Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000774.1 Hibiscus syriacus cultivar Beakdansim tig00001502_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105336

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
222--652
165
2.6
164
82
3
465
30
25
19
23
1.98
264--652
163
2.4
163
84
3
476
31
26
19
23
1.98
26--518
246
2.0
242
86
3
691
29
25
20
24
1.99
1359--1585
35
6.7
33
72
18
164
43
4
7
45
1.51
1336--1512
73
2.4
73
80
7
191
44
3
8
43
1.53
1485--1541
29
2.1
28
87
9
82
49
7
1
42
1.40
1450--1574
62
2.0
61
83
7
155
45
4
5
44
1.48
1492--1660
85
1.9
88
82
12
215
44
5
4
44
1.47
1576--1641
29
2.4
28
82
5
80
45
7
1
45
1.41
1653--1745
34
2.6
36
81
11
104
43
1
6
49
1.35
2995--3051
15
4.2
13
78
17
53
21
3
1
73
1.07
4454--4584
22
6.1
22
91
5
223
19
29
0
51
1.46
10237--10268
2
16.0
2
100
0
64
50
0
0
50
1.00
16615--16668
17
3.0
17
77
15
54
38
1
0
59
1.08
16647--16739
21
4.6
21
70
18
72
49
0
1
49
1.07
16792--16855
13
4.8
13
69
16
51
51
0
0
48
1.00
16790--16846
24
2.3
26
82
8
75
54
0
0
45
0.99
16827--16866
18
2.2
18
86
8
55
47
0
0
52
1.00
17112--17146
16
2.1
18
89
10
56
48
0
0
51
1.00
17425--17467
22
2.0
22
81
9
52
41
0
2
55
1.12
18167--18235
25
2.7
26
90
2
113
57
4
13
24
1.53
18167--18245
26
3.1
25
83
8
97
58
3
11
26
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18730--18792
21
3.0
21
95
0
108
36
20
15
26
1.93
19202--19232
3
10.3
3
92
0
53
29
0
0
70
0.87
21090--21128
21
1.9
19
85
10
51
38
0
0
61
0.96
21830--21917
35
2.4
37
83
9
99
47
7
9
35
1.64
25844--26074
107
2.2
106
84
3
295
35
12
11
40
1.78
27067--27107
20
2.0
21
95
4
75
14
14
34
36
1.87
28780--28817
20
2.0
20
89
5
60
26
10
2
60
1.43
31614--31650
2
18.0
2
94
5
65
48
0
2
48
1.15
31661--31694
13
2.7
13
90
4
52
73
0
8
17
1.08
31781--31811
3
10.3
3
100
0
62
67
0
0
32
0.91
31892--31929
16
2.4
16
90
0
58
71
0
0
28
0.87
33927--33960
9
3.8
9
96
0
59
0
23
2
73
0.97
34486--34896
83
4.9
82
83
5
493
25
19
21
33
1.97
35681--35916
97
2.4
98
82
8
302
32
19
16
31
1.94
38683--38716
16
2.2
16
89
5
52
52
5
2
38
1.41
39430--39567
42
3.3
42
80
2
159
49
18
10
21
1.78
40849--40887
21
1.9
20
84
5
51
41
10
17
30
1.83
61731--61808
39
2.0
39
95
5
140
38
10
21
29
1.87
62287--62320
17
2.1
16
88
5
50
76
0
8
14
1.01
72067--72100
17
2.1
16
88
5
50
76
0
8
14
1.01
72575--72621
24
2.0
24
83
8
60
55
10
4
29
1.53
79185--79533
138
2.5
140
82
4
377
44
12
12
29
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81060--81185
57
2.2
57
82
4
146
23
19
16
39
1.92
81061--81206
29
5.1
29
77
1
123
24
19
15
40
1.90
87663--87727
32
2.1
32
97
2
123
63
9
9
18
1.50
88460--88608
60
2.5
60
84
4
176
39
14
11
34
1.81
88519--88632
60
1.9
60
85
3
158
39
14
14
31
1.86
90621--90664
3
14.7
3
100
0
88
31
0
0
68
0.90
93000--93079
32
2.5
31
80
8
79
43
28
11
16
1.82
93651--93680
14
2.1
14
93
0
51
40
16
0
43
1.48
96865--96912
17
2.8
17
75
12
53
52
0
6
41
1.27
97415--97448
13
2.7
12
90
9
50
79
0
11
8
0.94
104818--104869
14
3.9
13
76
20
54
40
1
1
55
1.22
104856--104938
19
4.5
17
69
21
51
46
3
6
43
1.45
104834--104982
57
2.7
56
87
6
212
45
3
6
44
1.44

Tables:   1

The End!