genome.fa.s7745.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007745.1 Hibiscus syriacus cultivar Beakdansim tig00110008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  368767

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6903--6956	23	2.3	24	87	3	83	62	11	16	9	1.52
6903--6962	24	2.6	23	81	7	77	63	10	18	8	1.50
11157--11210	23	2.3	24	87	3	83	62	11	16	9	1.52
11157--11216	24	2.6	23	81	7	77	63	10	18	8	1.50
16582--16621	15	2.7	15	85	11	55	57	0	25	17	1.40
39054--39096	20	2.2	20	87	4	61	34	9	6	48	1.62
39677--39737	30	1.9	33	84	15	85	16	26	0	57	1.39
47034--47084	20	2.6	20	90	3	77	35	15	5	43	1.71
51214--51264	20	2.6	20	90	3	77	35	15	5	43	1.71
57115--57146	13	2.5	13	89	0	55	81	0	18	0	0.70
62594--62645	19	2.6	21	90	6	81	46	7	13	32	1.72
65996--66047	8	6.5	8	87	12	72	78	1	19	0	0.84
71561--71622	28	2.2	28	83	13	76	70	4	16	8	1.28
75545--75589	22	2.0	22	91	0	72	46	17	17	17	1.84
76735--76786	19	2.6	21	90	6	81	46	7	11	34	1.69
79263--79314	24	2.2	24	100	0	104	19	15	21	44	1.87
93879--93930	19	2.6	21	90	6	81	46	5	13	34	1.67
96989--97033	22	2.1	21	88	12	65	2	24	2	71	1.09
97747--97798	21	2.6	21	90	6	81	46	5	15	32	1.70
100898--100927	13	2.4	13	94	5	53	43	0	30	26	1.55
102779--102818	19	2.0	20	90	4	64	65	0	15	20	1.28
113809--113861	19	2.5	21	76	17	56	1	20	3	73	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113817--113864	19	2.5	20	86	6	64	2	20	4	72	1.11
114129--114168	19	2.0	20	95	4	73	62	0	15	22	1.32
121599--121653	23	2.3	25	81	12	71	41	3	1	52	1.29
128267--128312	23	2.0	23	83	8	58	36	6	6	50	1.54
129922--129992	30	2.3	31	77	18	76	71	4	16	7	1.24
132860--132905	23	2.0	23	83	8	58	36	6	8	47	1.60
138453--138653	101	2.0	101	99	0	393	31	16	13	37	1.89
144048--144087	19	2.1	19	90	4	62	22	17	0	60	1.37
144352--144416	10	6.8	10	72	19	50	76	3	18	1	0.99
144352--144416	19	3.4	19	79	12	64	76	3	18	1	0.99
151557--151608	21	2.6	21	81	6	63	28	17	7	46	1.75
152300--152348	18	2.8	17	84	9	62	79	0	14	6	0.91
153437--153476	15	2.7	15	85	11	55	57	0	25	17	1.40
155244--155295	21	2.6	21	81	6	63	28	17	7	46	1.75
155987--156035	18	2.8	17	84	9	62	79	0	14	6	0.91
159176--159228	21	2.6	21	85	5	65	35	11	7	45	1.69
159188--159227	21	2.0	21	95	5	73	35	10	7	47	1.65
162996--163049	23	2.3	24	87	3	83	62	11	16	9	1.52
162996--163055	24	2.6	23	81	7	77	63	10	18	8	1.50
168450--168488	15	2.6	14	84	11	51	58	0	23	17	1.38
173666--173697	16	2.0	16	100	0	64	56	18	25	0	1.42
174938--174982	23	1.9	24	90	4	74	68	0	13	17	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174928--174977	20	2.4	21	81	18	61	68	0	10	22	1.19
179218--179261	19	2.3	19	92	0	70	4	18	4	72	1.19
180863--180910	23	2.0	24	88	8	71	47	10	6	35	1.63
181310--181354	8	5.5	8	87	12	65	77	2	20	0	0.87
192621--192660	19	2.0	20	85	4	55	20	12	2	65	1.38
199846--199875	12	2.6	11	90	10	51	73	13	13	0	1.10
199858--199890	17	1.9	17	93	0	57	75	15	9	0	1.03
211146--211423	138	2.0	138	100	0	556	34	22	15	27	1.94
220704--220745	21	2.0	21	100	0	84	28	14	19	38	1.90
227577--227611	17	2.0	18	88	5	54	31	11	11	45	1.76
235962--235988	9	3.0	9	100	0	54	55	11	11	22	1.66
238473--238515	10	4.6	9	77	11	50	0	2	16	81	0.79
238489--238514	11	2.4	11	100	0	52	0	0	7	92	0.39
239361--239406	22	2.0	22	83	12	56	52	13	2	32	1.52
251678--251731	23	2.3	24	87	3	83	62	11	16	9	1.52
251678--251737	24	2.6	23	81	7	77	63	10	18	8	1.50
260369--260411	23	1.9	21	81	13	50	32	18	13	34	1.90
264859--264911	23	2.2	24	86	3	72	11	15	9	64	1.50
269632--269692	26	2.3	26	100	0	122	45	13	18	22	1.83
280519--280558	11	3.9	11	81	18	50	0	20	0	80	0.72
280518--280576	19	3.2	18	86	9	84	0	18	1	79	0.81
280848--280878	13	2.4	13	100	0	62	16	0	41	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285077--285144	8	8.9	8	78	15	81	0	14	1	83	0.71
285081--285144	14	4.4	14	79	16	76	0	14	1	84	0.70
285077--285144	22	3.0	22	89	8	102	0	14	1	83	0.71
285077--285144	30	2.2	31	89	7	104	0	14	1	83	0.71
287049--287092	21	2.0	21	87	12	63	61	0	22	15	1.34
287768--287809	15	2.7	15	92	3	66	23	26	21	28	1.99
289366--289405	19	2.0	20	90	4	64	65	0	15	20	1.28
293637--293670	13	2.5	13	90	4	50	2	14	2	79	0.97
295434--295490	27	2.2	26	84	9	71	24	14	0	61	1.33
295719--295785	11	5.7	11	76	20	57	77	1	17	2	0.97
299450--299576	42	3.0	42	100	0	254	35	14	9	40	1.79
299811--299867	27	2.2	26	84	9	71	24	15	0	59	1.36
306050--306092	20	2.2	20	87	4	61	34	9	6	48	1.62
306669--306706	15	2.4	16	82	4	51	15	26	0	57	1.38
311574--311600	14	1.9	14	100	0	54	22	40	0	37	1.54
312006--312041	13	2.8	13	91	4	56	80	0	19	0	0.71
333818--333854	2	19.0	2	88	5	58	48	2	0	48	1.15
337659--337712	16	3.3	16	92	2	81	29	18	16	35	1.93
343802--343841	19	2.0	20	85	4	55	62	0	15	22	1.32
357975--358019	21	2.1	21	87	0	63	0	8	13	77	0.98
364273--364327	25	2.2	26	87	9	78	10	10	18	60	1.59
366834--366871	19	2.1	18	85	14	51	63	0	10	26	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366834--366871	18	2.1	19	85	14	53	63	0	10	26	1.27

Tables:   1

The End!