genome.fa.s7747.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007747.1 Hibiscus syriacus cultivar Beakdansim tig00110010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73857

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1677--1742	33	2.0	34	90	3	107	37	24	15	22	1.92
3115--3157	21	2.0	21	95	0	77	30	13	25	30	1.94
3845--3890	19	2.4	19	100	0	92	43	15	6	34	1.72
5594--5627	17	2.1	16	94	5	59	41	14	5	38	1.70
6100--6167	35	1.9	35	90	0	109	32	0	22	45	1.52
7831--7912	42	2.0	42	85	0	110	35	21	18	24	1.96
10321--10559	130	1.8	130	96	1	444	33	9	28	28	1.89
18903--19052	60	2.5	59	79	13	164	40	6	20	33	1.76
24221--24346	64	2.0	64	98	0	243	33	21	13	31	1.92
27348--27477	65	2.0	65	100	0	260	33	4	23	38	1.75
28151--28186	2	18.0	2	100	0	72	50	0	0	50	1.00
28447--28495	21	2.3	21	89	0	71	22	51	8	18	1.72
40381--40736	176	2.0	176	98	0	685	25	13	23	38	1.91
42752--42777	2	13.0	2	100	0	52	50	0	0	50	1.00
46356--46390	16	2.2	16	90	5	54	80	0	2	17	0.84
47490--48054	283	2.0	283	96	0	1049	28	20	19	31	1.97
48055--48777	84	8.7	83	75	7	610	26	20	24	29	1.99
48079--48777	165	4.2	165	80	5	617	26	20	23	29	1.99
48057--48646	249	2.4	247	87	1	811	25	20	24	29	1.99
48057--48777	249	2.9	249	83	2	664	26	20	24	29	1.99
50598--50638	14	3.1	14	82	10	59	73	0	19	7	1.07
54983--55016	2	18.0	2	88	11	54	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56279--56682	39	10.4	39	89	1	603	35	17	17	29	1.93
56651--56933	76	3.7	75	77	12	251	42	13	13	30	1.83
60372--60415	15	3.1	15	81	18	51	47	11	20	20	1.80
61117--61169	27	1.9	28	92	3	90	60	11	15	13	1.59
62616--62674	2	30.0	2	96	3	111	49	0	0	50	1.00
66074--66166	21	4.6	20	79	4	105	40	18	24	16	1.90
66074--66166	41	2.3	41	98	0	177	40	18	24	16	1.90
66093--66227	41	3.3	41	81	8	141	38	21	20	19	1.94
66155--66244	20	4.4	20	79	8	83	33	25	16	24	1.96
66436--66479	22	2.0	22	95	0	79	20	45	15	18	1.85
66741--66778	20	1.9	20	88	0	58	13	15	21	50	1.78
68093--68137	18	2.5	18	85	0	63	26	46	15	11	1.79
68613--68711	19	5.4	19	75	13	73	42	23	21	13	1.87
68723--68780	14	3.9	14	79	16	71	8	17	25	48	1.75
68718--68796	32	2.4	33	95	2	142	10	18	24	46	1.80
68737--68854	20	6.4	19	77	11	95	13	20	24	41	1.88
70814--70884	19	3.7	19	94	0	115	47	18	21	12	1.81
70814--70896	38	2.3	36	88	10	118	45	19	21	13	1.84
70923--70972	20	2.5	20	96	0	91	18	22	26	34	1.96
72020--72073	24	2.2	24	90	0	81	24	16	20	38	1.92

Tables:   1

The End!