Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007739.1 Hibiscus syriacus cultivar Beakdansim tig00109999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 642700
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 4
Found at i:107090 original size:27 final size:28
Alignment explanation
Indices: 107044--107096 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
107034 ATAATCTAAT
107044 ATATAACTTAAACTAACAAACTAATATA
1 ATATAACTTAAACTAACAAACTAATATA
*
107072 ATATACCTT-AACTAACAAACTAATA
1 ATATAACTTAAACTAACAAACTAATA
107097 ATTTATACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (28 bp):
ATATAACTTAAACTAACAAACTAATATA
Found at i:107103 original size:27 final size:28
Alignment explanation
Indices: 107040--107104 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
107030 TTATATAATC
*
107040 TAATATATAACTTAAACTAACAAACTAA
1 TAATATATACCTTAAACTAACAAACTAA
107068 T-ATAATATACCTT-AACTAACAAACTAA
1 TAAT-ATATACCTTAAACTAACAAACTAA
*
107095 TAATTTATAC
1 TAATATATAC
107105 TAACAAACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 22 0.67
28 11 0.33
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.32
Consensus pattern (28 bp):
TAATATATACCTTAAACTAACAAACTAA
Found at i:107661 original size:33 final size:34
Alignment explanation
Indices: 107609--107673 Score: 123
Period size: 33 Copynumber: 1.9 Consensus size: 34
107599 GAGGTCGACT
107609 GGAAGGCATGGCGACCTATGTATGGGAGTGTTCG
1 GGAAGGCATGGCGACCTATGTATGGGAGTGTTCG
107643 GGAAGGCAT-GCGACCTATGTATGGGAGTGTT
1 GGAAGGCATGGCGACCTATGTATGGGAGTGTT
107674 GGAGACGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 22 0.71
34 9 0.29
ACGTcount: A:0.22, C:0.14, G:0.40, T:0.25
Consensus pattern (34 bp):
GGAAGGCATGGCGACCTATGTATGGGAGTGTTCG
Found at i:109658 original size:98 final size:98
Alignment explanation
Indices: 109468--109665 Score: 360
Period size: 98 Copynumber: 2.0 Consensus size: 98
109458 AGTAATGATC
*
109468 CATAAATGGTTTCTGTAAGGGGAATGCGCCCACGTCGATCCTCCCATATCATTACCCACTCATAG
1 CATAAATGGTTTCTGTAAGGAGAATGCGCCCACGTCGATCCTCCCATATCATTACCCACTCATAG
109533 TGTTTAGCAGTCAGTCGACTTCTTTTTTCCCCA
66 TGTTTAGCAGTCAGTCGACTTCTTTTTTCCCCA
*
109566 CATAAATGGTTTCTGTAAGGAGAATGCGCCCATGTCGATCCTCCCATATCATTACCCACTCATAG
1 CATAAATGGTTTCTGTAAGGAGAATGCGCCCACGTCGATCCTCCCATATCATTACCCACTCATAG
109631 TGTTTCAGCAGTCAGTCGACTTCTTTTTTTCCCCA
66 TGTTT-AGCAGTCAGTCGACTTC-TTTTTTCCCCA
109666 TCCGTCGATG
Statistics
Matches: 96, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
98 68 0.71
99 17 0.18
100 11 0.11
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (98 bp):
CATAAATGGTTTCTGTAAGGAGAATGCGCCCACGTCGATCCTCCCATATCATTACCCACTCATAG
TGTTTAGCAGTCAGTCGACTTCTTTTTTCCCCA
Found at i:109889 original size:2 final size:2
Alignment explanation
Indices: 109882--109917 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
109872 TTGAAACTAA
109882 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
109918 CAAAACAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:114099 original size:14 final size:14
Alignment explanation
Indices: 114054--114111 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 14
114044 ATCTGGGTAT
*
114054 TCGGTACCCGACATA
1 TCGGTACCCGA-AAA
*
114069 TAGGTACCCGCAAAA
1 TCGGTACCCG-AAAA
114084 TCGGTACCCGAAAA
1 TCGGTACCCGAAAA
*
114098 TCGGGTACCTGAAA
1 TC-GGTACCCGAAA
114112 CATCCGGGTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
14 6 0.16
15 30 0.81
16 1 0.03
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (14 bp):
TCGGTACCCGAAAA
Found at i:117154 original size:46 final size:46
Alignment explanation
Indices: 117087--117181 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
117077 ATACCAAATG
117087 TTTAGGACGTGAATTTATGCGATTTATTTTTACATGTATGAACGAA
1 TTTAGGACGTGAATTTATGCGATTTATTTTTACATGTATGAACGAA
117133 TTTAGGACGTGAATTTATGCGATTTATTTTTACATGTATGAACGAA
1 TTTAGGACGTGAATTTATGCGATTTATTTTTACATGTATGAACGAA
117179 TTT
1 TTT
117182 GGTGAAGTAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.43
Consensus pattern (46 bp):
TTTAGGACGTGAATTTATGCGATTTATTTTTACATGTATGAACGAA
Found at i:122204 original size:29 final size:31
Alignment explanation
Indices: 122153--122219 Score: 102
Period size: 29 Copynumber: 2.2 Consensus size: 31
122143 TTAGAATGAT
*
122153 TAAAATAAAAATAATTCAAAAGTTTAGTGAG
1 TAAAATAAAAATAATTCAAAAGTATAGTGAG
*
122184 TAAATTAAAAA-AATT-AAAAGTATAGTGAG
1 TAAAATAAAAATAATTCAAAAGTATAGTGAG
122213 TAAAATA
1 TAAAATA
122220 GGAGAGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 19 0.58
30 4 0.12
31 10 0.30
ACGTcount: A:0.58, C:0.01, G:0.12, T:0.28
Consensus pattern (31 bp):
TAAAATAAAAATAATTCAAAAGTATAGTGAG
Found at i:124272 original size:2 final size:2
Alignment explanation
Indices: 124267--124291 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
124257 GATTTTTTTA
124267 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
124292 CCCCCATCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:124475 original size:24 final size:24
Alignment explanation
Indices: 124448--124499 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
124438 AACGGATATA
*
124448 TCAAAAATCAAAACATAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
** * *
124472 TCAAGTATCATATCAGAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
124496 TCAA
1 TCAA
124500 GTAACATATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (24 bp):
TCAAAAATCAAAACAGAAATCAGG
Found at i:124538 original size:24 final size:24
Alignment explanation
Indices: 124471--124565 Score: 113
Period size: 24 Copynumber: 4.0 Consensus size: 24
124461 CATAAATCAG
* *
124471 GTCAAGTATCATATCAGAAAT-CAG
1 GTCAAGTATCAGATCAG-AATCCAA
* *
124495 GTCAAGTAACATATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
*
124519 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
124543 GTC-AGATATCAGATCAGAATCCA
1 GTCAAG-TATCAGATCAGAATCCA
124566 GATCAGAATC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 5 0.08
24 59 0.92
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:124559 original size:12 final size:11
Alignment explanation
Indices: 124526--124578 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 11
124516 CAAGTCAAGT
124526 ATCAGATCAGA
1 ATCAGATCAGA
124537 ATCCATG-TCAGA
1 AT-CA-GATCAGA
124549 TATCAGATCAGA
1 -ATCAGATCAGA
124561 ATCCAGATCAGA
1 AT-CAGATCAGA
124573 ATCAGA
1 ATCAGA
124579 ACAAAATTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
11 9 0.24
12 25 0.68
13 3 0.08
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (11 bp):
ATCAGATCAGA
Found at i:124571 original size:24 final size:24
Alignment explanation
Indices: 124507--124578 Score: 89
Period size: 24 Copynumber: 3.0 Consensus size: 24
124497 CAAGTAACAT
124507 ATCAGAATCCA-AGTCA-AGTATCAG
1 ATCAGAATCCAGA-TCAGA-TATCAG
124531 ATCAGAATCCATG-TCAGATATCAG
1 ATCAGAATCCA-GATCAGATATCAG
124555 ATCAGAATCCAGATCAGA-ATCAG
1 ATCAGAATCCAGATCAGATATCAG
124578 A
1 A
124579 ACAAAATTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
23 7 0.16
24 36 0.82
25 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (24 bp):
ATCAGAATCCAGATCAGATATCAG
Found at i:132006 original size:17 final size:19
Alignment explanation
Indices: 131986--132027 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
131976 TTAATTTGGG
*
131986 ATTAGGGTT-AGTTTA-AT
1 ATTAGGGTTAAGATTATAT
*
132003 ATTAAGGTTAAGATTATAT
1 ATTAGGGTTAAGATTATAT
132022 ATTAGG
1 ATTAGG
132028 AATTTTGGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (19 bp):
ATTAGGGTTAAGATTATAT
Found at i:132966 original size:21 final size:21
Alignment explanation
Indices: 132942--133010 Score: 111
Period size: 21 Copynumber: 3.3 Consensus size: 21
132932 TTTTAATTGA
*
132942 TGTGAGGTAGTTGTCTTAACT
1 TGTGAGGTGGTTGTCTTAACT
132963 TGTGAGGTGGTTGTCTTAACT
1 TGTGAGGTGGTTGTCTTAACT
*
132984 TGTGATGTGGTTGTCTTAACT
1 TGTGAGGTGGTTGTCTTAACT
*
133005 TATGAG
1 TGTGAG
133011 AAGGCTAGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.17, C:0.09, G:0.30, T:0.43
Consensus pattern (21 bp):
TGTGAGGTGGTTGTCTTAACT
Found at i:133582 original size:18 final size:17
Alignment explanation
Indices: 133555--133590 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
133545 CAATTTTTTT
133555 ATTTTAATTAAAATTAAC
1 ATTTTAATTAAAA-TAAC
*
133573 ATTTTTATTAAAATAAC
1 ATTTTAATTAAAATAAC
133590 A
1 A
133591 AAATACGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTTTAATTAAAATAAC
Found at i:137488 original size:2 final size:2
Alignment explanation
Indices: 137476--137522 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
137466 TAAAGGCGAT
137476 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
137517 TA TA TA
1 TA TA TA
137523 CAATAAAGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:139138 original size:3 final size:3
Alignment explanation
Indices: 139130--139177 Score: 78
Period size: 3 Copynumber: 15.7 Consensus size: 3
139120 ATCTACAAAC
*
139130 TCT TCT TCT TCT TCT TCT TCCT TCT TCT TCT TCT TCT TCT TCC TCT
1 TCT TCT TCT TCT TCT TCT T-CT TCT TCT TCT TCT TCT TCT TCT TCT
139176 TC
1 TC
139178 CCGTATCTCC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:140763 original size:31 final size:31
Alignment explanation
Indices: 140678--140771 Score: 109
Period size: 32 Copynumber: 3.0 Consensus size: 31
140668 AGTCGAGGGT
*
140678 TTACCTATGTTCTACGGAACATATGGACAGAA
1 TTACCTATGTT-TACGGAACATATGGACAGTA
* * *
140710 TTAACTATGTCTTTCGGGACATATGGACAGTA
1 TTACCTATGT-TTACGGAACATATGGACAGTA
*
140742 -TACCTATGTTATAAGGAACATATGGACAGT
1 TTACCTATGTT-TACGGAACATATGGACAGT
140772 TGCCGAGGTT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
30 1 0.02
31 24 0.46
32 26 0.50
33 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (31 bp):
TTACCTATGTTTACGGAACATATGGACAGTA
Found at i:142022 original size:21 final size:21
Alignment explanation
Indices: 141998--142038 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
141988 AAGTCATATG
*
141998 TAAGTCTTTCGAGCAAGATGA
1 TAAGTCCTTCGAGCAAGATGA
* *
142019 TAAGTCCTTCGGGCAGGATG
1 TAAGTCCTTCGAGCAAGATG
142039 TTTTCACATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (21 bp):
TAAGTCCTTCGAGCAAGATGA
Found at i:142219 original size:42 final size:42
Alignment explanation
Indices: 142158--142237 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
142148 ACTTAGTAAG
* *
142158 TCCTTTGGGCCATCAGTAAGCCTTTCGAGCATGATGATTAAA
1 TCCTTTAGGCCATCAGTAAGCCTTTCGAGCAAGATGATTAAA
* * *
142200 TCCTTTAGGTCATCTGTAAGTCTTTCGAGCAAGATGAT
1 TCCTTTAGGCCATCAGTAAGCCTTTCGAGCAAGATGAT
142238 AAGTCATTCG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
TCCTTTAGGCCATCAGTAAGCCTTTCGAGCAAGATGATTAAA
Found at i:142229 original size:218 final size:220
Alignment explanation
Indices: 141830--142250 Score: 625
Period size: 218 Copynumber: 1.9 Consensus size: 220
141820 CTATTAAGTG
*
141830 ATTTAAAAAAAATGAGAAAACGATTTCCAAAGTTTCTCATTTAAATCTTTTCTGAAAATGAGATT
1 ATTTAAAAAAAATGAGAAAACGATTTCCAAAGTTTCTCATTTAAATCTTTTCAGAAAATGAGATT
* *
141895 TTCAAAAAGTAAGAAAATGATTTCCAAAGTTTCTTACTTAGTAAGTCATTCGGGCCATTAGTAAG
66 TTCAAAAAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAGTAAGTCATTCGGGCCATCAGTAAG
* *
141960 TCTTTTGAGCATGATGATTAAATCCTTCAAGTCATATGTAAGTCTTTCGAGCAAGATGATAAGTC
131 CCTTTCGAGCATGATGATTAAATCCTTCAAGTCATATGTAAGTCTTTCGAGCAAGATGATAAGTC
*
142025 CTTCGGGCAGGATGTTTTCACATGA
196 ATTCGGGCAGGATGTTTTCACATGA
* * * *
142050 ATTTCAAAAAAA-GAGAAAGCGATTTCCAAAGTTTCTCATTTAGTAT-TTTT-AGAAAGTG-GAA
1 ATTTAAAAAAAATGAGAAAACGATTTCCAAAGTTTCTCATTTA-AATCTTTTCAGAAAATGAG-A
** * * * *
142111 TTTTTGAAAAGTAAGAAAGCGATTTCCAATGTTTCTTACTTAGTAAGTCCTTTGGGCCATCAGTA
64 TTTTCAAAAAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAGTAAGTCATTCGGGCCATCAGTA
* * *
142176 AGCCTTTCGAGCATGATGATTAAATCCTTTAGGTCATCTGTAAGTCTTTCGAGCAAGATGATAAG
129 AGCCTTTCGAGCATGATGATTAAATCCTTCAAGTCATATGTAAGTCTTTCGAGCAAGATGATAAG
142241 TCATTCGGGC
194 TCATTCGGGC
142251 CATCCGTAAG
Statistics
Matches: 180, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
217 1 0.01
218 133 0.74
219 33 0.18
220 13 0.07
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (220 bp):
ATTTAAAAAAAATGAGAAAACGATTTCCAAAGTTTCTCATTTAAATCTTTTCAGAAAATGAGATT
TTCAAAAAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAGTAAGTCATTCGGGCCATCAGTAAG
CCTTTCGAGCATGATGATTAAATCCTTCAAGTCATATGTAAGTCTTTCGAGCAAGATGATAAGTC
ATTCGGGCAGGATGTTTTCACATGA
Found at i:142771 original size:255 final size:253
Alignment explanation
Indices: 142153--142773 Score: 906
Period size: 255 Copynumber: 2.4 Consensus size: 253
142143 TTCTTACTTA
* *
142153 GTAAGTCCTTTGGGCCATCAGTAAGCCTTTCGAGCATGATGATTAAATCCTTTAGGTCATCTGTA
1 GTAAGTCCTTCGGGCCATCAGTAAGCCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTA
* * *
142218 AGTCTTTCGAGCAAGATGATAAGTCATTCGGGCCATCCGTAAGATCTTCGGGTAGGATGTTTTCA
66 AGTCTTTCGAGCAAGATGATAAGTCTTTTGGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTCA
* *
142283 CATGAATTTGAAAAATGGGAAAACAATTTTCAATTTCATTTAATATTTTCAGAAAATGAAATTTT
131 CATGAATTTGAAAAATGGGAAAACAATTTCCAATTTCATTTAATATGTTCAGAAAATGAAATTTT
* * * *
142348 TTAAGAGTAAGAAAGTGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAGTTG
196 TGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTG
* *
142406 GTAAGTCCTTCGAGCCATCAGTAAGCCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTATA
1 GTAAGTCCTTCGGGCCATCAGTAAGCCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTA
* * * *
142471 AGTCTTTCGAACGAGATAATGAGT-TATTTGGGCCATCCGTAAGACCTTCGGGTAGGATG-TTTC
66 AGTCTTTCGAGCAAGATGATAAGTCT-TTTGGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTC
* *
142534 ACATGAATTTGAAAAATGGGAAAGCAATTTCCAAAGTTTCTCATTTAGTATGTTCAGAAAATGAA
130 ACATGAATTTGAAAAATGGGAAAACAATTTCC-AA--TT-TCATTTAATATGTTCAGAAAATGAA
*
142599 A-TTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAGACTATTTCCAAAATTG
191 ATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTG
* * * * * *
142661 GTAAGTTCTTCGGGCCATCAGTAAGTCTTTCGAGTATGATGATTAAATCATTCGGGTCATCTGTT
1 GTAAGTCCTTCGGGCCATCAGTAAGCCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTA
* * **
142726 AGTCTTTCGAGCAAGATGATAAGTCTTTTAGGCTATCTATAAGACCTT
66 AGTCTTTCGAGCAAGATGATAAGTCTTTTGGGCCATCCGTAAGACCTT
142774 TGGTCAAGAT
Statistics
Matches: 326, Mismatches: 36, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
252 34 0.10
253 114 0.35
255 153 0.47
256 25 0.08
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (253 bp):
GTAAGTCCTTCGGGCCATCAGTAAGCCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTA
AGTCTTTCGAGCAAGATGATAAGTCTTTTGGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTCA
CATGAATTTGAAAAATGGGAAAACAATTTCCAATTTCATTTAATATGTTCAGAAAATGAAATTTT
TGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTG
Found at i:143140 original size:44 final size:45
Alignment explanation
Indices: 143092--143214 Score: 158
Period size: 44 Copynumber: 2.8 Consensus size: 45
143082 TGTTGTTATT
* **
143092 CTTGACTTTTTCGTGAAGAGAAGTCAATCTTTCAATATTGTC-AA
1 CTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCAATATTACCTAA
* * * * **
143136 CTTGACTTTCTCGTGAAGATAAGTCAATCTTTTAGTGTTACCTTT
1 CTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCAATATTACCTAA
143181 CTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCA
1 CTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCA
143215 GTGTTGTGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
44 35 0.52
45 32 0.48
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (45 bp):
CTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCAATATTACCTAA
Found at i:143185 original size:89 final size:90
Alignment explanation
Indices: 143069--143262 Score: 259
Period size: 89 Copynumber: 2.2 Consensus size: 90
143059 TTGAAAGAGG
** *
143069 AGTCAATC-TTTAGTGTTGTTATTCTTGACTTTTTCGTGAAGAGAAGTCAATCTTTCAATATTGT
1 AGTCAATCTTTTAGTGTTCCTATTCTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCAATATTGT
* *
143133 CA-ACTTGACTTTCTCGTGAAGATA
66 CATACTTGACTTTCTCATAAAGATA
* *
143157 AGTCAATCTTTTAGTGTTACCT-TTCTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCAGTGTTG
1 AGTCAATCTTTTAGTGTT-CCTATTCTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCAATATTG
* * *
143221 TGATTCTTGACTTTCTCATAAAGATG
65 TCATACTTGACTTTCTCATAAAGATA
*
143247 AGTCAACCTTTTAGTG
1 AGTCAATCTTTTAGTG
143263 ATGTCATTCT
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
88 8 0.09
89 50 0.54
90 34 0.37
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.42
Consensus pattern (90 bp):
AGTCAATCTTTTAGTGTTCCTATTCTTGACTTTCTCGTGAAGAGAAGTCAATCTTTCAATATTGT
CATACTTGACTTTCTCATAAAGATA
Found at i:143198 original size:45 final size:45
Alignment explanation
Indices: 143063--143272 Score: 212
Period size: 45 Copynumber: 4.7 Consensus size: 45
143053 AACATATTGA
* *
143063 AAGAGGAGTCAATC-TTTAGTGTTGT-TATTCTTGACTTTTTCGTG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCT-TTCTTGACTTTCTCGTG
* * * **
143107 AAGAGAAGTCAATCTTTCAATATTGTC-AACTTGACTTTCTCGTG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCTTTCTTGACTTTCTCGTG
* **
143151 AAGATAAGTCAATCTTTTAGTGTTACCTTTCTTGACTTTCTCGTG
1 AAGAGAAGTCAATCTTTTAGTGTTGTCTTTCTTGACTTTCTCGTG
* ** * *
143196 AAGAGAAGTCAATCTTTCAGTGTTGTGATTCTTGACTTTCTCATA
1 AAGAGAAGTCAATCTTTTAGTGTTGTCTTTCTTGACTTTCTCGTG
* * *
143241 AAGATG-AGTCAACCTTTTAGTGATGTCATTCT
1 AAGA-GAAGTCAATCTTTTAGTGTTGTCTTTCT
143273 CAACTTGACT
Statistics
Matches: 135, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
44 48 0.36
45 86 0.64
46 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (45 bp):
AAGAGAAGTCAATCTTTTAGTGTTGTCTTTCTTGACTTTCTCGTG
Found at i:143380 original size:51 final size:49
Alignment explanation
Indices: 143226--143388 Score: 168
Period size: 50 Copynumber: 3.2 Consensus size: 49
143216 TGTTGTGATT
*** *
143226 CTTGACTTTCTCATAAAGATGAGTCAACCTTTT-AGTGATGTCATTCTCAA
1 CTTGACTTTCTCACGGAGATGAGTCAA-CTTTTCAGTG-TATCATTCTCAA
* * * *
143276 CTTGACTTTCTCATGGAGAGGAGTCAAC-TTTCAGTTGTAACCTTTCTCAA
1 CTTGACTTTCTCACGGAGATGAGTCAACTTTTCAG-TGT-ATCATTCTCAA
**
143326 CTTGACTTTCTTGCGGAGATGAGTCAACTTTTCAGTAGTATCATTCCTCAA
1 CTTGACTTTCTCACGGAGATGAGTCAACTTTTCAGT-GTATCATT-CTCAA
143377 CTTGACTTTCTC
1 CTTGACTTTCTC
143389 GTGTAGAGAA
Statistics
Matches: 94, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
48 3 0.03
49 4 0.04
50 63 0.67
51 24 0.26
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (49 bp):
CTTGACTTTCTCACGGAGATGAGTCAACTTTTCAGTGTATCATTCTCAA
Found at i:143402 original size:51 final size:49
Alignment explanation
Indices: 143226--143409 Score: 167
Period size: 50 Copynumber: 3.6 Consensus size: 49
143216 TGTTGTGATT
* ** *
143226 CTTGACTTTCTCATAAAGATGAGTCAACCTTTT-AGT-GATGTCATTCTCAA
1 CTTGACTTTCTCGTGGAGA-GAGTCAA-CTTTTCAGTAG-TATCATTCTCAA
* * * *
143276 CTTGACTTTCTCATGGAGAGGAGTCAAC-TTTCAGTTGTAACCTTTCTCAA
1 CTTGACTTTCTCGTGGAGA-GAGTCAACTTTTCAGTAGT-ATCATTCTCAA
* *
143326 CTTGACTTTCTTGCGGAGATGAGTCAACTTTTCAGTAGTATCATTCCTCAA
1 CTTGACTTTCTCGTGGAGA-GAGTCAACTTTTCAGTAGTATCATT-CTCAA
*
143377 CTTGACTTTCTCGTGTAGAGAAGTCAATCTTTT
1 CTTGACTTTCTCGTGGAGAG-AGTCAA-CTTTT
143410 TGTAATGTTG
Statistics
Matches: 111, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
48 3 0.03
49 5 0.05
50 62 0.56
51 36 0.32
52 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (49 bp):
CTTGACTTTCTCGTGGAGAGAGTCAACTTTTCAGTAGTATCATTCTCAA
Found at i:144259 original size:134 final size:133
Alignment explanation
Indices: 144061--144443 Score: 486
Period size: 134 Copynumber: 2.9 Consensus size: 133
144051 AGAGCAGGGA
*
144061 AGCATATTCTTCTTCTTTCAGATTTGGTCTTCTTGAAGAGCAGTGAAGCAAATTACAG-TCGATT
1 AGCATATTCTTCTTCTTTCAGATTTGGTCTTCATGAAGAGCAGTGAAGCAAA-T-CAGTTCGATT
* * *
144125 CAATATTCCCTGAAGAGTAGTAAAATGGATCAAAGTTTTCTCGAGTCTGATCTCCCCTAAAGAGT
64 CAATCTTCCCTGAAGAGCAGTAAAATGGATCAAAATTTTCTCGAGTCTGATCTCCCCTAAAGAGT
144190 AGTAG
129 AGTAG
* * * *
144195 AGCATATTCTTCTACTTTGAGATTTGGTCTTCCTGAAGA-CTAGGGAAGCAAATCATGTTCGATT
1 AGCATATTCTTCTTCTTTCAGATTTGGTCTTCATGAAGAGC-AGTGAAGCAAATCA-GTTCGATT
* * *
144259 CAATCTTCCTTGAAGAGCAGTGAAGTGGATCAAAATTTTCTCGAGTCTGATCTCCCCTAAAGAGT
64 CAATCTTCCCTGAAGAGCAGTAAAATGGATCAAAATTTTCTCGAGTCTGATCTCCCCTAAAGAGT
*
144324 AGTGG
129 AGTAG
* * * *
144329 AGCAGATTCTTTTTCTTTTAGATTTAGTCTTCATGAAGAGCAGTGAAGCAAATCAAGTTCGATTC
1 AGCATATTCTTCTTCTTTCAGATTTGGTCTTCATGAAGAGCAGTGAAGCAAATC-AGTTCGATTC
* * * * *
144394 AATCTTCCCTTACGAACA-TAGAAGTGAATCAAAATTTT-TCGAGATCTGAT
65 AATCTTCCCTGAAGAGCAGTA-AAATGGATCAAAATTTTCTCGAG-TCTGAT
144444 TACTCGAAAG
Statistics
Matches: 218, Mismatches: 24, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
132 2 0.01
133 9 0.04
134 205 0.94
135 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (133 bp):
AGCATATTCTTCTTCTTTCAGATTTGGTCTTCATGAAGAGCAGTGAAGCAAATCAGTTCGATTCA
ATCTTCCCTGAAGAGCAGTAAAATGGATCAAAATTTTCTCGAGTCTGATCTCCCCTAAAGAGTAG
TAG
Found at i:144643 original size:21 final size:20
Alignment explanation
Indices: 144612--144652 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
144602 TCATCCAGGG
144612 ATTTTTATTTTATTTATTTT
1 ATTTTTATTTTATTTATTTT
144632 ATTTTTAGTTTTATTTATTTT
1 ATTTTTA-TTTTATTTATTTT
144653 TGGTCTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (20 bp):
ATTTTTATTTTATTTATTTT
Found at i:148064 original size:2 final size:2
Alignment explanation
Indices: 148057--148083 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
148047 AATTAGTCAT
148057 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
148084 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:148797 original size:56 final size:56
Alignment explanation
Indices: 148697--148809 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 56
148687 ATTAATTAAT
* * * * *
148697 CGACTAGGTACCGATTTAGGGTGCTGTGGGGGTGCTAATTCTTCCCTACGCGTAAC
1 CGACTAGGTACCGATTTAGGGCGCTGTGAGAGTGCTAATTCTTCCCCAAGCGTAAC
* *
148753 CGACTAGGTACCGATTTATGGCGCTGTGAGAGTG-TTATTCCTTCCCCAAGCGTAAC
1 CGACTAGGTACCGATTTAGGGCGCTGTGAGAGTGCTAATT-CTTCCCCAAGCGTAAC
148809 C
1 C
148810 AACTCTCGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
55 4 0.08
56 45 0.92
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.28
Consensus pattern (56 bp):
CGACTAGGTACCGATTTAGGGCGCTGTGAGAGTGCTAATTCTTCCCCAAGCGTAAC
Found at i:157810 original size:22 final size:21
Alignment explanation
Indices: 157784--157827 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
157774 TTATATAATT
* *
157784 AAATATCTAATACTTTTTTAAA
1 AAATATATAATA-TTTTTCAAA
157806 AAATATATAATATTTTTCAAA
1 AAATATATAATATTTTTCAAA
157827 A
1 A
157828 TATTTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (21 bp):
AAATATATAATATTTTTCAAA
Found at i:163775 original size:34 final size:32
Alignment explanation
Indices: 163724--163791 Score: 91
Period size: 34 Copynumber: 2.1 Consensus size: 32
163714 GTTAATTTTT
*
163724 TAATTTTTGTTTAAATTTAATATAAATATTTA
1 TAATTTTTGTTTAAATTTAATATAAATATATA
* *
163756 TAATTATTTGATTTCAATTTAATATATATATATA
1 TAATT-TTTG-TTTAAATTTAATATAAATATATA
163790 TA
1 TA
163792 TATATATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 5 0.16
33 4 0.13
34 22 0.71
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (32 bp):
TAATTTTTGTTTAAATTTAATATAAATATATA
Found at i:163784 original size:2 final size:2
Alignment explanation
Indices: 163777--163804 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
163767 TTTCAATTTA
163777 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
163805 TTCACCATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:164353 original size:19 final size:20
Alignment explanation
Indices: 164316--164353 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
164306 ATTTTAAAAT
* *
164316 AAAATAATATTAATTTTATA
1 AAAATAATATAAATATTATA
164336 AAAAT-ATATAAATATTAT
1 AAAATAATATAAATATTAT
164354 TTATTTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAATAATATAAATATTATA
Found at i:166659 original size:18 final size:18
Alignment explanation
Indices: 166636--166685 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
166626 GGAGTCTTGG
166636 AGTGATGAAGATGACTCC
1 AGTGATGAAGATGACTCC
*
166654 AGTGATGAAGCTGACTCC
1 AGTGATGAAGATGACTCC
* *
166672 AATTATGAAGATGA
1 AGTGATGAAGATGA
166686 AGTAGCCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (18 bp):
AGTGATGAAGATGACTCC
Found at i:166892 original size:19 final size:19
Alignment explanation
Indices: 166865--166916 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
166855 GTTGAAAATT
*
166865 ATTTTATTTTGAAAGCAAA
1 ATTTGATTTTGAAAGCAAA
166884 ATTTGATTTTGAAAGCAAA
1 ATTTGATTTTGAAAGCAAA
166903 ATTTGATTTTGAAA
1 ATTTGATTTTGAAA
166917 ATCAAAATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.42
Consensus pattern (19 bp):
ATTTGATTTTGAAAGCAAA
Found at i:169102 original size:15 final size:15
Alignment explanation
Indices: 169082--169142 Score: 68
Period size: 15 Copynumber: 3.9 Consensus size: 15
169072 CTTCAAATCC
169082 CAACAATAATAATAA
1 CAACAATAATAATAA
*
169097 CAACAACAATAATAA
1 CAACAATAATAATAA
*
169112 CAACAACGGTAATGATAA
1 CAACAA---TAATAATAA
*
169130 CAATAATAATAAT
1 CAACAATAATAAT
169143 TTTGAGTGCG
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 26 0.68
18 12 0.32
ACGTcount: A:0.61, C:0.15, G:0.05, T:0.20
Consensus pattern (15 bp):
CAACAATAATAATAA
Found at i:169105 original size:18 final size:18
Alignment explanation
Indices: 169082--169118 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
169072 CTTCAAATCC
*
169082 CAACAATAATAATAACAA
1 CAACAATAATAACAACAA
169100 CAACAATAATAACAACAA
1 CAACAATAATAACAACAA
169118 C
1 C
169119 GGTAATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.65, C:0.22, G:0.00, T:0.14
Consensus pattern (18 bp):
CAACAATAATAACAACAA
Found at i:171299 original size:13 final size:14
Alignment explanation
Indices: 171281--171310 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
171271 AGTTAGACAA
171281 TCTTCATATGCA-G
1 TCTTCATATGCACG
171294 TCTTCATATGCACG
1 TCTTCATATGCACG
171308 TCT
1 TCT
171311 GTAATGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (14 bp):
TCTTCATATGCACG
Found at i:176810 original size:55 final size:55
Alignment explanation
Indices: 176721--177438 Score: 1014
Period size: 55 Copynumber: 13.3 Consensus size: 55
176711 GGAGAATAGA
** * * * *
176721 ACTCGAAC-ATCTTCAAAAATCGCGTCAGCTCCCTAGTCCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
*
176775 ACTCGAACAATCTTCAACGATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* **
176830 AC-C-CACAATCTTCAATAATCGCGTCTGCCCCCTATTT-TTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * *
176882 ACTCGAACAATCTTTATCAATCGCGTCTGCCCCCTATTTCTTCATAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
176937 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * *
176992 AC-C-CACAATC-TCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
*
177044 ACTCGAACAATCTTCATCGATCGCGTCT-CCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * *
177098 AC-C-CACAATCTTCATCAATCGCGTATGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
177151 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * *
177206 AC-C-CACAATCTTCAACGATCACTTCTGCCCTCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * * *
177259 AC-C-CACAATCTTCATCAATCGCATATGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
*
177312 ACTCGAACAATCTTCAACGATTGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * *
177367 ACCCAAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATGAG
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
*
177422 ACACGAACAATCTTCAA
1 ACTCGAACAATCTTCAA
177439 TTGCTTCACT
Statistics
Matches: 598, Mismatches: 54, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
52 79 0.13
53 162 0.27
54 77 0.13
55 280 0.47
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.28
Consensus pattern (55 bp):
ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
Found at i:176875 original size:107 final size:109
Alignment explanation
Indices: 176721--177438 Score: 1008
Period size: 107 Copynumber: 6.7 Consensus size: 109
176711 GGAGAATAGA
** * * * *
176721 ACTCGAAC-ATCTTCAAAAATCGCGTCAGCTCCCTAGTCCTTCAGAGAGTATAAGACTCGAACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGAC-CGAACAA
* *
176785 TCTTCAACGATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
65 TCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* **
176830 AC-C-CACAATCTTCAATAATCGCGTCTGCCCCCTATTT-TTCAGAGAGTATAAGACTCGAACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGAC-CGAACAA
* * *
176892 TCTTTATCAATCGCGTCTGCCCCCTATTTCTTCATAGAGTATAAG
65 TCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
*
176937 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACC-CACAAT
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACCGAACAAT
*
177001 C-TCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
66 CTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* *
177044 ACTCGAACAATCTTCATCGATCGCGTCT-CCCCCTATTTCTTCAGAGAGTATAAGACC-CACAAT
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACCGAACAAT
* *
177107 CTTCATCAATCGCGTATGCCCCCTATTTCTTCAGAGAGTATAAG
66 CTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
*
177151 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACC-CACAAT
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACCGAACAAT
* * * *
177215 CTTCAACGATCACTTCTGCCCTCTATTTCTTCAGAGAGTATAAG
66 CTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * * *
177259 AC-C-CACAATCTTCATCAATCGCATATGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGAC-CGAACAA
* *
177322 TCTTCAACGATTGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
65 TCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * *
177367 ACCCAAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATGAGACACGAACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGAC-CGAACAA
177432 TCTTCAA
65 TCTTCAA
177439 TTGCTTCACT
Statistics
Matches: 556, Mismatches: 43, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
106 83 0.15
107 206 0.37
108 155 0.28
109 35 0.06
110 77 0.14
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.28
Consensus pattern (109 bp):
ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACCGAACAAT
CTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
Found at i:177163 original size:161 final size:163
Alignment explanation
Indices: 176721--177438 Score: 1006
Period size: 161 Copynumber: 4.4 Consensus size: 163
176711 GGAGAATAGA
** * * * *
176721 ACTCGAAC-ATCTTCAAAAATCGCGTCAGCTCCCTAGTCCTTCAGAGAGTATAAGACTCGAACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAA
* * * * *
176785 TCTTCAACGATCGTGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACCCACAATCTTCAATAATC
66 TCTTCAACAATCGCGTATGCCCCCTATTTCTTCAGAGAGTATAAGACCAACAATCTTCAACAATC
176850 GCGTCTGCCCCCTATTT-TTCAGAGAGTATAAG
131 GCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * *
176882 ACTCGAACAATCTTTATCAATCGCGTCTGCCCCCTATTTCTTCATAGAGTATAAGACTCGAACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAA
* * * *
176947 TCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACCCACAATC-TCATCAATC
66 TCTTCAACAATCGCGTATGCCCCCTATTTCTTCAGAGAGTATAAGACCAACAATCTTCAACAATC
177011 GCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
131 GCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* *
177044 ACTCGAACAATCTTCATCGATCGCGTCT-CCCCCTATTTCTTCAGAGAGTATAAGAC-C-CACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAA
* *
177106 TCTTCATCAATCGCGTATGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACGA
66 TCTTCAACAATCGCGTATGCCCCCTATTTCTTCAGAGAGTATAAGAC-C-AACAATCTTCAACAA
177171 TCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
129 TCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * * *
177206 AC-C-CACAATCTTCAACGATCACTTCTGCCCTCTATTTCTTCAGAGAGTATAAGAC-C-CACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAA
* * *
177267 TCTTCATCAATCGCATATGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTTCAACGA
66 TCTTCAACAATCGCGTATGCCCCCTATTTCTTCAGAGAGTATAAGAC-C-AACAATCTTCAACAA
*
177332 TTGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
129 TCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
* * * *
177367 ACCCAAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATGAGACACGAACAA
1 ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAA
177432 TCTTCAA
66 TCTTCAA
177439 TTGCTTCACT
Statistics
Matches: 512, Mismatches: 35, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
159 48 0.09
160 21 0.04
161 199 0.39
162 186 0.36
163 47 0.09
164 1 0.00
165 10 0.02
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.28
Consensus pattern (163 bp):
ACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAA
TCTTCAACAATCGCGTATGCCCCCTATTTCTTCAGAGAGTATAAGACCAACAATCTTCAACAATC
GCGTCTGCCCCCTATTTCTTCAGAGAGTATAAG
Found at i:179928 original size:5 final size:5
Alignment explanation
Indices: 179918--179985 Score: 73
Period size: 5 Copynumber: 12.4 Consensus size: 5
179908 ATTTTCAATT
179918 TTTTC TTTTC TTTTC TTTCTTC TTTTC TTTTC TTTCTTC TTTTC TTTTCC
1 TTTTC TTTTC TTTTC -TT-TTC TTTTC TTTTC -TT-TTC TTTTC TTTT-C
*
179968 TTTTC TCTTC TTTCTC TT
1 TTTTC TTTTC TTT-TC TT
179986 CATAATGACA
Statistics
Matches: 55, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
5 32 0.58
6 17 0.31
7 6 0.11
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:179940 original size:12 final size:11
Alignment explanation
Indices: 179917--179973 Score: 64
Period size: 12 Copynumber: 5.1 Consensus size: 11
179907 CATTTTCAAT
179917 TTTTTCTTTTC
1 TTTTTCTTTTC
179928 -TTTTC-TTTC
1 TTTTTCTTTTC
179937 TTCTTTTCTTTTC
1 -T-TTTTCTTTTC
179950 TTTCTTCTTTTC
1 TTT-TTCTTTTC
*
179962 TTTTCCTTTTC
1 TTTTTCTTTTC
179973 T
1 T
179974 CTTCTTTCTC
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
9 4 0.10
10 5 0.12
11 10 0.25
12 17 0.43
13 4 0.10
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:179942 original size:17 final size:17
Alignment explanation
Indices: 179920--179985 Score: 98
Period size: 17 Copynumber: 3.9 Consensus size: 17
179910 TTTCAATTTT
179920 TTCTTTTCTTTTCTTTC
1 TTCTTTTCTTTTCTTTC
179937 TTCTTTTCTTTTCTTTC
1 TTCTTTTCTTTTCTTTC
*
179954 TTCTTTTCTTTTCCTT-
1 TTCTTTTCTTTTCTTTC
*
179970 TTCTCTTCTTTCTCTT
1 TTCTTTTCTTT-TCTT
179986 CATAATGACA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
16 10 0.22
17 35 0.78
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTCTTTTCTTTTCTTTC
Found at i:179985 original size:22 final size:21
Alignment explanation
Indices: 179918--179985 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 21
179908 ATTTTCAATT
*
179918 TTTTCTTTTCTTTTCTTTCTTC
1 TTTTCTTTTCTCTTCTTTC-TC
179940 TTTTCTTTTCTTTCTTCTTT-TC
1 TTTTCTTTTC--TCTTCTTTCTC
179962 TTTTCCTTTTCTCTTCTTTCTC
1 TTTT-CTTTTCTCTTCTTTCTC
179984 TT
1 TT
179986 CATAATGACA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 8 0.20
22 20 0.49
23 6 0.15
24 7 0.17
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTCTTTTCTCTTCTTTCTC
Found at i:182589 original size:21 final size:21
Alignment explanation
Indices: 182541--182700 Score: 184
Period size: 21 Copynumber: 7.7 Consensus size: 21
182531 TCCATGCGAT
* *
182541 ATGGTCTTCTCGTCTTTACGA
1 ATGGTCTTCTCGTCTTGATGA
*
182562 A-GGTCTTCTCGTCTTTATGA
1 ATGGTCTTCTCGTCTTGATGA
* *
182582 AGGGTCTTCTCATCTTGATGA
1 ATGGTCTTCTCGTCTTGATGA
182603 ATGG-CATTCTCGTCTTGATGA
1 ATGGTC-TTCTCGTCTTGATGA
*
182624 ATGGCCTTCTCGTCTTGATGA
1 ATGGTCTTCTCGTCTTGATGA
*
182645 ATGG-CTTTCTCATCTTGATGA
1 ATGGTC-TTCTCGTCTTGATGA
*
182666 AT-GACATTCTCGTCTTGATGA
1 ATGGTC-TTCTCGTCTTGATGA
*
182687 ATGCTCTTCTCGTC
1 ATGGTCTTCTCGTC
182701 CTTGGTACGA
Statistics
Matches: 123, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
20 22 0.18
21 99 0.80
22 2 0.02
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.41
Consensus pattern (21 bp):
ATGGTCTTCTCGTCTTGATGA
Found at i:186128 original size:30 final size:31
Alignment explanation
Indices: 186081--186171 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
186071 AAATTTTGAA
186081 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
186110 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
186141 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
186172 CCTTAAATTG
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 11 0.18
30 11 0.18
31 38 0.63
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.33
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:193463 original size:26 final size:26
Alignment explanation
Indices: 193407--193468 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
193397 TATATTGTAA
*
193407 TTTTAATTTTTGTTAATGTTTTATTT
1 TTTTAATTTTTGTTAATATTTTATTT
* * *
193433 ATTTAATTTTT-TTATTATTATTTTTT
1 TTTTAATTTTTGTTAATATT-TTATTT
193459 TTTTAATTTT
1 TTTTAATTTT
193469 CAAATTATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 6 0.20
26 24 0.80
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (26 bp):
TTTTAATTTTTGTTAATATTTTATTT
Found at i:194170 original size:185 final size:188
Alignment explanation
Indices: 193854--194227 Score: 718
Period size: 185 Copynumber: 2.0 Consensus size: 188
193844 ACAAATCGTG
193854 CAACCAAGTTCATTTTATGTGGTTGCGTCACCTCGTAGATTTTCATCATGTTGGCACACTCAGTT
1 CAACCAAGTTCATTTTATGTGGTTGCGTCACCTCGTAGA-TTTCATCATGTTGGCACACTCAGTT
193919 GGGGTTTTGCAGTTTTGATATTTATGTGTAGGGAAATGTGTCGATCTATCAACTATCGAAAAAAT
65 GGGGTTTTGCAGTTTTGATATTTATGTGTAGGGAAATGTGTCGATCTATCAACTATCGAAAAAAT
193984 TACTATAAGCGGATGTCTCTTTCTTTTCTAGTCTTGGGTGTGGTATTGCATGCCCTTTT
130 TACTATAAGCGGATGTCTCTTTCTTTTCTAGTCTTGGGTGTGGTATTGCATGCCCTTTT
194043 CAACCAAGTTCATTTTATGTGGTTGCGTCA-CTCGTAGA-TTCATCATGTTGGCACACTCAGTTG
1 CAACCAAGTTCATTTTATGTGGTTGCGTCACCTCGTAGATTTCATCATGTTGGCACACTCAGTTG
194106 GGGTTTTGCAGTTTTGATA-TTATGTGTAGGGAAATGTGTCGATCTATCAACTATCGAAAAAATT
66 GGGTTTTGCAGTTTTGATATTTATGTGTAGGGAAATGTGTCGATCTATCAACTATCGAAAAAATT
194170 ACTATAAGCGGATGTCTCTTTCTTTTCTAGTCTTGGGTGTGGTATTGCATGCCCTTTT
131 ACTATAAGCGGATGTCTCTTTCTTTTCTAGTCTTGGGTGTGGTATTGCATGCCCTTTT
194228 TATGTCCGGT
Statistics
Matches: 185, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
185 103 0.56
186 44 0.24
188 8 0.04
189 30 0.16
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (188 bp):
CAACCAAGTTCATTTTATGTGGTTGCGTCACCTCGTAGATTTCATCATGTTGGCACACTCAGTTG
GGGTTTTGCAGTTTTGATATTTATGTGTAGGGAAATGTGTCGATCTATCAACTATCGAAAAAATT
ACTATAAGCGGATGTCTCTTTCTTTTCTAGTCTTGGGTGTGGTATTGCATGCCCTTTT
Found at i:195448 original size:3 final size:3
Alignment explanation
Indices: 195440--195469 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
195430 TGTCTGCTCC
*
195440 TGA TGA TGA TGA TGA TGA TGA TGC TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
195470 AAGTGAGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:195634 original size:19 final size:19
Alignment explanation
Indices: 195612--195650 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
195602 GTTTACCATC
*
195612 AATTGTAAAGTTTTTATTT
1 AATTATAAAGTTTTTATTT
* *
195631 AATTATAGATTTTTTATTT
1 AATTATAAAGTTTTTATTT
195650 A
1 A
195651 TTTTTTCTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (19 bp):
AATTATAAAGTTTTTATTT
Found at i:195710 original size:17 final size:17
Alignment explanation
Indices: 195690--195722 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
195680 GTTTGAATTA
195690 TTTTTATTATTTAGTTC
1 TTTTTATTATTTAGTTC
*
195707 TTTTTATTTTTTAGTT
1 TTTTTATTATTTAGTT
195723 GTATCATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (17 bp):
TTTTTATTATTTAGTTC
Found at i:196371 original size:35 final size:35
Alignment explanation
Indices: 196325--196394 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
196315 AATCTTAATG
**
196325 GGGTATCAATACTGAAGT-GATAGTATCGGTACCAT
1 GGGTATCAATACCAAAGTGGA-AGTATCGGTACCAT
*
196360 GGGTATTAATACCAAAGTGGAAGTATCGGTACCAT
1 GGGTATCAATACCAAAGTGGAAGTATCGGTACCAT
196395 TCTTGCAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 29 0.94
36 2 0.06
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (35 bp):
GGGTATCAATACCAAAGTGGAAGTATCGGTACCAT
Found at i:197200 original size:42 final size:42
Alignment explanation
Indices: 197122--197208 Score: 102
Period size: 42 Copynumber: 2.1 Consensus size: 42
197112 TCAAGGGTTC
* * * * *
197122 TATGTGGTCCTTCGGGACATATATGTAATCCTTTGGAACATA
1 TATGCGGTACTTCAGGACACATATGTAATCCATTGGAACATA
* * *
197164 TATGCGGTACTTCAGGACACATATTTGATCCATTGGAATATA
1 TATGCGGTACTTCAGGACACATATGTAATCCATTGGAACATA
197206 TAT
1 TAT
197209 ATGGTCCTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (42 bp):
TATGCGGTACTTCAGGACACATATGTAATCCATTGGAACATA
Found at i:197279 original size:24 final size:23
Alignment explanation
Indices: 197229--197280 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
197219 AGGAGAATTC
* *
197229 TATGTGGTCATTCGGGATATTTC
1 TATGTGGTCATTCGGGAAATTTA
197252 TATGTGGTTC-TTCGGGACAATTTA
1 TATGTGG-TCATTCGGGA-AATTTA
197276 TATGT
1 TATGT
197281 CACTCAGTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.19, C:0.12, G:0.25, T:0.44
Consensus pattern (23 bp):
TATGTGGTCATTCGGGAAATTTA
Found at i:201455 original size:24 final size:24
Alignment explanation
Indices: 201403--201459 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
201393 TTTGAAAACT
*
201403 AAAAGAAAACTAAAACAAAAGAAC
1 AAAAGAGAACTAAAACAAAAGAAC
* *
201427 AAAAGAGAAC-AAAACAAGAGAAT
1 AAAAGAGAACTAAAACAAAAGAAC
201450 AGAAAGAGAA
1 A-AAAGAGAA
201460 GTGATGGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 12 0.41
24 17 0.59
ACGTcount: A:0.72, C:0.09, G:0.16, T:0.04
Consensus pattern (24 bp):
AAAAGAGAACTAAAACAAAAGAAC
Found at i:204517 original size:3 final size:3
Alignment explanation
Indices: 204509--204557 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
204499 TGAATCAATA
204509 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
204556 AA
1 AA
204558 AAATGGGCAG
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:206257 original size:2 final size:2
Alignment explanation
Indices: 206250--206274 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
206240 TGAAAATTGA
206250 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
206275 AATTAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:207399 original size:21 final size:21
Alignment explanation
Indices: 207374--207417 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
207364 AGTAAAAAAA
*
207374 TTACTCAAAATATTATTATTT
1 TTACTCAAAATATTAATATTT
*
207395 TTACTTAAAATATTAATATTT
1 TTACTCAAAATATTAATATTT
207416 TT
1 TT
207418 TAATAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TTACTCAAAATATTAATATTT
Found at i:213658 original size:20 final size:19
Alignment explanation
Indices: 213633--213670 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
213623 AAACAAACAT
*
213633 TTAATATATTTACATAAACC
1 TTAATATAGTTACA-AAACC
213653 TTAATATAGTTACAAAAC
1 TTAATATAGTTACAAAAC
213671 ATATCATAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (19 bp):
TTAATATAGTTACAAAACC
Found at i:214306 original size:19 final size:19
Alignment explanation
Indices: 214262--214315 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
214252 AAATCATTAT
214262 CCAGGGGTACAGATT---C
1 CCAGGGGTACAGATTCCCC
214278 CCAGGGGGTACAGATTCCCC
1 CCA-GGGGTACAGATTCCCC
*
214298 CCAGGGGTACCGATTCCC
1 CCAGGGGTACAGATTCCC
214316 TCTTTCTAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 3 0.09
17 12 0.36
19 14 0.42
20 4 0.12
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (19 bp):
CCAGGGGTACAGATTCCCC
Found at i:215561 original size:19 final size:20
Alignment explanation
Indices: 215537--215583 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
215527 AATGATTTTC
*
215537 TTTGAAAACAAAAAT-AGAT
1 TTTGAAAACAAAAATGAAAT
* *
215556 TTTGAAAGCCAAAATGAAAT
1 TTTGAAAACAAAAATGAAAT
215576 TTTGAAAA
1 TTTGAAAA
215584 AGGATTTAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.53, C:0.06, G:0.13, T:0.28
Consensus pattern (20 bp):
TTTGAAAACAAAAATGAAAT
Found at i:216198 original size:17 final size:18
Alignment explanation
Indices: 216165--216199 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
216155 GGTTTTTAAT
216165 GCAAATGATATCTCTCTA
1 GCAAATGATATCTCTCTA
216183 GCAAATGATA-CTCTCTA
1 GCAAATGATATCTCTCTA
216200 ACAATTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (18 bp):
GCAAATGATATCTCTCTA
Found at i:217023 original size:20 final size:20
Alignment explanation
Indices: 216998--217095 Score: 103
Period size: 20 Copynumber: 5.0 Consensus size: 20
216988 TCAGATTGTC
216998 CAGGGGGTACAGATTCCCCT
1 CAGGGGGTACAGATTCCCCT
*
217018 CAGGGGGTACAGATTCCCTT
1 CAGGGGGTACAGATTCCCCT
* * *
217038 TAGGGGGAACAGATTCCCTCC
1 CAGGGGGTACAGATTCCC-CT
*
217059 CA-GGGGTACCGATTCCCC-
1 CAGGGGGTACAGATTCCCCT
*
217077 CA-GGGGAACAGATTTCCCC
1 CAGGGGGTACAGA-TTCCCC
217096 CCCCCCCCGG
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
18 10 0.15
19 7 0.11
20 48 0.73
21 1 0.02
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (20 bp):
CAGGGGGTACAGATTCCCCT
Found at i:217108 original size:26 final size:25
Alignment explanation
Indices: 217073--217121 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
217063 GGTACCGATT
217073 CCCCCAGGGGAACAGATTTCCCCCCC
1 CCCCCAGGGGAACAGA-TTCCCCCCC
* * *
217099 CCCCCGGGGGTACCGATTCCCCC
1 CCCCCAGGGGAACAGATTCCCCC
217122 TAAGAGGTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.14, C:0.51, G:0.22, T:0.12
Consensus pattern (25 bp):
CCCCCAGGGGAACAGATTCCCCCCC
Found at i:220083 original size:19 final size:18
Alignment explanation
Indices: 220039--220086 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
220029 TGTCTTTGTT
220039 TTATA-ATAAATATTAAA
1 TTATATATAAATATTAAA
* *
220056 TTAAAATATAAATGATTGAA
1 TT-ATATATAAAT-ATTAAA
220076 TTATATATAAA
1 TTATATATAAA
220087 AAATAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 2 0.08
18 2 0.08
19 14 0.56
20 7 0.28
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (18 bp):
TTATATATAAATATTAAA
Found at i:222376 original size:2 final size:2
Alignment explanation
Indices: 222369--222404 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
222359 TTTAACACCC
222369 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
222405 GATTAGAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:226273 original size:64 final size:64
Alignment explanation
Indices: 226200--226355 Score: 167
Period size: 64 Copynumber: 2.5 Consensus size: 64
226190 TAATGAAGGT
* * * * *
226200 ATGCATCGATGCACTACTTGTGCATCGGTGCA-TAAAATACATTTGATG-TTTTATTATTAATGG
1 ATGCATCGATGCACTACTTGTGCATCGATGCACT-AAATACATTCGATGTTTTTATT-TAAAAGA
226263 G
64 G
* * * *
226264 ATGCATCGATGCA-TGCCTTATGCATCGATGCACTAATTGCATTCGATGTTTTTATTTAAAAGAG
1 ATGCATCGATGCACT-ACTTGTGCATCGATGCACTAAATACATTCGATGTTTTTATTTAAAAGAG
*
226328 -TGCATCGATGCACTACATGTGCATCGAT
1 ATGCATCGATGCACTACTTGTGCATCGAT
226356 ACACCTTCAA
Statistics
Matches: 76, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
63 24 0.32
64 44 0.58
65 8 0.11
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTGTGCATCGATGCACTAAATACATTCGATGTTTTTATTTAAAAGAG
Found at i:229257 original size:49 final size:49
Alignment explanation
Indices: 229203--229300 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
229193 TCTAAAGCTT
*
229203 AGTGAGGTTTATATTTTGATTTAAGTAATAATAATAATAATAATAATAA
1 AGTGAGGTTTATATTTTGATTTAAATAATAATAATAATAATAATAATAA
229252 AGTGAGGTTTATATTTTGATTTAAATAATAATAATAATAATAATAATAA
1 AGTGAGGTTTATATTTTGATTTAAATAATAATAATAATAATAATAATAA
229301 TAAAGTGTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (49 bp):
AGTGAGGTTTATATTTTGATTTAAATAATAATAATAATAATAATAATAA
Found at i:229283 original size:3 final size:3
Alignment explanation
Indices: 229275--229303 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
229265 TTTTGATTTA
229275 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
229304 AGTGTTAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:229527 original size:18 final size:18
Alignment explanation
Indices: 229501--229553 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
229491 AATTCTAAAT
*
229501 ATTTACAGTTATCAGATG
1 ATTTTCAGTTATCAGATG
229519 ATTTTCAGTTATCAGATG
1 ATTTTCAGTTATCAGATG
229537 ATTTTCAGTTATCAGAT
1 ATTTTCAGTTATCAGAT
229554 AATTACAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (18 bp):
ATTTTCAGTTATCAGATG
Found at i:231920 original size:22 final size:22
Alignment explanation
Indices: 231871--231921 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
231861 CAAAATCAAC
* * *
231871 AGTCAATAATCAACATTTAATG
1 AGTCAACAATCAACAATTAACG
231893 AGTCAACAATCAACAGATTAACG
1 AGTCAACAATCAACA-ATTAACG
231916 A-TCAAC
1 AGTCAAC
231922 GAGTCGATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.24
Consensus pattern (22 bp):
AGTCAACAATCAACAATTAACG
Found at i:244782 original size:12 final size:12
Alignment explanation
Indices: 244765--244789 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
244755 ACAAAGCACC
244765 ATTTGGTGCCTA
1 ATTTGGTGCCTA
244777 ATTTGGTGCCTA
1 ATTTGGTGCCTA
244789 A
1 A
244790 ATTATTTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (12 bp):
ATTTGGTGCCTA
Found at i:249275 original size:10 final size:10
Alignment explanation
Indices: 249260--249288 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
249250 AGAGGAGATG
249260 GAGGAAAGCT
1 GAGGAAAGCT
249270 GAGGAAAGCT
1 GAGGAAAGCT
249280 GAGGAAAGC
1 GAGGAAAGC
249289 GAAGATGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.41, T:0.07
Consensus pattern (10 bp):
GAGGAAAGCT
Found at i:258398 original size:2 final size:2
Alignment explanation
Indices: 258391--258417 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
258381 TAAAATTAAT
258391 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
258418 TTTCTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:262000 original size:21 final size:22
Alignment explanation
Indices: 261970--262010 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
261960 TATTTCTAAA
261970 ATTTTAAAAAA-TTATTTTTGT
1 ATTTTAAAAAATTTATTTTTGT
*
261991 ATTTTTAAAAATTTATTTTT
1 ATTTTAAAAAATTTATTTTT
262011 AATTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
ATTTTAAAAAATTTATTTTTGT
Found at i:262018 original size:22 final size:22
Alignment explanation
Indices: 261971--262017 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
261961 ATTTCTAAAA
*
261971 TTTTAAAAAATTATTTTTGTAT
1 TTTTAAAAAATTATTTTTATAT
*
261993 TTTTAAAAATTTATTTTTA-AT
1 TTTTAAAAAATTATTTTTATAT
262014 TTTT
1 TTTT
262018 TTTTATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTTAAAAAATTATTTTTATAT
Found at i:265964 original size:23 final size:23
Alignment explanation
Indices: 265938--265984 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
265928 AATAATTAAA
265938 TTATAATAAAAGT-ATTAATATTT
1 TTATAAT-AAAGTCATTAATATTT
* *
265961 TTATAATTAAGTCATTGATATTT
1 TTATAATAAAGTCATTAATATTT
265984 T
1 T
265985 CTTATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.51
Consensus pattern (23 bp):
TTATAATAAAGTCATTAATATTT
Found at i:266321 original size:2 final size:2
Alignment explanation
Indices: 266273--266309 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
266263 AAATTATGTG
266273 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
266310 AAATTTTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:266368 original size:28 final size:29
Alignment explanation
Indices: 266294--266368 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
266284 ATATATATAT
*
266294 ATATATATATAATATAAAATTTTATATAAG
1 ATATA-ATATAATATAAAATTTTAGATAAG
266324 ATA-AATATAA-ATAAAATTTTAAGATAA-
1 ATATAATATAATATAAAATTTT-AGATAAG
*
266351 ATATAAT-TAATAAAAAAT
1 ATATAATATAATATAAAAT
266369 AATTAATCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
27 16 0.40
28 20 0.50
29 1 0.03
30 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (29 bp):
ATATAATATAATATAAAATTTTAGATAAG
Found at i:266372 original size:14 final size:15
Alignment explanation
Indices: 266353--266382 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
266343 TAAGATAAAT
266353 ATAATTAAT-AAAAA
1 ATAATTAATCAAAAA
266367 ATAATTAATCAAAAA
1 ATAATTAATCAAAAA
266382 A
1 A
266383 ATTTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (15 bp):
ATAATTAATCAAAAA
Found at i:267939 original size:28 final size:27
Alignment explanation
Indices: 267908--267960 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
267898 TAATAATTGA
* *
267908 TTTTATTCTTCAAATTTTATAAAATTTC
1 TTTTATTC-TAAAATTTTAAAAAATTTC
*
267936 TTTTTTTCTAAAATTTTAAAAAATT
1 TTTTATTCTAAAATTTTAAAAAATT
267961 CGTCTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (27 bp):
TTTTATTCTAAAATTTTAAAAAATTTC
Found at i:274867 original size:31 final size:33
Alignment explanation
Indices: 274810--274883 Score: 86
Period size: 31 Copynumber: 2.4 Consensus size: 33
274800 AATTAAGATT
*
274810 AGAAT-AAAT-TACACATTTTTTAGTTAAAATA
1 AGAATAAAATATACACATTTTATAGTTAAAATA
*
274841 AGAATAAAATATACAC-TTTTAT-GTTAAGATA
1 AGAATAAAATATACACATTTTATAGTTAAAATA
*
274872 A-ATTAAAATATA
1 AGAATAAAATATA
274884 TGTTTTAAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
30 10 0.26
31 14 0.37
32 9 0.24
33 5 0.13
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.36
Consensus pattern (33 bp):
AGAATAAAATATACACATTTTATAGTTAAAATA
Found at i:274879 original size:30 final size:30
Alignment explanation
Indices: 274827--274883 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
274817 ATTACACATT
274827 TTTTAGTTAAAATAAGAATAAAATATACAC
1 TTTTAGTTAAAATAAGAATAAAATATACAC
* *
274857 TTTTATGTTAAGATAA-ATTAAAATATA
1 TTTTA-GTTAAAATAAGAATAAAATATA
274884 TGTTTTAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 15 0.62
31 9 0.38
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTAGTTAAAATAAGAATAAAATATACAC
Found at i:275043 original size:31 final size:31
Alignment explanation
Indices: 275008--275082 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 31
274998 AAAATTACGT
275008 TAAGAGTAAAATATATATTTTTAAGTTAAAA
1 TAAGAGTAAAATATATATTTTTAAGTTAAAA
* *
275039 T-A-AG---AATAAATATTTTTAAGTTAATA
1 TAAGAGTAAAATATATATTTTTAAGTTAAAA
* *
275065 TAAGAATAATATATATAT
1 TAAGAGTAAAATATATAT
275083 ATATATATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
26 21 0.62
27 1 0.03
28 1 0.03
29 2 0.06
30 1 0.03
31 8 0.24
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (31 bp):
TAAGAGTAAAATATATATTTTTAAGTTAAAA
Found at i:275046 original size:26 final size:26
Alignment explanation
Indices: 275017--275078 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 26
275007 TTAAGAGTAA
275017 AATATATATTTTTAAGTTAAAATAAG
1 AATATATATTTTTAAGTTAAAATAAG
* *
275043 AATAAATATTTTTAAGTTAATATAAG
1 AATATATATTTTTAAGTTAAAATAAG
275069 AATAATATAT
1 AAT-ATATAT
275079 ATATATATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 27 0.84
27 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (26 bp):
AATATATATTTTTAAGTTAAAATAAG
Found at i:275295 original size:2 final size:2
Alignment explanation
Indices: 275288--275325 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
275278 TTACCTAAAT
275288 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
275326 AATAGGACTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:276464 original size:14 final size:14
Alignment explanation
Indices: 276447--276473 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
276437 TATTATATAT
276447 ATATATATAATAAC
1 ATATATATAATAAC
276461 ATATATATAATAA
1 ATATATATAATAA
276474 ATGTCACTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATATATAATAAC
Found at i:279174 original size:31 final size:31
Alignment explanation
Indices: 279139--279229 Score: 94
Period size: 32 Copynumber: 2.9 Consensus size: 31
279129 GAAGAACCTA
*
279139 TCCATATGTTCCTAAGAACATAGGTAA-ACTG
1 TCCATATGTTCCAAAG-ACATAGGTAATACTG
* * * *
279170 TCCATATGTCCCGAAGGACATAGGCAATCCTG
1 TCCATATGTTCC-AAAGACATAGGTAATACTG
*
279202 TCCATATGTCTCGAAAGACATAGGTAAT
1 TCCATATGT-TCCAAAGACATAGGTAAT
279230 TTGTCCTTAT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
31 20 0.42
32 27 0.56
33 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (31 bp):
TCCATATGTTCCAAAGACATAGGTAATACTG
Found at i:279241 original size:31 final size:31
Alignment explanation
Indices: 279139--279259 Score: 127
Period size: 31 Copynumber: 3.9 Consensus size: 31
279129 GAAGAACCTA
** *
279139 TCCATATGT-TCCTAAGAACATAGGTAAACTG
1 TCCATATGTCTCGAAAG-ACATAGGTAATCTG
* * *
279170 TCCATATGTCCCGAAGGACATAGGCAATCCTG
1 TCCATATGTCTCGAAAGACATAGGTAAT-CTG
*
279202 TCCATATGTCTCGAAAGACATAGGTAATTTG
1 TCCATATGTCTCGAAAGACATAGGTAATCTG
* * *
279233 TCCTTATGTCTCGGAAGGCATAGGTAA
1 TCCATATGTCTCGAAAGACATAGGTAA
279260 CCCTCGACTC
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
31 44 0.59
32 31 0.41
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (31 bp):
TCCATATGTCTCGAAAGACATAGGTAATCTG
Found at i:284186 original size:32 final size:31
Alignment explanation
Indices: 284116--284236 Score: 156
Period size: 31 Copynumber: 3.9 Consensus size: 31
284106 GAAGGACCTA
* *
284116 TCCATATGTTCC-TAAGAACATAGGTAAAT-TG
1 TCCATATGTCCCGAAAG-ACATAGGT-AATCTG
*
284147 TCCATATGTCCCGAAGGACATAGGTAATCCTG
1 TCCATATGTCCCGAAAGACATAGGTAAT-CTG
*
284179 TCCATATGTCTCGAAAGACATAGGTAATCTG
1 TCCATATGTCCCGAAAGACATAGGTAATCTG
*
284210 TCCATATGTCTCGAAAGACATAGGTAA
1 TCCATATGTCCCGAAAGACATAGGTAA
284237 CCCTCGACTC
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
30 3 0.04
31 49 0.60
32 30 0.37
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (31 bp):
TCCATATGTCCCGAAAGACATAGGTAATCTG
Found at i:284201 original size:63 final size:63
Alignment explanation
Indices: 284116--284236 Score: 174
Period size: 63 Copynumber: 1.9 Consensus size: 63
284106 GAAGGACCTA
* *
284116 TCCATATGTTCCTAAGAACATAGGTAAAT-TGTCCATATGTCCCGAAGGACATAGGTAATCCTG
1 TCCATATGTTCCAAAGAACATAGGT-AATCTGTCCATATGTCCCGAAAGACATAGGTAATCCTG
* *
284179 TCCATATGTCTCGAAAG-ACATAGGTAATCTGTCCATATGTCTCGAAAGACATAGGTAA
1 TCCATATGT-TCCAAAGAACATAGGTAATCTGTCCATATGTCCCGAAAGACATAGGTAA
284237 CCCTCGACTC
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
62 3 0.06
63 44 0.85
64 5 0.10
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (63 bp):
TCCATATGTTCCAAAGAACATAGGTAATCTGTCCATATGTCCCGAAAGACATAGGTAATCCTG
Found at i:288312 original size:4 final size:4
Alignment explanation
Indices: 288303--288329 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
288293 CTTAAGTCTC
288303 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
288330 GTATTATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:291534 original size:638 final size:633
Alignment explanation
Indices: 290349--291616 Score: 1943
Period size: 638 Copynumber: 2.0 Consensus size: 633
290339 TTTATAGAAA
*
290349 GTGACACTTTAGGATTAGTTTTTTAATAGGTTAGTTTAGACAATACTTAGAATTTTGGTTTTTAA
1 GTGACACTTTAGGATTAGTTTTTTAATAGGTTAATTTAGACAATACTTAGAATTTTGGTTTTTAA
* * * * *
290414 TTAGTCCCCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTTGTCTTTTAGAATTTGATA
66 TTAGTCACCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTAGTATTTTAGAACTCGATA
* * *
290479 TTTTAGATCTTAACCTTTTAGTTCCTGAACTTTGATTAGAACTTTAATATTGTCATAATAAAATA
131 TTTTAGATCATAACCTTTTAGTTCCTGAACTTCGATTAGAACTTTAATATTGACATAATAAAATA
* * *
290544 GGTTAAATAGAGCCTTCATTTTTAGCTAGATTTCGATATAGTCTTCTTAATTTAGAGAATAATTC
196 GGTTAAATAGAGCCTTCATTTTTAGCTAGATTTCAATATAATCTTCTTAATTTAGAGAATAATTA
* * *
290609 GAGTTGGCCTCGAATAAATGCTCGAGGGACCATATTGGCTATTCGATTCAATATTTGGTTTAAAA
261 GAGTTGACCTCGAATAAATGCTCGAGGGACCATATCGGCTATTCGATTCAATAATTGGTTTAAAA
* *
290674 ATCAAATAGGGTTAATATTAGAACCTACACTACTAGGTTTGTGCCTTTGGGTTCTTTAACTTTCA
326 ATCAAATAGGGTTAATAGTAGAACCTACACTACTAGGTTTGTGCCTTTAGGTTCTTTAACTTTCA
* * *
290739 CAATTTGACACTTTAGGATAAAGAGAGCCTTAACTAACACTTAGTTAATTAGGACAAATAAGAAT
391 CAATTCGACACTTTAGAATAAAGAGAGCCTTAAATAACACTTAGTTAATTAGGACAAATAAGAAT
* *
290804 TTGTTTGATTGCATTTTATTTTTTAAACCATAAGGCAATGTTCACTTATTACGAAATTATGGTAT
456 TTGTTTGATTGCATTTTATTTTTTAAACCATAAGGCAATGCTCACTTATTACGAAATTATGATAT
* *
290869 ATCTCCCACAAGCATGCTCATGGGGTGACTATTGGTGATTCCCAAAATAGGTCGACATCATTTTC
521 ATCTCCCACAAGCATGCTCAGGGGGTGACTACTGGTGATTCCCAAAATAGGTCGACATCATTTTC
290934 AAAACCGCATCATGATTTCTAAAATTAAGACAATGTCCGATTATTGGG
586 AAAACCGCATCATGATTTCTAAAATTAAGACAATGTCCGATTATTGGG
* * *
290982 GTGACACTTTAGGCTTAGTACTTTTTAGTAGGTTAATTTAGACAATATTTAGAATTTTGGTTTAT
1 GTGACACTTTAGGATTAGT--TTTTTAATAGGTTAATTTAGACAATACTTAGAATTTTGGTTT-T
*
291047 TAATTATTCACCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTAGTATTTTAGAACTCG
63 TAATTAGTCACCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTAGTATTTTAGAACTCG
** ** *
291112 ATATTTTAGATCATGGCCTTTTTTTTCCTCGAACTTCGATTAGAACTTTAATATTGACATAATCA
128 ATATTTTAGATCATAACCTTTTAGTTCCT-GAACTTCGATTAGAACTTTAATATTGACATAATAA
291177 AATAGGTTAAATAGAGCC-TCTATTTTTAGCTAGATTTCAATATAATCTTCTTAATTTAG-GAAA
192 AATAGGTTAAATAGAGCCTTC-ATTTTTAGCTAGATTTCAATATAATCTTCTTAATTTAGAG-AA
* * * * *
291240 TACTTAGAGTTAGACCTCGCATAAATGCTCGAGGGACTATCTCGGCTATTCGATTCAGTAATTGG
255 TAATTAGAGTT-GACCTCGAATAAATGCTCGAGGGACCATATCGGCTATTCGATTCAATAATTGG
* *
291305 TTTAAAAATCAAATAGGGTTAATAGTAGAACCTATACTGCTAGGTTTGTGCCTTTAGGTTCTTTA
319 TTTAAAAATCAAATAGGGTTAATAGTAGAACCTACACTACTAGGTTTGTGCCTTTAGGTTCTTTA
* * *
291370 ACTTTCATAATTCGACACTTTAGAATAGAGAGAGCCTTAAATAACCCTTAGTTAATTAGGACAAA
384 ACTTTCACAATTCGACACTTTAGAATAAAGAGAGCCTTAAATAACACTTAGTTAATTAGGACAAA
291435 TTAA-AATTTGTTTGATTGCATTTTATTTTTT-AACCATAAGGCAATGCTCACTTATTA-GAGAA
449 -TAAGAATTTGTTTGATTGCATTTTATTTTTTAAACCATAAGGCAATGCTCACTTATTACGA-AA
* * * * *
291497 TTAATGATATATCTTCCACACGCATGCTTAGGGGGTGATTACTGGTGATTCCCGAAATAGGTCGA
512 TT-ATGATATATCTCCCACAAGCATGCTCAGGGGGTGACTACTGGTGATTCCCAAAATAGGTCGA
* * * *
291562 CATTATTTTCAAAACCGTATCATGATTTCTAAAATTAAGGCAATGTCTGATTATT
576 CATCATTTTCAAAACCGCATCATGATTTCTAAAATTAAGACAATGTCCGATTATT
291617 AGGCACAATA
Statistics
Matches: 573, Mismatches: 52, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
633 18 0.03
635 39 0.07
636 89 0.16
637 126 0.22
638 298 0.52
639 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (633 bp):
GTGACACTTTAGGATTAGTTTTTTAATAGGTTAATTTAGACAATACTTAGAATTTTGGTTTTTAA
TTAGTCACCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTAGTATTTTAGAACTCGATA
TTTTAGATCATAACCTTTTAGTTCCTGAACTTCGATTAGAACTTTAATATTGACATAATAAAATA
GGTTAAATAGAGCCTTCATTTTTAGCTAGATTTCAATATAATCTTCTTAATTTAGAGAATAATTA
GAGTTGACCTCGAATAAATGCTCGAGGGACCATATCGGCTATTCGATTCAATAATTGGTTTAAAA
ATCAAATAGGGTTAATAGTAGAACCTACACTACTAGGTTTGTGCCTTTAGGTTCTTTAACTTTCA
CAATTCGACACTTTAGAATAAAGAGAGCCTTAAATAACACTTAGTTAATTAGGACAAATAAGAAT
TTGTTTGATTGCATTTTATTTTTTAAACCATAAGGCAATGCTCACTTATTACGAAATTATGATAT
ATCTCCCACAAGCATGCTCAGGGGGTGACTACTGGTGATTCCCAAAATAGGTCGACATCATTTTC
AAAACCGCATCATGATTTCTAAAATTAAGACAATGTCCGATTATTGGG
Found at i:294827 original size:10 final size:10
Alignment explanation
Indices: 294809--294849 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
294799 CCCGGTGAAC
294809 TTTTATTTTG
1 TTTTATTTTG
*
294819 TTTTGTTTTG
1 TTTTATTTTG
*
294829 TTTTATTTTA
1 TTTTATTTTG
294839 TTTTATATTTG
1 TTTTAT-TTTG
294850 CAAAAATTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 23 0.88
11 3 0.12
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (10 bp):
TTTTATTTTG
Found at i:295291 original size:26 final size:23
Alignment explanation
Indices: 295257--295314 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
295247 AATCACCAAA
*
295257 TTTTCAAAATAAATAGTCATAATTGT
1 TTTTTAAAAT-AATA-T-ATAATTGT
*
295283 TTTTTAAAATAATATTTAATTGT
1 TTTTTAAAATAATATATAATTGT
*
295306 TTTGTAAAA
1 TTTTTAAAA
295315 AATGGTTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.52
24 1 0.03
25 4 0.14
26 9 0.31
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.48
Consensus pattern (23 bp):
TTTTTAAAATAATATATAATTGT
Found at i:298967 original size:14 final size:14
Alignment explanation
Indices: 298943--299006 Score: 103
Period size: 14 Copynumber: 4.6 Consensus size: 14
298933 CAATTCCTTG
298943 TTGCA-TTTGCTTC
1 TTGCATTTTGCTTC
298956 TTGCATTTTGCTTC
1 TTGCATTTTGCTTC
298970 TTGCATTTTGCTTC
1 TTGCATTTTGCTTC
*
298984 TTGCATTTTGCTTA
1 TTGCATTTTGCTTC
*
298998 TTGTATTTT
1 TTGCATTTT
299007 ACAGTCCCAT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
13 5 0.10
14 43 0.90
ACGTcount: A:0.09, C:0.17, G:0.14, T:0.59
Consensus pattern (14 bp):
TTGCATTTTGCTTC
Found at i:301417 original size:38 final size:38
Alignment explanation
Indices: 301333--301840 Score: 266
Period size: 38 Copynumber: 13.7 Consensus size: 38
301323 ATTTAATACG
* * *
301333 AAGATTTATCTC-ACTTGAGATTGTTT-TCT-TAAA-AC
1 AAGATTTATCTCGA-TTGAGATAGTTTCACTCGAAACAC
* * * *
301368 AAGACTCATCTCGATTTAGATAGTTTCACTCGAAACAG
1 AAGATTTATCTCGATTGAGATAGTTTCACTCGAAACAC
* * ** *
301406 AAGATTTATCTC-ACTTTAGATTGTTTTTCT-TAAA-AC
1 AAGATTTATCTCGA-TTGAGATAGTTTCACTCGAAACAC
* * *
301442 AAGATTCATCTCGCTTGAGATAGTTTCACTCGAAACAT
1 AAGATTTATCTCGATTGAGATAGTTTCACTCGAAACAC
* * *
301480 AAGCTTTTATCTCGCTTGAGATAGTTTCACTCGAAACAT
1 AAG-ATTTATCTCGATTGAGATAGTTTCACTCGAAACAC
** * ** *
301519 AAGATTTAGATC-ACTTGAGATTGTTTTTC-CTAAA-AC
1 AAGATTTATCTCGA-TTGAGATAGTTTCACTCGAAACAC
* * * *
301555 AAGATTCATC-CTGCTTGAGATAGTTTCACTCAAAACAA
1 AAGATTTATCTC-GATTGAGATAGTTTCACTCGAAACAC
* * ** *
301593 AATATTTATCTC-ACTTGAGATTGTTTTTCT-TAAA-AC
1 AAGATTTATCTCGA-TTGAGATAGTTTCACTCGAAACAC
* * * *
301629 AAGATTCATCTCGCTTGAGATAGTTTCACTTGAAACAG
1 AAGATTTATCTCGATTGAGATAGTTTCACTCGAAACAC
* ** * ** *
301667 AAGATTTATATC-ACTCAAGATTGTTTTTCT-TAAA-AC
1 AAGATTTATCTCGA-TTGAGATAGTTTCACTCGAAACAC
** * * *
301703 AAGATGCATCTCGCTTGAGATAGTTTCACTCGGAACAG
1 AAGATTTATCTCGATTGAGATAGTTTCACTCGAAACAC
* * ** *
301741 AAGATTTAGCTC-ACTTGAGATTGTTTTTCT-TAAA-AC
1 AAGATTTATCTCGA-TTGAGATAGTTTCACTCGAAACAC
** *
301777 AAGATTTATCTCGCCTGAGATAGTTTCACTCGAAACAG
1 AAGATTTATCTCGATTGAGATAGTTTCACTCGAAACAC
*
301815 AAGATTTATCTC-ACTTGAGATTGTTT
1 AAGATTTATCTCGA-TTGAGATAGTTT
301841 TTCTTAAAAC
Statistics
Matches: 344, Mismatches: 101, Indels: 53
0.69 0.20 0.11
Matches are distributed among these distances:
35 21 0.06
36 116 0.34
37 34 0.10
38 136 0.40
39 37 0.11
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (38 bp):
AAGATTTATCTCGATTGAGATAGTTTCACTCGAAACAC
Found at i:301463 original size:74 final size:74
Alignment explanation
Indices: 301332--301506 Score: 262
Period size: 74 Copynumber: 2.4 Consensus size: 74
301322 CATTTAATAC
*
301332 GAAGATTTATCTCACTTGAGATTG-TTTTCTTAAAACAAGACTCATCTCGATTTAGATAGTTTCA
1 GAAGATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAGACTCATCTCGATTGAGATAGTTTCA
301396 CTCGAAACA
66 CTCGAAACA
* * *
301405 GAAGATTTATCTCACTTTAGATTGTTTTTCTTAAAACAAGATTCATCTCGCTTGAGATAGTTTCA
1 GAAGATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAGACTCATCTCGATTGAGATAGTTTCA
301470 CTCGAAACA
66 CTCGAAACA
* * * *
301479 TAAGCTTTTATCTCGCTTGAGATAGTTT
1 GAAG-ATTTATCTCACTTGAGATTGTTT
301507 CACTCGAAAC
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
73 23 0.25
74 49 0.54
75 19 0.21
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (74 bp):
GAAGATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAGACTCATCTCGATTGAGATAGTTTCA
CTCGAAACA
Found at i:301523 original size:22 final size:22
Alignment explanation
Indices: 301459--301523 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
301449 ATCTCGCTTG
301459 AGATAGTTTCACTCGAAACATA
1 AGATAGTTTCACTCGAAACATA
* * *
301481 AGCT--TTT-ATCTCG---CTTG
1 AGATAGTTTCA-CTCGAAACATA
301498 AGATAGTTTCACTCGAAACATA
1 AGATAGTTTCACTCGAAACATA
301520 AGAT
1 AGAT
301524 TTAGATCACT
Statistics
Matches: 30, Mismatches: 6, Indels: 14
0.60 0.12 0.28
Matches are distributed among these distances:
17 5 0.17
19 8 0.27
20 8 0.27
22 9 0.30
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (22 bp):
AGATAGTTTCACTCGAAACATA
Found at i:301585 original size:74 final size:74
Alignment explanation
Indices: 301488--301852 Score: 570
Period size: 74 Copynumber: 4.9 Consensus size: 74
301478 ATAAGCTTTT
* ** *
301488 ATCTCGCTTGAGATAGTTTCACTCGAAACATAAGATTTAGATCACTTGAGATTGTTTTTCCTAAA
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTATCTCACTTGAGATTGTTTTTCTTAAA
301553 ACAAGATTC
66 ACAAGATTC
* * *
301562 ATC-CTGCTTGAGATAGTTTCACTCAAAACAAAATATTTATCTCACTTGAGATTGTTTTTCTTAA
1 ATCTC-GCTTGAGATAGTTTCACTCGAAACAGAAGATTTATCTCACTTGAGATTGTTTTTCTTAA
301626 AACAAGATTC
65 AACAAGATTC
* * **
301636 ATCTCGCTTGAGATAGTTTCACTTGAAACAGAAGATTTATATCACTCAAGATTGTTTTTCTTAAA
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTATCTCACTTGAGATTGTTTTTCTTAAA
*
301701 ACAAGATGC
66 ACAAGATTC
* *
301710 ATCTCGCTTGAGATAGTTTCACTCGGAACAGAAGATTTAGCTCACTTGAGATTGTTTTTCTTAAA
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTATCTCACTTGAGATTGTTTTTCTTAAA
*
301775 ACAAGATTT
66 ACAAGATTC
*
301784 ATCTCGCCTGAGATAGTTTCACTCGAAACAGAAGATTTATCTCACTTGAGATTGTTTTTCTTAAA
1 ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTATCTCACTTGAGATTGTTTTTCTTAAA
301849 ACAA
66 ACAA
301853 ACTACACCTC
Statistics
Matches: 264, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
73 1 0.00
74 262 0.99
75 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (74 bp):
ATCTCGCTTGAGATAGTTTCACTCGAAACAGAAGATTTATCTCACTTGAGATTGTTTTTCTTAAA
ACAAGATTC
Found at i:301948 original size:59 final size:59
Alignment explanation
Indices: 301856--302061 Score: 295
Period size: 59 Copynumber: 3.5 Consensus size: 59
301846 AAAACAAACT
* * *
301856 ACACCTCACTTGAGGGATTAACATTTCATTTGCTCGATTCACAATACTTCGAATCAGCA
1 ACACCTCACTTGAGGGATCAACATTTCCTTTGCTCGATTCACAACACTTCGAATCAGCA
* * *
301915 ACACCTCACTTGAGGGATTAACATTTCCTTTGCTCGATTCACAACACTTCAAATCAGCT
1 ACACCTCACTTGAGGGATCAACATTTCCTTTGCTCGATTCACAACACTTCGAATCAGCA
* * * * *
301974 ACGCCTTACTTGAGGGATCAATATTTCCTTTGCTCGATTCACAACACTTCGAATCAACG
1 ACACCTCACTTGAGGGATCAACATTTCCTTTGCTCGATTCACAACACTTCGAATCAGCA
* *
302033 ACACCTCACATGAGGGACCAACATTTCCT
1 ACACCTCACTTGAGGGATCAACATTTCCT
302062 GTAGAGAATT
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 131 1.00
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (59 bp):
ACACCTCACTTGAGGGATCAACATTTCCTTTGCTCGATTCACAACACTTCGAATCAGCA
Found at i:303085 original size:11 final size:11
Alignment explanation
Indices: 303069--303093 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
303059 AGAGATTTCG
303069 AAAGAAAGAAA
1 AAAGAAAGAAA
303080 AAAGAAAGAAA
1 AAAGAAAGAAA
303091 AAA
1 AAA
303094 AACCCGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:303949 original size:30 final size:30
Alignment explanation
Indices: 303915--304067 Score: 103
Period size: 30 Copynumber: 5.1 Consensus size: 30
303905 GTTTTTAGGC
** *
303915 TAACTTTCTATTTTTGTTGTTCTAGTCCTT
1 TAACTTTCTATTTTTACTATTCTAGTCCTT
* *
303945 TAACTATCTATTTTTACTATTTTAGTCCTT
1 TAACTTTCTATTTTTACTATTCTAGTCCTT
* * * * * *
303975 TAAATTTCTATTTATGCTATTTTAATCCCT
1 TAACTTTCTATTTTTACTATTCTAGTCCTT
* * *
304005 TAAGTTT-TAGTTTTTTCTATTTTAGTCCTTT
1 TAACTTTCTA-TTTTTACTATTCTAGTCC-TT
* * * * *
304036 TAA-TTTTTGTTTTTGCTATTTTAGTCCCT
1 TAACTTTCTATTTTTACTATTCTAGTCCTT
304065 TAA
1 TAA
304068 GTTTTTTTTT
Statistics
Matches: 101, Mismatches: 19, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
29 6 0.06
30 90 0.89
31 5 0.05
ACGTcount: A:0.20, C:0.14, G:0.07, T:0.59
Consensus pattern (30 bp):
TAACTTTCTATTTTTACTATTCTAGTCCTT
Found at i:303985 original size:60 final size:60
Alignment explanation
Indices: 303919--304067 Score: 156
Period size: 60 Copynumber: 2.5 Consensus size: 60
303909 TTAGGCTAAC
* * * *
303919 TTTCTATTTTTGTTGTTCTAGTCCTTTAACTATCTA-TTTTTACTATTTTAGTCCTTTAAA
1 TTTCTATTTTTGCTATTCTAATCCCTTAACT-TCTAGTTTTTACTATTTTAGTCCTTTAAA
* * * * * *
303979 TTTCTATTTATGCTATTTTAATCCCTTAAGTTTTAGTTTTTTCTATTTTAGTCCTTTTAA
1 TTTCTATTTTTGCTATTCTAATCCCTTAACTTCTAGTTTTTACTATTTTAGTCCTTTAAA
* * * *
304039 TTTTTGTTTTTGCTATTTTAGTCCCTTAA
1 TTTCTATTTTTGCTATTCTAATCCCTTAA
304068 GTTTTTTTTT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
59 3 0.04
60 71 0.96
ACGTcount: A:0.19, C:0.14, G:0.07, T:0.60
Consensus pattern (60 bp):
TTTCTATTTTTGCTATTCTAATCCCTTAACTTCTAGTTTTTACTATTTTAGTCCTTTAAA
Found at i:304027 original size:15 final size:15
Alignment explanation
Indices: 304009--304060 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
303999 ATCCCTTAAG
304009 TTTTAGTTTTTTCTA
1 TTTTAGTTTTTTCTA
* *
304024 TTTTAGTCCTTTT-AA
1 TTTTAGT-TTTTTCTA
* *
304039 TTTTTGTTTTTGCTA
1 TTTTAGTTTTTTCTA
304054 TTTTAGT
1 TTTTAGT
304061 CCCTTAAGTT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
14 3 0.11
15 21 0.75
16 4 0.14
ACGTcount: A:0.13, C:0.08, G:0.10, T:0.69
Consensus pattern (15 bp):
TTTTAGTTTTTTCTA
Found at i:304068 original size:60 final size:60
Alignment explanation
Indices: 303955--304072 Score: 182
Period size: 60 Copynumber: 2.0 Consensus size: 60
303945 TAACTATCTA
303955 TTTTTACTATTTTAGTCCTTTAAATTTCTATTTATGCTATTTTAATCCCTTAAGTTTTAG
1 TTTTTACTATTTTAGTCCTTTAAATTTCTATTTATGCTATTTTAATCCCTTAAGTTTTAG
* * * * * *
304015 TTTTTTCTATTTTAGTCCTTTTAATTTTTGTTTTTGCTATTTTAGTCCCTTAAGTTTT
1 TTTTTACTATTTTAGTCCTTTAAATTTCTATTTATGCTATTTTAATCCCTTAAGTTTT
304073 TTTTTAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.19, C:0.13, G:0.08, T:0.61
Consensus pattern (60 bp):
TTTTTACTATTTTAGTCCTTTAAATTTCTATTTATGCTATTTTAATCCCTTAAGTTTTAG
Found at i:304073 original size:30 final size:30
Alignment explanation
Indices: 303955--304077 Score: 133
Period size: 30 Copynumber: 4.1 Consensus size: 30
303945 TAACTATCTA
* * * * *
303955 TTTTTACTATTTTAGTCCTTTAAATTTCTA
1 TTTTTGCTATTTTAGTCCCTTAAGTTTTTG
* * *
303985 TTTATGCTATTTTAATCCCTTAAGTTTTAG
1 TTTTTGCTATTTTAGTCCCTTAAGTTTTTG
* *
304015 TTTTTTCTATTTTAGTCCTTTTAA-TTTTTG
1 TTTTTGCTATTTTAGTCC-CTTAAGTTTTTG
304045 TTTTTGCTATTTTAGTCCCTTAAGTTTTT-
1 TTTTTGCTATTTTAGTCCCTTAAGTTTTTG
304074 TTTT
1 TTTT
304078 AATTTGGTCC
Statistics
Matches: 76, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
29 8 0.11
30 64 0.84
31 4 0.05
ACGTcount: A:0.18, C:0.12, G:0.07, T:0.63
Consensus pattern (30 bp):
TTTTTGCTATTTTAGTCCCTTAAGTTTTTG
Found at i:304379 original size:10 final size:10
Alignment explanation
Indices: 304366--304406 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
304356 GCTTTTGCAC
304366 TTTTATTTTG
1 TTTTATTTTG
*
304376 TTTTGTTTTG
1 TTTTATTTTG
*
304386 TTTTATTTTA
1 TTTTATTTTG
304396 TTTTATATTTG
1 TTTTAT-TTTG
304407 CAAAAATTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 23 0.88
11 3 0.12
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (10 bp):
TTTTATTTTG
Found at i:307377 original size:639 final size:636
Alignment explanation
Indices: 306288--307559 Score: 1951
Period size: 639 Copynumber: 2.0 Consensus size: 636
306278 TTTCTAGAAA
* *
306288 GTGACACTTTAGGCTTAGTTCTTTTTAATAGGTTAGTTTAGACAATACTTAGAATTTTGGTTTAT
1 GTGACACTTTAGGCTTAGTACTTTTTAATAGGTTAATTTAGACAATACTTAGAATTTTGGTTTAT
* * * * *
306353 TAATTAGTCCCCAACTTTAGAAATTATTGATTTAGTTCCTTACTCTTTTTGTCTTTTAGAATATG
66 TAATTAGTCACCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTAGTATTTTAGAATACG
* * *
306418 ATATTTTAGATCTTAACCTTTTAGTTCCTGAACTTTGATTAGAACTTTCATAGTGACATAATAAA
131 ATATTTTAGATCCTAACCTTTTAGTTCCTGAACTTCGATTAGAACTTTAATAGTGACATAATAAA
* * *
306483 ATAGGTTAAATAGAGCCTTCATTTTTAGCTAGATTTCGATATAGTCTTCTTAATTTAAGGAATAA
196 ATAGGTTAAATAGAGCCTTCATTTTTAGATAGATTTCAATATAATCTTCTTAATTTAAGGAATAA
* * * * * * *
306548 TTCGAGTTGGCCTTGAATAAATGCTCGAGGGACCATCTTGGCTATTCGATTCATTATTTGGTTTA
261 TTAGAGTTGACCTCGAATAAATGCTCGAGGGACCATCTCGACTATTCGATTCAGTAATTGGTTTA
* * * *
306613 AAAATCAAATAGGGTTAATATTAGAACTTACACTACTAGGTTTGTGCCTTTGGGTTCTTTAACTT
326 AAAATCAAATAGGGTTAATAGTAGAACCTACACTACTAGGTTTATGCCTTTAGGTTCTTTAACTT
* * *
306678 TCATAATTTGACACTTTAGGATAAAGAGAGCCTTAACTAACACTTAGTTAATTAGGACAAA-TAA
391 TCATAATTCGACACTTTAGAATAAAGAGAGCCTTAAATAACACTTAGTTAATTAGGACAAATTAA
*
306742 GAATTTGTTTGATTGCATTTGATTTTTTAAACCATAAGGCAATGTTCACTTATTACGA-AATT-A
456 -AATTTGTTTGATTGCATTTGATTTTTT-AACCATAAGGCAATGCTCACTTATTA-GAGAATTAA
* * *
306805 TGGTATATCTCCCACAAGCATGCTCATGGGGTGACTATTGGTGATTCCCAAAATAGGTCGAACAT
518 TGATATATCTCCCACAAGCATGCTCAGGGGGTGACTACTGGTGATTCCCAAAATAGGTCG-ACAT
306870 CATTTTCAAAACCGCATCATGATTTCTAAAATTAAGACAATGTCCGATTATTGGG
582 CATTTTCAAAACCGCATCATGATTTCTAAAATTAAGACAATGTCCGATTATTGGG
* *
306925 GTGACACTTTAGGCTTAGTACTTTTTAGTAGGTTAATTTAGACAATATTTAGAATTTTGGTTTAT
1 GTGACACTTTAGGCTTAGTACTTTTTAATAGGTTAATTTAGACAATACTTAGAATTTTGGTTTAT
*
306990 TAATTATTCACCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTAGTATTTTAGAACT-C
66 TAATTAGTCACCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTAGTATTTTAGAA-TAC
* ** * *
307054 GATATTTTAGATCCTGACCTTTTTTTTCCTCGAACTTCGATTAGAACTTTAATATTGACATAATC
130 GATATTTTAGATCCTAACCTTTTAGTTCCT-GAACTTCGATTAGAACTTTAATAGTGACATAATA
*
307119 AAATAGGTTAAATAGAGCC-TCTATTTTTAGATAGATTTCAATATAATCTTCTTAATTTAGGGAA
194 AAATAGGTTAAATAGAGCCTTC-ATTTTTAGATAGATTTCAATATAATCTTCTTAATTTAAGGAA
* *
307183 TAATTAGAGTTAGACCTCGCATAAATGCTCGAGGGACTATCTCGACTATTCGATTCAGTAATTGG
258 TAATTAGAGTT-GACCTCGAATAAATGCTCGAGGGACCATCTCGACTATTCGATTCAGTAATTGG
* *
307248 TTTAAAAATCAAATAGGGTTAATAGTAGAACCTATACTGCTAGGTTTATGCCTTTAGGTTCTTTA
322 TTTAAAAATCAAATAGGGTTAATAGTAGAACCTACACTACTAGGTTTATGCCTTTAGGTTCTTTA
* *
307313 ACTTTCATAATTCGACACTTTAGAATAGAGAGAGCCTTAAATAACCCTTAGTTAATTAGGACAAA
387 ACTTTCATAATTCGACACTTTAGAATAAAGAGAGCCTTAAATAACACTTAGTTAATTAGGACAAA
*
307378 TTAAAATTTGTTTGATTGCATTTTATTTTTTAACCATAAGGCAATGCTCACTTATTAGAGAATTA
452 TTAAAATTTGTTTGATTGCATTTGATTTTTTAACCATAAGGCAATGCTCACTTATTAGAGAATTA
* * * *
307443 ATGATATATCTCCCACACGCATGCTTAGGGGGTGATTACTGGTGATTCCCGAAATAGGTCGACAT
517 ATGATATATCTCCCACAAGCATGCTCAGGGGGTGACTACTGGTGATTCCCAAAATAGGTCGACAT
* * *
307508 CATTTTCAAAACCGTATCATGATTTCTAAAATTAAGGCAATGTCTGATTATT
582 CATTTTCAAAACCGCATCATGATTTCTAAAATTAAGACAATGTCCGATTATT
307560 AGGTACAATA
Statistics
Matches: 574, Mismatches: 54, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
637 147 0.26
638 180 0.31
639 244 0.43
640 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (636 bp):
GTGACACTTTAGGCTTAGTACTTTTTAATAGGTTAATTTAGACAATACTTAGAATTTTGGTTTAT
TAATTAGTCACCAACTTTAGAAATTATTGATTTAGGTCCTTACTCTTTTAGTATTTTAGAATACG
ATATTTTAGATCCTAACCTTTTAGTTCCTGAACTTCGATTAGAACTTTAATAGTGACATAATAAA
ATAGGTTAAATAGAGCCTTCATTTTTAGATAGATTTCAATATAATCTTCTTAATTTAAGGAATAA
TTAGAGTTGACCTCGAATAAATGCTCGAGGGACCATCTCGACTATTCGATTCAGTAATTGGTTTA
AAAATCAAATAGGGTTAATAGTAGAACCTACACTACTAGGTTTATGCCTTTAGGTTCTTTAACTT
TCATAATTCGACACTTTAGAATAAAGAGAGCCTTAAATAACACTTAGTTAATTAGGACAAATTAA
AATTTGTTTGATTGCATTTGATTTTTTAACCATAAGGCAATGCTCACTTATTAGAGAATTAATGA
TATATCTCCCACAAGCATGCTCAGGGGGTGACTACTGGTGATTCCCAAAATAGGTCGACATCATT
TTCAAAACCGCATCATGATTTCTAAAATTAAGACAATGTCCGATTATTGGG
Found at i:312728 original size:19 final size:20
Alignment explanation
Indices: 312704--312763 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 20
312694 GTTTTACTTA
312704 TATTTTCTTTC-TCTTTTTT
1 TATTTTCTTTCATCTTTTTT
* *
312723 TATTTTCCTTCAT-TTTCTT
1 TATTTTCTTTCATCTTTTTT
* *
312742 GATTTTTCTTTCTTCTTTTTT
1 TA-TTTTCTTTCATCTTTTTT
312763 T
1 T
312764 GTTCTCTTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
19 16 0.52
20 10 0.32
21 5 0.16
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.75
Consensus pattern (20 bp):
TATTTTCTTTCATCTTTTTT
Found at i:324717 original size:79 final size:76
Alignment explanation
Indices: 324580--324722 Score: 173
Period size: 79 Copynumber: 1.8 Consensus size: 76
324570 CAATAAAATA
* *
324580 TTATTTAATTAATTCAATTAAATATACATTAAAGACTTATAATCTGAATTATAATC-TTTAATGT
1 TTATTTAATTAATTCAATTAAATATACATTAAAGACTTATAATCTAAATTACAATCTTTTAATGT
324644 TTATTTAAAAC
66 TTATTTAAAAC
* * * *
324655 TTATTTAATT-ATTCCAAATTATATATACCAATTAAAAGAGTTGTAATCTAAATTACATTCTTTT
1 TTATTTAATTAATT-C-AATTAAATATA-C-ATT-AAAGACTTATAATCTAAATTACAATCTTTT
324719 AATG
61 AATG
324723 CTTACTTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
74 3 0.05
75 11 0.20
76 10 0.18
77 1 0.02
78 3 0.05
79 21 0.38
80 7 0.12
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (76 bp):
TTATTTAATTAATTCAATTAAATATACATTAAAGACTTATAATCTAAATTACAATCTTTTAATGT
TTATTTAAAAC
Found at i:329828 original size:27 final size:27
Alignment explanation
Indices: 329783--329834 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
329773 CTCAACATTG
* * *
329783 GGCCAATTGCTCGTCCCTCCTATACCA
1 GGCCAAATGCTCATACCTCCTATACCA
*
329810 GGCCAAATGCTCATACCTCTTATAC
1 GGCCAAATGCTCATACCTCCTATAC
329835 TGGGCCTCGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.23, C:0.37, G:0.13, T:0.27
Consensus pattern (27 bp):
GGCCAAATGCTCATACCTCCTATACCA
Found at i:329840 original size:27 final size:27
Alignment explanation
Indices: 329781--329840 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
329771 GGCTCAACAT
* * *
329781 TGGGCCAATTGCTCGTCCCTCCTATAC
1 TGGGCCAAATGCTCATACCTCCTATAC
** *
329808 CAGGCCAAATGCTCATACCTCTTATAC
1 TGGGCCAAATGCTCATACCTCCTATAC
329835 TGGGCC
1 TGGGCC
329841 TCGTGTATCC
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.20, C:0.35, G:0.18, T:0.27
Consensus pattern (27 bp):
TGGGCCAAATGCTCATACCTCCTATAC
Found at i:340362 original size:18 final size:18
Alignment explanation
Indices: 340297--340363 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 18
340287 AGATTGAAAT
*
340297 TAATTTATTTTTTTATAA
1 TAATTTATTTTATTATAA
* * *
340315 AAATATA-TTAATTATAA
1 TAATTTATTTTATTATAA
*
340332 T-ATTAATTATTATTATAA
1 TAATTTATT-TTATTATAA
*
340350 TAATTTAGTTTATT
1 TAATTTATTTTATT
340364 TTTTTTACGA
Statistics
Matches: 36, Mismatches: 10, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
16 3 0.08
17 9 0.25
18 19 0.53
19 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (18 bp):
TAATTTATTTTATTATAA
Found at i:347399 original size:4 final size:4
Alignment explanation
Indices: 347390--347414 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
347380 TCGAGTTTGT
347390 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
347415 TAATAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:347418 original size:3 final size:3
Alignment explanation
Indices: 347410--347463 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
347400 TAAATAAATA
* *
347410 AAT AAT AAT AAT ATTT TAT AAT AAT AAT AAT AAT -AT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
347455 AAT AAT AAT
1 AAT AAT AAT
347464 TGAAAAATGG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
2 2 0.04
3 42 0.93
4 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
AAT
Done.