Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007743.1 Hibiscus syriacus cultivar Beakdansim tig00110006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 323463
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:277 original size:22 final size:22
Alignment explanation
Indices: 252--295 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
242 CATTTTTGTT
252 CATTTGATGCT-AAATGGTTTGA
1 CATTTGATGCTCAAA-GGTTTGA
274 CATTTGATGCTCAAAGGTTTGA
1 CATTTGATGCTCAAAGGTTTGA
296 TGGGGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (22 bp):
CATTTGATGCTCAAAGGTTTGA
Found at i:911 original size:15 final size:15
Alignment explanation
Indices: 889--943 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
879 TTTTTTGTCC
889 CTTTTTCTTTTTTT-
1 CTTTTTCTTTTTTTG
903 CTTTGTTCTTTTTTTG
1 CTTT-TTCTTTTTTTG
*
919 CTTTTTTTTTTTTTG
1 CTTTTTCTTTTTTTG
934 CTTTTT-TTTT
1 CTTTTTCTTTT
944 CTTTTTGCCC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
14 8 0.21
15 26 0.68
16 4 0.11
ACGTcount: A:0.00, C:0.11, G:0.05, T:0.84
Consensus pattern (15 bp):
CTTTTTCTTTTTTTG
Found at i:948 original size:24 final size:24
Alignment explanation
Indices: 890--949 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
880 TTTTTGTCCC
890 TTTTTCTTTTTTTCTTTGTTCTTT
1 TTTTTCTTTTTTTCTTTGTTCTTT
* *
914 TTTTGCTTTTTTT-TTTTTTGCTTTT
1 TTTTTCTTTTTTTCTTTGTT-C-TTT
939 TTTTTCTTTTT
1 TTTTTCTTTTT
950 GCCCTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.16
24 13 0.42
25 13 0.42
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (24 bp):
TTTTTCTTTTTTTCTTTGTTCTTT
Found at i:957 original size:17 final size:17
Alignment explanation
Indices: 919--963 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
909 TCTTTTTTTG
* *
919 CTTTTTTTTTTTTTGCT
1 CTTTTTTTCTTTTTGCC
*
936 TTTTTTTTCTTTTTGCC
1 CTTTTTTTCTTTTTGCC
953 CTTTTTATTCT
1 CTTTTT-TTCT
964 GATGCACTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.78
Consensus pattern (17 bp):
CTTTTTTTCTTTTTGCC
Found at i:957 original size:18 final size:17
Alignment explanation
Indices: 890--963 Score: 64
Period size: 18 Copynumber: 4.4 Consensus size: 17
880 TTTTTGTCCC
**
890 TTTTTCTTTTTTTCTTT
1 TTTTTCTTTTTGCCTTT
*
907 GTTCTT-TTTTTG-CTTT
1 -TTTTTCTTTTTGCCTTT
*
923 TTTTT-TTTTTGCTTTT
1 TTTTTCTTTTTGCCTTT
939 TTTTTCTTTTTGCCCTTT
1 TTTTTCTTTTTG-CCTTT
*
957 TTATTCT
1 TTTTTCT
964 GATGCACTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
15 10 0.21
16 12 0.26
17 11 0.23
18 14 0.30
ACGTcount: A:0.01, C:0.14, G:0.05, T:0.80
Consensus pattern (17 bp):
TTTTTCTTTTTGCCTTT
Found at i:958 original size:19 final size:16
Alignment explanation
Indices: 890--951 Score: 74
Period size: 15 Copynumber: 3.9 Consensus size: 16
880 TTTTTGTCCC
*
890 TTTTTCTTTTTTT-CT
1 TTTTTTTTTTTTTGCT
* *
905 TTGTTCTTTTTTTGC-
1 TTTTTTTTTTTTTGCT
920 TTTTTTTTTTTTTGCT
1 TTTTTTTTTTTTTGCT
936 TTTTTTTTCTTTTTGC
1 TTTTTTTT-TTTTTGC
952 CCTTTTTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
15 25 0.61
16 9 0.22
17 7 0.17
ACGTcount: A:0.00, C:0.11, G:0.06, T:0.82
Consensus pattern (16 bp):
TTTTTTTTTTTTTGCT
Found at i:2137 original size:8 final size:8
Alignment explanation
Indices: 2121--2159 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
2111 ATTGTAGATG
2121 AAAATGCA
1 AAAATGCA
*
2129 AAAAGGCA
1 AAAATGCA
2137 AAAATGC-
1 AAAATGCA
2144 AAAATGCA
1 AAAATGCA
*
2152 AGAATGCA
1 AAAATGCA
2160 TGAAATGTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
7 7 0.26
8 20 0.74
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (8 bp):
AAAATGCA
Found at i:2147 original size:15 final size:15
Alignment explanation
Indices: 2121--2159 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
2111 ATTGTAGATG
2121 AAAATGCAAAAAGGCA
1 AAAATGC-AAAAGGCA
*
2137 AAAATGCAAAATGCA
1 AAAATGCAAAAGGCA
*
2152 AGAATGCA
1 AAAATGCA
2160 TGAAATGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAAATGCAAAAGGCA
Found at i:5204 original size:21 final size:20
Alignment explanation
Indices: 5149--5204 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
5139 ATAATTTAAT
*
5149 ATATATATAGTAATATTAGAC
1 ATATATATA-TAATATTAGAA
* *
5170 TTATA-AGTAAAATATTAAGAA
1 ATATATA-TATAATATT-AGAA
5191 ATATATATATAATA
1 ATATATATATAATA
5205 AATAATAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
20 7 0.26
21 19 0.70
22 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.38
Consensus pattern (20 bp):
ATATATATATAATATTAGAA
Found at i:5237 original size:55 final size:58
Alignment explanation
Indices: 5184--5293 Score: 136
Period size: 59 Copynumber: 1.9 Consensus size: 58
5174 AAGTAAAATA
* *
5184 TTAAGA-A-ATATATATATAATAAATAATAAAAT-ATAGTAAAAATCAAATGAAAATAAT
1 TTAAGATATATATACATATAAT-AATAATAAAATAATAATAAAAAT-AAATGAAAATAAT
* *
5241 TTAATATATATATACATATAATAATAATAACATGAATAATAAAAATAAATGAA
1 TTAAGATATATATACATATAATAATAATAAAAT-AATAATAAAAATAAATGAA
5294 TAAAATATCC
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
57 5 0.11
58 11 0.24
59 19 0.42
60 10 0.22
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (58 bp):
TTAAGATATATATACATATAATAATAATAAAATAATAATAAAAATAAATGAAAATAAT
Found at i:5281 original size:18 final size:17
Alignment explanation
Indices: 5258--5300 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
5248 ATATATACAT
5258 ATAATAATAATAACATGA
1 ATAATAATAATAA-ATGA
*
5276 ATAATAAAAATAAATGA
1 ATAATAATAATAAATGA
5293 ATAA-AATA
1 ATAATAATA
5301 TCCATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATGA
Found at i:7348 original size:26 final size:26
Alignment explanation
Indices: 7319--7371 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7309 GGTCTGACGT
* *
7319 GGCATTTTCTAAAAGGTCCAGTCAGC
1 GGCAGTTTCTAAAAGATCCAGTCAGC
* *
7345 GGCAGTTTCTAGAAGATCTAGTCAGC
1 GGCAGTTTCTAAAAGATCCAGTCAGC
7371 G
1 G
7372 CGCCTTCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
GGCAGTTTCTAAAAGATCCAGTCAGC
Found at i:7605 original size:25 final size:26
Alignment explanation
Indices: 7577--7630 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
7567 TTATTAAAGC
*
7577 TTTCT-CTTTTATTTTATTTTCAAG-T
1 TTTCTGCTTTTACTTTATTTT-AAGAT
*
7602 TTTCTGTTTTTACTTTATTTTAAGAT
1 TTTCTGCTTTTACTTTATTTTAAGAT
7628 TTT
1 TTT
7631 TTTTTCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.17, C:0.09, G:0.06, T:0.69
Consensus pattern (26 bp):
TTTCTGCTTTTACTTTATTTTAAGAT
Found at i:9628 original size:67 final size:67
Alignment explanation
Indices: 9520--9651 Score: 176
Period size: 67 Copynumber: 2.0 Consensus size: 67
9510 CCTTAGGTCC
* * *
9520 ATAAGGAATTATCAATCAGTGCTGAACCTATTCAAGGAATTACCAGCAGCGACTGAACCTGCCAG
1 ATAAGGAATTATCAATCAATGCTGAACCTATACAAGGAATTACCAGCAGCGAATGAACCTGCCAG
9585 AG
66 AG
* * * * *
9587 ATAAGGAATTA-CGAGTCAATGTTGAACCTATACAATGAATTACTAGTAGCGAATGAACCTGCCA
1 ATAAGGAATTATC-AATCAATGCTGAACCTATACAAGGAATTACCAGCAGCGAATGAACCTGCCA
9651 G
65 G
9652 TCTTTGTACC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 1 0.02
67 55 0.98
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (67 bp):
ATAAGGAATTATCAATCAATGCTGAACCTATACAAGGAATTACCAGCAGCGAATGAACCTGCCAG
AG
Found at i:12940 original size:17 final size:17
Alignment explanation
Indices: 12900--12940 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
12890 ACAAAATAAG
*
12900 ACTCATCAACTTAAATA
1 ACTCATTAACTTAAATA
12917 ACTCATTAACTTAAATA
1 ACTCATTAACTTAAATA
12934 ACTCATT
1 ACTCATT
12941 TTTTACTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (17 bp):
ACTCATTAACTTAAATA
Found at i:17276 original size:29 final size:28
Alignment explanation
Indices: 17213--17285 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
17203 AATTATAATT
* *
17213 TAAAAAAA-CCTCAAACTTTTCTCAAATC
1 TAAAAAAACCCT-AAAATTTTCTCAAATA
*
17241 TAAAAAAACCCTAAAATTTTCTCAATTA
1 TAAAAAAACCCTAAAATTTTCTCAAATA
* *
17269 TAACAAAACCCCAAAAT
1 TAAAAAAACCCTAAAAT
17286 ATTAAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 36 0.92
29 3 0.08
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (28 bp):
TAAAAAAACCCTAAAATTTTCTCAAATA
Found at i:19609 original size:36 final size:36
Alignment explanation
Indices: 19561--19780 Score: 197
Period size: 37 Copynumber: 5.8 Consensus size: 36
19551 AAAATAAATG
*
19561 ATATATAGTTTTTAAAACATTTTGAAAACATTTATA
1 ATATATAGTTTTTAAAACATTTTGAAAACATATATA
* * * *
19597 TTATATAGTTTTTTAAAACGTTTTTGAAAATAAATATA
1 ATATATAG-TTTTTAAAAC-ATTTTGAAAACATATATA
* * *
19635 ATATATAGTTTTCAAGACATTTTTGAAAATATATATA
1 ATATATAGTTTTTAAAACA-TTTTGAAAACATATATA
** * *
19672 TATTATATAGTTTTTAAAATGTTTTGAAAATAAATATAAA
1 -A-TATATAGTTTTTAAAACATTTTG-AAA-ACATATATA
*
19712 ATATATAATTTTTTGAAAAAACATTTTGAAAACATATATA
1 ATATAT-AGTTTTT---AAAACATTTTGAAAACATATATA
* *
19752 ATATATAATTTTTAAAACAGTTTTTAAAA
1 ATATATAGTTTTTAAAACA-TTTTGAAAA
19781 TTATATGGTT
Statistics
Matches: 149, Mismatches: 23, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
36 13 0.09
37 42 0.28
38 32 0.21
39 30 0.20
40 20 0.13
41 3 0.02
42 9 0.06
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (36 bp):
ATATATAGTTTTTAAAACATTTTGAAAACATATATA
Found at i:19702 original size:75 final size:74
Alignment explanation
Indices: 19548--19781 Score: 246
Period size: 75 Copynumber: 3.1 Consensus size: 74
19538 TTAAAAAAAA
* *
19548 TTGAAAAT-AA-ATGATATATAGTTTTTAAAACATTTTGAAAACATTTATATTATATAGTTTTTT
1 TTGAAAATAAATATAATATATAGTTTTCAAAACATTTTGAAAACATTTATATTATATAGTTTTTT
19611 AAAACGTTT
66 AAAACGTTT
* *
19620 TTGAAAATAAATATAATATATAGTTTTCAAGACATTTTTGAAAATATATATATATTATATAG-TT
1 TTGAAAATAAATATAATATATAGTTTTCAAAACA-TTTTGAAAACAT-T-TATATTATATAGTTT
*
19684 TTTAAAATG-TT
63 TTTAAAACGTTT
* * * *
19695 TTGAAAATAAATATAAAATATATAATTTTTTGAAAAAACATTTTGAAAACATATATAATATATA-
1 TTGAAAATAAATAT--AATATAT-A-GTTTT--CAAAACATTTTGAAAACATTTATATTATATAG
*
19759 ATTTTTAAAACAGTTT
60 TTTTTTAAAAC-GTTT
19775 TT-AAAAT
1 TTGAAAAT
19782 TATATGGTTT
Statistics
Matches: 136, Mismatches: 12, Indels: 21
0.80 0.07 0.12
Matches are distributed among these distances:
72 8 0.06
73 2 0.01
74 19 0.14
75 27 0.20
76 11 0.08
77 19 0.14
78 20 0.15
79 10 0.07
80 15 0.11
81 5 0.04
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (74 bp):
TTGAAAATAAATATAATATATAGTTTTCAAAACATTTTGAAAACATTTATATTATATAGTTTTTT
AAAACGTTT
Found at i:19785 original size:29 final size:30
Alignment explanation
Indices: 19753--19848 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
19743 ACATATATAA
*
19753 TATATAATTTTTAAA-ACAGTTTTT-AAAAT
1 TATATAGTTTTTAAAGACA-TTTTTGAAAAT
*
19782 TATATGGTTTTTAAAGACATTTTTGAAAAT
1 TATATAGTTTTTAAAGACATTTTTGAAAAT
* *
19812 TATATAGTTTTTTAAAG-TATTTTTGGAAATT
1 TATATAG-TTTTTAAAGACATTTTT-GAAAAT
19843 TATATA
1 TATATA
19849 TAATATGTAG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
29 18 0.31
30 20 0.34
31 20 0.34
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (30 bp):
TATATAGTTTTTAAAGACATTTTTGAAAAT
Found at i:19827 original size:31 final size:31
Alignment explanation
Indices: 19760--19848 Score: 105
Period size: 31 Copynumber: 2.9 Consensus size: 31
19750 TAATATATAA
19760 TTTTTAAA-ACAGTTTTT-AAAATTATAT-GG
1 TTTTTAAAGACA-TTTTTGAAAATTATATAGG
*
19789 TTTTTAAAGACATTTTTGAAAATTATATAGT
1 TTTTTAAAGACATTTTTGAAAATTATATAGG
* *
19820 TTTTTAAAG-TATTTTTGGAAATTTATATA
1 TTTTTAAAGACATTTTT-GAAAATTATATA
19849 TAATATGTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
29 13 0.25
30 19 0.36
31 21 0.40
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (31 bp):
TTTTTAAAGACATTTTTGAAAATTATATAGG
Found at i:19916 original size:3 final size:3
Alignment explanation
Indices: 19908--19948 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
19898 TTTTTTATAT
*
19908 TTA TTA TTA TTA TTA TTA TTA TTT TTA TTA CTTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT
19949 TTACTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:19917 original size:12 final size:11
Alignment explanation
Indices: 19902--19948 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 11
19892 ATATAGTTTT
19902 TTATATTTATTA
1 TTAT-TTTATTA
19914 TTATTATTATTA
1 TTATT-TTATTA
19926 TTATTTTTATTA
1 TTA-TTTTATTA
19938 CTTATTTTATT
1 -TTATTTTATT
19949 TTACTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 1 0.03
12 26 0.81
13 5 0.16
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:21327 original size:16 final size:15
Alignment explanation
Indices: 21296--21331 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
21286 TTCTTATTTA
21296 TATTATAATTGTTAT
1 TATTATAATTGTTAT
*
21311 TATTATTATTCGTTAT
1 TATTATAATT-GTTAT
21327 TATTA
1 TATTA
21332 ACGTTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (15 bp):
TATTATAATTGTTAT
Found at i:23132 original size:18 final size:19
Alignment explanation
Indices: 23111--23155 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
23101 ATTTAGACAT
23111 TTTGCATTTT-TTATTTTC
1 TTTGCATTTTGTTATTTTC
23129 TTTGCATTTTGTTATTTTC
1 TTTGCATTTTGTTATTTTC
23148 TTTGCATT
1 TTTGCATT
23156 CACATTAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.69
Consensus pattern (19 bp):
TTTGCATTTTGTTATTTTC
Found at i:26980 original size:165 final size:164
Alignment explanation
Indices: 26747--27577 Score: 974
Period size: 165 Copynumber: 5.0 Consensus size: 164
26737 CTCAAGGCTG
* *
26747 TGACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTA
1 TGACC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTA
* *
26812 AGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCT-CAACGGCAC
65 AGTCTAGAAGGGTTATCTGCCAAC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCAC
*
26876 ATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATC
128 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATC
** * * * *
26913 TG-CCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGATGGCACATCATTTGCAGCATAACTTA
1 TGACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTA
26977 AGTCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA
65 AGTCTAGAAGGGTTATCTGCCAA-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA
27042 TCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATC
129 TCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATC
* * * * * * * *
27078 TG-CCAAAGACCTTCGAATTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAACTCA
1 TGACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTA
* ** * * *
27142 AGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTCCGCTCAGCTCCAAGGCATA
65 AGTCTAGAAGGGTTATCTGCCAAC-AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA
* * * *
27207 TCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTC
129 TCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATC
* * * * * * *
27243 TGCCAACAAAAGACCTTTGAGTTTGACTGCGCTCAGCT-CAACGGTACATCATTCGCAGCATAGC
1 TG---ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAAC
* * ** * * * *
27307 TTAAGTCGAGAAGGGCTATCTG-C--CAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGC
62 TTAAGTCTAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGC
* *
27369 ACATCATTTGTAGCATAACTTAAGTCGAGAAGGGTTATC
126 ACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATC
* *
27408 TGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACT
1 TG---ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT
* * *
27473 TAAGTCTAGAAGGGTTGTCCGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCA
63 TAAGTCTAGAAGGGTTATCTGCCAA-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCA
* * **
27538 CATTATTTGCAGCATAGCTTAAGTCGAGAAAAGCTATC
127 CATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATC
27576 TG
1 TG
27578 TCAACGAAGA
Statistics
Matches: 565, Mismatches: 85, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
164 50 0.09
165 378 0.67
166 10 0.02
167 1 0.00
168 77 0.14
169 49 0.09
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (164 bp):
TGACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAA
GTCTAGAAGGGTTATCTGCCAACAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATC
Found at i:27212 original size:249 final size:248
Alignment explanation
Indices: 26753--27577 Score: 1129
Period size: 249 Copynumber: 3.3 Consensus size: 248
26743 GCTGTGACCA
* * *
26753 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * * * * * *
26818 GAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGC-TCAACGGCACATCATT
66 GAAGGGCTATCTG-C--C-AAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATT
* * ** * *
26882 TGCAGCATAGCTTAAGTCGAGAAGGGCTATC--TG-CCAAAGACCCCCGAGTTCGATTACACTCA
127 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTGTGACCAAAGACCTTCGAGTTCGACTACGCTCA
* * * * *
26944 GCTTCGATGGCACATCATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCAACC
192 GC-TCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACC
27002 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
* * *
27067 GAAGGGCTATCTGCCAAAGACCTTCGAATTCGATTACACTCAGCTTCGAGGGCATATCATTTACA
66 GAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCA
* * * *
27132 GCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTCCGCTCAGCT
131 GCATAACTTAAGTCGAGAAGGGTTATCTGTGACC-AAAGACCTTCGAGTTCGACTACGCTCAGCT
*
27197 CCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACA
195 CCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACC
* * * * * *
27251 AAAGACCTTTGAGTTTGACTGCGCTCAGCT-CAACGGTACATCATTCGCAGCATAGCTTAAGTCG
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCG
** *
27315 AGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGT
65 AGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGC
**
27380 AGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC
130 AGCATAACTTAAGTCGAGAAGGGTTATCTG-TGACCAAAGACCTTCGAGTTCGACTACGCTCAGC
*
27445 TCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCCGCCAACC
194 TCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACC
* * *
27500 AAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATTATTTGCAGCATAGCTTAAGTCGA
1 AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
**
27565 GAAAAGCTATCTG
66 GAAGGGCTATCTG
27578 TCAACGAAGA
Statistics
Matches: 512, Mismatches: 56, Indels: 16
0.88 0.10 0.03
Matches are distributed among these distances:
245 25 0.05
246 39 0.08
248 6 0.01
249 412 0.80
250 30 0.06
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (248 bp):
AAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGA
GAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCA
GCATAACTTAAGTCGAGAAGGGTTATCTGTGACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
CAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGGTTGTCTGCCAACC
Found at i:27347 original size:414 final size:401
Alignment explanation
Indices: 26556--27486 Score: 1574
Period size: 414 Copynumber: 2.3 Consensus size: 401
26546 TTTTTAAGAT
* *
26556 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCTAACCAAAGACCTTTGAGTTCGACT
1 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACT
*
26621 ACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGA
66 ACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGA
* **
26686 CCTTCGAGTTCGATTACACTCAACTTCGAGGGCACATCATTTGTAGCATAACTCAAGGCTGTGAC
131 CCTTCGAATTCGATTACACTCAACTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTGTGAC
26751 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
196 CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
26816 TAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCAACGGCACATCAT
261 TAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCAACGGCACATCAT
*
26881 TTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGC
326 TCGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGC
*
26946 TTCGATGGCAC
391 TTCGAGGGCAC
*
26957 ATCATTTGCAGCATAACTTAAGTCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACT
27022 ACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGA
66 ACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGA
* *
27087 CCTTCGAATTCGATTACACTCAGCTTCGAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAG
131 CCTTCGAATTCGATTACACTCAACTTCGAGGGCACATCATTTACAGCATAACT-----C---AA-
*
27152 GGTTATCTGTGACCAAAAGACCTTCGAGTTCGACTCCGCTCAGCTCCAAGGCATATCATTTGCAG
187 GG----CTGTGACCAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAG
* *
27217 CACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTTGACTGCGCTCAGCTC
248 CACAACTTAAGTCTAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTC
*
27282 AACGGTACATCATTCGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTC
313 AACGGCACATCATTCGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTC
27347 GATTACACTCAGCTTCGAGGGCAC
378 GATTACACTCAGCTTCGAGGGCAC
*
27371 ATCATTTGTAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACT
1 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACT
* * *
27436 ACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTCTAGAAGGG
66 ACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGG
27487 TTGTCCGCCA
Statistics
Matches: 497, Mismatches: 20, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
401 174 0.35
406 1 0.00
409 2 0.00
410 2 0.00
414 318 0.64
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (401 bp):
ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACT
ACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGA
CCTTCGAATTCGATTACACTCAACTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTGTGAC
CAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCACAACTTAAGTC
TAGAAGGGTTGTCTGCCAACAAAAGACCTTTGAGTTCGACTACGCTCAGCTCAACGGCACATCAT
TCGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGC
TTCGAGGGCAC
Found at i:28100 original size:41 final size:40
Alignment explanation
Indices: 27973--28176 Score: 201
Period size: 41 Copynumber: 5.1 Consensus size: 40
27963 AAATAAATGA
27973 TATATAGTTTTTAAAACATTTTG-AAATCAT-T-TATATAT
1 TATATAGTTTTTAAAACATTTTGAAAAT-ATATATATATAT
28011 TATATAGTTTTTTAAAACATTTTTGAAAATA-A-ATATA-A-
1 TATATAG-TTTTTAAAACA-TTTTGAAAATATATATATATAT
* *
28049 TATATAGTTTTCAAGACATTTTTGAAAATATATATATATAT
1 TATATAGTTTTTAAAACA-TTTTGAAAATATATATATATAT
* * *
28090 TATATAGTTTTTAAAACGTTTTGAAAATAAATATA-AAAT
1 TATATAGTTTTTAAAACATTTTGAAAATATATATATATAT
* *
28129 ATATAATA-TTTTGAAAAACATTTTGAAAACATATATAATATAT
1 -TAT-ATAGTTTT-TAAAACATTTTGAAAATATATAT-ATATAT
*
28172 AATAT
1 TATAT
28177 TTAAAACAGA
Statistics
Matches: 139, Mismatches: 13, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
37 21 0.15
38 15 0.11
39 20 0.14
40 34 0.24
41 43 0.31
42 3 0.02
43 3 0.02
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (40 bp):
TATATAGTTTTTAAAACATTTTGAAAATATATATATATAT
Found at i:28209 original size:29 final size:30
Alignment explanation
Indices: 28167--28242 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 30
28157 ACATATATAA
* *
28167 TATATAATATTTAAA-ACAGATTTT-AAAAT
1 TATATAGTTTTTAAAGACA-ATTTTGAAAAT
* *
28196 TATATGGTTTTTAAAGACATTTTTGAAAAT
1 TATATAGTTTTTAAAGACAATTTTGAAAAT
28226 TATATAGTTTTTTAAAG
1 TATATAG-TTTTTAAAG
28243 TATTTTTGGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 16 0.41
30 14 0.36
31 9 0.23
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.46
Consensus pattern (30 bp):
TATATAGTTTTTAAAGACAATTTTGAAAAT
Found at i:28241 original size:31 final size:30
Alignment explanation
Indices: 28187--28262 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 30
28177 TTAAAACAGA
28187 TTTT-AAAATTATAT-GGTTTTTAAAGACAT
1 TTTTGAAAATTATATAGGTTTTTAAAG-CAT
* *
28216 TTTTGAAAATTATATAGTTTTTTAAAGTAT
1 TTTTGAAAATTATATAGGTTTTTAAAGCAT
*
28246 TTTTGGAAATTTATATA
1 TTTT-GAAAATTATATA
28263 TAATATATAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
29 4 0.10
30 16 0.39
31 21 0.51
ACGTcount: A:0.37, C:0.01, G:0.11, T:0.51
Consensus pattern (30 bp):
TTTTGAAAATTATATAGGTTTTTAAAGCAT
Found at i:28361 original size:13 final size:13
Alignment explanation
Indices: 28325--28354 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
28315 TTTATATTTA
28325 TTATTATTATTATT
1 TTATTATT-TTATT
28339 TTATTATTTTATT
1 TTATTATTTTATT
28352 TTA
1 TTA
28355 CTTTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTATTATTTTATT
Found at i:29716 original size:16 final size:15
Alignment explanation
Indices: 29685--29720 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
29675 TTCTTATTTA
29685 TATTATAATTGTTAT
1 TATTATAATTGTTAT
*
29700 TATTATTATTCGTTAT
1 TATTATAATT-GTTAT
29716 TATTA
1 TATTA
29721 ACGTTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (15 bp):
TATTATAATTGTTAT
Found at i:38565 original size:60 final size:60
Alignment explanation
Indices: 38501--38613 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
38491 AGAGTGTCAA
* *
38501 AGTTT-AAGGATGAAACTAAAATATCCAAAAGTTTAAGGAAT-AATTTAAAATGAAAATAAT
1 AGTTTGAA-GATGAAACTAAAATATCCAAAAATTTAAGG-ATCAAATTAAAATGAAAATAAT
* **
38561 AGTTTGAAGATGAAATTAAAATATTTAAAAATTTAAGGATCAAATTAAAATGA
1 AGTTTGAAGATGAAACTAAAATATCCAAAAATTTAAGGATCAAATTAAAATGA
38614 GAATTATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
59 2 0.04
60 42 0.91
61 2 0.04
ACGTcount: A:0.53, C:0.04, G:0.13, T:0.30
Consensus pattern (60 bp):
AGTTTGAAGATGAAACTAAAATATCCAAAAATTTAAGGATCAAATTAAAATGAAAATAAT
Found at i:39708 original size:20 final size:20
Alignment explanation
Indices: 39672--39710 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
39662 TTGATCAGCA
*
39672 TAGTACGCAAAATCTTATAT
1 TAGTACGCAAAAACTTATAT
39692 TAGTACG-AATAAACTTATA
1 TAGTACGCAA-AAACTTATA
39711 AAATTATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (20 bp):
TAGTACGCAAAAACTTATAT
Found at i:40292 original size:3 final size:3
Alignment explanation
Indices: 40284--40320 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
40274 TTTAATTTAC
40284 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
40321 CATGCGACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:41155 original size:27 final size:27
Alignment explanation
Indices: 41124--41183 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
41114 CTCAAAATGG
*
41124 TGGGTCAGGT-GAAGGGTGTATATTTTT
1 TGGGTCAGGTAG-AGGGTGTATAATTTT
41151 TGGGTCAGGTAGAGGGTGTATAATTTT
1 TGGGTCAGGTAGAGGGTGTATAATTTT
*
41178 CGGGTC
1 TGGGTC
41184 GGGTCTAGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.18, C:0.07, G:0.38, T:0.37
Consensus pattern (27 bp):
TGGGTCAGGTAGAGGGTGTATAATTTT
Found at i:41749 original size:16 final size:16
Alignment explanation
Indices: 41728--41759 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
41718 TACAAAATCT
41728 AATAATTCATAATATA
1 AATAATTCATAATATA
*
41744 AATAATTCATTATATA
1 AATAATTCATAATATA
41760 TATATATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (16 bp):
AATAATTCATAATATA
Found at i:41761 original size:2 final size:2
Alignment explanation
Indices: 41754--41791 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
41744 AATAATTCAT
41754 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41792 AAAATAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:42054 original size:19 final size:19
Alignment explanation
Indices: 42030--42080 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
42020 ACCAACAAAA
*
42030 TCGCAATGCGATCGCTAAT
1 TCGCAACGCGATCGCTAAT
42049 TCGCAACGCGATCGCTAAT
1 TCGCAACGCGATCGCTAAT
42068 TCGCAACGCGATC
1 TCGCAACGCGATC
42081 TCCATTATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22
Consensus pattern (19 bp):
TCGCAACGCGATCGCTAAT
Found at i:42196 original size:20 final size:21
Alignment explanation
Indices: 42171--42263 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
42161 TTTTCCCAAT
*
42171 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
42191 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
42212 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
42232 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
42253 TCGCAATGCGA
1 TCGCAATGCGA
42264 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:42216 original size:41 final size:41
Alignment explanation
Indices: 42171--42263 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
42161 TTTTCCCAAT
42171 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
42212 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
42253 TCGCAATGCGA
1 TCGCAATGCGA
42264 TACTGACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:42276 original size:41 final size:41
Alignment explanation
Indices: 42190--42324 Score: 132
Period size: 41 Copynumber: 3.3 Consensus size: 41
42180 GAATAAGTAA
* *
42190 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
42231 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
42272 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
42313 TTCGCAACGCGA
1 ATCGCAACGCGA
42325 TACTGACTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:42277 original size:20 final size:20
Alignment explanation
Indices: 42252--42346 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
42242 AATTGGGAAA
*
42252 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
42272 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
42293 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
42313 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
42333 TTCGCAACGCGATA
1 ATCGCAACGCGATA
42347 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:42857 original size:20 final size:20
Alignment explanation
Indices: 42832--42869 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
42822 CGATTCTCTC
42832 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
42852 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
42870 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:44212 original size:18 final size:18
Alignment explanation
Indices: 44191--44235 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
44181 TCCACTTCGG
*
44191 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
44209 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
44227 GAGCCATCA
1 GAGCCATCA
44236 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:44771 original size:14 final size:14
Alignment explanation
Indices: 44752--44809 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
44742 ATGCGAAATG
44752 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
44766 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
44782 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
*
44798 AAAATTGCAACG
1 AAAATCGCAACG
44810 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.48, C:0.22, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:44794 original size:32 final size:33
Alignment explanation
Indices: 44736--44826 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
44726 GGAAATGGCT
44736 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
44769 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
44801 ATTGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
44827 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:44862 original size:14 final size:14
Alignment explanation
Indices: 44843--44900 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
44833 TTGTGTTTCG
44843 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
44857 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
44873 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
44889 CGTTGCGATTTT
1 CGTTGCGATTTT
44901 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:44877 original size:32 final size:33
Alignment explanation
Indices: 44838--44908 Score: 135
Period size: 32 Copynumber: 2.2 Consensus size: 33
44828 GCGATTTGTG
44838 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
44870 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
44903 TTTCGC
1 TTTCGC
44909 ATTGTGATAG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 27 0.71
33 11 0.29
ACGTcount: A:0.08, C:0.20, G:0.24, T:0.48
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:44943 original size:20 final size:19
Alignment explanation
Indices: 44889--44955 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
44879 GCGATTTTGT
**
44889 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
* * *
44908 CATTGTGATAGCCATTTCCG
1 CGTTGCGATAGTCATTT-CG
44928 CGTTGCGATAGTCATTTCG
1 CGTTGCGATAGTCATTTCG
44947 CGTTGCGAT
1 CGTTGCGAT
44956 TTTAAGTTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 23 0.59
20 16 0.41
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:46843 original size:14 final size:14
Alignment explanation
Indices: 46824--46859 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
46814 ATTGTTTAAT
46824 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
46838 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
46852 TGATTTGT
1 TGATTTGT
46860 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:46996 original size:19 final size:19
Alignment explanation
Indices: 46974--47041 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
46964 ATCGCAACGA
46974 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
46993 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
47012 GAAAATCGCAA--CG--A-
1 GAAAATCGCAATGCGAAAT
47026 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
47042 TTTTCATTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
14 11 0.24
15 1 0.02
16 2 0.04
17 2 0.04
19 30 0.65
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:47117 original size:20 final size:20
Alignment explanation
Indices: 47060--47117 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
47050 TCGCATTGCG
* *
47060 ATTTTCTCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAGCC
47080 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
47100 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
47118 TCAAATGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:48028 original size:24 final size:24
Alignment explanation
Indices: 48001--48054 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
47991 TTATTCGAAA
* *
48001 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
* *
48025 TTTGATATTTGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
48049 TTTGAT
1 TTTGAT
48055 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:48246 original size:12 final size:12
Alignment explanation
Indices: 48229--48253 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48219 ATATAATCCT
48229 GAAGAAGAAAAA
1 GAAGAAGAAAAA
48241 GAAGAAGAAAAA
1 GAAGAAGAAAAA
48253 G
1 G
48254 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:50571 original size:19 final size:18
Alignment explanation
Indices: 50547--50645 Score: 79
Period size: 19 Copynumber: 5.8 Consensus size: 18
50537 GGAAATTACT
50547 ATCGCAATGCGATATGAAA
1 ATCGCAATGCGA-ATGAAA
*
50566 ATCGCAA--CG-A-GAGA
1 ATCGCAATGCGAATGAAA
50580 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCG-AATGAAA
**
50599 ATCGCAA--CG-A-GGGA
1 ATCGCAATGCGAATGAAA
50613 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCG-AATGAAA
*
50632 ATCGCAACGCGAAT
1 ATCGCAATGCGAAT
50646 TTTATTTCGC
Statistics
Matches: 63, Mismatches: 7, Indels: 21
0.69 0.08 0.23
Matches are distributed among these distances:
14 19 0.30
15 2 0.03
16 4 0.06
17 4 0.06
18 5 0.08
19 29 0.46
ACGTcount: A:0.42, C:0.19, G:0.24, T:0.14
Consensus pattern (18 bp):
ATCGCAATGCGAATGAAA
Found at i:50589 original size:33 final size:33
Alignment explanation
Indices: 50547--50640 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
50537 GGAAATTACT
*
50547 ATCGCAATGCGATATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
50580 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
50613 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
50641 CGAATTTTAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:50662 original size:19 final size:21
Alignment explanation
Indices: 50640--50682 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
50630 AAATCGCAAC
50640 GCGAATTTT-A-TTTCGCGTT
1 GCGAATTTTCATTTTCGCGTT
50659 GCG-ATTTTCATTTTCGCGTT
1 GCGAATTTTCATTTTCGCGTT
50679 GCGA
1 GCGA
50683 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 5 0.24
19 4 0.19
20 12 0.57
ACGTcount: A:0.14, C:0.19, G:0.23, T:0.44
Consensus pattern (21 bp):
GCGAATTTTCATTTTCGCGTT
Found at i:50667 original size:14 final size:14
Alignment explanation
Indices: 50668--50701 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
50658 TGCGATTTTC
50668 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
50682 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
50696 ATTTTC
1 ATTTTC
50702 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:50842 original size:14 final size:14
Alignment explanation
Indices: 50823--50859 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
50813 CATCAATTAA
50823 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
50837 ACAAATCACCTTTT
1 ACAAATCAACTTTT
50851 ACAAATCAA
1 ACAAATCAA
50860 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:54382 original size:20 final size:19
Alignment explanation
Indices: 54337--54541 Score: 178
Period size: 20 Copynumber: 11.1 Consensus size: 19
54327 TCTTTTGGTT
*
54337 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
54356 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
54376 GGAAATGACTATCGCAACGC
1 -GAAATGAAAATCGCAACGC
**
54396 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
54414 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** **
54430 GAAATGACTATCGTGAC-C
1 GAAATGAAAATCGCAACGC
*
54448 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
54463 GAAATGAAAATCGCAACTGC
1 GAAATGAAAATCGCAAC-GC
*
54483 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
54502 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
54521 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
54540 GA
1 GA
54542 TTTTGGTTTC
Statistics
Matches: 156, Mismatches: 17, Indels: 26
0.78 0.09 0.13
Matches are distributed among these distances:
14 18 0.12
15 3 0.02
16 2 0.01
17 1 0.01
18 4 0.03
19 61 0.39
20 65 0.42
21 2 0.01
ACGTcount: A:0.43, C:0.21, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:54439 original size:33 final size:33
Alignment explanation
Indices: 54386--54479 Score: 125
Period size: 33 Copynumber: 2.8 Consensus size: 33
54376 GGAAATGACT
* *
54386 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAACGC-GAAATGACTATCGCAACCAGACA
**
54420 ATCGCAACGCGAAATGACTATCGTGACCAGACA
1 ATCGCAACGCGAAATGACTATCGCAACCAGACA
**
54453 ATCGCAACGCGAAATGAAAATCGCAAC
1 ATCGCAACGCGAAATGACTATCGCAAC
54480 TGCGAAATAA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 42 0.81
34 10 0.19
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (33 bp):
ATCGCAACGCGAAATGACTATCGCAACCAGACA
Found at i:54476 original size:19 final size:19
Alignment explanation
Indices: 54452--54541 Score: 153
Period size: 19 Copynumber: 4.7 Consensus size: 19
54442 GTGACCAGAC
54452 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
54471 AATCGCAACTGCGAAATAAA
1 AATCGCAAC-GCGAAATGAA
54491 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
54510 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
54529 AATCGCAATGCGA
1 AATCGCAACGCGA
54542 TTTTGGTTTC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
19 49 0.73
20 18 0.27
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.12
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:54506 original size:39 final size:38
Alignment explanation
Indices: 54452--54541 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 38
54442 GTGACCAGAC
54452 AATCGCAACGCGAAATGAAAATCGCAACTGCGAAATAAA
1 AATCGCAACGCGAAATGAAAATCGCAAC-GCGAAATAAA
*
54491 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATAAA
*
54529 AATCGCAATGCGA
1 AATCGCAACGCGA
54542 TTTTGGTTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 21 0.43
39 28 0.57
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.12
Consensus pattern (38 bp):
AATCGCAACGCGAAATGAAAATCGCAACGCGAAATAAA
Found at i:54570 original size:19 final size:19
Alignment explanation
Indices: 54537--54617 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
54527 AAAATCGCAA
**
54537 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
54556 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
*
54575 TGCGA---TTA--TCTCGT
1 TGCGATTTTTATTTCGCGT
**
54589 TGCGATAGTTATTTTCGCGT
1 TGCGATTTTTA-TTTCGCGT
54609 TGCGATTTT
1 TGCGATTTT
54618 CATTCTTGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
14 10 0.20
16 3 0.06
17 3 0.06
19 22 0.44
20 12 0.24
ACGTcount: A:0.11, C:0.16, G:0.25, T:0.48
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:55222 original size:20 final size:20
Alignment explanation
Indices: 55137--55250 Score: 111
Period size: 20 Copynumber: 5.7 Consensus size: 20
55127 CGCTATGTAA
* * *
55137 ATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATAGTCAGT
* *
55157 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
55177 ATCTCGTTGCGATTTTATATT
1 ATCGCATTGCGATAGT-CAGT
*
55198 ATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGATAGTCAGT
55218 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
55238 ATCGCATTGCGAT
1 ATCGCATTGCGAT
55251 TTTCCCAATT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
20 65 0.82
21 14 0.18
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:55235 original size:61 final size:61
Alignment explanation
Indices: 55137--55253 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
55127 CGCTATGTAA
* * * * *
55137 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTATATT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTATATT
* * *
55198 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT
55254 CCCAATTCGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTATATT
Found at i:55269 original size:61 final size:61
Alignment explanation
Indices: 55137--55271 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 61
55127 CGCTATGTAA
* * * * * * *
55137 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTATATT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTACAAT
* * * *
55198 ATCGCATTGCGATAGTAAGTATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-ACAAT
55260 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
55272 TTACTTATTC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 59 0.97
62 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTACAAT
Found at i:55361 original size:21 final size:21
Alignment explanation
Indices: 55321--55361 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
55311 ATTGTATACC
**
55321 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
55342 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
55362 ACGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:55581 original size:15 final size:15
Alignment explanation
Indices: 55561--55594 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
55551 AAAATCTACA
*
55561 ATAAATTAATGCAGT
1 ATAAATAAATGCAGT
55576 ATAAATAAATGCAGT
1 ATAAATAAATGCAGT
55591 ATAA
1 ATAA
55595 TTATGGAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (15 bp):
ATAAATAAATGCAGT
Found at i:56586 original size:186 final size:187
Alignment explanation
Indices: 56266--56659 Score: 675
Period size: 186 Copynumber: 2.1 Consensus size: 187
56256 TAACCGAAAT
*
56266 AAAATTTTAAATATATTATATATAACATATGGGCTCAACCCAAACCATTTAAAACCCAATTAATA
1 AAAATATTAAATATATTATATATAACATATGGGCTCAACCCAAACCATTTAAAACCCAATTAATA
56331 ATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAAATAATTAAAAATTTTATATAAAATT
66 ATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAAATAATTAAAAATTTTATATAAAATT
*
56396 TTTATTTTATAATTATATATTATTTAAATTAATTGTAAACT-ATTTTTCTGAATTAA
131 TTTATTTTATAATTATATATTATTTAAATTAATTATAAACTGATTTTTCTGAATTAA
* *
56452 AAAATATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACTCAATTAATA
1 AAAATATTAAATATATTATATATAACATATGGGCTCAACCCAAACCATTTAAAACCCAATTAATA
*
56517 ATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAATTTTATATAAAATT
66 ATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAAATAATTAAAAATTTTATATAAAATT
* * * *
56582 TTTATTTTATAATTATATATTATTTAAATTAATTATAACCTGTTTTTTTTGAATTAT
131 TTTATTTTATAATTATATATTATTTAAATTAATTATAAACTGATTTTTCTGAATTAA
* *
56639 AAAATATTTAAT-TTTTATATA
1 AAAATATTAAATATATTATATA
56660 AATTAGAAAA
Statistics
Matches: 196, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
186 173 0.88
187 23 0.12
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.42
Consensus pattern (187 bp):
AAAATATTAAATATATTATATATAACATATGGGCTCAACCCAAACCATTTAAAACCCAATTAATA
ATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAAATAATTAAAAATTTTATATAAAATT
TTTATTTTATAATTATATATTATTTAAATTAATTATAAACTGATTTTTCTGAATTAA
Found at i:58274 original size:61 final size:58
Alignment explanation
Indices: 58197--58356 Score: 153
Period size: 60 Copynumber: 2.7 Consensus size: 58
58187 TTGAGATAAA
* * * *
58197 AAAATGAAATGTTCAAAAAGTTTGAGGATCAATTTAGAATAAATTCTATATTTTGGGGATG
1 AAAATGAAAAGTTC-AAAAGTTTGAGGA-CAATTTAGAATAAAGTC-ATATTTTAGGAATG
* * * *
58258 AAATTGAAAAGTTCAAAAGTTTAAGGACTAATTTAAAATTATAGTCATATTTTAGGAATG
1 AAAATGAAAAGTTCAAAAGTTTGAGGAC-AATTTAGAA-TAAAGTCATATTTTAGGAATG
*
58318 AAAATGAAATA-TTTAAAAGTTTCGA-GACCAATTTAGAAT
1 AAAATGAAA-AGTTCAAAAGTTT-GAGGA-CAATTTAGAAT
58357 GAGAGTTATG
Statistics
Matches: 82, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
59 2 0.02
60 60 0.73
61 20 0.24
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.34
Consensus pattern (58 bp):
AAAATGAAAAGTTCAAAAGTTTGAGGACAATTTAGAATAAAGTCATATTTTAGGAATG
Found at i:61255 original size:6 final size:6
Alignment explanation
Indices: 61246--61271 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
61236 AAACATTTAT
61246 CTCAAA CTCAAA CTCAAA CTCAAA CT
1 CTCAAA CTCAAA CTCAAA CTCAAA CT
61272 AGATTGAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (6 bp):
CTCAAA
Found at i:63011 original size:62 final size:62
Alignment explanation
Indices: 62914--63037 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
62904 TCCAAGATAA
62914 ATTTGAAGGTGCCTTATTTTGCTAATTAATTATTTTGTTTGCATTATTGATCTAATTTTGCG
1 ATTTGAAGGTGCCTTATTTTGCTAATTAATTATTTTGTTTGCATTATTGATCTAATTTTGCG
62976 ATTTGAAGGTGCCTTATTTTGCTAATTAATTATTTTGTTTGCATTATTGATCTAATTTTGCG
1 ATTTGAAGGTGCCTTATTTTGCTAATTAATTATTTTGTTTGCATTATTGATCTAATTTTGCG
63038 GTAAAAGAAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.23, C:0.10, G:0.16, T:0.52
Consensus pattern (62 bp):
ATTTGAAGGTGCCTTATTTTGCTAATTAATTATTTTGTTTGCATTATTGATCTAATTTTGCG
Found at i:63031 original size:30 final size:30
Alignment explanation
Indices: 62935--63032 Score: 78
Period size: 30 Copynumber: 3.2 Consensus size: 30
62925 CCTTATTTTG
62935 CTAATTAATTATTTTGTTTGCATTATTGAT
1 CTAATTAATTATTTTGTTTGCATTATTGAT
** * *
62965 CTAATT--TTGCGA-TTTGAAGGTGCCTTATT-TT
1 CTAATTAATT---ATTTTG--TTTGCATTATTGAT
62996 GCTAATTAATTATTTTGTTTGCATTATTGAT
1 -CTAATTAATTATTTTGTTTGCATTATTGAT
63027 CTAATT
1 CTAATT
63033 TTGCGGTAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 20
0.64 0.10 0.26
Matches are distributed among these distances:
28 2 0.04
30 24 0.48
31 4 0.08
32 18 0.36
34 2 0.04
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.53
Consensus pattern (30 bp):
CTAATTAATTATTTTGTTTGCATTATTGAT
Found at i:64364 original size:27 final size:27
Alignment explanation
Indices: 64313--64373 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
64303 TTTCGTCCAT
* **
64313 CTAAAATTTTATAATTTATTTCCT-AC
1 CTAAAATTTTATAATTCATCCCCTAAC
*
64339 TTAAAATTTTATAAATTCATCCCCTAAC
1 CTAAAATTTTAT-AATTCATCCCCTAAC
64367 CTAAAAT
1 CTAAAAT
64374 CCTACATTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 11 0.39
27 9 0.32
28 8 0.29
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.43
Consensus pattern (27 bp):
CTAAAATTTTATAATTCATCCCCTAAC
Found at i:67216 original size:29 final size:29
Alignment explanation
Indices: 67115--67208 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
67105 CTTAACACAA
*
67115 TTTAACCATTCATCTTTTACTCAATAGTG
1 TTTAACCATTCATCTTTTACTCAACAGTG
67144 TTTAACCATTCATCTTTTACTCAACAGTG
1 TTTAACCATTCATCTTTTACTCAACAGTG
*
67173 TTTAACCATTCATCTTTTCCTCAACAGTG
1 TTTAACCATTCATCTTTTACTCAACAGTG
67202 TTTAACC
1 TTTAACC
67209 GCTCATCTAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.43
Consensus pattern (29 bp):
TTTAACCATTCATCTTTTACTCAACAGTG
Found at i:67524 original size:45 final size:44
Alignment explanation
Indices: 67460--67682 Score: 189
Period size: 45 Copynumber: 5.5 Consensus size: 44
67450 TTTTATGTTG
67460 ATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTTCAACTTTGGCAT-CTTTCATGCCA
*
67505 ATAATGCACCCATATGCA-TT--A--TT--C-T-TTT-ATGCCG
1 ATAATGCACCCATATGCATTTCAACTTTGGCATCTTTCATGCCA
* **
67539 ATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTTCAACTTTGGCAT-CTTTCATGCCA
* *
67584 ATAATGCACCCATATGC-GTT--A--TT--C-T-TTT-ATGCCG
1 ATAATGCACCCATATGCATTTCAACTTTGGCATCTTTCATGCCA
* * **
67618 ACAATGCACCCATATGCATTTCATCTAAGGCATCATTTCATGCCA
1 ATAATGCACCCATATGCATTTCAACTTTGGCATC-TTTCATGCCA
67663 ATAATGCACCCATATGCATT
1 ATAATGCACCCATATGCATT
67683 ATTCTTTTAT
Statistics
Matches: 139, Mismatches: 17, Indels: 44
0.69 0.09 0.22
Matches are distributed among these distances:
34 44 0.32
35 10 0.07
37 2 0.01
38 2 0.01
40 2 0.01
41 2 0.01
42 3 0.02
44 10 0.07
45 64 0.46
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (44 bp):
ATAATGCACCCATATGCATTTCAACTTTGGCATCTTTCATGCCA
Found at i:67537 original size:34 final size:34
Alignment explanation
Indices: 67494--67692 Score: 146
Period size: 34 Copynumber: 5.2 Consensus size: 34
67484 CTTTGGCATC
*
67494 CTTTCATGCCAATAATGCACCCATATGCATTATT
1 CTTTTATGCCAATAATGCACCCATATGCATTATT
*
67528 CTTTTATGCCGATAATGCACCCATATGCATTTCAGCTAAGGCAT
1 CTTTTATGCCAATAATGCACCCATATGCA-TT-A--T------T
* *
67572 CCTTTCATGCCAATAATGCACCCATATGCGTTATT
1 -CTTTTATGCCAATAATGCACCCATATGCATTATT
* *
67607 CTTTTATGCCGACAATGCACCCATATGCATTTCATCT
1 CTTTTATGCCAATAATGCACCCATATGCA-TT-AT-T
67644 AAGGCATCATTTCATGCCAATAATGCACCCATATGCATTATT
1 ----C-T--TTT-ATGCCAATAATGCACCCATATGCATTATT
67686 CTTTTAT
1 CTTTTAT
67693 TCATTTGTTC
Statistics
Matches: 132, Mismatches: 11, Indels: 44
0.71 0.06 0.24
Matches are distributed among these distances:
34 54 0.41
35 8 0.06
36 3 0.02
37 2 0.02
38 2 0.02
41 2 0.02
42 2 0.02
43 3 0.02
44 8 0.06
45 48 0.36
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.35
Consensus pattern (34 bp):
CTTTTATGCCAATAATGCACCCATATGCATTATT
Found at i:67580 original size:79 final size:79
Alignment explanation
Indices: 67449--67692 Score: 407
Period size: 79 Copynumber: 3.1 Consensus size: 79
67439 TTATAGTATA
** **
67449 CTTTTATGTTGATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGCCGATAATGCACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
67514 CCATATGCATTATT
66 CCATATGCATTATT
*
67528 CTTTTATGCCGATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGCCGATAATGCACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
*
67593 CCATATGCGTTATT
66 CCATATGCATTATT
* * *
67607 CTTTTATGCCGACAATGCACCCATATGCATTTCATCTAAGGCATCATTTCATGCCAATAATGCAC
1 CTTTTATGCCGATAATGCACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
67672 CCATATGCATTATT
66 CCATATGCATTATT
67686 CTTTTAT
1 CTTTTAT
67693 TCATTTGTTC
Statistics
Matches: 155, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 155 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (79 bp):
CTTTTATGCCGATAATGCACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
CCATATGCATTATT
Found at i:68014 original size:58 final size:58
Alignment explanation
Indices: 67945--68160 Score: 351
Period size: 58 Copynumber: 3.7 Consensus size: 58
67935 TCCCATGCGA
* * *
67945 AAATTCATACACTTAGTATGAGTTTATTATCTTTTTGCACATAAAGTGCCCAATATGG
1 AAATTCATACACTTAGTATGAATTTCTTATCTTTTTGCACATAAAGTGCCCAATACGG
*
68003 AAATTCATACACTTAGTATGAATTTCTTATCTTTTTGCACATAAAGTGCCCAATACGA
1 AAATTCATACACTTAGTATGAATTTCTTATCTTTTTGCACATAAAGTGCCCAATACGG
* * *
68061 AAATTCATACACTTAGTATAAATTTCTTATCTTTTTTCACATAAAGTTCCCAATACGG
1 AAATTCATACACTTAGTATGAATTTCTTATCTTTTTGCACATAAAGTGCCCAATACGG
*
68119 AAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACA
1 AAATTCATACACTTAGTATGAATTTCTTATC-TTTTTGCACA
68161 CTTATTGCCA
Statistics
Matches: 146, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
58 137 0.94
59 9 0.06
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (58 bp):
AAATTCATACACTTAGTATGAATTTCTTATCTTTTTGCACATAAAGTGCCCAATACGG
Found at i:72253 original size:58 final size:58
Alignment explanation
Indices: 72188--72297 Score: 220
Period size: 58 Copynumber: 1.9 Consensus size: 58
72178 AGTCCATTAT
72188 TCTTTTACTCAACAGTGTTTAACCATTCATCTTTTACTCAACAATGTTTAACCATTCC
1 TCTTTTACTCAACAGTGTTTAACCATTCATCTTTTACTCAACAATGTTTAACCATTCC
72246 TCTTTTACTCAACAGTGTTTAACCATTCATCTTTTACTCAACAATGTTTAAC
1 TCTTTTACTCAACAGTGTTTAACCATTCATCTTTTACTCAACAATGTTTAAC
72298 AGCTCATCTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.28, C:0.25, G:0.05, T:0.42
Consensus pattern (58 bp):
TCTTTTACTCAACAGTGTTTAACCATTCATCTTTTACTCAACAATGTTTAACCATTCC
Found at i:72306 original size:29 final size:29
Alignment explanation
Indices: 72188--72297 Score: 193
Period size: 29 Copynumber: 3.8 Consensus size: 29
72178 AGTCCATTAT
*
72188 TCTTTTACTCAACAGTGTTTAACCATTCA
1 TCTTTTACTCAACAATGTTTAACCATTCA
*
72217 TCTTTTACTCAACAATGTTTAACCATTCC
1 TCTTTTACTCAACAATGTTTAACCATTCA
*
72246 TCTTTTACTCAACAGTGTTTAACCATTCA
1 TCTTTTACTCAACAATGTTTAACCATTCA
72275 TCTTTTACTCAACAATGTTTAAC
1 TCTTTTACTCAACAATGTTTAAC
72298 AGCTCATCTA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 76 1.00
ACGTcount: A:0.28, C:0.25, G:0.05, T:0.42
Consensus pattern (29 bp):
TCTTTTACTCAACAATGTTTAACCATTCA
Found at i:72631 original size:45 final size:45
Alignment explanation
Indices: 72552--72657 Score: 140
Period size: 45 Copynumber: 2.4 Consensus size: 45
72542 TTTTATATTG
* * ** *
72552 ATAATACACCCATGTGCATTTCAACTTTGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTTCAACTAAGACATCCTTTCATGCCA
* *
72597 ATAGTGCACCCATATGCATTTCAGCTAAGACATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTTCAACTAAGACATCCTTTCATGCCA
*
72642 ATAATGCACACATATG
1 ATAATGCACCCATATG
72658 AATTATTCTT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (45 bp):
ATAATGCACCCATATGCATTTCAACTAAGACATCCTTTCATGCCA
Found at i:72742 original size:79 final size:79
Alignment explanation
Indices: 72586--72906 Score: 482
Period size: 79 Copynumber: 4.1 Consensus size: 79
72576 CTTTGGCATC
* * * * *
72586 CTTTCATGCCAATAGTGCACCCATATGCATTTCAGCTAAGACATCCTTTCATGCCAATAATGCAC
1 CTTTTATGCCGATAATGCACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
* *
72651 ACATATGAATTATT
66 CCATATGCATTATT
* * * *
72665 CTTTTATACCGATAATACACCTATATGCATTTCAACTAAGGCATCCTTTTATGCCAATAATGCAC
1 CTTTTATGCCGATAATGCACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
72730 CCATATGCATTATT
66 CCATATGCATTATT
* *
72744 CTTTTATGCCGATAATGCACCCATATTCATTT-AAGCTAAGGCAACCTTTCATGCCAATAATGCA
1 CTTTTATGCCGATAATGCACCCATATGCATTTCAA-CTAAGGCATCCTTTCATGCCAATAATGCA
72808 CCCATATGCATTATT
65 CCCATATGCATTATT
* *
72823 CTTTTATGCCGATAATGCACCCATATGTATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGCCGATAATGCACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
72888 CCATATGCATTATT
66 CCATATGCATTATT
*
72902 TTTTT
1 CTTTT
72907 TAATTATTTG
Statistics
Matches: 218, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
78 2 0.01
79 215 0.99
80 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.35
Consensus pattern (79 bp):
CTTTTATGCCGATAATGCACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
CCATATGCATTATT
Found at i:72748 original size:34 final size:34
Alignment explanation
Indices: 72710--72849 Score: 136
Period size: 34 Copynumber: 3.8 Consensus size: 34
72700 CTAAGGCATC
72710 CTTTTATGCCAATAATGCACCCATATGCATTATT
1 CTTTTATGCCAATAATGCACCCATATGCATTATT
* * *
72744 CTTTTATGCCGATAATGCACCCATATTCATTTAAGCTAAGGCAAC
1 CTTTTATGCCAATAATGCACCCATATGCA-TT-A--T-------T
*
72789 CTTTCATGCCAATAATGCACCCATATGCATTATT
1 CTTTTATGCCAATAATGCACCCATATGCATTATT
*
72823 CTTTTATGCCGATAATGCACCCATATG
1 CTTTTATGCCAATAATGCACCCATATG
72850 TATTTCAGCT
Statistics
Matches: 86, Mismatches: 9, Indels: 22
0.74 0.08 0.19
Matches are distributed among these distances:
34 52 0.60
35 2 0.02
36 1 0.01
38 1 0.01
41 1 0.01
43 1 0.01
44 2 0.02
45 26 0.30
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.34
Consensus pattern (34 bp):
CTTTTATGCCAATAATGCACCCATATGCATTATT
Found at i:72813 original size:45 final size:43
Alignment explanation
Indices: 72744--72898 Score: 148
Period size: 45 Copynumber: 3.7 Consensus size: 43
72734 ATGCATTATT
* * *
72744 CTTTTATGCCGATAATGCACCCATATTCATTTAAGCTAAGGCAAC
1 CTTTCATGCCAATAATGCACCCATATGCATTT-AGCTAAGGC-AC
*
72789 CTTTCATGCCAATAATGCACCCATATGCA-TTA--T------T
1 CTTTCATGCCAATAATGCACCCATATGCATTTAGCTAAGGCAC
* * *
72823 CTTTTATGCCGATAATGCACCCATATGTATTTCAGCTAAGGCATC
1 CTTTCATGCCAATAATGCACCCATATGCATTT-AGCTAAGGCA-C
72868 CTTTCATGCCAATAATGCACCCATATGCATT
1 CTTTCATGCCAATAATGCACCCATATGCATT
72899 ATTTTTTTTA
Statistics
Matches: 88, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
34 26 0.30
35 2 0.02
36 1 0.01
38 1 0.01
41 1 0.01
43 1 0.01
44 2 0.02
45 54 0.61
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (43 bp):
CTTTCATGCCAATAATGCACCCATATGCATTTAGCTAAGGCAC
Found at i:73439 original size:58 final size:58
Alignment explanation
Indices: 73362--73570 Score: 348
Period size: 58 Copynumber: 3.6 Consensus size: 58
73352 CATATTTCCC
* *
73362 ATACGTAAATTCATACACTTAGTATGAGTTTCTTATCTTTTTTCACATAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTATCTTTTTTCACATAAAGTGCCCA
*
73420 ATACAGAAATTCATACACTTAGTATGAATTTCTTAT-TTTTTTGCACATAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTATCTTTTTT-CACATAAAGTGCCCA
* *
73478 ATACGGAAATTCATACACTTAGTATAAATTTCTTATCTTTTTGCACATAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTATCTTTTTTCACATAAAGTGCCCA
*
73536 ATACGGAAATTCATACACTTAGCATGAATTTCTTA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTA
73571 ACATTTTTGC
Statistics
Matches: 141, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
57 6 0.04
58 130 0.92
59 5 0.04
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (58 bp):
ATACGGAAATTCATACACTTAGTATGAATTTCTTATCTTTTTTCACATAAAGTGCCCA
Found at i:74090 original size:21 final size:21
Alignment explanation
Indices: 74051--74090 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
74041 TACCTTGTCG
*
74051 GTATCGATACTGATTAAATCA
1 GTATCGATACTGATCAAATCA
74072 GTATCGATACT-ACTCAAAT
1 GTATCGATACTGA-TCAAAT
74091 AATTCATCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (21 bp):
GTATCGATACTGATCAAATCA
Found at i:75757 original size:20 final size:20
Alignment explanation
Indices: 75732--75770 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
75722 GGGCTTGGTA
75732 GTTATCGGTAGTTAATAGTG
1 GTTATCGGTAGTTAATAGTG
75752 GTTATCGGTAGTTAATAGT
1 GTTATCGGTAGTTAATAGT
75771 TTTAAGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.28, T:0.41
Consensus pattern (20 bp):
GTTATCGGTAGTTAATAGTG
Found at i:76328 original size:3 final size:3
Alignment explanation
Indices: 76320--76396 Score: 154
Period size: 3 Copynumber: 25.7 Consensus size: 3
76310 TTATTTTTAA
76320 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
76368 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
76397 AATTTCATTT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:78140 original size:19 final size:19
Alignment explanation
Indices: 78116--78174 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
78106 TGAGCATGTG
78116 TGTATGAGTTATATGTTAT
1 TGTATGAGTTATATGTTAT
* *
78135 TGTATGTGTGTGACATG--AT
1 TGTATGAGT-T-ATATGTTAT
*
78154 TGTATGA-ATATATGTTAT
1 TGTATGAGTTATATGTTAT
78172 TGT
1 TGT
78175 GATAAGATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 9
0.69 0.11 0.20
Matches are distributed among these distances:
16 4 0.13
17 1 0.03
18 5 0.16
19 16 0.52
20 1 0.03
21 4 0.13
ACGTcount: A:0.25, C:0.02, G:0.24, T:0.49
Consensus pattern (19 bp):
TGTATGAGTTATATGTTAT
Found at i:81590 original size:11 final size:11
Alignment explanation
Indices: 81574--81605 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
81564 GGACAGTGAG
81574 AAAGCTTAAGT
1 AAAGCTTAAGT
81585 AAAGCTTAAGT
1 AAAGCTTAAGT
81596 AAAGCTTAAG
1 AAAGCTTAAG
81606 GTAGCTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (11 bp):
AAAGCTTAAGT
Found at i:82601 original size:20 final size:21
Alignment explanation
Indices: 82569--82624 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
82559 GAGGGTTCAT
*
82569 AGGTCCTTTGGGACA-TACAG
1 AGGTCCTTCGGGACATTACAG
*
82589 AGTTCCTTCGGGACATTACAG
1 AGGTCCTTCGGGACATTACAG
82610 AGGTCCTTCGGGACA
1 AGGTCCTTCGGGACA
82625 AATTTCACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 13 0.41
21 19 0.59
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (21 bp):
AGGTCCTTCGGGACATTACAG
Found at i:83504 original size:2 final size:2
Alignment explanation
Indices: 83497--83545 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
83487 GACTGTTCCG
*
83497 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83539 AT AT AT A
1 AT AT AT A
83546 ATTATGTGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:84547 original size:20 final size:20
Alignment explanation
Indices: 84510--84546 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
84500 AAAACAAATG
84510 AACGAACATAAACAAAAACA
1 AACGAACATAAACAAAAACA
*
84530 AACGAA-ATGAACAAAAA
1 AACGAACATAAACAAAAA
84547 ATTAATTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.70, C:0.16, G:0.08, T:0.05
Consensus pattern (20 bp):
AACGAACATAAACAAAAACA
Found at i:96968 original size:3 final size:3
Alignment explanation
Indices: 96960--97006 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
96950 GTAAAATGTA
* *
96960 AAT AAT AAT AGT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97007 ATAGGGACAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:97295 original size:81 final size:82
Alignment explanation
Indices: 97132--97313 Score: 253
Period size: 81 Copynumber: 2.2 Consensus size: 82
97122 GGGAAATCCT
**
97132 CTCCACTCTTCTTTCAGGGGAGATCAGCCTTGATCTGTTCCACTTTTTCGGGTAGTCAGATCAAT
1 CTCCACTCTTCTTTCAGGGGAGATCAAACTTGATCTGTTCCACTTTTTCGGGTAGTCAGATCAAT
* *
97197 TTTGGAAGACTGTTATG
66 TTTGGAAAACTGGTATG
* * * *
97214 CTCCACTCTTCTTTTAGGGGAGATCAAACTTGA-CTTTTTCC-TTTTTTCGGGTAGTTAGATCAA
1 CTCCACTCTTCTTTCAGGGGAGATCAAACTTGATC-TGTTCCACTTTTTCGGGTAGTCAGATCAA
97277 TTTTGGAAAAC-GAGTATG
65 TTTTGGAAAACTG-GTATG
97295 CTCCACTCTTCTTTCAGGG
1 CTCCACTCTTCTTTCAGGG
97314 AGACAAGACT
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
80 1 0.01
81 53 0.60
82 35 0.39
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.38
Consensus pattern (82 bp):
CTCCACTCTTCTTTCAGGGGAGATCAAACTTGATCTGTTCCACTTTTTCGGGTAGTCAGATCAAT
TTTGGAAAACTGGTATG
Found at i:97450 original size:81 final size:82
Alignment explanation
Indices: 97360--97546 Score: 268
Period size: 88 Copynumber: 2.2 Consensus size: 82
97350 TGCATTCTTT
* * *
97360 TTTCAGGGAGATAAGACTTGATTTGTTCC-TCTTTTTCGGGTAGTCAGATCAATTTTGGAAAATG
1 TTTCAGGGAGATAAGACTTGATTTGTTCCTTCTTCTTCAGGTAGTCAGATCAATTTTCGAAAATG
97424 AGTCTGCTCCACTATTC
66 AGTCTGCTCCACTATTC
*
97441 TTTCAGGGAGATAAGATTTGATTTGTTCCTTTTTTTTCTTCTTCAGGTAGTCAGATCAATTTTCG
1 TTTCAGGGAGATAAGACTTGATTTGTTCC------TTCTTCTTCAGGTAGTCAGATCAATTTTCG
97506 AAAATGAGTCTGCTCCACTATTC
60 AAAATGAGTCTGCTCCACTATTC
*
97529 TTTCAAGGAGATAAGACT
1 TTTCAGGGAGATAAGACT
97547 CGAGAAATCT
Statistics
Matches: 93, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
81 28 0.30
88 65 0.70
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (82 bp):
TTTCAGGGAGATAAGACTTGATTTGTTCCTTCTTCTTCAGGTAGTCAGATCAATTTTCGAAAATG
AGTCTGCTCCACTATTC
Found at i:97558 original size:223 final size:217
Alignment explanation
Indices: 97138--97602 Score: 553
Period size: 223 Copynumber: 2.1 Consensus size: 217
97128 TCCTCTCCAC
* *
97138 TCTTCTTTCAGGGGAGATCAGCCTTGATCTGTTCCACTTTTTCGGGTAGTCAGATCAATTTTGGA
1 TCTTCTTTCAGGGGAGATAAGACTTGATCTGTTCCACTTTTTCGGGTAGTCAGATCAATTTTGGA
* * * * *
97203 AGACTGTTATGCTCCACTCTTCTTTTAGGGGAGATCAAACTTGACTTTTTCCTTTTTTCGGGTAG
66 AGAATGGTATGCTCCACTATTCTTTCAGGGGAGATCAAACTTGACTTTTTCCTTTTTTCAGGTAG
* * * *
97268 TTAGATCAATTTTGGAAAACGAGTATGCTCCACTCTTCTTTCAGGGAGACAAGACTCGAGAAATC
131 TCAGATCAATTTTCGAAAACGAGTATGCTCCACTATTCTTTCAAGGAGACAAGACTCGAGAAATC
97333 TTTGGAAGACGGTATGCTGCAT
196 TTTGGAAGACGGTATGCTGCAT
* * *
97355 TCTTTTTTCA-GGGAGATAAGACTTGATTTGTTCCTCTTTTTCGGGTAGTCAGATCAATTTTGGA
1 TCTTCTTTCAGGGGAGATAAGACTTGATCTGTTCCACTTTTTCGGGTAGTCAGATCAATTTTGGA
* *
97419 A-AATGAGTCTGCTCCACTATTCTTTCA-GGGAGAT-AAGATTTGA-TTTGTTCCTTTTTTTTCT
66 AGAATG-GTATGCTCCACTATTCTTTCAGGGGAGATCAA-ACTTGACTTT-TTCC------TT-T
* * *
97480 TCTTCAGGTAGTCAGATCAATTTTCGAAAATGAGTCTGCTCCACTATTCTTTCAAGGAGATAAGA
121 T-TTCAGGTAGTCAGATCAATTTTCGAAAACGAGTATGCTCCACTATTCTTTCAAGGAGACAAGA
* * * *
97545 CTCGAGAAATCTTTGGAAGGAGGGTCTGCTCCAC
185 CTCGAGAAATCTTTGGAA-GACGGTATGCTGCAT
* * *
97579 TCATCTTTAAGGGTAGATAAGACT
1 TCTTCTTTCAGGGGAGATAAGACT
97603 CGAGAATGAT
Statistics
Matches: 208, Mismatches: 27, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
214 5 0.02
215 19 0.09
216 68 0.33
217 9 0.04
221 2 0.01
222 2 0.01
223 73 0.35
224 18 0.09
225 12 0.06
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (217 bp):
TCTTCTTTCAGGGGAGATAAGACTTGATCTGTTCCACTTTTTCGGGTAGTCAGATCAATTTTGGA
AGAATGGTATGCTCCACTATTCTTTCAGGGGAGATCAAACTTGACTTTTTCCTTTTTTCAGGTAG
TCAGATCAATTTTCGAAAACGAGTATGCTCCACTATTCTTTCAAGGAGACAAGACTCGAGAAATC
TTTGGAAGACGGTATGCTGCAT
Found at i:98112 original size:89 final size:89
Alignment explanation
Indices: 97588--98112 Score: 598
Period size: 89 Copynumber: 5.9 Consensus size: 89
97578 CTCATCTTTA
* * *
97588 AGGGTAGATAAGACTCGAGAATGATTTGCTTCGA-TGCT-TCTTCAGGAAGACCAAATCTGAAAT
1 AGGG-AGATCAGACTCGAGATTGATTTGCTTC-ACTACTCT-TTCAGGAAGACCAAATCTGAAAT
* ** *
97651 AAGAATAATCTTTTCCACTACTCTTCC
63 AAGAAGAATCTACTCCTCTACTCTTCC
* * * * * * *
97678 -GAGAACATCAGACTCGAGATTGATTTGATTCTCTCCTTTTTCAGGAAGACCAAATTTGAAATAA
1 AG-GGAGATCAGACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTGAAATAA
* * *
97742 GAAAAATATGCT-CTACTACTCTTCC
65 GAAGAATCTACTCCT-CTACTCTTCC
* * * *
97767 GGGGATATCAGACTTGAGATTGACTTGCTTCACTACTCTTTCAGGAAGACCAAATCTGAAATAAG
1 AGGGAGATCAGACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTGAAATAAG
* * *
97832 AAGAATTTGCT-CTATTACTCTT-C
66 AAGAATCTACTCCT-CTACTCTTCC
* * *
97855 AGGGGAGATCAAACTCGAGATTGATCTT-CTTCGCTACTCTTTCGGGAAGACCAAATCTGAAATA
1 A-GGGAGATCAGACTCGAGATTGAT-TTGCTTCACTACTCTTTCAGGAAGACCAAATCTGAAATA
* * *
97919 AGAAGAATCAACTCATCTACTCTTCT
64 AGAAGAATCTACTCCTCTACTCTTCC
** *
97945 AGGGAGATCAGACTCGAGATTGATTTGCTTTGCCACTCTTTC-GAGAAGACCAAATCTGAAATAA
1 AGGGAGATCAGACTCGAGATTGATTTGCTTCACTACTCTTTCAG-GAAGACCAAATCTGAAATAA
98009 GAAGAATCTACTCCTCTACTCTTCC
65 GAAGAATCTACTCCTCTACTCTTCC
* *
98034 AGGGAGATCAAACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTAAAATAAG
1 AGGGAGATCAGACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTGAAATAAG
98099 AAGAATCTACTCCT
66 AAGAATCTACTCCT
98113 ACTCGAGATT
Statistics
Matches: 374, Mismatches: 49, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
88 5 0.01
89 361 0.97
90 8 0.02
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (89 bp):
AGGGAGATCAGACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTGAAATAAG
AAGAATCTACTCCTCTACTCTTCC
Found at i:98124 original size:68 final size:68
Alignment explanation
Indices: 98045--98180 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 68
98035 GGGAGATCAA
98045 ACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTAAAATAAGAAGAATCTACT
1 ACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTAAAATAAGAAGAATCTACT
98110 CCT
66 CCT
** * * *
98113 ACTCGAGATTGATTTGCTTTGCTACTCTTTCGGGAAGACCAAATCTAAAATAAGATGAATCTGCT
1 ACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTAAAATAAGAAGAATCTACT
98178 CCT
66 CCT
98181 CTAATCTTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31
Consensus pattern (68 bp):
ACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCAAATCTAAAATAAGAAGAATCTACT
CCT
Found at i:98232 original size:89 final size:89
Alignment explanation
Indices: 98113--98389 Score: 355
Period size: 89 Copynumber: 3.1 Consensus size: 89
98103 ATCTACTCCT
* * *
98113 ACTCGAGATTGATTTGCTTTGCTACTCTTTCGGGAAGACCAAATCTAAAATAAGATGAATCTGCT
1 ACTCGAGATTGATTTGCTTTGCTATTCTTTCGGGAAGACCAAATCTGAAATAAGATGAATATGCT
* * *
98178 CCTCTAATCTTTCGGGGAGTTTAG
66 CCTCTACTCTTTCGGGGAGATCAG
98202 ACTCGAGATTGATTTGCTTTGCTATTCTTTCGGGAAGACCAAATCTGAAATAAGATGAATATGCT
1 ACTCGAGATTGATTTGCTTTGCTATTCTTTCGGGAAGACCAAATCTGAAATAAGATGAATATGCT
98267 CCTCTACTC-TTCTGGGGAGATCAG
66 CCTCTACTCTTTC-GGGGAGATCAG
* * * * *
98291 ACTCAAGATTGATTTGATTCATTGC--TTCTTT-AGGAAGACCAAATCTGAAATAAGAAGAATTT
1 ACTCGAGATTGATTTG---CTTTGCTATTCTTTCGGGAAGACCAAATCTGAAATAAGATGAATAT
* * *
98353 GCTCCACTACTCTTTTGGGGAGATCAA
63 GCTCCTCTACTCTTTCGGGGAGATCAG
*
98380 ACTCAAGATT
1 ACTCGAGATT
98390 AGTTTTAGTA
Statistics
Matches: 169, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
88 3 0.02
89 153 0.91
90 8 0.05
92 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (89 bp):
ACTCGAGATTGATTTGCTTTGCTATTCTTTCGGGAAGACCAAATCTGAAATAAGATGAATATGCT
CCTCTACTCTTTCGGGGAGATCAG
Found at i:98242 original size:157 final size:157
Alignment explanation
Indices: 97956--98261 Score: 459
Period size: 157 Copynumber: 1.9 Consensus size: 157
97946 GGGAGATCAG
*
97956 ACTCGAGATTGATTTGCTTTGCCACTCTTTCGAGAAGACCAAATCTGAAATAAGAAGAATCTACT
1 ACTCGAGATTGATTTGCTTTGCCACTCTTTCGAGAAGACCAAATCTAAAATAAGAAGAATCTACT
*
98021 CCTCTACTCTTCCAGGGAGATCAAACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCA
66 CCTCTAATCTTCCAGGGAGATCAAACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCA
98086 AATCTAAAATAAGAAGAATCTACTCCT
131 AATCTAAAATAAGAAGAATCTACTCCT
* * * *
98113 ACTCGAGATTGATTTGCTTTGCTACTCTTTCGGGAAGACCAAATCTAAAATAAGATGAATCTGCT
1 ACTCGAGATTGATTTGCTTTGCCACTCTTTCGAGAAGACCAAATCTAAAATAAGAAGAATCTACT
* * * * * ** * *
98178 CCTCTAATCTTTCGGGGAGTTTAGACTCGAGATTGATTTGCTTTGCTATTCTTTCGGGAAGACCA
66 CCTCTAATCTTCCAGGGAGATCAAACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCA
* *
98243 AATCTGAAATAAGATGAAT
131 AATCTAAAATAAGAAGAAT
98262 ATGCTCCTCT
Statistics
Matches: 132, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
157 132 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (157 bp):
ACTCGAGATTGATTTGCTTTGCCACTCTTTCGAGAAGACCAAATCTAAAATAAGAAGAATCTACT
CCTCTAATCTTCCAGGGAGATCAAACTCGAGATTGATTTGCTTCACTACTCTTTCAGGAAGACCA
AATCTAAAATAAGAAGAATCTACTCCT
Found at i:98302 original size:246 final size:246
Alignment explanation
Indices: 97867--98350 Score: 704
Period size: 246 Copynumber: 2.0 Consensus size: 246
97857 GGGAGATCAA
*
97867 ACTCGAGATTGATCTTCTTCGCTACTCTTTCGGGAAGACCAAATCTGAAATAAGAAGAATCAACT
1 ACTCGAGATTGATCTTCTTCGCTACTCTTTCGGGAAGACCAAATCTAAAATAAGAAGAATCAACT
*
97932 CATCTACTCTTCTAGGGAGATCAGACTCGAGATTGATTTGCTTTGCCACTCTTTCGAGAAGACCA
66 CATCTAATCTTCTAGGGAGATCAGACTCGAGATTGATTTGCTTTGCCACTCTTTCGAGAAGACCA
* * *
97997 AATCTGAAATAAGAAGAATCTACTCCTCTACTCTTCCAGGGAGATCAAACTCGAGATTGATTTGC
131 AATCTGAAATAAGAAGAATATACTCCTCTACTCTTCCAGGGAGATCAAACTCAAGATTGATTTGA
98062 TTCACTAC-TCTTTCAGGAAGACCAAATCTAAAATAAGAAGAATCTACTCCT
196 TTCACTACTTCTTT-AGGAAGACCAAATCTAAAATAAGAAGAATCTACTCCT
* * **
98113 ACTCGAGATTGAT-TTGCTTTGCTACTCTTTCGGGAAGACCAAATCTAAAATAAGATGAATCTGC
1 ACTCGAGATTGATCTT-CTTCGCTACTCTTTCGGGAAGACCAAATCTAAAATAAGAAGAATCAAC
* * * * * * *
98177 TCCTCTAATCTT-TCGGGGAGTTTAGACTCGAGATTGATTTGCTTTGCTATTCTTTCGGGAAGAC
65 TCATCTAATCTTCT-AGGGAGATCAGACTCGAGATTGATTTGCTTTGCCACTCTTTCGAGAAGAC
* * ** *
98241 CAAATCTGAAATAAGATGAATATGCTCCTCTACTCTTCTGGGGAGATCAGACTCAAGATTGATTT
129 CAAATCTGAAATAAGAAGAATATACTCCTCTACTCTTCCAGGGAGATCAAACTCAAGATTGATTT
* * *
98306 GATTCATTGCTTCTTTAGGAAGACCAAATCTGAAATAAGAAGAAT
194 GATTCACTACTTCTTTAGGAAGACCAAATCTAAAATAAGAAGAAT
98351 TTGCTCCACT
Statistics
Matches: 211, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
245 3 0.01
246 203 0.96
247 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (246 bp):
ACTCGAGATTGATCTTCTTCGCTACTCTTTCGGGAAGACCAAATCTAAAATAAGAAGAATCAACT
CATCTAATCTTCTAGGGAGATCAGACTCGAGATTGATTTGCTTTGCCACTCTTTCGAGAAGACCA
AATCTGAAATAAGAAGAATATACTCCTCTACTCTTCCAGGGAGATCAAACTCAAGATTGATTTGA
TTCACTACTTCTTTAGGAAGACCAAATCTAAAATAAGAAGAATCTACTCCT
Found at i:104409 original size:148 final size:147
Alignment explanation
Indices: 104120--104416 Score: 535
Period size: 148 Copynumber: 2.0 Consensus size: 147
104110 TTTATTCTTT
104120 TATCAACCGTAGTCTACTTCTCACGTTCTTTGGAATAACATCTTCCACTTCGAGTAAATGTCTAA
1 TATCAACCGTAGTCTACTTCTCACGTTCTTTGGAATAACATCTTCCACTTCGAGTAAATGTCTAA
104185 CCTCATATGCTTCTTCAGTTTTTTTTCTACCTCTTCTTTTGTAGTCATATTTCCATGATACAACT
66 CCTCATATGCTTCTTCAGTTTTTTTTCTACCTCTTCTTTTGTAGTCATATTTCCATGAT--AACT
104250 TGTCATCTTATACATGAAC
129 TGTCATCTTATACATGAAC
104269 TATCAACCGTAGTCTACTTCTCACGTTCTTTGGAAT-ACATCTTCCACTTCGAGTAAATGTCTAA
1 TATCAACCGTAGTCTACTTCTCACGTTCTTTGGAATAACATCTTCCACTTCGAGTAAATGTCTAA
104333 CCTCATATGCTTCTTCAGTTTTTTTTCTACCTCTTCTATTTTGTAGTCATATTTCCATGAT-ACT
66 CCTCATATGCTTCTTCAGTTTTTTTTCTACCTCTTC--TTTTGTAGTCATATTTCCATGATAACT
104397 TGTCATCTTTATACATGAAC
129 TGTCATC-TTATACATGAAC
104417 ATGGATGAAG
Statistics
Matches: 145, Mismatches: 0, Indels: 7
0.95 0.00 0.05
Matches are distributed among these distances:
147 10 0.07
148 76 0.52
149 36 0.25
150 23 0.16
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (147 bp):
TATCAACCGTAGTCTACTTCTCACGTTCTTTGGAATAACATCTTCCACTTCGAGTAAATGTCTAA
CCTCATATGCTTCTTCAGTTTTTTTTCTACCTCTTCTTTTGTAGTCATATTTCCATGATAACTTG
TCATCTTATACATGAAC
Found at i:106963 original size:183 final size:183
Alignment explanation
Indices: 106637--107002 Score: 707
Period size: 183 Copynumber: 2.0 Consensus size: 183
106627 AGTTCTGATG
106637 ACTTTTGTTTGGATATCCATCTCTCCCAACTGTCTTGCAACACCACTTAATTGATTCATGTTTTA
1 ACTTTTGTTTGGATATCCATCTCTCCCAACTGTCTTGCAACACCACTTAATTGATTCATGTTTTA
106702 ATTATCACCTGATTCACATTTGTTTTCCAGTCCTCAAAGTGATTATTATCGTTCTGCCACTGCTG
66 ATTATCACCTGATTCACATTTGTTTTCCAGTCCTCAAAGTGATTATTATCGTTCTGCCACTGCTG
*
106767 TTGTGTTCTTCGAATAGTGCGTTCAAGACCAGTAATCTGTATATGACAACTTC
131 TTGTGTGCTTCGAATAGTGCGTTCAAGACCAGTAATCTGTATATGACAACTTC
106820 ACTTTTGTTTGGATATCCATCTCTCCCAACTGTCTTGCAACACCACTTAATTGATTCATGGTTTT
1 ACTTTTGTTTGGATATCCATCTCTCCCAACTGTCTTGCAACACCACTTAATTGATTCAT-GTTTT
106885 AATTATCACCTGATTCACATTTGTTTTCCAGTCCTCAAAGTGATTATTATCGTTCTGCCACTGCT
65 AATTATCACCTGATTCACATTTGTTTTCCAGTCCTCAAAGTGATTATTATCGTTCTGCCACTGCT
106950 GTTG-GTGCTTCGAATAGTGCGTTCAAGACCAGTAATCTGTATATGACAACTTC
130 GTTGTGTGCTTCGAATAGTGCGTTCAAGACCAGTAATCTGTATATGACAACTTC
107003 GTAAGGTAAC
Statistics
Matches: 181, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
183 107 0.59
184 74 0.41
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (183 bp):
ACTTTTGTTTGGATATCCATCTCTCCCAACTGTCTTGCAACACCACTTAATTGATTCATGTTTTA
ATTATCACCTGATTCACATTTGTTTTCCAGTCCTCAAAGTGATTATTATCGTTCTGCCACTGCTG
TTGTGTGCTTCGAATAGTGCGTTCAAGACCAGTAATCTGTATATGACAACTTC
Found at i:110265 original size:14 final size:14
Alignment explanation
Indices: 110248--110274 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
110238 AATACCTTTT
110248 AAAATAATTTTAAG
1 AAAATAATTTTAAG
110262 AAAATAATTTTAA
1 AAAATAATTTTAA
110275 AAGATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (14 bp):
AAAATAATTTTAAG
Found at i:121622 original size:15 final size:16
Alignment explanation
Indices: 121597--121628 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
121587 TTGTCTGAGA
121597 TATTATTATTATTATT
1 TATTATTATTATTATT
121613 TATT-TTATTATTATT
1 TATTATTATTATTATT
121628 T
1 T
121629 TGATTTTCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TATTATTATTATTATT
Found at i:123051 original size:20 final size:19
Alignment explanation
Indices: 123026--123066 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
123016 TGTTTTCTTG
*
123026 TTATTATACGCATGTATATT
1 TTATTA-ACGCATGGATATT
*
123046 TTATTAGCGCATGGATATT
1 TTATTAACGCATGGATATT
123065 TT
1 TT
123067 GCCAATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.49
Consensus pattern (19 bp):
TTATTAACGCATGGATATT
Found at i:127827 original size:2 final size:2
Alignment explanation
Indices: 127820--127861 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
127810 TTTCGTAAAT
127820 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
127862 GATTGACAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:129261 original size:2 final size:2
Alignment explanation
Indices: 129249--129301 Score: 97
Period size: 2 Copynumber: 26.0 Consensus size: 2
129239 TATTTGGTAC
129249 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
129292 AT AT AT AT AT
1 AT AT AT AT AT
129302 GCCCGCCAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 48 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:138812 original size:51 final size:50
Alignment explanation
Indices: 138757--138883 Score: 166
Period size: 51 Copynumber: 2.5 Consensus size: 50
138747 GATTTGGCGC
138757 CACGTGGAGTATAGCGCGCCCCCTG-TACCGCACTATACGCTGACTGGGTTA
1 CACGTGG-GTATAGCGCGCCCCCTGCT-CCGCACTATACGCTGACTGGGTTA
* * ** *
138808 CACGTGGGGTACAGTGCAACCCCTGCTCCGCGCTATACGCTGACTGGGTTA
1 CACGT-GGGTATAGCGCGCCCCCTGCTCCGCACTATACGCTGACTGGGTTA
138859 CACGTTGGGTATAGCGCGCCCCCTG
1 CACG-TGGGTATAGCGCGCCCCCTG
138884 ATCCATGCTA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
51 60 0.94
52 4 0.06
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.21
Consensus pattern (50 bp):
CACGTGGGTATAGCGCGCCCCCTGCTCCGCACTATACGCTGACTGGGTTA
Found at i:138894 original size:51 final size:50
Alignment explanation
Indices: 138757--138898 Score: 153
Period size: 51 Copynumber: 2.8 Consensus size: 50
138747 GATTTGGCGC
*
138757 CACG-TGGAGTATAGCGCGCCCCCTGTACCGCA-CTATACGCTGACTGGGTTA
1 CACGTTGG-GTATAGCGCGCCCCCTG-ATC-CAGCTATACGCTGACTGGGTTA
* * * ** * *
138808 CACGTGGGGTACAGTGCAACCCCTGCTCCGCGCTATACGCTGACTGGGTTA
1 CACGTTGGGTATAGCGCGCCCCCTGATCC-AGCTATACGCTGACTGGGTTA
138859 CACGTTGGGTATAGCGCGCCCCCTGATCCATGCTATACGC
1 CACGTTGGGTATAGCGCGCCCCCTGATCCA-GCTATACGC
138899 CACGTAGGGG
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 68 0.94
52 2 0.03
ACGTcount: A:0.18, C:0.32, G:0.27, T:0.22
Consensus pattern (50 bp):
CACGTTGGGTATAGCGCGCCCCCTGATCCAGCTATACGCTGACTGGGTTA
Found at i:139065 original size:12 final size:12
Alignment explanation
Indices: 139045--139081 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
139035 ACCTCTCGTT
139045 CTCGCATCTCTC
1 CTCGCATCTCTC
*
139057 CTTGCATCT-T-
1 CTCGCATCTCTC
139067 CTCGCATCTCTC
1 CTCGCATCTCTC
139079 CTC
1 CTC
139082 TCTTATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
10 8 0.38
11 2 0.10
12 11 0.52
ACGTcount: A:0.08, C:0.46, G:0.08, T:0.38
Consensus pattern (12 bp):
CTCGCATCTCTC
Found at i:142528 original size:35 final size:37
Alignment explanation
Indices: 142443--142545 Score: 103
Period size: 35 Copynumber: 2.9 Consensus size: 37
142433 ATTTGGTATT
*
142443 TAAATACAACAAACTTACAAT-AA-GA-ATTAAATGG
1 TAAATACAACAAAATTACAATAAATGATATTAAATGG
* *
142477 TAAATGATAACCAAATTACAATAAATGATATTAAATGG
1 TAAAT-ACAACAAAATTACAATAAATGATATTAAATGG
*
142515 T-AATA-AACAAAATTA-ACTGAAAT-ATATTAAA
1 TAAATACAACAAAATTACAAT-AAATGATATTAAA
142546 AACAAAGTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 10
0.80 0.07 0.14
Matches are distributed among these distances:
34 15 0.25
35 26 0.44
36 3 0.05
37 5 0.08
38 10 0.17
ACGTcount: A:0.56, C:0.09, G:0.08, T:0.27
Consensus pattern (37 bp):
TAAATACAACAAAATTACAATAAATGATATTAAATGG
Found at i:142771 original size:12 final size:12
Alignment explanation
Indices: 142744--142794 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
142734 ACTCCTCGCT
* *
142744 GTCATCATCATT
1 GTCATCATCGTC
142756 GTCATCATCGTC
1 GTCATCATCGTC
142768 GTCA-CTATCGTC
1 GTCATC-ATCGTC
* *
142780 ATCATCGTCGTC
1 GTCATCATCGTC
142792 GTC
1 GTC
142795 GTCCTGAGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (12 bp):
GTCATCATCGTC
Found at i:143185 original size:18 final size:18
Alignment explanation
Indices: 143137--143188 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
143127 GCGATGGCGC
*
143137 CATCATATATGGATGCGG
1 CATCATATATGGCTGCGG
143155 CATCATATATGGCTGCGG
1 CATCATATATGGCTGCGG
*
143173 TATCATATATGGCTGC
1 CATCATATATGGCTGC
143189 AGTGGCTGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (18 bp):
CATCATATATGGCTGCGG
Found at i:144776 original size:111 final size:111
Alignment explanation
Indices: 144634--144966 Score: 594
Period size: 111 Copynumber: 3.0 Consensus size: 111
144624 ATTACAAAAA
* *
144634 TTAATTCTTACTCTAATAATCATCCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
144699 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
*
144745 TTAATTCTTAATCTAATAATAATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
* * *
144810 AATTAATAGGTTAAAATGTTATCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
*
144856 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
*
144921 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
144967 ATGATTTCCA
Statistics
Matches: 210, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 210 1.00
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTCGAGATAT
Found at i:145309 original size:50 final size:50
Alignment explanation
Indices: 145255--145380 Score: 173
Period size: 50 Copynumber: 2.5 Consensus size: 50
145245 AGATACCCAG
* * * *
145255 GTATAGCGCAGATCAGGGGGTGCGCTATACCCACGTGGCGCCAGATCACC
1 GTATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAAC
*
145305 GTATATCGCGGGA-CAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAAC
1 GTATAGCGC-GGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAAC
* *
145355 GTATAGCGCGGTTCAGGGAGCGCGCT
1 GTATAGCGCGGATCAGGGGGCGCGCT
145381 TTACTGCTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
49 2 0.03
50 62 0.94
51 2 0.03
ACGTcount: A:0.21, C:0.29, G:0.34, T:0.16
Consensus pattern (50 bp):
GTATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAAC
Done.