAATCAAATCATATCATTATTATAAACCAAACAAGTGTTTCATGGATGAGTA
102904 TTAGTTATGTAACGAAAATATGGTTAATTGAACCACACGTCCATTCAAATCTGTTCAAGTCCTCG
66 TTAGTTATGTAACGAAAATATGGTTAATTGAACCACACGTCCATTCAAATCTGTTCAAGTCCTCG
102969 AATTATAAATGTAACACCGATTAGGTCCCTCTATTTAAAAAGTCAGCTCGAATAATTTATCGACA
131 AATTATAAATGTAACACCGATTAGGTCCCTCTATTTAAAAAGTCAGCTCGAATAATTTATCGACA
103034 AAAATTACATAAATTCAACTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATT-
196 AAAATTACATAAATTCAACTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTA
* *
103098 TTCCATAATTATTAGT-AATAATTATTAAAT-ATAAGTATCAAATTATTATTATAATTTTATTAT
261 TTCCATAATTATTAGTCAATAATTATTAAATCATAAGTATCAAATCATTATTATAATTTCATTAT
* * *
103161 TACTAATCATTATTATTAAATGATTAAATATTAATAATAATTTAATTATTACTAATCATTACTAA
326 TACTAATCATTACTATCAAATGATTAAATATTAATAATAATTTAATTACTACTAATCATTACTAA
103226 ATCATTAATATCAAAT-ATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCAT
391 AT-ATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCAT
*
103290 TACTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATAATTATTA
455 TAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATAATTATTA
*
103355 TAATTTTAAATATAAAGTCATTATTAAATCATAATTA
520 TAATTTTAAATATAAAATCATTATTAAATCATAATTA
* * * *
103392 TCAAATCATTACTAAATTAAATCATATCATTATTATAAACCAAACCATTGTTTCATGGATGGGTA
1 TCAAATCATTACTAAATCAAATCATATCATTATTATAAACCAAACAAGTGTTTCATGGATGAGTA
* *
103457 TTAGTTATGTAACGAAAATATGGTTAATTGAACCACACATCCATTCAAATATGTTCAAGTCCTCG
66 TTAGTTATGTAACGAAAATATGGTTAATTGAACCACACGTCCATTCAAATCTGTTCAAGTCCTCG
103522 AATTATAAAT
131 AATTATAAAT
103532 CATTACAAAA
Statistics
Matches: 652, Mismatches: 40, Indels: 5
0.94 0.06 0.01
Matches are distributed among these distances:
553 367 0.56
554 25 0.04
555 15 0.02
556 245 0.38
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (556 bp):
TCAAATCATTACTAAATCAAATCATATCATTATTATAAACCAAACAAGTGTTTCATGGATGAGTA
TTAGTTATGTAACGAAAATATGGTTAATTGAACCACACGTCCATTCAAATCTGTTCAAGTCCTCG
AATTATAAATGTAACACCGATTAGGTCCCTCTATTTAAAAAGTCAGCTCGAATAATTTATCGACA
AAAATTACATAAATTCAACTTCAATTCGAAGATCTATTAATTTATCAAATCATTAAATATTATTA
TTCCATAATTATTAGTCAATAATTATTAAATCATAAGTATCAAATCATTATTATAATTTCATTAT
TACTAATCATTACTATCAAATGATTAAATATTAATAATAATTTAATTACTACTAATCATTACTAA
ATATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATT
AATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATAATTATTAT
AATTTTAAATATAAAATCATTATTAAATCATAATTA
Found at i:106533 original size:19 final size:19
Alignment explanation
Indices: 106511--106549 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
106501 AATATAAATT
106511 AAACA-AAATATATTTTAAA
1 AAACACAAATAT-TTTTAAA
106530 AAACACTAAATATTTTTAAA
1 AAACAC-AAATATTTTTAAA
106550 CATAATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 7 0.39
21 6 0.33
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
AAACACAAATATTTTTAAA
Done.