Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007746.1 Hibiscus syriacus cultivar Beakdansim tig00110009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3674400
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 14 of 15
Found at i:3341364 original size:303 final size:304
Alignment explanation
Indices: 3340760--3342839 Score: 3967
Period size: 303 Copynumber: 6.9 Consensus size: 304
3340750 GATGGAAATG
* * *
3340760 TTTGAAAACATCATGCACTGAAGGGCTTACAGATGACCCTAAGGCTTTGAAAACATC-AAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
*
3340824 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
3340889 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
*
3340954 GCTTTGAAAACATC-AAAAGCTCCCGAAGGCTTTTTTGAAACATCATGCACTGAAGGACTTACAG
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
*
3341018 ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
261 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
3341062 TTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
3341127 CCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
3341191 ATCAAAAAGCTCCCGAAGGCTTTTTGGAACCATCATGCACTGAAGGACTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
*
3341256 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTTGAAACATCATGCACTGAAGGACTTACAG
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
*
3341321 ATAACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
261 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
3341365 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
3341430 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
3341495 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
* *
3341560 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCGTTTTGGAAACATCATGCACTGAAGGACTTATAG
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
*
3341625 ATGACCCGAAGGATTTGAAAACATCAAAAAGCTCCCGAAGGCTT
261 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
*
3341669 TTTTGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATC-AAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
3341733 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
3341798 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
*
3341863 GATTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
3341928 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-T
261 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
3341971 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
3342036 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
3342101 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
3342166 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
3342231 ATGACCCGAAGGCTTTGAAAACATC-AAAAGCTCCCGAAGGCTT
261 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
3342274 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
3342339 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
3342404 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
3342469 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
3342534 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
261 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
3342578 TTTGGAAACATCATGCACTGAAGGACTTACAGATGA-CCGAAGGCTTTGAAAACATCAAAAAGCT
1 TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
3342642 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
66 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
3342707 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
131 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
*
3342772 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACAGAAGGACTTACAG
196 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
3342837 ATG
261 ATG
3342840 TGGGAAATAG
Statistics
Matches: 1751, Mismatches: 21, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
302 260 0.15
303 1158 0.66
304 333 0.19
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (304 bp):
TTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTT
Found at i:3343531 original size:22 final size:22
Alignment explanation
Indices: 3343503--3343557 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
3343493 CATAAAGTTT
*
3343503 TCATCTTTGGAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
3343525 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
3343547 TCATCTTTGAA
1 TCATCTTTGAA
3343558 GAGTATAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:3343994 original size:54 final size:54
Alignment explanation
Indices: 3343912--3344023 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 54
3343902 CGAATAGCAG
*** * *
3343912 GTTCGTAAAACATTTAACAGTGCATTCATCCTTTCCTGTGGTTTCTGCTCAGAT
1 GTTCGTAAAACATTTAACAACACATTCATACTTTCCTGTGGCTTCTGCTCAGAT
* ** *
3343966 GTTCGTAAAACATTTGACAACACATTCATACTTTTTTTTGGCTTCTGCTCAGAT
1 GTTCGTAAAACATTTAACAACACATTCATACTTTCCTGTGGCTTCTGCTCAGAT
3344020 GTTC
1 GTTC
3344024 TCAATCATTG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.40
Consensus pattern (54 bp):
GTTCGTAAAACATTTAACAACACATTCATACTTTCCTGTGGCTTCTGCTCAGAT
Found at i:3346379 original size:93 final size:91
Alignment explanation
Indices: 3346217--3346489 Score: 382
Period size: 93 Copynumber: 3.0 Consensus size: 91
3346207 CTTATTTCTA
* * * * * *
3346217 CTATGAGCAAAATTCATCTTTCAAATCCAATGATTGATTTTGGAGTTCATACCAAATCAGATCAA
1 CTATGAGC-ACATTCATCTTCCAAATTCAATGATTGATTTTGG-TTTCATACCAAACCAGATCAG
3346282 ATAACTCAAAGAACACTTCCAGAAGATG
64 ATAACTCAAAGAACACTTCCAGAAGATG
*
3346310 CTATGTGCACATTCATCTTCCAAATTCAATGATTGATTCTGTGGTTTCATACCAAACCAGATCAG
1 CTATGAGCACATTCATCTTCCAAATTCAATGATTGATT-T-TGGTTTCATACCAAACCAGATCAG
*
3346375 ATAACTCAAAGAACACTTCCAAAAGATG
64 ATAACTCAAAGAACACTTCCAGAAGATG
3346403 CTATGAGCACATTCATCTTCCAAATTC-A--A-TGA--TTGGTTT--TACCAAACCAGATCAGAT
1 CTATGAGCACATTCATCTTCCAAATTCAATGATTGATTTTGGTTTCATACCAAACCAGATCAGAT
3346460 AACTCAAAGAACACTTCCAGAAGATG
66 AACTCAAAGAACACTTCCAGAAGATG
3346486 CTAT
1 CTAT
3346490 AAGTATATTG
Statistics
Matches: 168, Mismatches: 10, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
83 47 0.28
85 6 0.04
86 1 0.01
89 3 0.02
90 1 0.01
92 28 0.17
93 79 0.47
94 3 0.02
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (91 bp):
CTATGAGCACATTCATCTTCCAAATTCAATGATTGATTTTGGTTTCATACCAAACCAGATCAGAT
AACTCAAAGAACACTTCCAGAAGATG
Found at i:3355345 original size:3 final size:3
Alignment explanation
Indices: 3355339--3355383 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
3355329 ATTTTTTATT
* *
3355339 TAA TAA TAA TAA TAA TAC TAA TAT TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3355384 AACAAAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:3358085 original size:18 final size:18
Alignment explanation
Indices: 3358062--3358099 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
3358052 TTTAGAGGGG
3358062 GTTTGGAGTGATTTTAGT
1 GTTTGGAGTGATTTTAGT
3358080 GTTTGGAGTGATTTTAGT
1 GTTTGGAGTGATTTTAGT
3358098 GT
1 GT
3358100 ATGAAAGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.50
Consensus pattern (18 bp):
GTTTGGAGTGATTTTAGT
Found at i:3359105 original size:4 final size:4
Alignment explanation
Indices: 3359096--3359140 Score: 81
Period size: 4 Copynumber: 11.2 Consensus size: 4
3359086 CATCCCAATT
*
3359096 TGTA TGTA TGTA TGTA TGTA TGTA TATA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
3359141 TATTATTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:3361301 original size:41 final size:42
Alignment explanation
Indices: 3361244--3361349 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
3361234 TTCATTCGGT
* * *
3361244 CTTACGGATGGCCCGAATGACTT-ACCATCT-TGCTCGAAAGA
1 CTTACAGATGACCCGAAGGACTTAACCAT-TGTGCTCGAAAGA
* *
3361285 CTTACAGATGACCCGAAGGATTTAATCATTGTGCTCGAAAGA
1 CTTACAGATGACCCGAAGGACTTAACCATTGTGCTCGAAAGA
* * *
3361327 CTTACTGATGGCCTGAAGGACTT
1 CTTACAGATGACCCGAAGGACTT
3361350 GCCAATTTGG
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
41 20 0.37
42 34 0.63
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (42 bp):
CTTACAGATGACCCGAAGGACTTAACCATTGTGCTCGAAAGA
Found at i:3361514 original size:20 final size:20
Alignment explanation
Indices: 3361482--3361551 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
3361472 AAACATCCTA
*
3361482 CCCGAA-GATCTTACGGATGG
1 CCCGAAGGA-CTTACAGATGG
* *
3361502 CCCGAAGGACTTATCATATTG
1 CCCGAAGGACTTA-CAGATGG
* * *
3361523 CTCGAAAGACTTACAGATGA
1 CCCGAAGGACTTACAGATGG
3361543 CCCGAAGGA
1 CCCGAAGGA
3361552 TTTAATCATC
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
20 21 0.55
21 17 0.45
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.20
Consensus pattern (20 bp):
CCCGAAGGACTTACAGATGG
Found at i:3361548 original size:41 final size:42
Alignment explanation
Indices: 3361486--3361583 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 42
3361476 ATCCTACCCG
* *
3361486 AAGATCTTACGGATGGCCCGAAGGACTT-ATCAT-ATTGCTCGA
1 AAGA-CTTACAGATGACCCGAAGGACTTAATCATCA-TGCTCGA
*
3361528 AAGACTTACAGATGACCCGAAGGATTTAATCATCATGCTCGA
1 AAGACTTACAGATGACCCGAAGGACTTAATCATCATGCTCGA
*
3361570 AAGACTTACTGATG
1 AAGACTTACAGATG
3361584 GCCAAAAGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 20 0.40
42 29 0.58
43 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (42 bp):
AAGACTTACAGATGACCCGAAGGACTTAATCATCATGCTCGA
Found at i:3361824 original size:258 final size:258
Alignment explanation
Indices: 3361470--3362231 Score: 1231
Period size: 258 Copynumber: 3.0 Consensus size: 258
3361460 CTCATTTTAT
* * * *
3361470 GAAAACATCCTACCCGAAGATCTTACGGATGGCCCGAAGGACTTATCATATTGCTCGAAAGACTT
1 GAAAACGTCCTACCCGAAGGTCTTACGGATGGCCCGAAGAACTTATCATCTTGCTCGAAAGACTT
* *
3361535 ACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCAAAAGAACTTACC
66 ACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCAGAAGGACTTACC
* * * *
3361600 AATTTGGGAAATAATTTACTCGGTACGAAACTTTGGTAATCACTTTCTTACTTTTCAAAAAATTC
131 AATTTGGGAAATAGTTTACTGGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAAAATTC
* * * *
3361665 ATTTTCAAAAGAGATTTAAATAAAAAATTTTGGTAATCTCTTTCTCATTTTCACAACTCATGA
196 ATTTTCAAAAGAGATTTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCACAACTCATGA
3361728 GAAAACGTCCTACCCGAAGGTCTTACGGATGGCCCGAAGAACTTATCATCTTGCTCGAAAGACTT
1 GAAAACGTCCTACCCGAAGGTCTTACGGATGGCCCGAAGAACTTATCATCTTGCTCGAAAGACTT
* *
3361793 ACAGATGACCCGAAGGATTTAATCATCATGCTTGAAAGACTTACTGATGGCCCGAAGGACTTACC
66 ACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCAGAAGGACTTACC
* * *
3361858 AATTTGGGAAATAGTTTAATGGGTAAGAATCTTTGGTAATCGCTTTCTTACTTTTCAAAAATTTC
131 AATTTGGGAAATAGTTTACTGGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAAAATTC
*
3361923 ATTTTCAAAAGAGATTTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCACAACTCATGT
196 ATTTTCAAAAGAGATTTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCACAACTCATGA
*
3361986 GAAAACGTCCTACACGAAGGTCTTACGGATGGCCCGAATGAA-TTATCATCTTGCTCGAAAGACT
1 GAAAACGTCCTACCCGAAGGTCTTACGGATGGCCCGAA-GAACTTATCATCTTGCTCGAAAGACT
* *
3362050 TACAGATGACCCGGAA-TATTTAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGACTTA
65 TACAGATGACCC-GAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCAGAAGGACTTA
* * * *
3362114 CTAATTTGGGAAATAGTTTACTGGGTAATAAACTTTGGTAATCGCTTTGTTACTTTTTAAAAAAT
129 CCAATTTGGGAAATAGTTTACTGGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAAAAT
* *
3362179 TCATTTTCAAAAGATATTTAAATGAGAAACATTGGTAATCGCTTTCTCATTTT
194 TCATTTTCAAAAGAGATTTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTT
3362232 TAAAATAACT
Statistics
Matches: 469, Mismatches: 33, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
258 463 0.99
259 6 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (258 bp):
GAAAACGTCCTACCCGAAGGTCTTACGGATGGCCCGAAGAACTTATCATCTTGCTCGAAAGACTT
ACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCAGAAGGACTTACC
AATTTGGGAAATAGTTTACTGGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAAAATTC
ATTTTCAAAAGAGATTTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCACAACTCATGA
Found at i:3361831 original size:42 final size:41
Alignment explanation
Indices: 3361749--3361855 Score: 142
Period size: 42 Copynumber: 2.6 Consensus size: 41
3361739 ACCCGAAGGT
* * *
3361749 CTTACGGATGGCCCGAAGAACTTATCATCTTGCTCGAAAGA
1 CTTACAGATGGCCCGAAGGACTTATCATCATGCTCGAAAGA
* * *
3361790 CTTACAGATGACCCGAAGGATTTAATCATCATGCTTGAAAGA
1 CTTACAGATGGCCCGAAGGACTT-ATCATCATGCTCGAAAGA
*
3361832 CTTACTGATGGCCCGAAGGACTTA
1 CTTACAGATGGCCCGAAGGACTTA
3361856 CCAATTTGGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 20 0.36
42 36 0.64
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (41 bp):
CTTACAGATGGCCCGAAGGACTTATCATCATGCTCGAAAGA
Found at i:3362216 original size:516 final size:505
Alignment explanation
Indices: 3361241--3362231 Score: 1520
Period size: 516 Copynumber: 1.9 Consensus size: 505
3361231 GGTTTCATTC
3361241 GGTCTTACGGATGGCCCGAATGACTTACCATCTTGCTCGAAAGACTTACAGATGACCCGAAGGAT
1 GGTCTTACGGATGGCCCGAATGACTTACCATCTTGCTCGAAAGACTTACAGATGACCCGAAGGAT
** * *
3361306 TTAATCATTGTGCTCGAAAGACTTACTGATGGCCTGAAGGACTTGCCAATTTGGGAAATAATTTA
66 TTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAATTTGGGAAATAATTTA
* *
3361371 TTGGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTGAAAACATTAA
131 ATGGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTAAAAACATTAA
*
3361436 ATGAGAAACTTTGGTAATCGCTTTCTCATTTTATGAAAACATCCTACCCGAAGATCTTACGGATG
196 ATGAGAAACTTTGGTAATCGCTTTCTCATTTTATGAAAACATCCTACACGAAGATCTTACGGATG
*
3361501 GCCCGAAGGACTTATCATATTGCTCGAAAGACTTACAGATGACCCGAAGGATTTAATCATCATGC
261 GCCCGAAGGAATTATCATATTGCTCGAAAGACTTACAGATGACCCGAAGGATTTAATCATCATGC
*
3361566 TCGAAAGACTTACTGATGGCCAAAAGAACTTACCAATTTGGGAAATAATTTACTCGGTACGAAAC
326 TCGAAAGACTTACTGATGGCCAAAAGAACTTACCAATTTGGGAAATAATTTACTCGGTAAGAAAC
**
3361631 TTTGGTAATCACTTTCTTACTTTTCAAAAAATTCATTTTCAAAAGAGATTTAAATAAAAAATTTT
391 TTTGGTAATCACTTTCTTACTTTTCAAAAAATTCATTTTCAAAAGAGATTTAAATAAAAAACATT
*
3361696 GGTAATCTCTTTCTCATTTTCACAACTCATGAGAAAACGTCCTACCCGAA
456 GGTAATCGCTTTCTCATTTTCACAACTCATGAGAAAACGTCCTACCCGAA
*
3361746 GGTCTTACGGATGGCCCGAA-GAACTTATCATCTTGCTCGAAAGACTTACAGATGACCCGAAGGA
1 GGTCTTACGGATGGCCCGAATG-ACTTACCATCTTGCTCGAAAGACTTACAGATGACCCGAAGGA
* *
3361810 TTTAATCATCATGCTTGAAAGACTTACTGATGGCCCGAAGGACTTACCAATTTGGGAAATAGTTT
65 TTTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAATTTGGGAAATAATTT
* *
3361875 AATGGGTAAGAATCTTTGGTAATCGCTTTCTTACTTTTCAAAAATTTCATTTTC-AAAAGAGATT
130 AATGGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTAAAA-ACA-T
*
3361939 TAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTCACAACTCATGTGAAAACGTCCTACACGAA
193 TAAATGAGAAACTTTGGTAATCGCTTTCTCA-TTT------T-A--TGAAAACATCCTACACGAA
* * * *
3362004 GGTCTTACGGATGGCCCGAATGAATTATCATCTTGCTCGAAAGACTTACAGATGACCCGGAA-TA
248 GATCTTACGGATGGCCCGAAGGAATTATCATATTGCTCGAAAGACTTACAGATGACCC-GAAGGA
** * * *
3362068 TTTAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGACTTACTAATTTGGGAAATAGTTT
312 TTTAATCATCATGCTCGAAAGACTTACTGATGGCCAAAAGAACTTACCAATTTGGGAAATAATTT
* * * * * *
3362133 ACTGGGTAATAAACTTTGGTAATCGCTTTGTTACTTTTTAAAAAATTCATTTTCAAAAGATATTT
377 ACTCGGTAAGAAACTTTGGTAATCACTTTCTTACTTTTCAAAAAATTCATTTTCAAAAGAGATTT
* *
3362198 AAATGAGAAACATTGGTAATCGCTTTCTCATTTT
442 AAATAAAAAACATTGGTAATCGCTTTCTCATTTT
3362232 TAAAATAACT
Statistics
Matches: 437, Mismatches: 35, Indels: 17
0.89 0.07 0.03
Matches are distributed among these distances:
504 4 0.01
505 174 0.40
506 32 0.07
507 3 0.01
513 1 0.00
514 1 0.00
516 219 0.50
517 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (505 bp):
GGTCTTACGGATGGCCCGAATGACTTACCATCTTGCTCGAAAGACTTACAGATGACCCGAAGGAT
TTAATCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACCAATTTGGGAAATAATTTA
ATGGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAAATTTCATTTTCTAAAAACATTAA
ATGAGAAACTTTGGTAATCGCTTTCTCATTTTATGAAAACATCCTACACGAAGATCTTACGGATG
GCCCGAAGGAATTATCATATTGCTCGAAAGACTTACAGATGACCCGAAGGATTTAATCATCATGC
TCGAAAGACTTACTGATGGCCAAAAGAACTTACCAATTTGGGAAATAATTTACTCGGTAAGAAAC
TTTGGTAATCACTTTCTTACTTTTCAAAAAATTCATTTTCAAAAGAGATTTAAATAAAAAACATT
GGTAATCGCTTTCTCATTTTCACAACTCATGAGAAAACGTCCTACCCGAA
Found at i:3364554 original size:3 final size:3
Alignment explanation
Indices: 3364546--3364586 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
3364536 TGAGTGTATT
3364546 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
3364587 CATACATACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:3364593 original size:4 final size:4
Alignment explanation
Indices: 3364584--3370321 Score: 10603
Period size: 4 Copynumber: 1452.8 Consensus size: 4
3364574 AATAATAATA
3364584 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3364632 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3364680 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3364728 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3364774 ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3364821 ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3364868 ATAC ATAC ATAC ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3364915 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3364963 ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3365010 ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3365058 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3365103 ATAC -TAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365150 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
3365197 CTAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC CTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365244 ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3365290 ATAC ATAC ATAC AT-- ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365336 --AC ATAC ATAC ATAC ATACC ATAC ATAC ACTAC ATAC A-AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATA-C ATAC ATAC A-TAC ATAC ATAC ATAC ATAC
* *
3365383 ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC CTAC ATAC ATA- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3365430 ATAC -TAC ATAC ATAC -TAC ATAC CTAC ATAC AT-C ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365475 ATAC ATACC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
3365522 ATAC CTAC -TAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC CTAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365569 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365617 ACCTAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 A--TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365665 ATAC ATAC ATACC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3365714 ATAC CTAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365760 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365806 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365854 ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3365900 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3365947 ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
3365993 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AATAC ATAC ACAT ACAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC
*
3366042 ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3366090 ATAC ATAC ATAC ATAC ATAC ATCC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366137 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366185 ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366232 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366280 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366326 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366373 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366419 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
3366467 ATAC -TAC ATAC ATAT ACAT ATAC ATAC ATAC AT-C ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3366513 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AGAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366561 AT-C ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366607 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366655 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366702 ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366749 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366797 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366843 ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366889 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366935 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3366980 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367027 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367075 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367123 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367171 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367219 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367267 ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367313 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367359 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367407 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3367455 CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367503 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367551 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367599 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367645 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367693 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367741 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367788 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367836 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367884 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367932 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3367979 ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368025 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368073 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368121 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368169 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368217 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368265 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368313 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368361 ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368408 ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368455 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368503 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368551 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368599 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368647 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368695 ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368740 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368788 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368835 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368883 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368931 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3368979 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369027 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369075 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369123 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369171 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369219 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369267 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369313 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369361 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369409 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369457 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369505 ATAC ATAC ATAC ATAC ATACC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369554 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369602 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369650 ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369696 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369744 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369792 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369840 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369888 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369936 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3369984 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3370032 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3370080 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3370128 ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3370175 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3370223 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3370271 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3370319 ATA
1 ATA
3370322 AAAATTAAGA
Statistics
Matches: 5601, Mismatches: 44, Indels: 178
0.96 0.01 0.03
Matches are distributed among these distances:
2 46 0.01
3 103 0.02
4 5425 0.97
5 24 0.00
6 3 0.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:3370844 original size:17 final size:18
Alignment explanation
Indices: 3370819--3370852 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
3370809 GCTTTCTTAC
3370819 TTTTCAAAA-ATTAAATT
1 TTTTCAAAACATTAAATT
*
3370836 TTTTGAAAACATTAAAT
1 TTTTCAAAACATTAAAT
3370853 GAGAAACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (18 bp):
TTTTCAAAACATTAAATT
Found at i:3370922 original size:20 final size:20
Alignment explanation
Indices: 3370896--3370945 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
3370886 AAAACATCCT
* *
3370896 ACCCGAAGGTCTTACGGATG
1 ACCCGAAGGACTTACAGATG
*
3370916 GCCCGAAGGACTTACAGATG
1 ACCCGAAGGACTTACAGATG
3370936 ACCCGAAGGA
1 ACCCGAAGGA
3370946 TTTAATCATC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.30, T:0.14
Consensus pattern (20 bp):
ACCCGAAGGACTTACAGATG
Found at i:3371135 original size:225 final size:226
Alignment explanation
Indices: 3370698--3371154 Score: 772
Period size: 225 Copynumber: 2.0 Consensus size: 226
3370688 TTGCTTGAAA
* *
3370698 GACTTACAGATGACCCGAAGGATATAATTATCATGCTCGAAAGACTTACTGATGGCCCGAAGGAC
1 GACTTACAGATGACCCGAAGGATATAATCATCATGCTCGAAAGACTTACTGATGGCACGAAGGAC
*
3370763 TTACCAATTTGGGAAATAATTTACTAGGTAAGAAACTTTGGTAATCGCTTTCTTACTTTTCAAAA
66 TTACCAATTTGGGAAATAATTTACTAGGTAAGAAACTTTAGTAATCGCTTTCTTACTTTTCAAAA
* *
3370828 ATTAAATTTTTTGAAAACATTAAATGAGAAACTTTGGTAATCGCTTTCTCATTTTGTGAAAACAT
131 ATTAAATTTTCTGAAAACATTAAACGAGAAACTTTGGTAATCGCTTTCTCATTTTGTGAAAACAT
*
3370893 CCTACCCGAAGGTCTTACGGATGGCCCGAAG
196 CCTACCCGAAGGTCTTACGGATGGCCCAAAG
* * *
3370924 GACTTACAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCATGAATGAC
1 GACTTACAGATGACCCGAAGGATATAATCATCATGCTCGAAAGACTTACTGATGGCACGAAGGAC
* *
3370989 TTACCAATTTGGGAAATAATTTACTAGGTAAGAAAC-TTAGTATTCTCTTTCTTACTTTTCAAAA
66 TTACCAATTTGGGAAATAATTTACTAGGTAAGAAACTTTAGTAATCGCTTTCTTACTTTTCAAAA
** *
3371053 ATTTCATTTTCTGAAAACATTAAACGAGAAACTTTGGTAATCGCTTTCTCTTTTTGTGAAAACAT
131 ATTAAATTTTCTGAAAACATTAAACGAGAAACTTTGGTAATCGCTTTCTCATTTTGTGAAAACAT
*
3371118 CCTACCCGAAGGTCTTACGGATGGCCTAAAG
196 CCTACCCGAAGGTCTTACGGATGGCCCAAAG
3371149 GACTTA
1 GACTTA
3371155 TCATCTTGCT
Statistics
Matches: 216, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
225 120 0.56
226 96 0.44
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (226 bp):
GACTTACAGATGACCCGAAGGATATAATCATCATGCTCGAAAGACTTACTGATGGCACGAAGGAC
TTACCAATTTGGGAAATAATTTACTAGGTAAGAAACTTTAGTAATCGCTTTCTTACTTTTCAAAA
ATTAAATTTTCTGAAAACATTAAACGAGAAACTTTGGTAATCGCTTTCTCATTTTGTGAAAACAT
CCTACCCGAAGGTCTTACGGATGGCCCAAAG
Found at i:3371188 original size:20 final size:19
Alignment explanation
Indices: 3371161--3371237 Score: 57
Period size: 20 Copynumber: 3.8 Consensus size: 19
3371151 CTTATCATCT
3371161 TGCTCGAAAGACTTATAGA
1 TGCTCGAAAGACTTATAGA
* * *
3371180 TGACTCGAATGATTTAATCATCA
1 TG-CTCGAAAGACTT-AT-A-GA
3371203 TGCTCGAAAGACTTACT-GA
1 TGCTCGAAAGACTTA-TAGA
*
3371222 TGGCTCGAAGGACTTA
1 T-GCTCGAAAGACTTA
3371238 CTAATTTGGG
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
19 4 0.09
20 23 0.51
21 3 0.07
22 12 0.27
23 3 0.07
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (19 bp):
TGCTCGAAAGACTTATAGA
Found at i:3376796 original size:117 final size:117
Alignment explanation
Indices: 3376542--3377049 Score: 675
Period size: 117 Copynumber: 4.4 Consensus size: 117
3376532 TTGATCGGGC
* ** * ** *
3376542 GAGTTCTTCTCATTATGAACTCTTTC-CTGGGGATATCAATCCACTTCATTCTGTGATGGAATC-
1 GAGTTCTTCTCATTATGAACTC-TCCACTGGAAATGTTGATCCACCTCATTCTGTGATGGAATCG
* *
3376605 -ACTAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTTCCCACGTCGGAT
65 AACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTC-TTTTCCCTCGTCGGAT
* * *
3376658 GAGTTCTTCTCATTATGAACTCTCCACTGGAAATCTTGATCCACCTCCTTCTGTGATGGAATCAA
1 GAGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCATTCTGTGATGGAATCGA
* * * *
3376723 ACCAAGGTTAAACAAGTTCTTCTCTTTATTAACTTCTTTTCCCTCGTTGGAT
66 ACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTCCCTCGTCGGAT
*
3376775 GAGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCATTCTTTGATGGAATCGA
1 GAGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCATTCTGTGATGGAATCGA
* * * * * *
3376840 ACTAATGTTTAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTGTTGGAT
66 ACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTCCCTCGTCGGAT
* * *
3376892 GAGTTATTCTCATTATGAACTCTCCACTAGAAATGTTGATCCACCTCCTTCTGTGATGG-ATCGA
1 GAGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCATTCTGTGATGGAATCGA
* *
3376956 ACCAAGGTTGAACAAGTTCTTATCATTAAGAACTTCTTCTT-CCTCTGTCGGAT
66 ACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT-TTCCCTC-GTCGGAT
* *
3377009 GAGTTCTTCTCATTTTGAACTCTCCATTGGAAATGTTGATC
1 GAGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGATC
3377050 GATTTTTCTT
Statistics
Matches: 346, Mismatches: 41, Indels: 9
0.87 0.10 0.02
Matches are distributed among these distances:
115 2 0.01
116 93 0.27
117 219 0.63
118 32 0.09
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (117 bp):
GAGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGATCCACCTCATTCTGTGATGGAATCGA
ACCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTCCCTCGTCGGAT
Found at i:3377442 original size:74 final size:74
Alignment explanation
Indices: 3377326--3377639 Score: 361
Period size: 73 Copynumber: 4.3 Consensus size: 74
3377316 AGATAAGCTC
* *
3377326 TCTCGAGTGAGATAAATTTTGTTTCGAGGGAAAACT-GTCTCAAGCGAGACGAAGTTGGTTTTAA
1 TCTCGAGTGAGATAAATTTTGTTTCAAGGGAAAACTAGTCTCAAGCAAGACGAAGTTGGTTTTAA
3377390 GAAAAACCA
66 GAAAAACCA
* * * *
3377399 TATCGAGTTAGATAAAATTTTATTTCTAGGGAAAA-TAGTCTCAAGCAAGACGAAGTTGGTTTTA
1 TCTCGAGTGAGAT-AAATTTTGTTTCAAGGGAAAACTAGTCTCAAGCAAGACGAAGTTGGTTTTA
3377463 AGAAAAACCA
65 AGAAAAACCA
** * * *
3377473 TCTTAAGTGAGATACATTTTGTTTCAAGGGAAAATTA-TCTCAAGCAATACGAAGTTGGTTTTAA
1 TCTCGAGTGAGATAAATTTTGTTTCAAGGGAAAACTAGTCTCAAGCAAGACGAAGTTGGTTTTAA
*
3377537 GAAAAATCA
66 GAAAAACCA
* ** * *
3377546 TCTCGAGTGAGATAAAATTTCTTGTTTCAAGGG-AAACT-GTCTCCAGTGAGATGAAACTT-GTT
1 TCTCGAGTGAGAT-AAA-TT-TTGTTTCAAGGGAAAACTAGTCTCAAGCAAGACG-AAGTTGGTT
* *
3377608 TTGAGAAAAACAA
62 TTAAGAAAAACCA
*
3377621 TCTCAAGTGAGATAAATTT
1 TCTCGAGTGAGATAAATTT
3377640 ATGATCTTTT
Statistics
Matches: 205, Mismatches: 28, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
72 1 0.00
73 77 0.38
74 71 0.35
75 40 0.20
76 16 0.08
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (74 bp):
TCTCGAGTGAGATAAATTTTGTTTCAAGGGAAAACTAGTCTCAAGCAAGACGAAGTTGGTTTTAA
GAAAAACCA
Found at i:3377543 original size:36 final size:36
Alignment explanation
Indices: 3377437--3377549 Score: 104
Period size: 36 Copynumber: 3.1 Consensus size: 36
3377427 GGGAAAATAG
* *
3377437 TCTCAAGCAAGACGAAGTTGGTTTTAAGAAAAACCA
1 TCTCAAGCAATACGAAGTTGGTTTTAAGAAAAATCA
* * * * * * *
3377473 TCTTAAGTGAGATAC--ATTTTGTTTCAAGGGAAAATTA
1 TCTCAAG-CA-ATACGAAGTTGGTTTTAA-GAAAAATCA
3377510 TCTCAAGCAATACGAAGTTGGTTTTAAGAAAAATCA
1 TCTCAAGCAATACGAAGTTGGTTTTAAGAAAAATCA
3377546 TCTC
1 TCTC
3377550 GAGTGAGATA
Statistics
Matches: 56, Mismatches: 16, Indels: 10
0.68 0.20 0.12
Matches are distributed among these distances:
35 4 0.07
36 27 0.48
37 22 0.39
38 3 0.05
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (36 bp):
TCTCAAGCAATACGAAGTTGGTTTTAAGAAAAATCA
Found at i:3379083 original size:14 final size:14
Alignment explanation
Indices: 3379064--3379165 Score: 86
Period size: 14 Copynumber: 7.3 Consensus size: 14
3379054 TTTTCTTTTT
3379064 TTTTCTCTTTTCTC
1 TTTTCTCTTTTCTC
*
3379078 TTTTCTCTTTTTTC
1 TTTTCTCTTTTCTC
*
3379092 TTTTTTTACTTTTCT-
1 -TTTTCT-CTTTTCTC
*
3379107 TTTTCTCTCTTCT-
1 TTTTCTCTTTTCTC
*
3379120 TTTTCCTTTTTTCTC
1 TTTT-CTCTTTTCTC
3379135 TTTTTCTCTTTT-TC
1 -TTTTCTCTTTTCTC
* *
3379149 -TTTCTTTTTTCTA
1 TTTTCTCTTTTCTC
3379162 TTTT
1 TTTT
3379166 TTTATGTCTT
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
12 9 0.13
13 11 0.15
14 30 0.42
15 11 0.15
16 10 0.14
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTCTCTTTTCTC
Found at i:3379129 original size:41 final size:41
Alignment explanation
Indices: 3379054--3379153 Score: 132
Period size: 41 Copynumber: 2.4 Consensus size: 41
3379044 AATCTGTTTA
* *
3379054 TTTTCTTTTTTTTTCTCTTTTCTCTTTTCTCTTTTTTCTTT
1 TTTTCTTTTTTTTTCTCTCTTCTCTTTTCTCTTTTTTCTCT
3379095 TTTTACTTTTCTTTTTCTCTCTTCT-TTTTC-CTTTTTTCTCT
1 TTTT-CTTTT-TTTTTCTCTCTTCTCTTTTCTCTTTTTTCTCT
3379136 TTTTCTCTTTTTCTTTCT
1 TTTTCT-TTTTT-TTTCT
3379154 TTTTTCTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
40 4 0.08
41 26 0.49
42 10 0.19
43 13 0.25
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (41 bp):
TTTTCTTTTTTTTTCTCTCTTCTCTTTTCTCTTTTTTCTCT
Found at i:3379131 original size:27 final size:27
Alignment explanation
Indices: 3379078--3379166 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 27
3379068 CTCTTTTCTC
* *
3379078 TTTTCTCTTTTT-TCTTTTT-TTAC--
1 TTTTCTATTTTTCTCTTTTTCTTCCTT
3379101 TTTTCT-TTTTCTCTCTTCTTT-TTCCTT
1 TTTTCTATTTT-TCTCTT-TTTCTTCCTT
* *
3379128 TTTTCTCTTTTTCTCTTTTTCTTTCTT
1 TTTTCTATTTTTCTCTTTTTCTTCCTT
3379155 TTTTCTATTTTT
1 TTTTCTATTTTT
3379167 TTATGTCTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
22 4 0.07
23 7 0.12
24 4 0.07
25 6 0.11
26 3 0.05
27 28 0.50
28 4 0.07
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (27 bp):
TTTTCTATTTTTCTCTTTTTCTTCCTT
Found at i:3379137 original size:43 final size:41
Alignment explanation
Indices: 3379054--3379153 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 41
3379044 AATCTGTTTA
*
3379054 TTTTCTTTTTTTTTCTCTTTTCTCTTTTCTCTTTTTTCTTT
1 TTTTCTTTTTTTTTCTCTCTTCTCTTTTCTCTTTTTTCTTT
3379095 TTTTACTTTTCTTTTTCTCTCTTCT-TTTTC-CTTTTTTCTCTT
1 TTTT-CTTTT-TTTTTCTCTCTTCTCTTTTCTCTTTTTTCT-TT
*
3379137 TTTCTCTTTTTCTTTCT
1 TTT-TCTTTTTTTTTCT
3379154 TTTTTCTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
41 19 0.36
42 20 0.38
43 14 0.26
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (41 bp):
TTTTCTTTTTTTTTCTCTCTTCTCTTTTCTCTTTTTTCTTT
Found at i:3379160 original size:7 final size:7
Alignment explanation
Indices: 3379054--3379151 Score: 78
Period size: 7 Copynumber: 14.1 Consensus size: 7
3379044 AATCTGTTTA
3379054 TTTTC-T
1 TTTTCTT
3379060 TTTT-TT
1 TTTTCTT
*
3379066 TTCTCTT
1 TTTTCTT
*
3379073 TTCTCTT
1 TTTTCTT
*
3379080 TTCTCTT
1 TTTTCTT
3379087 TTTTCTT
1 TTTTCTT
*
3379094 TTTT-TAC
1 TTTTCT-T
3379101 TTTTC-T
1 TTTTCTT
*
3379107 TTTTCTC
1 TTTTCTT
*
3379114 TCTTCTT
1 TTTTCTT
*
3379121 TTTCCTT
1 TTTTCTT
3379128 TTTTCTCT
1 TTTTCT-T
3379136 TTTTCTCT
1 TTTTCT-T
3379144 TTTTCTT
1 TTTTCTT
3379151 T
1 T
3379152 CTTTTTTCTA
Statistics
Matches: 76, Mismatches: 10, Indels: 11
0.78 0.10 0.11
Matches are distributed among these distances:
6 14 0.18
7 47 0.62
8 15 0.20
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTCTT
Found at i:3379168 original size:11 final size:11
Alignment explanation
Indices: 3379054--3379160 Score: 64
Period size: 11 Copynumber: 9.5 Consensus size: 11
3379044 AATCTGTTTA
*
3379054 TTTTCTTTTTT
1 TTTTCTTTCTT
*
3379065 TTTCTCTTTTCTC
1 TTT-TC-TTTCTT
3379078 TTTTC--TCTT
1 TTTTCTTTCTT
3379087 TTTTC-TT-TT
1 TTTTCTTTCTT
*
3379096 TTTACTTTTCTT
1 TTTTC-TTTCTT
3379108 TTTCTCTCTTCTT
1 TTT-TCT-TTCTT
*
3379121 TTTCCTTT-TT
1 TTTTCTTTCTT
3379131 TCTCTT-TTTCTCT
1 T-T-TTCTTTCT-T
3379144 TTTTCTTTCTT
1 TTTTCTTTCTT
3379155 TTTTCT
1 TTTTCT
3379161 ATTTTTTTAT
Statistics
Matches: 76, Mismatches: 7, Indels: 26
0.70 0.06 0.24
Matches are distributed among these distances:
9 14 0.18
10 4 0.05
11 20 0.26
12 20 0.26
13 18 0.24
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTCTTTCTT
Found at i:3383354 original size:21 final size:20
Alignment explanation
Indices: 3383296--3383357 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 20
3383286 TCCAGTGACC
3383296 AAAAT-GCAACAAATAAT-AA
1 AAAATAGCAA-AAATAATGAA
*
3383315 AATAATAGCTAAATTATAATGAA
1 AA-AATAGC-AAA-AATAATGAA
3383338 TAAAATAGCAAAAATAATGA
1 -AAAATAGCAAAAATAATGA
3383358 CCAAATCGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
19 2 0.06
20 3 0.09
21 10 0.29
22 10 0.29
23 8 0.23
24 2 0.06
ACGTcount: A:0.63, C:0.06, G:0.08, T:0.23
Consensus pattern (20 bp):
AAAATAGCAAAAATAATGAA
Found at i:3389581 original size:21 final size:21
Alignment explanation
Indices: 3389557--3389596 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
3389547 ATCAAAAGGA
*
3389557 TAAGTCCTTTAATTGAAAGAT
1 TAAGTCCTTTAATCGAAAGAT
*
3389578 TAAGTCCTTTCATCGAAAG
1 TAAGTCCTTTAATCGAAAG
3389597 GTCTTAACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (21 bp):
TAAGTCCTTTAATCGAAAGAT
Found at i:3390513 original size:145 final size:146
Alignment explanation
Indices: 3390097--3390534 Score: 406
Period size: 144 Copynumber: 3.0 Consensus size: 146
3390087 AACAAAATCA
* * * * * * * *
3390097 TAACTATTCACGTCCTTATGGTTTTAGTGAAACA-CGATCTCATAACAGAAGTAGTTTTATATTG
1 TAACTATTCACTTCTTTATGATTTCAGTGAAATATC-ACCTCATATCAAAAGTAGTTTTATATTG
* * * * * * * *
3390161 ACACATAACATTTATATAATTATAGGTGTTCTGAAAAAAATTCAAATCTAGGAAAATAATAATTT
65 ACACATAACAGTCATGTAATTATAGGTGATCTAAAAAAAATTCAAATCCATGACAATAATAATTT
* * *
3390226 CAATGGACAGAGAATCT
130 CAATGGACAAAAAATAT
* * * * * * *
3390243 TAATTATTCA-TGTCTTTCT-CTTTCAGTGATATATCACCTCAAATTATAAA-TAATTTTTATAT
1 TAACTATTCACT-TCTTTATGATTTCAGTGAAATATCACCTCATATCA-AAAGT-AGTTTTATAT
* * * **** *
3390305 T--CACATAGCAGTGATGTAATTATATGT-ACTCTAAAATTTTTTCAAATTCATGACAATAATAA
63 TGACACATAACAGTCATGTAATTATAGGTGA-TCTAAAAAAAATTCAAATCCATGACAATAATAA
3390367 TTTCAATGGA-AAAAAATAT
127 TTTCAATGGACAAAAAATAT
*
3390386 TAACTATTCACTTCTTTATGATTTCAGTGAAATATCACCTCATATCAAAAGTAGCTTTATATTGA
1 TAACTATTCACTTCTTTATGATTTCAGTGAAATATCACCTCATATCAAAAGTAGTTTTATATTGA
* * *
3390451 CACATAATAGTCATGTAATTATAGGTGATCTAAAAAAAATTCAAATCCATTACAATAGTAATTTC
66 CACATAACAGTCATGTAATTATAGGTGATCTAAAAAAAATTCAAATCCATGACAATAATAATTTC
* * *
3390516 AATCGACAAAGAATCT
131 AATGGACAAAAAATAT
3390532 TAA
1 TAA
3390535 TTCTTCACAT
Statistics
Matches: 226, Mismatches: 54, Indels: 24
0.74 0.18 0.08
Matches are distributed among these distances:
143 33 0.15
144 80 0.35
145 75 0.33
146 38 0.17
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (146 bp):
TAACTATTCACTTCTTTATGATTTCAGTGAAATATCACCTCATATCAAAAGTAGTTTTATATTGA
CACATAACAGTCATGTAATTATAGGTGATCTAAAAAAAATTCAAATCCATGACAATAATAATTTC
AATGGACAAAAAATAT
Found at i:3390582 original size:145 final size:143
Alignment explanation
Indices: 3390145--3390582 Score: 402
Period size: 145 Copynumber: 3.0 Consensus size: 143
3390135 CTCATAACAG
* * * * * *
3390145 AAGTAGTTTTATATTGACACATAACATTTATATAATTATAGGTGTTCTGAAAAAAATTCAAATCT
1 AAGTAGTTTTATATTGACACATAACAGTCATGTAATTATAGGTGATCTAAAAAAAATTCAAATCC
* * * * * *
3390210 AGGAAAATAATAATTTCAATGGACAGAGAATCTTAATTATTCATGTCTTTCTCTTTCAGTGATAT
66 ATGACAATAATAATTTCAATGGACAAAGAATCTTAATTATTCA-CT-TTTCGCTTTCAGTGAAAT
3390275 ATCACCTCAAATTATA
129 ATCACCTCAAA-TATA
* * * * ****
3390291 AA-TAATTTTTATATT--CACATAGCAGTGATGTAATTATATGT-ACTCTAAAATTTTTTCAAAT
1 AAGT-AGTTTTATATTGACACATAACAGTCATGTAATTATAGGTGA-TCTAAAAAAAATTCAAAT
* * * * * *
3390352 TCATGACAATAATAATTTCAATGGA-AAAAAATATTAACTATTCACTTCTTTATGATTTCAGTGA
64 CCATGACAATAATAATTTCAATGGACAAAGAATCTTAATTATTCAC-T-TTT-CGCTTTCAGTGA
*
3390416 AATATCACCTCATATCA-A
126 AATATCACCTCAAAT-ATA
* *
3390434 AAGTAGCTTTATATTGACACATAATAGTCATGTAATTATAGGTGATCTAAAAAAAATTCAAATCC
1 AAGTAGTTTTATATTGACACATAACAGTCATGTAATTATAGGTGATCTAAAAAAAATTCAAATCC
* * * * * ***
3390499 ATTACAATAGTAATTTCAATCGACAAAGAATCTTAATTCTTCACATTATTCGCTTTGAGTGACGC
66 ATGACAATAATAATTTCAATGGACAAAGAATCTTAATTATTCAC-TT-TTCGCTTTCAGTGAAAT
3390564 ATCACCTCAAATATA
129 ATCACCTCAAATATA
3390579 AAGT
1 AAGT
3390583 TGCAATGCCA
Statistics
Matches: 228, Mismatches: 52, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
143 33 0.14
144 79 0.35
145 84 0.37
146 32 0.14
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (143 bp):
AAGTAGTTTTATATTGACACATAACAGTCATGTAATTATAGGTGATCTAAAAAAAATTCAAATCC
ATGACAATAATAATTTCAATGGACAAAGAATCTTAATTATTCACTTTTCGCTTTCAGTGAAATAT
CACCTCAAATATA
Found at i:3392462 original size:16 final size:17
Alignment explanation
Indices: 3392424--3392464 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
3392414 GTGTACCTGT
3392424 CCAGCCCAAAATATGAA
1 CCAGCCCAAAATATGAA
* *
3392441 CC-GCCCAAATTCT-AA
1 CCAGCCCAAAATATGAA
3392456 CCAGCCCAA
1 CCAGCCCAA
3392465 CCGAACTGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 4 0.19
16 15 0.71
17 2 0.10
ACGTcount: A:0.39, C:0.39, G:0.10, T:0.12
Consensus pattern (17 bp):
CCAGCCCAAAATATGAA
Found at i:3394938 original size:51 final size:50
Alignment explanation
Indices: 3394870--3394995 Score: 137
Period size: 51 Copynumber: 2.5 Consensus size: 50
3394860 ATATCTCTCA
* *
3394870 AATCACATTCTTTAATTTATTAAAAATAATTTAACTATTCTTC-TCAAATATC
1 AATC-CATTCTTCAATTTATTAAAAAT-ATTTAACTATTCTTCTTC-AACATC
* * *
3394922 AATCCATTCTTCAATTTATTTAAAACTCTTTAACTTTTCTTCTTCAACATC
1 AATCCATTCTTCAATTTA-TTAAAAATATTTAACTATTCTTCTTCAACATC
** *
3394973 AATTAATTCTTCAATTAATTAAA
1 AATCCATTCTTCAATTTATTAAA
3394996 TATTCTTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
50 5 0.08
51 46 0.72
52 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.45
Consensus pattern (50 bp):
AATCCATTCTTCAATTTATTAAAAATATTTAACTATTCTTCTTCAACATC
Found at i:3395645 original size:15 final size:15
Alignment explanation
Indices: 3395627--3395657 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3395617 TTGAACCTTC
*
3395627 TAATGTTGATGTTGA
1 TAATGTTGATATTGA
3395642 TAATGTTGATATTGA
1 TAATGTTGATATTGA
3395657 T
1 T
3395658 CAAACTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (15 bp):
TAATGTTGATATTGA
Found at i:3401520 original size:22 final size:22
Alignment explanation
Indices: 3401455--3401534 Score: 94
Period size: 23 Copynumber: 3.7 Consensus size: 22
3401445 AGAACCCGTG
*
3401455 GGGGGTATCGATTCCCC-T-AA
1 GGGGGAATCGATTCCCCTTCAA
*
3401475 -GGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGATTCCCCTTC-AA
*
3401497 GGGGGAATCGGTTCCCCTTCAA
1 GGGGGAATCGATTCCCCTTCAA
*
3401519 GGGGGTATCGATTCCC
1 GGGGGAATCGATTCCC
3401535 TCTGCCCTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
19 14 0.27
20 1 0.02
22 18 0.35
23 19 0.37
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (22 bp):
GGGGGAATCGATTCCCCTTCAA
Found at i:3409687 original size:21 final size:22
Alignment explanation
Indices: 3409648--3409688 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
3409638 CTAGATCCAA
*
3409648 GCCTAAGACACCTTAAAAAGTT
1 GCCTAAGACACCCTAAAAAGTT
*
3409670 GCCTAAG-CACCCTGAAAAG
1 GCCTAAGACACCCTAAAAAG
3409689 CCCCCTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.27, G:0.17, T:0.17
Consensus pattern (22 bp):
GCCTAAGACACCCTAAAAAGTT
Found at i:3412065 original size:18 final size:19
Alignment explanation
Indices: 3412031--3412066 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
3412021 CACGGAATGT
3412031 AAGATTACCATGGGAATAA
1 AAGATTACCATGGGAATAA
3412050 AAGATTACCA-GGGAATA
1 AAGATTACCATGGGAATA
3412067 GGATTACTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.47, C:0.11, G:0.22, T:0.19
Consensus pattern (19 bp):
AAGATTACCATGGGAATAA
Found at i:3412247 original size:37 final size:37
Alignment explanation
Indices: 3412213--3412282 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
3412203 TACAAATTGT
*
3412213 AAAATATTTATAT-ATTT-TATTTAAAAAATTAAATTC
1 AAAATATTTAAATAATTTGT-TTTAAAAAATTAAATTC
* *
3412249 ATAATATTTAAATAATTTGTTTTACAAAATTAAA
1 AAAATATTTAAATAATTTGTTTTAAAAAATTAAA
3412283 AATATAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 11 0.38
37 17 0.59
38 1 0.03
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (37 bp):
AAAATATTTAAATAATTTGTTTTAAAAAATTAAATTC
Found at i:3415331 original size:20 final size:19
Alignment explanation
Indices: 3415303--3415340 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
3415293 ATTCTAACAT
*
3415303 TTAACAATATAAGAAAATAA
1 TTAAAAATATAA-AAAATAA
3415323 TTAAAAATATAAAAAATA
1 TTAAAAATATAAAAAATA
3415341 TAAACTCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (19 bp):
TTAAAAATATAAAAAATAA
Found at i:3417607 original size:26 final size:26
Alignment explanation
Indices: 3417577--3417627 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
3417567 ATAAATATAA
3417577 TGTAAAAATGCAAATGAAAATGAAAC
1 TGTAAAAATGCAAATGAAAATGAAAC
* **
3417603 TGTAAAGATGCAAATTCAAATGAAA
1 TGTAAAAATGCAAATGAAAATGAAA
3417628 ATGAAATGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.55, C:0.08, G:0.16, T:0.22
Consensus pattern (26 bp):
TGTAAAAATGCAAATGAAAATGAAAC
Found at i:3418865 original size:23 final size:23
Alignment explanation
Indices: 3418839--3418882 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
3418829 AATTCTGTTG
**
3418839 ATTTATTATTTTTTCTTTTCTTT
1 ATTTATTATTTTAACTTTTCTTT
*
3418862 ATTTCTTATTTTAACTTTTCT
1 ATTTATTATTTTAACTTTTCT
3418883 CTCTCCACTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (23 bp):
ATTTATTATTTTAACTTTTCTTT
Found at i:3422866 original size:25 final size:24
Alignment explanation
Indices: 3422815--3422870 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
3422805 ATCAGAAAAC
* *
3422815 AAAATGAAGCACTCAAAAGAAAGA
1 AAAATCAAACACTCAAAAGAAAGA
3422839 AAAATCAAACACTCAAAA-ATAAGA
1 AAAATCAAACACTCAAAAGA-AAGA
3422863 AAAA-CAAA
1 AAAATCAAA
3422871 GAAAAGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.68, C:0.14, G:0.09, T:0.09
Consensus pattern (24 bp):
AAAATCAAACACTCAAAAGAAAGA
Found at i:3434282 original size:20 final size:21
Alignment explanation
Indices: 3434244--3434282 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
3434234 CATCAAGGTC
* *
3434244 TTTGTTGAATCCATGAAATCT
1 TTTGTCGAAACCATGAAATCT
3434265 TTTGTCGAAACCAT-AAAT
1 TTTGTCGAAACCATGAAAT
3434283 TCCTACAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (21 bp):
TTTGTCGAAACCATGAAATCT
Found at i:3440698 original size:18 final size:18
Alignment explanation
Indices: 3440675--3440717 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
3440665 AAATATGTTA
3440675 TTGCCACTACATTTCCAT
1 TTGCCACTACATTTCCAT
3440693 TTGCCACTACATTTCCAT
1 TTGCCACTACATTTCCAT
3440711 TTGCCAC
1 TTGCCAC
3440718 CTCATCAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.21, C:0.35, G:0.07, T:0.37
Consensus pattern (18 bp):
TTGCCACTACATTTCCAT
Found at i:3444131 original size:362 final size:359
Alignment explanation
Indices: 3443469--3444189 Score: 1298
Period size: 362 Copynumber: 2.0 Consensus size: 359
3443459 TGTCGATGAC
* **
3443469 ACTGAAGAATCCCAAGGCATTTCTGAATTGAACTCAGAAATTGAAGAAGAAGTTGAACTGCTTTA
1 ACTGAAGAATCCCAAGGCATTTCTGAATTGAACTCAGAAATTGAAGAAGAAGATGAACAACTTTA
*
3443534 CCAGAACAATTTTATTCAGTTAGCAGAAAAGAACTATTGGATGGATGATGAAGCATAGTAGCATG
66 CCAAAACAATTTTATTCAGTTAGCAGAAAAGAACTATTGGATGGATGATGAAGCATAGTAGCATG
*
3443599 AAACTTTCCAATTTTGGAGGAGCAATCTAGCTTACTACAAGTTAGATCAGGTATGAATTTTGAAC
131 AAACTTTCCAATTTTGGAGGAGCAATATAGCTTACTACAAGTTAGATCAGGTATGAATTTTGAAC
*
3443664 CTTTGAATTTTGATGAATTTATTTCTCCTAAGCCATCATTATTGCATGCACCTACTTTAGAGCTT
196 CTTTGAATTTTGATGAATTTATTCCTCCTAAGCCATCATTATTGCATGCACCTACTTTAGAGCTT
3443729 AAGACTTTGCCAGGGCATCTTAAATATGTTTACTTGGGTAGCGATAAAACTTTACCAGTAATTAT
261 AAGACTTTGCCAGGGCATCTTAAATATGTTTACTTGGGTAGCGATAAAACTTTACCAGTAATTAT
**
3443794 TTCTGCTAACCCTACTGCTAAACAAGAGCAAAGT
326 TTCCACTAACCCTACTGCTAAACAAGAGCAAAGT
*
3443828 ACTGAAGAATCCCAAGGCATTTCTGAATTGAACTCAGTAATTGAAGAAGAAGATGAACAACTTTA
1 ACTGAAGAATCCCAAGGCATTTCTGAATTGAACTCAGAAATTGAAGAAGAAGATGAACAACTTTA
* *
3443893 CCAAAATAATTTTATTCAGTTAGCAGAAACGAACTATTGGATGGATGATGAAAGCATAGTAGAGC
66 CCAAAACAATTTTATTCAGTTAGCAGAAAAGAACTATTGGATGGATGATG-AAGCATAGT--AGC
3443958 ATGAAACTTTCCAATTTTGGAGGAGCAATATAGCTTACTACAAGTTAGATCAGGTATGAATTTTG
128 ATGAAACTTTCCAATTTTGGAGGAGCAATATAGCTTACTACAAGTTAGATCAGGTATGAATTTTG
3444023 AACCTTTGAATTTTGATGAATTTATTCCTCCTAAGCCATCATTATTGCATGCACCTACTTTAGAG
193 AACCTTTGAATTTTGATGAATTTATTCCTCCTAAGCCATCATTATTGCATGCACCTACTTTAGAG
*
3444088 CTTAAGACTTTGCTAGGGCATCTTAAATATGTTTACTTGGGTAGCGATAAAACTTTACCAGTAAT
258 CTTAAGACTTTGCCAGGGCATCTTAAATATGTTTACTTGGGTAGCGATAAAACTTTACCAGTAAT
*
3444153 TATTTCCACTAACCCTGCTGCTAAACAAGAGCAAAGT
323 TATTTCCACTAACCCTACTGCTAAACAAGAGCAAAGT
3444190 TTGTTAAGTG
Statistics
Matches: 346, Mismatches: 13, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
359 108 0.31
360 9 0.03
362 229 0.66
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (359 bp):
ACTGAAGAATCCCAAGGCATTTCTGAATTGAACTCAGAAATTGAAGAAGAAGATGAACAACTTTA
CCAAAACAATTTTATTCAGTTAGCAGAAAAGAACTATTGGATGGATGATGAAGCATAGTAGCATG
AAACTTTCCAATTTTGGAGGAGCAATATAGCTTACTACAAGTTAGATCAGGTATGAATTTTGAAC
CTTTGAATTTTGATGAATTTATTCCTCCTAAGCCATCATTATTGCATGCACCTACTTTAGAGCTT
AAGACTTTGCCAGGGCATCTTAAATATGTTTACTTGGGTAGCGATAAAACTTTACCAGTAATTAT
TTCCACTAACCCTACTGCTAAACAAGAGCAAAGT
Found at i:3447079 original size:23 final size:22
Alignment explanation
Indices: 3447053--3447095 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
3447043 TTCCTTTTTT
*
3447053 TAATTTTTATTTTATTTTGTAGA
1 TAATTTTGA-TTTATTTTGTAGA
*
3447076 TAATTTTGATTTGTTTTGTA
1 TAATTTTGATTTATTTTGTA
3447096 TGGGACCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (22 bp):
TAATTTTGATTTATTTTGTAGA
Found at i:3460899 original size:14 final size:16
Alignment explanation
Indices: 3460865--3460904 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
3460855 CTAATGGGCA
3460865 AAGTTTTG-AAAAACT
1 AAGTTTTGAAAAAACT
*
3460880 ATG-TTTGAAAAAAC-
1 AAGTTTTGAAAAAACT
3460894 AAGTTTTGAAA
1 AAGTTTTGAAA
3460905 TTAATATGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (16 bp):
AAGTTTTGAAAAAACT
Found at i:3460991 original size:21 final size:19
Alignment explanation
Indices: 3460967--3461005 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
3460957 AATTTGAAAA
3460967 AAAAAATAATTTTGAAAATTC
1 AAAAAATAA--TTGAAAATTC
*
3460988 AAAAATTAATTGAAAATT
1 AAAAAATAATTGAAAATT
3461006 TGTGAGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
21 8 0.47
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAAATAATTGAAAATTC
Found at i:3466160 original size:20 final size:20
Alignment explanation
Indices: 3466131--3466168 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3466121 TTCCAAAGTG
3466131 ATGCACCGATGCACCAATCC
1 ATGCACCGATGCACCAATCC
* *
3466151 ATGCATCGATGCATCAAT
1 ATGCACCGATGCACCAAT
3466169 TAATTTTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.21
Consensus pattern (20 bp):
ATGCACCGATGCACCAATCC
Found at i:3470349 original size:12 final size:12
Alignment explanation
Indices: 3470332--3470357 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
3470322 GAGTAATTCA
3470332 GATGAAGATGAC
1 GATGAAGATGAC
3470344 GATGAAGATGAC
1 GATGAAGATGAC
3470356 GA
1 GA
3470358 GGAAATGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.35, T:0.15
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:3474644 original size:24 final size:24
Alignment explanation
Indices: 3474617--3474697 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
3474607 ACACTTAACA
3474617 GTGCATCGATGCATCCCTTTGAAT
1 GTGCATCGATGCATCCCTTTGAAT
* *
3474641 GTGCATCGATTCAT-CATGTTG-A-
1 GTGCATCGATGCATCCCT-TTGAAT
*
3474663 -TGCACCGATGCA-CGCC-TTGAAT
1 GTGCATCGATGCATC-CCTTTGAAT
3474685 GTGCATCGATGCA
1 GTGCATCGATGCA
3474698 CAGGGTCATG
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
20 3 0.07
21 11 0.24
22 1 0.02
23 14 0.31
24 16 0.36
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (24 bp):
GTGCATCGATGCATCCCTTTGAAT
Found at i:3477401 original size:20 final size:20
Alignment explanation
Indices: 3477372--3477409 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3477362 TTCCAAAGTG
3477372 ATGCACCGATGCACCAATCC
1 ATGCACCGATGCACCAATCC
*
3477392 ATGCATCGATGCACCAAT
1 ATGCACCGATGCACCAAT
3477410 TAATTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGCACCGATGCACCAATCC
Found at i:3477491 original size:45 final size:46
Alignment explanation
Indices: 3477432--3477519 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
3477422 CATCGAATGT
* * *
3477432 ATTTTATGCGTCGATGCAC-ATACCATGCATCGATGCACTCAGTGC
1 ATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAGTGC
3477477 ATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAG
1 ATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAG
3477520 GCTTTTTCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 17 0.44
46 22 0.56
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (46 bp):
ATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAGTGC
Found at i:3480057 original size:23 final size:21
Alignment explanation
Indices: 3480014--3480066 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
3480004 TTCATATACC
*
3480014 ATATATAATTATATTTAATAA
1 ATATATAATTATATATAATAA
*
3480035 ATATATATATATATATATGATAA
1 ATATATA-AT-TATATATAATAA
3480058 A-AT-TAATTA
1 ATATATAATTA
3480067 AATGGAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 2 0.07
20 2 0.07
21 9 0.32
22 4 0.14
23 11 0.39
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
ATATATAATTATATATAATAA
Found at i:3482043 original size:3 final size:3
Alignment explanation
Indices: 3482037--3482166 Score: 99
Period size: 3 Copynumber: 45.0 Consensus size: 3
3482027 CTCTTTATTT
** *
3482037 ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ACC ATA CTA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * ** *
3482083 ATA ATA ATA ATA ATA ATA TTG ATA ATA ATA CTA CCA AT- ATA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
3482130 ATA ACA TTA ATA GT- ATA ATC ATA CTA AT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3482167 GTAACATTAA
Statistics
Matches: 96, Mismatches: 26, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
2 9 0.09
3 87 0.91
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:3482182 original size:40 final size:35
Alignment explanation
Indices: 3482118--3482206 Score: 92
Period size: 37 Copynumber: 2.4 Consensus size: 35
3482108 TAATACTACC
*
3482118 AATATAATATTAATAACATTAATAGTA-TAATCATACT
1 AATATAATAATAATAACATTAATAGTACT-ATCAT--T
*
3482155 AATATAATAATAGTAACATTAACAATAGTACTATCATT
1 AATATAATAATAATAACATT---AATAGTACTATCATT
3482193 AA-ATAATAATAATA
1 AATATAATAATAATA
3482207 TTAATAGTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
37 29 0.64
38 3 0.07
40 12 0.27
41 1 0.02
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (35 bp):
AATATAATAATAATAACATTAATAGTACTATCATT
Found at i:3490982 original size:20 final size:19
Alignment explanation
Indices: 3490967--3491042 Score: 62
Period size: 23 Copynumber: 3.6 Consensus size: 19
3490957 TGAGTTGTGG
3490967 ATATAACTTTTAAGTTTGC
1 ATATAACTTTTAAGTTTGC
*
3490986 ATATAACTTTTCCTTAAGTTAGC
1 ATATAAC--TT--TTAAGTTTGC
*
3491009 ATATAACTTTTCCTTAAGTTAGC
1 ATATAAC--TT--TTAAGTTTGC
3491032 ATATAACTTTT
1 ATATAACTTTT
3491043 CCTTAAGTTA
Statistics
Matches: 52, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
19 9 0.17
21 4 0.08
23 39 0.75
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (19 bp):
ATATAACTTTTAAGTTTGC
Found at i:3491002 original size:23 final size:23
Alignment explanation
Indices: 3490976--3491055 Score: 151
Period size: 23 Copynumber: 3.5 Consensus size: 23
3490966 GATATAACTT
*
3490976 TTAAGTTTGCATATAACTTTTCC
1 TTAAGTTAGCATATAACTTTTCC
3490999 TTAAGTTAGCATATAACTTTTCC
1 TTAAGTTAGCATATAACTTTTCC
3491022 TTAAGTTAGCATATAACTTTTCC
1 TTAAGTTAGCATATAACTTTTCC
3491045 TTAAGTTAGCA
1 TTAAGTTAGCA
3491056 CAACTTTTGC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (23 bp):
TTAAGTTAGCATATAACTTTTCC
Found at i:3494281 original size:5 final size:5
Alignment explanation
Indices: 3494271--3494300 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
3494261 GATGGATACA
3494271 AAATG AAATG AAATG AAATG AAATG AAATG
1 AAATG AAATG AAATG AAATG AAATG AAATG
3494301 CCTTATCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AAATG
Found at i:3494616 original size:22 final size:22
Alignment explanation
Indices: 3494554--3494617 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
3494544 ACTATATAGT
* *
3494554 CGTTTGTGTCATCCTTTGCAGC
1 CGTTGGTGTCATCCTTTGTAGC
* * *
3494576 TGTAGGTGTCATCTTTTGTAGC
1 CGTTGGTGTCATCCTTTGTAGC
*
3494598 CGTTGGTGACATCCTTTGTA
1 CGTTGGTGTCATCCTTTGTA
3494618 ATTGTTGGTG
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.12, C:0.20, G:0.25, T:0.42
Consensus pattern (22 bp):
CGTTGGTGTCATCCTTTGTAGC
Found at i:3499814 original size:13 final size:14
Alignment explanation
Indices: 3499783--3499816 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
3499773 ATGCAATTAA
3499783 AAAAATTCGCCTCT
1 AAAAATTCGCCTCT
3499797 AAAAATTCGCCTCT
1 AAAAATTCGCCTCT
3499811 AAAAAT
1 AAAAAT
3499817 CCTTTATACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (14 bp):
AAAAATTCGCCTCT
Found at i:3508460 original size:3 final size:3
Alignment explanation
Indices: 3508452--3508503 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
3508442 TAAATAAAAC
3508452 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3508500 ATA A
1 ATA A
3508504 ATATGGGACA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:3511595 original size:19 final size:20
Alignment explanation
Indices: 3511512--3511607 Score: 122
Period size: 20 Copynumber: 4.8 Consensus size: 20
3511502 TGCGATATTC
*
3511512 CAAATTCGCAACGCGATAGT
1 CAAATTCGCAACGCGAAAGT
* * *
3511532 TAAATTCTCAACGCAAAAGT
1 CAAATTCGCAACGCGAAAGT
3511552 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACGCGAAAGT
* **
3511572 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACGCGAAAGT
3511591 CAAATTCGCAACGCGAA
1 CAAATTCGCAACGCGAA
3511608 TTTAATTTCA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
19 16 0.25
20 48 0.75
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.21
Consensus pattern (20 bp):
CAAATTCGCAACGCGAAAGT
Found at i:3511610 original size:20 final size:20
Alignment explanation
Indices: 3511412--3511610 Score: 113
Period size: 20 Copynumber: 10.0 Consensus size: 20
3511402 AAATGACCAA
* *
3511412 CAAATTCGCAATGCG-ATCT
1 CAAATTCGCAACGCGAATTT
* *
3511431 CAAATTCGCAACACGAATTC
1 CAAATTCGCAACGCGAATTT
* * * *
3511451 CAATTTCGTAAC-CCAGTTT
1 CAAATTCGCAACGCGAATTT
* * *
3511470 CCAATTTCGCAATGTGAATATGT
1 -CAAATTCGCAACGCGAAT-T-T
** *
3511493 -AAA-TCGCATTGCGATATTC
1 CAAATTCGCAACGCGA-ATTT
*
3511512 CAAATTCGCAACGCGATAGTT
1 CAAATTCGCAACGCGA-ATTT
* * **
3511533 -AAATTCTCAACGCAAAAGT
1 CAAATTCGCAACGCGAATTT
**
3511552 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACGCGAATTT
*
3511572 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACGCGAATTT
3511591 CAAATTCGCAACGCGAATTT
1 CAAATTCGCAACGCGAATTT
3511611 AATTTCACAA
Statistics
Matches: 138, Mismatches: 32, Indels: 19
0.73 0.17 0.10
Matches are distributed among these distances:
19 35 0.25
20 83 0.60
21 18 0.13
22 1 0.01
23 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (20 bp):
CAAATTCGCAACGCGAATTT
Found at i:3514847 original size:18 final size:18
Alignment explanation
Indices: 3514824--3514859 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
3514814 AAGCAAAAGG
*
3514824 AAATCAAAATCTCAATCA
1 AAATCAAAATCCCAATCA
3514842 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
3514860 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:3520672 original size:20 final size:20
Alignment explanation
Indices: 3520633--3520673 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3520623 GCGTTGCGGT
* **
3520633 AGTCAAATTCGCAATGCGAA
1 AGTCAAATTCACAACACGAA
3520653 AGTCAAATTCACAACACGAA
1 AGTCAAATTCACAACACGAA
3520673 A
1 A
3520674 TAAGCGTTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.22, G:0.15, T:0.17
Consensus pattern (20 bp):
AGTCAAATTCACAACACGAA
Found at i:3520703 original size:54 final size:54
Alignment explanation
Indices: 3520594--3520703 Score: 166
Period size: 54 Copynumber: 2.0 Consensus size: 54
3520584 TGCGATCAAC
* * * *
3520594 GCGAAAGTCAAATTCGCAACGCGAAATAAGCGTTGCGGTAGTCAAATTCGCAAT
1 GCGAAAGTCAAATTCACAACACGAAATAAGCGTTGCGATAGTCAAATTCGAAAT
* *
3520648 GCGAAAGTCAAATTCACAACACGAAATAAGCGTTGTGATAGTCAAATTTGAAAT
1 GCGAAAGTCAAATTCACAACACGAAATAAGCGTTGCGATAGTCAAATTCGAAAT
3520702 GC
1 GC
3520704 AAAATAAGCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (54 bp):
GCGAAAGTCAAATTCACAACACGAAATAAGCGTTGCGATAGTCAAATTCGAAAT
Found at i:3520739 original size:20 final size:20
Alignment explanation
Indices: 3520714--3520772 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
3520704 AAAATAAGCA
3520714 TTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTATCGCG
*
3520734 TTGCGAATTTGACTTTCGCG
1 TTGCGAATTTGACTATCGCG
3520754 TTGCGAATTTGACTATCGC
1 TTGCGAATTTGACTATCGC
3520773 AACGCTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (20 bp):
TTGCGAATTTGACTATCGCG
Found at i:3520921 original size:25 final size:25
Alignment explanation
Indices: 3520883--3520932 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
3520873 AAATCAATTA
* *
3520883 AACATTGTTGTGGGTATATTATTTG
1 AACATTGTTATGGGTACATTATTTG
3520908 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
3520933 GAAAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.46
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:3521340 original size:18 final size:18
Alignment explanation
Indices: 3521319--3521355 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
3521309 GTAATTGGAG
3521319 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
3521337 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
3521355 T
1 T
3521356 ATAAATTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:3521362 original size:24 final size:24
Alignment explanation
Indices: 3521311--3521363 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
3521301 TTTAATATGT
* * *
3521311 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATA
*
3521335 AATTTGAGTTTGAATTTCAATATA
1 AATTTGAGTTTGAATTTAAATATA
3521359 AATTT
1 AATTT
3521364 TGGCTCCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATA
Found at i:3521702 original size:39 final size:39
Alignment explanation
Indices: 3521659--3521745 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
3521649 TCCGATGCTC
3521659 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
*
3521698 ATCAAAATCCAAATCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
3521737 ATCAAAATC
1 ATCAAAATC
3521746 TACAACTTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.47, C:0.21, G:0.15, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
Found at i:3521944 original size:20 final size:20
Alignment explanation
Indices: 3521919--3521993 Score: 63
Period size: 20 Copynumber: 4.0 Consensus size: 20
3521909 ATGTTGCGAT
3521919 CAATGCGAAAGTCAAATTCG
1 CAATGCGAAAGTCAAATTCG
3521939 CAATGCGAAA-T--AA---G
1 CAATGCGAAAGTCAAATTCG
**
3521953 CGTTGCGAAAGTCAAATTCG
1 CAATGCGAAAGTCAAATTCG
** *
3521973 CAGCGCGAGAGTCAAATTCG
1 CAATGCGAAAGTCAAATTCG
3521993 C
1 C
3521994 GAACCGAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
14 9 0.21
15 1 0.02
17 4 0.09
19 1 0.02
20 28 0.65
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (20 bp):
CAATGCGAAAGTCAAATTCG
Found at i:3522229 original size:61 final size:63
Alignment explanation
Indices: 3522098--3522238 Score: 171
Period size: 61 Copynumber: 2.2 Consensus size: 63
3522088 TTTTAGAAAC
* *
3522098 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAAATAATTCTTATTTACAAATCAAATT
1 AACAAATCAACTTTTACAAATCAATT--A-AAGCAAAAAAATAAATCTTATTTACAAATCAAATC
3522163 A
63 A
* * **
3522164 AACAAATCAACTTTTACAAATCAATT-AATC-AAAAAATAAATCTTATTTCCTCATC-AATCA
1 AACAAATCAACTTTTACAAATCAATTAAAGCAAAAAAATAAATCTTATTTACAAATCAAATCA
3522224 TAACAAATCAACTTT
1 -AACAAATCAACTTT
3522239 CAATGTAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
60 4 0.06
61 35 0.51
62 3 0.04
66 26 0.38
ACGTcount: A:0.51, C:0.18, G:0.01, T:0.30
Consensus pattern (63 bp):
AACAAATCAACTTTTACAAATCAATTAAAGCAAAAAAATAAATCTTATTTACAAATCAAATCA
Found at i:3523674 original size:21 final size:21
Alignment explanation
Indices: 3523650--3523708 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
3523640 GGCTTCTTCG
*
3523650 ATGATGATAGG-GACCTCTTGA
1 ATGATGATAGGCG-CATCTTGA
*
3523671 ATGAT-AGGAGGCGCATCTTGA
1 ATGATGA-TAGGCGCATCTTGA
*
3523692 ATGATGATAGGTGCATC
1 ATGATGATAGGCGCATC
3523709 GATCTTATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
20 1 0.03
21 28 0.90
22 2 0.06
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.27
Consensus pattern (21 bp):
ATGATGATAGGCGCATCTTGA
Found at i:3523681 original size:42 final size:42
Alignment explanation
Indices: 3523603--3523702 Score: 105
Period size: 42 Copynumber: 2.4 Consensus size: 42
3523593 GGCGGGACCA
* * * * * *
3523603 CTTGAACGATGACAGAGG-CCTCTTGAACGGTGGGAGGGGCTT
1 CTTGAATGATGATAG-GGACCTCTTGAACGATAGGAGGCGCAT
*
3523645 CTTCG-ATGATGATAGGGACCTCTTGAATGATAGGAGGCGCAT
1 CTT-GAATGATGATAGGGACCTCTTGAACGATAGGAGGCGCAT
3523687 CTTGAATGATGATAGG
1 CTTGAATGATGATAGG
3523703 TGCATCGATC
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
41 3 0.06
42 44 0.92
43 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (42 bp):
CTTGAATGATGATAGGGACCTCTTGAACGATAGGAGGCGCAT
Found at i:3525883 original size:19 final size:20
Alignment explanation
Indices: 3525861--3525903 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
3525851 AATTCGCAAC
3525861 GCGATTTT-AGTTTCGCGTT
1 GCGATTTTCAGTTTCGCGTT
*
3525880 GCGATTTTCATTTTCGCGTT
1 GCGATTTTCAGTTTCGCGTT
3525900 GCGA
1 GCGA
3525904 ATTTGGTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.12, C:0.19, G:0.26, T:0.44
Consensus pattern (20 bp):
GCGATTTTCAGTTTCGCGTT
Found at i:3525950 original size:13 final size:13
Alignment explanation
Indices: 3525932--3525963 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
3525922 GGGTTTCTTG
3525932 AACAAAAAGACAA
1 AACAAAAAGACAA
3525945 AACAAAAAGACAA
1 AACAAAAAGACAA
3525958 AACAAA
1 AACAAA
3525964 CACAAATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.78, C:0.16, G:0.06, T:0.00
Consensus pattern (13 bp):
AACAAAAAGACAA
Found at i:3526380 original size:20 final size:20
Alignment explanation
Indices: 3526355--3526403 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
3526345 GCGTAAAAAC
3526355 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
*
3526375 ATTTGACTATCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
3526395 ATTTGACTT
1 ATTTGACTT
3526404 CTGTGTTGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.41
Consensus pattern (20 bp):
ATTTGACTTTCGCGTTGCGA
Found at i:3526411 original size:20 final size:20
Alignment explanation
Indices: 3526355--3526414 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
3526345 GCGTAAAAAC
3526355 ATTTGACTT-TCGCGTTGCGA
1 ATTTGACTTCT-GCGTTGCGA
3526375 ATTTGACTATC-GCGTTGCGA
1 ATTTGACT-TCTGCGTTGCGA
*
3526395 ATTTGACTTCTGTGTTGCGA
1 ATTTGACTTCTGCGTTGCGA
3526415 TTTACAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 2 0.06
20 33 0.92
21 1 0.03
ACGTcount: A:0.17, C:0.18, G:0.25, T:0.40
Consensus pattern (20 bp):
ATTTGACTTCTGCGTTGCGA
Found at i:3526532 original size:20 final size:19
Alignment explanation
Indices: 3526485--3526555 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
3526475 ATTTACATAT
3526485 TCGCGTTGCGAAATTGGAA
1 TCGCGTTGCGAAATTGGAA
* *
3526504 ACTGGGTTGCGAAATTGGAA
1 TC-GCGTTGCGAAATTGGAA
*
3526524 TTCGCGTTGCG-AATTTGAGA
1 -TCGCGTTGCGAAATTGGA-A
3526544 TCGCGTTGCGAA
1 TCGCGTTGCGAA
3526556 TTTGTTGGTC
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
19 17 0.40
20 25 0.58
21 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.28
Consensus pattern (19 bp):
TCGCGTTGCGAAATTGGAA
Found at i:3528755 original size:15 final size:16
Alignment explanation
Indices: 3528717--3528756 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
3528707 ACAGAGCCTC
*
3528717 TGAATCATTCAGAATT
1 TGAATCATTCAGAACT
*
3528733 TGAATCATTCAGCACT
1 TGAATCATTCAGAACT
3528749 T-AATCATT
1 TGAATCATT
3528757 ATGAAGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (16 bp):
TGAATCATTCAGAACT
Found at i:3529779 original size:2 final size:2
Alignment explanation
Indices: 3529772--3529806 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
3529762 CCAATAATCA
3529772 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3529807 AAGATGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3543937 original size:31 final size:31
Alignment explanation
Indices: 3543891--3544015 Score: 171
Period size: 31 Copynumber: 4.0 Consensus size: 31
3543881 CCCGAAGGAC
*
3543891 CAGTCCATA-GATCCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
* *
3543922 CAGTCTATATGTCCCGAAGAACATAGGTACA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* **
3543953 CAGTCCATATTTCAAGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
3543984 CATTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
3544015 C
1 C
3544016 CCTCGACCCT
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
31 80 0.99
32 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:3546215 original size:26 final size:25
Alignment explanation
Indices: 3546168--3546216 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
3546158 TGGGGTCCCC
*
3546168 ATATAAAGATAAATAGAATGAAATA
1 ATATAAAGATAAATAAAATGAAATA
3546193 ATATATAAG-TAATATAAAATGAAA
1 ATATA-AAGATAA-ATAAAATGAAA
3546217 GAATGCATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (25 bp):
ATATAAAGATAAATAAAATGAAATA
Found at i:3547655 original size:20 final size:20
Alignment explanation
Indices: 3547626--3547678 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
3547616 AGAGGTCATA
*
3547626 TAGGATCATATAGATTCTTT
1 TAGGAACATATAGATTCTTT
3547646 TAGGAACATATAGATTCTTT
1 TAGGAACATATAGATTCTTT
*
3547666 TATGAACATATAG
1 TAGGAACATATAG
3547679 TTGCATGTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (20 bp):
TAGGAACATATAGATTCTTT
Found at i:3549145 original size:23 final size:23
Alignment explanation
Indices: 3549119--3549162 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
3549109 ACTCATCTTA
3549119 ATTTTGCCAAGACATTTCCATCC
1 ATTTTGCCAAGACATTTCCATCC
*
3549142 ATTTTGCCACGACATTTCCAT
1 ATTTTGCCAAGACATTTCCAT
3549163 TTGCTACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.25, C:0.30, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTTTGCCAAGACATTTCCATCC
Found at i:3553904 original size:22 final size:21
Alignment explanation
Indices: 3553849--3553922 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
3553839 ATAAATAAAT
*
3553849 GTTTATTTTGTTTTATA-TTA
1 GTTTATTTTGGTTTATATTTA
* *
3553869 TTGTTATATTGGTTTATATTTA
1 GT-TTATTTTGGTTTATATTTA
*
3553891 GTTTATTTTCGGTTAATTATTT-
1 GTTTATTTT-GGTTTA-TATTTA
*
3553913 TTTTATTTTG
1 GTTTATTTTG
3553923 TATTTTTAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
20 1 0.02
21 20 0.47
22 17 0.40
23 5 0.12
ACGTcount: A:0.19, C:0.01, G:0.12, T:0.68
Consensus pattern (21 bp):
GTTTATTTTGGTTTATATTTA
Found at i:3555693 original size:5 final size:5
Alignment explanation
Indices: 3555677--3555717 Score: 64
Period size: 5 Copynumber: 8.2 Consensus size: 5
3555667 TCAAGGTACC
* *
3555677 TTGCA TTTCA TTGCA TTGCA TTACA TTGCA TTGCA TTGCA T
1 TTGCA TTGCA TTGCA TTGCA TTGCA TTGCA TTGCA TTGCA T
3555718 AGTATGTACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.44
Consensus pattern (5 bp):
TTGCA
Found at i:3558041 original size:76 final size:75
Alignment explanation
Indices: 3557960--3558107 Score: 217
Period size: 76 Copynumber: 2.0 Consensus size: 75
3557950 TAAACTCAAA
* *
3557960 TTTAGGATAATATTTTAAACATTATAT-TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTA
1 TTTAGGATAATATTTT-AACATTATATCTTTATCTTTGCATTTAAGTTTAAATAGG-TTTTAGTA
3558024 TTTTAATTAAGT
64 TTTTAATTAAGT
* * * *
3558036 TTTAGGATATTATTTTTATATTTTATCTTTATCTTTGCATTTAAGTTTAAATAGGTTTTAGTATT
1 TTTAGGATAATATTTTAACATTATATCTTTATCTTTGCATTTAAGTTTAAATAGGTTTTAGTATT
3558101 TTAATTA
66 TTAATTA
3558108 GGATTTAGAA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
75 24 0.37
76 41 0.63
ACGTcount: A:0.30, C:0.03, G:0.10, T:0.57
Consensus pattern (75 bp):
TTTAGGATAATATTTTAACATTATATCTTTATCTTTGCATTTAAGTTTAAATAGGTTTTAGTATT
TTAATTAAGT
Found at i:3558133 original size:75 final size:76
Alignment explanation
Indices: 3557987--3558134 Score: 219
Period size: 75 Copynumber: 2.0 Consensus size: 76
3557977 AACATTATAT
* * * * *
3557987 TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGTTTTAGGATATTATTTT
1 TTTATCTTTGCATTTAAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTA
3558052 TATATTTTATC
66 TATATTTTATC
*
3558063 TTTATCTTTGCATTTAAGTTTAAATAGG-TTTTAGTATTTTAATTAGGATTTAGAATATTATATT
1 TTTATCTTTGCATTTAAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTAT-TT
3558127 AT-TATTTT
65 ATATATTTT
3558135 TAGGTATTTT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
75 36 0.55
76 29 0.45
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.58
Consensus pattern (76 bp):
TTTATCTTTGCATTTAAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTA
TATATTTTATC
Found at i:3558136 original size:76 final size:76
Alignment explanation
Indices: 3557987--3558136 Score: 223
Period size: 76 Copynumber: 2.0 Consensus size: 76
3557977 AACATTATAT
* * * *
3557987 TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGTATTTTAATTAAGTTTTAGGATATTATTTT
1 TTTATCTTTGCATTTAAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTT
3558052 TATATTTTATC
66 TATATTTTATC
*
3558063 TTTATCTTTGCATTTAAGTTTAAATAGG-TTTTAGTATTTTAATTAGGATTTAGAATATTATATT
1 TTTATCTTTGCATTTAAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTAT-TT
3558127 ATTAT-TTTTA
65 -TTATATTTTA
3558137 GGTATTTTAG
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
75 30 0.45
76 33 0.49
77 4 0.06
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.58
Consensus pattern (76 bp):
TTTATCTTTGCATTTAAGTTTAAATAGGTTTTTAGTATTTTAATTAAGATTTAGAATATTATTTT
TATATTTTATC
Found at i:3561773 original size:24 final size:24
Alignment explanation
Indices: 3561746--3561793 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
3561736 GCATGACATG
3561746 GTACATAAATGTTTTATACATCAT
1 GTACATAAATGTTTTATACATCAT
*
3561770 GTACATAGATGTTTTATACATCAT
1 GTACATAAATGTTTTATACATCAT
3561794 CAGGAAGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (24 bp):
GTACATAAATGTTTTATACATCAT
Found at i:3562501 original size:17 final size:17
Alignment explanation
Indices: 3562476--3562517 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
3562466 CATGCATGAG
*
3562476 TTGTATTACACTTTTTA
1 TTGTTTTACACTTTTTA
3562493 TTGTTTTACACTTTTTA
1 TTGTTTTACACTTTTTA
3562510 TTGTTTTA
1 TTGTTTTA
3562518 GTTGCCTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.19, C:0.10, G:0.07, T:0.64
Consensus pattern (17 bp):
TTGTTTTACACTTTTTA
Found at i:3565077 original size:16 final size:15
Alignment explanation
Indices: 3565056--3565120 Score: 85
Period size: 16 Copynumber: 4.1 Consensus size: 15
3565046 CATAAGAGCT
3565056 AAAAATAGAAAAAGAA
1 AAAAATAGAAAAA-AA
*
3565072 AAAAATAGAAAAATAG
1 AAAAATAGAAAAA-AA
3565088 AAAAATAGAAAAAAA
1 AAAAATAGAAAAAAA
*
3565103 AGAAATAAGAAAAAAA
1 AAAAAT-AGAAAAAAA
3565119 AA
1 AA
3565121 GATGAGAGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
15 6 0.14
16 37 0.86
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.08
Consensus pattern (15 bp):
AAAAATAGAAAAAAA
Found at i:3565083 original size:24 final size:23
Alignment explanation
Indices: 3565056--3565120 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 23
3565046 CATAAGAGCT
3565056 AAAAATAGAAAAAGAAAAAAATAG
1 AAAAATAGAAAAAGAAAAAAA-AG
3565080 AAAAATAGAAAAATAGAAAAAAAAG
1 AAAAATAG-AAAA-AGAAAAAAAAG
*
3565105 AAATA-AGAAAAA-AAAA
1 AAAAATAGAAAAAGAAAA
3565121 GATGAGAGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
21 4 0.11
22 1 0.03
23 4 0.11
24 10 0.26
25 10 0.26
26 9 0.24
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.08
Consensus pattern (23 bp):
AAAAATAGAAAAAGAAAAAAAAG
Found at i:3567467 original size:31 final size:32
Alignment explanation
Indices: 3567424--3567483 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
3567414 AAGAAATTGA
*
3567424 AGCACTCTAAAAGAAAGAAAG-AAAGAAATCC
1 AGCACTCAAAAAGAAAGAAAGCAAAGAAATCC
*
3567455 AGCACTCAAAAAGAAGGAAAGCAAAGAAA
1 AGCACTCAAAAAGAAAGAAAGCAAAGAAA
3567484 AGAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 19 0.73
32 7 0.27
ACGTcount: A:0.60, C:0.15, G:0.18, T:0.07
Consensus pattern (32 bp):
AGCACTCAAAAAGAAAGAAAGCAAAGAAATCC
Found at i:3569689 original size:11 final size:13
Alignment explanation
Indices: 3569657--3569686 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3569647 TGGCCAAAGA
3569657 TGAAAAGGTATGT
1 TGAAAAGGTATGT
3569670 TGAAAAGGTATG-
1 TGAAAAGGTATGT
3569682 TGAAA
1 TGAAA
3569687 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:3576171 original size:16 final size:16
Alignment explanation
Indices: 3576150--3576183 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
3576140 GTTTCTTGGC
3576150 AGACTCACCTCCATCA
1 AGACTCACCTCCATCA
*
3576166 AGACTCACGTCCATCA
1 AGACTCACCTCCATCA
3576182 AG
1 AG
3576184 CCTCCCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.38, G:0.12, T:0.18
Consensus pattern (16 bp):
AGACTCACCTCCATCA
Found at i:3586389 original size:28 final size:27
Alignment explanation
Indices: 3586357--3586425 Score: 115
Period size: 26 Copynumber: 2.6 Consensus size: 27
3586347 TAACTTTTAT
3586357 ATATATATATATATATGCACAAATGTA
1 ATATATATATATATATGCACAAATGTA
3586384 A-ATATATATATATATGCACAAATGTA
1 ATATATATATATATATGCACAAATGTA
3586410 ATA-ATATATATTATAT
1 ATATATATATA-TATAT
3586426 TATAATTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
26 33 0.82
27 7 0.17
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (27 bp):
ATATATATATATATATGCACAAATGTA
Found at i:3586526 original size:2 final size:2
Alignment explanation
Indices: 3586513--3586678 Score: 132
Period size: 2 Copynumber: 85.5 Consensus size: 2
3586503 TCGTGAGACA
* * *
3586513 AT AT AT AC AT AT AT A- AT AT AC CT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3586554 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
** ** ** * * *
3586595 AT AT GC GC ACT CC AT AT AT AT AT CAC AT A- AT -T A- AC CT A- AT
1 AT AT AT AT A-T AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT
*
3586635 A- ACC A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3586676 AT A
1 AT A
3586679 ATTTGAATAA
Statistics
Matches: 134, Mismatches: 19, Indels: 22
0.77 0.11 0.13
Matches are distributed among these distances:
1 8 0.06
2 124 0.93
3 2 0.01
ACGTcount: A:0.48, C:0.08, G:0.01, T:0.42
Consensus pattern (2 bp):
AT
Found at i:3595852 original size:2 final size:2
Alignment explanation
Indices: 3595845--3595952 Score: 162
Period size: 2 Copynumber: 54.0 Consensus size: 2
3595835 CGAAATTGAG
* *
3595845 TC TC TC TC TC TC TC TC TC TC CC TC CC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* *
3595887 TC TC TC TC TC CC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* *
3595929 CC TC TC TC TC CC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC
3595953 CATTAAATTT
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 94 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (2 bp):
TC
Found at i:3595886 original size:32 final size:32
Alignment explanation
Indices: 3595845--3595952 Score: 198
Period size: 32 Copynumber: 3.4 Consensus size: 32
3595835 CGAAATTGAG
3595845 TCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTC
1 TCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTC
3595877 TCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTC
1 TCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTC
* *
3595909 TCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCC
1 TCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTC
3595941 TCTCTCTCTCTC
1 TCTCTCTCTCTC
3595953 CATTAAATTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 74 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (32 bp):
TCTCTCTCTCTCTCTCTCTCCCTCCCTCTCTC
Found at i:3599809 original size:8 final size:8
Alignment explanation
Indices: 3599796--3599821 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
3599786 TTCTTTTGAA
3599796 TTCTCTAC
1 TTCTCTAC
3599804 TTCTCTAC
1 TTCTCTAC
3599812 TTCTCTAC
1 TTCTCTAC
3599820 TT
1 TT
3599822 TCTTTTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.54
Consensus pattern (8 bp):
TTCTCTAC
Found at i:3610115 original size:20 final size:19
Alignment explanation
Indices: 3610062--3610116 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
3610052 TTCGTGAAAG
3610062 AAGTGAA-AATATGTTCTTA
1 AAGTGAATAAT-TGTTCTTA
*
3610081 AGAG-GGATAACTTGTTCGTTA
1 A-AGTGAATAA-TTGTTC-TTA
3610102 AAGTGAATAATTGTT
1 AAGTGAATAATTGTT
3610117 TTTTATTGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
19 3 0.10
20 16 0.55
21 10 0.34
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.36
Consensus pattern (19 bp):
AAGTGAATAATTGTTCTTA
Found at i:3611563 original size:66 final size:64
Alignment explanation
Indices: 3611476--3611613 Score: 163
Period size: 64 Copynumber: 2.1 Consensus size: 64
3611466 GGGTTATCGG
* *
3611476 TACCCTATGAAGGTGTATCGATAACCCCTTCTTAAC-GAAAAATTACAGAATGTTAGTAGGGTAT
1 TACCCTATGAAGGGGTATCGAT-ACCCC--CTTAACAG-AAAATTACAGAATGTCAGTAGGGTAT
3611540 CAA
62 CAA
* * * *
3611543 TACCCTAT-AGGGGGTATCGATACCCCCTTAACATGAAAATTCCAGAATGTCATTAGGGTATCTA
1 TACCCTATGAAGGGGTATCGATACCCCCTTAACA-GAAAATTACAGAATGTCAGTAGGGTATCAA
3611607 TACCCTA
1 TACCCTA
3611614 GATAGGATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
63 6 0.10
64 32 0.51
65 6 0.10
66 11 0.17
67 8 0.13
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (64 bp):
TACCCTATGAAGGGGTATCGATACCCCCTTAACAGAAAATTACAGAATGTCAGTAGGGTATCAA
Found at i:3612637 original size:2 final size:2
Alignment explanation
Indices: 3612630--3612654 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3612620 AGTTATGAGA
3612630 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
3612655 ACAAGCTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3613894 original size:31 final size:31
Alignment explanation
Indices: 3613859--3613967 Score: 94
Period size: 31 Copynumber: 3.5 Consensus size: 31
3613849 TAGGTCCCGA
* *
3613859 AGAACCTAGGTAAACTGTCCATATGTTCCTT
1 AGAACATAGGTAAACTGTCCATATGTTCCAT
* * * * * *
3613890 AGAACATACGTATACTTTCCATATATCTCGAA
1 AGAACATAGGTAAACTGTCCATATGT-TCCAT
* *
3613922 AG-ACATAGGTAATTCTGTCCATATGTTCCGT
1 AGAACATAGGTAA-ACTGTCCATATGTTCCAT
*
3613953 AGAATATAGGTAAAC
1 AGAACATAGGTAAAC
3613968 CCTTGACTCT
Statistics
Matches: 57, Mismatches: 18, Indels: 6
0.70 0.22 0.07
Matches are distributed among these distances:
31 34 0.60
32 23 0.40
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (31 bp):
AGAACATAGGTAAACTGTCCATATGTTCCAT
Found at i:3618605 original size:32 final size:32
Alignment explanation
Indices: 3618483--3618607 Score: 98
Period size: 31 Copynumber: 4.0 Consensus size: 32
3618473 AACCCCGACA
* * *
3618483 ACTGTCCATAAG-TCCTGAAGAACCTAGGTAA-
1 ACTGTCCATATGTTCC-GTAGAACATAGGTAAT
* *
3618514 ACTGTCCATATATTCCTTAGAACATAGGT-AT
1 ACTGTCCATATGTTCCGTAGAACATAGGTAAT
* * *
3618545 AATGTCCATATG-TCTCG-AAAGACGTAGGTAAT
1 ACTGTCCATATGTTC-CGTAGA-ACATAGGTAAT
* *
3618577 TCTGTCTATATGTTCCGTAGAACATAGGTAA
1 ACTGTCCATATGTTCCGTAGAACATAGGTAA
3618608 ACCCTCGACT
Statistics
Matches: 72, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
30 5 0.07
31 38 0.53
32 25 0.35
33 4 0.06
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (32 bp):
ACTGTCCATATGTTCCGTAGAACATAGGTAAT
Found at i:3623199 original size:31 final size:31
Alignment explanation
Indices: 3623156--3623283 Score: 100
Period size: 31 Copynumber: 4.1 Consensus size: 31
3623146 GAACCCCGAC
*
3623156 AACTGTAT-ATATGTCCCGAAGAACCTAGGTA
1 AACTGT-TCATATGTCCCGAAGAACATAGGTA
* **
3623187 AACTGTTCATATGTTCCTTAGAACATAGGTA
1 AACTGTTCATATGTCCCGAAGAACATAGGTA
* * * *
3623218 TACTGTCCATATGTCTCGAA-AGACATAGATA
1 AACTGTTCATATGTCCCGAAGA-ACATAGGTA
* * *
3623249 ATTA-TGTCCATATGTTCCGTAGAACATAGGTA
1 A--ACTGTTCATATGTCCCGAAGAACATAGGTA
3623281 AAC
1 AAC
3623284 CCTCGACTCT
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
30 3 0.04
31 47 0.63
32 23 0.31
33 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (31 bp):
AACTGTTCATATGTCCCGAAGAACATAGGTA
Found at i:3624237 original size:24 final size:20
Alignment explanation
Indices: 3624180--3624256 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 20
3624170 TTTCCCTTGA
*
3624180 AGTGCATCGATGCATTCTAC
1 AGTGCATCGATGCATCCTAC
*
3624200 AGTGTATCGATGCATCCCTTAAC
1 AGTGCATCGATGCAT-CC-T-AC
*
3624223 ATGTGCATCGATGCACTCCT-T
1 A-GTGCATCGATGCA-TCCTAC
3624244 A-TGCATCGATGCA
1 AGTGCATCGATGCA
3624257 CTAATTGCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
19 12 0.25
20 14 0.29
21 2 0.04
22 1 0.02
23 4 0.08
24 14 0.29
25 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (20 bp):
AGTGCATCGATGCATCCTAC
Found at i:3625325 original size:18 final size:18
Alignment explanation
Indices: 3625300--3625385 Score: 100
Period size: 18 Copynumber: 4.6 Consensus size: 18
3625290 GTCAAGGGTT
*
3625300 ACAGTGGTCCTACGGGAC
1 ACAGTGGTCCTACGGAAC
* * *
3625318 ATAGTGGTCCTTCGGGACAAT
1 ACAGTGGTCCTAC-GG--AAC
*
3625339 ACAGTGGTCTTACGGAAC
1 ACAGTGGTCCTACGGAAC
3625357 ACAGTGGTCCTACGGAAC
1 ACAGTGGTCCTACGGAAC
3625375 ACAGTGGTCCT
1 ACAGTGGTCCT
3625386 TCAGGACAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
18 41 0.73
19 2 0.04
20 2 0.04
21 11 0.20
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (18 bp):
ACAGTGGTCCTACGGAAC
Found at i:3626534 original size:7 final size:7
Alignment explanation
Indices: 3626522--3626548 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
3626512 TATGTCCGTC
3626522 ACGTTCT
1 ACGTTCT
3626529 ACGTTCT
1 ACGTTCT
3626536 ACGTTCT
1 ACGTTCT
3626543 ACGTTC
1 ACGTTC
3626549 GTGGCACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.30, G:0.15, T:0.41
Consensus pattern (7 bp):
ACGTTCT
Found at i:3630603 original size:2 final size:2
Alignment explanation
Indices: 3630593--3630641 Score: 89
Period size: 2 Copynumber: 24.0 Consensus size: 2
3630583 TAAGTATTGA
3630593 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3630636 AT AT AT
1 AT AT AT
3630642 GAGTTAGAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 44 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:3632317 original size:51 final size:51
Alignment explanation
Indices: 3632241--3632344 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
3632231 TCGCTCTAGT
3632241 ATATAATTAATGTTTCAATCATATAATATATACACACAAGCATATTTTCAC
1 ATATAATTAATGTTTCAATCATATAATATATACACACAAGCATATTTTCAC
*
3632292 ATATAATTAATGTTTCAATCATATAATATATGCACACAAGCATATTTTCAC
1 ATATAATTAATGTTTCAATCATATAATATATACACACAAGCATATTTTCAC
3632343 AT
1 AT
3632345 CAAATGTATT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (51 bp):
ATATAATTAATGTTTCAATCATATAATATATACACACAAGCATATTTTCAC
Found at i:3633772 original size:15 final size:15
Alignment explanation
Indices: 3633722--3633782 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
3633712 AAAAGTTAAA
*
3633722 AGTATTTTTACATTT
1 AGTATTTTTATATTT
* * *
3633737 A-TTTTTTTATAATA
1 AGTATTTTTATATTT
* *
3633751 ATTTATTTTTATTTTT
1 A-GTATTTTTATATTT
3633767 AGTATTTTTATATTT
1 AGTATTTTTATATTT
3633782 A
1 A
3633783 ATTTTTGAAT
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
14 10 0.29
15 14 0.41
16 10 0.29
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (15 bp):
AGTATTTTTATATTT
Found at i:3633780 original size:23 final size:24
Alignment explanation
Indices: 3633754--3633803 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
3633744 TATAATAATT
* *
3633754 TATTTTTATTTTT-AGTATTTTTA
1 TATTTTAATTTTTGAATATTTTTA
*
3633777 TA-TTTAATTTTTGAATATTTTTG
1 TATTTTAATTTTTGAATATTTTTA
3633800 TATT
1 TATT
3633804 ATAGATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
22 9 0.41
23 12 0.55
24 1 0.05
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (24 bp):
TATTTTAATTTTTGAATATTTTTA
Found at i:3637507 original size:2 final size:2
Alignment explanation
Indices: 3637500--3637526 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3637490 TACTTGTAGA
3637500 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
3637527 GTGCGATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3638932 original size:17 final size:17
Alignment explanation
Indices: 3638910--3638944 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
3638900 AAGCCGAGGA
3638910 AGGTCCTGTTGTAGCGG
1 AGGTCCTGTTGTAGCGG
3638927 AGGTCCTGTTGTAGCGG
1 AGGTCCTGTTGTAGCGG
3638944 A
1 A
3638945 CCTATATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.17, G:0.40, T:0.29
Consensus pattern (17 bp):
AGGTCCTGTTGTAGCGG
Done.