genome.fa.s7742.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007742.1 Hibiscus syriacus cultivar Beakdansim tig00110005_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174412

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3111--3193	29	2.8	29	92	1	139	43	9	14	32	1.78
4476--4781	158	1.9	158	97	0	587	34	13	23	28	1.93
6323--6573	118	2.1	118	81	1	288	33	12	16	37	1.87
6538--6630	43	2.2	43	82	0	114	31	11	20	36	1.89
21157--21214	20	2.8	20	77	12	64	8	15	3	72	1.23
21181--21244	34	1.9	33	83	3	83	12	14	4	68	1.35
28055--28097	14	2.9	15	86	10	61	67	0	0	32	0.91
28080--28150	20	3.5	20	72	11	72	61	2	5	29	1.33
28055--28112	28	2.0	30	86	6	84	67	0	1	31	1.01
28098--28140	23	2.0	23	86	9	63	58	4	9	27	1.49
45133--45225	36	2.6	36	96	0	168	51	3	19	25	1.62
45318--45368	22	2.4	21	75	12	52	13	11	13	60	1.59
46645--46687	20	2.2	20	91	0	68	32	20	13	32	1.92
51553--51581	12	2.4	12	100	0	58	24	10	20	44	1.82
56055--56097	20	2.2	20	86	0	59	32	18	13	34	1.90
59847--59995	74	2.0	74	100	0	298	47	17	13	21	1.81
69510--69544	18	1.9	18	88	0	52	31	22	11	34	1.90
74480--74534	26	2.0	26	86	6	74	70	3	10	14	1.28
78545--78588	21	2.1	21	100	0	88	34	4	34	27	1.77
78793--78937	75	1.9	75	82	9	179	33	4	10	51	1.57
79695--79774	35	2.4	34	83	8	101	37	0	1	61	1.04
79662--79769	35	3.1	33	80	11	94	34	0	3	62	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83574--83611	13	3.0	13	88	3	60	44	0	0	55	0.99
84485--84516	16	2.0	16	100	0	64	37	6	18	37	1.76
92906--92952	20	2.4	20	82	10	53	34	21	10	34	1.88
101372--101414	20	2.2	20	91	0	68	30	23	13	32	1.93
103538--103576	21	1.9	20	85	15	53	33	17	15	33	1.92
108131--108164	13	2.5	14	90	4	52	23	23	0	52	1.47
115711--116085	198	1.9	195	98	1	723	29	16	19	33	1.94
118016--118055	20	2.0	20	85	0	53	45	12	17	25	1.83
121672--121715	20	2.2	20	88	8	63	22	13	9	54	1.67
122136--122203	32	2.1	32	88	0	100	29	32	1	36	1.67
133901--133926	13	2.0	13	100	0	52	15	0	30	53	1.42
135391--135451	20	3.0	20	85	0	95	13	31	37	18	1.88
139345--139428	23	3.9	20	74	17	78	22	23	29	23	1.99
139345--139426	22	3.7	22	78	9	87	23	23	30	23	1.99
145543--145586	23	1.9	23	86	9	63	38	6	11	43	1.67
146841--146923	21	4.0	21	75	20	84	14	24	39	21	1.91
146841--146923	41	2.0	41	88	4	123	14	24	39	21	1.91
147601--147688	45	2.0	45	97	0	167	36	14	6	42	1.73
159527--159559	2	16.5	2	100	0	66	48	0	0	51	1.00
162629--162665	17	2.2	17	86	13	51	54	0	8	37	1.30
162684--162716	17	1.9	17	93	0	57	33	0	0	66	0.92
163137--163282	17	8.2	17	70	20	77	74	0	10	14	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163186--163305	21	5.9	20	69	25	67	71	0	12	15	1.14
163121--163305	72	2.5	72	77	13	175	73	0	11	14	1.13
163255--163319	20	3.4	18	77	10	67	72	0	13	13	1.13
163230--163351	44	2.8	43	79	15	119	70	0	9	19	1.15
163163--163330	18	9.8	18	68	21	62	72	0	11	16	1.13
163317--163357	15	2.6	16	81	11	50	68	2	0	29	1.03
163367--163421	26	2.1	27	82	3	67	72	1	9	16	1.18
163409--163446	17	2.2	18	86	13	53	81	0	10	7	0.87
163539--163588	3	17.3	3	95	4	86	70	0	0	30	0.88
169903--169946	14	3.4	14	87	9	58	45	0	4	50	1.22
171448--171514	21	3.4	21	69	23	72	11	20	16	50	1.76
171429--171528	38	2.7	38	93	1	175	18	20	14	48	1.82
172359--172399	15	2.7	15	88	0	55	29	19	24	26	1.98
172391--172544	73	2.1	73	89	2	229	40	13	20	25	1.89
172515--172572	28	2.0	29	90	3	91	41	13	13	31	1.84
172544--172759	36	6.1	36	72	13	162	38	13	19	28	1.89
172506--172674	66	2.6	64	84	6	214	39	13	19	27	1.89
172635--172696	21	3.2	21	65	25	55	40	11	20	27	1.87
172688--173122	40	11.0	40	89	1	592	39	11	17	31	1.86
172835--172898	20	3.2	20	66	24	53	43	10	14	31	1.79

Tables:   1

The End!