Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007748.1 Hibiscus syriacus cultivar Beakdansim tig00110013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4568288
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 24
Found at i:1004178 original size:39 final size:39
Alignment explanation
Indices: 1004127--1004203 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
1004117 TGCGATTTTC
* * *
1004127 CTAATTCGCAATGCGAATACGTAAATCGCAATGCGAATA
1 CTAAATCGCAATGCGAATACATAAATCGCAACGCGAATA
1004166 CTAAATCGCAATGCGAATACATAAATCGCAACGCGAAT
1 CTAAATCGCAATGCGAATACATAAATCGCAACGCGAAT
1004204 CTGACTATCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.21
Consensus pattern (39 bp):
CTAAATCGCAATGCGAATACATAAATCGCAACGCGAATA
Found at i:1004425 original size:22 final size:22
Alignment explanation
Indices: 1004400--1004465 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
1004390 AGCGACATCC
1004400 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
*
1004422 GTCCCCATCTCCGACGATATCA
1 GTCCCCATCTCCGACGAAATCA
*
1004444 GTCTCCATCTCC-AGCGAAATCA
1 GTCCCCATCTCCGA-CGAAATCA
1004466 TTCACGGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
21 1 0.03
22 39 0.98
ACGTcount: A:0.26, C:0.39, G:0.14, T:0.21
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:1004847 original size:20 final size:20
Alignment explanation
Indices: 1004799--1004849 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
1004789 CGATTCTGTC
**
1004799 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
1004819 GTTGCGATTTTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
1004839 GTTGCGATTTT
1 GTTGCGATTTT
1004850 AAGTTTCAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.14, G:0.24, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCGT
Found at i:1004856 original size:20 final size:20
Alignment explanation
Indices: 1004813--1004856 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
1004803 CGATAGTCAT
* *
1004813 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTTAAG
1004833 TTTCGTGTTGCGATTTTAAG
1 TTTCGTGTTGCGATTTTAAG
1004853 TTTC
1 TTTC
1004857 AGAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTTAAG
Found at i:1006753 original size:20 final size:20
Alignment explanation
Indices: 1006728--1006802 Score: 116
Period size: 20 Copynumber: 3.8 Consensus size: 20
1006718 AGAATAGTTT
1006728 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
1006748 ACTATCGCCAATACG-AAATG
1 ACTATCG-CAATGCGAAAATG
*
1006768 ACTATCGCAACGCGAAAATG
1 ACTATCGCAATGCGAAAATG
1006788 ACTATCGCAATGCGA
1 ACTATCGCAATGCGA
1006803 TAGTCATTGC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 5 0.10
20 38 0.78
21 6 0.12
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.19
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:1006855 original size:20 final size:20
Alignment explanation
Indices: 1006830--1006896 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
1006820 GATTCTCTCG
1006830 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCA
1006850 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCA
** *
1006870 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCA
1006890 TTGCGAT
1 TTGCGAT
1006897 TTTAAGTTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCA
Found at i:1007431 original size:21 final size:20
Alignment explanation
Indices: 1007380--1007483 Score: 84
Period size: 21 Copynumber: 5.0 Consensus size: 20
1007370 GACTCACCTG
* *
1007380 TCATCGTTCAAGAGTCATCCCC
1 TCATCGTTCAAGAGGC--CCCT
1007402 T-ATCGTTCAAGAGGCCCCT
1 TCATCGTTCAAGAGGCCCCT
* *
1007421 ATCATCATTCAAGAGTCCCCT
1 -TCATCGTTCAAGAGGCCCCT
* *
1007442 TCCACCGTTCAAGAGGCCACT
1 T-CATCGTTCAAGAGGCCCCT
* *
1007463 GTCATCGTTGAAGAGGTCCCT
1 -TCATCGTTCAAGAGGCCCCT
1007484 CCCAACATTC
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
19 3 0.05
20 2 0.03
21 59 0.89
22 2 0.03
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (20 bp):
TCATCGTTCAAGAGGCCCCT
Found at i:1009027 original size:14 final size:14
Alignment explanation
Indices: 1009008--1009061 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
1008998 GGAAATGACT
1009008 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
1009022 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
1009041 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
1009055 ATCGCAA
1 ATCGCAA
1009062 TGCGAAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.30
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:1009076 original size:34 final size:33
Alignment explanation
Indices: 1008988--1009083 Score: 147
Period size: 33 Copynumber: 2.8 Consensus size: 33
1008978 AAAACAGACT
* **
1008988 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1009022 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1009055 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
1009084 CGAAATTAGT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 32 0.55
34 26 0.45
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:1009079 original size:20 final size:19
Alignment explanation
Indices: 1009021--1009089 Score: 76
Period size: 19 Copynumber: 3.8 Consensus size: 19
1009011 GCAACGAGAG
1009021 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
1009040 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
1009054 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
1009074 AATCGCAACGCGAAAT
1 AATCGCAATGCGAAAT
1009090 TAGTTTCGCG
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
14 10 0.24
15 1 0.02
16 2 0.05
17 2 0.05
19 13 0.32
20 13 0.32
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:1009118 original size:20 final size:20
Alignment explanation
Indices: 1009093--1009205 Score: 114
Period size: 20 Copynumber: 6.0 Consensus size: 20
1009083 GCGAAATTAG
**
1009093 TTTCGCGTTGCGATTTTCAT
1 TTTCGCGTTGCGATAGTCAT
*
1009113 TTTCGCATTGCGAT--T--T
1 TTTCGCGTTGCGATAGTCAT
*
1009129 TCTC--GTTGCGATAGTCAT
1 TTTCGCGTTGCGATAGTCAT
*
1009147 TTTAGCGTTGCGATAGTCA-
1 TTTCGCGTTGCGATAGTCAT
1009166 TTTCAGCGTTGCGATAGTCAT
1 TTTC-GCGTTGCGATAGTCAT
*
1009187 ATTCGCGTTGCGATAGTCA
1 TTTCGCGTTGCGATAGTCA
1009206 AATGAATGTC
Statistics
Matches: 78, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
14 7 0.09
16 5 0.06
18 4 0.05
19 3 0.04
20 56 0.72
21 3 0.04
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.41
Consensus pattern (20 bp):
TTTCGCGTTGCGATAGTCAT
Found at i:1009147 original size:34 final size:34
Alignment explanation
Indices: 1009093--1009160 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
1009083 GCGAAATTAG
** *
1009093 TTTCGCGTTGCGATTTTCATTTTCGCATTGCGAT
1 TTTCGCGTTGCGATAGTCATTTTAGCATTGCGAT
* *
1009127 TTTCTCGTTGCGATAGTCATTTTAGCGTTGCGAT
1 TTTCGCGTTGCGATAGTCATTTTAGCATTGCGAT
1009161 AGTCATTTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.13, C:0.19, G:0.22, T:0.46
Consensus pattern (34 bp):
TTTCGCGTTGCGATAGTCATTTTAGCATTGCGAT
Found at i:1011556 original size:24 final size:24
Alignment explanation
Indices: 1011522--1011575 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
1011512 CTGAAACATC
1011522 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
1011546 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
1011570 ATCAAA
1 ATCAAA
1011576 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:1011700 original size:24 final size:24
Alignment explanation
Indices: 1011666--1011719 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
1011656 CTGAAACATC
1011666 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
1011690 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
1011714 ATCAAA
1 ATCAAA
1011720 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:1011729 original size:144 final size:146
Alignment explanation
Indices: 1011468--1011757 Score: 566
Period size: 144 Copynumber: 2.0 Consensus size: 146
1011458 AATTCGGGTA
1011468 TTGGCCAATATCAAAATCATTACACGCAGGGTCTGTTTCTACTTCTGAAACATCATCAAAATCCG
1 TTGGCCAATATCAAAATCATTACACGCAGGGTCTGTTTCTACTTCTGAAACATCATCAAAATCCG
1011533 AGTATTGACCAAGATCAAAGTCCGGGTATTGACCAAGATCAAATTTCGAATACCGACTAGTACTC
66 AGTATTGACCAAGATCAAAGTCCGGGTATTGACCAAGATCAAATTTCGAATACCGACTAGTACTC
1011598 ACAATTTTTTC-GTTG
131 ACAATTTTTTCTGTTG
1011613 TTGGCCAATATCAAAATCATTACACGCA-GGTCTGTTTCTACTTCTGAAACATCATCAAAATCCG
1 TTGGCCAATATCAAAATCATTACACGCAGGGTCTGTTTCTACTTCTGAAACATCATCAAAATCCG
1011677 AGTATTGACCAAGATCAAAGTCCGGGTATTGACCAAGATCAAATTTCGAATACCGACTAGTACTC
66 AGTATTGACCAAGATCAAAGTCCGGGTATTGACCAAGATCAAATTTCGAATACCGACTAGTACTC
1011742 ACAATTTTTTCTGTTG
131 ACAATTTTTTCTGTTG
1011758 GCTCATCATC
Statistics
Matches: 144, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
144 112 0.78
145 32 0.22
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (146 bp):
TTGGCCAATATCAAAATCATTACACGCAGGGTCTGTTTCTACTTCTGAAACATCATCAAAATCCG
AGTATTGACCAAGATCAAAGTCCGGGTATTGACCAAGATCAAATTTCGAATACCGACTAGTACTC
ACAATTTTTTCTGTTG
Found at i:1012584 original size:20 final size:20
Alignment explanation
Indices: 1012556--1012622 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
1012546 AAATTCAGTA
1012556 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
* *
1012576 TTGCAATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
* *
1012596 TTGCGATAGTCAGATTCGCA
1 TTGCGATAGTCAGAATCGCG
1012616 TTGCGAT
1 TTGCGAT
1012623 TTACGTATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:1012632 original size:20 final size:20
Alignment explanation
Indices: 1012609--1012681 Score: 128
Period size: 20 Copynumber: 3.6 Consensus size: 20
1012599 CGATAGTCAG
1012609 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
1012629 ATTCGTATTACGATTTACGT
1 ATTCGCATTGCGATTTACGT
1012649 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
1012669 ATTCGCATTGCGA
1 ATTCGCATTGCGA
1012682 ATTAGGAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:1012704 original size:21 final size:21
Alignment explanation
Indices: 1012678--1012723 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
1012668 TATTCGCATT
1012678 GCGAATTAGGAAAATCACAAC
1 GCGAATTAGGAAAATCACAAC
* * *
1012699 GCGAATTTGGAAAATCGCAAT
1 GCGAATTAGGAAAATCACAAC
1012720 GCGA
1 GCGA
1012724 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCACAAC
Found at i:1019047 original size:80 final size:80
Alignment explanation
Indices: 1018953--1019108 Score: 312
Period size: 80 Copynumber: 1.9 Consensus size: 80
1018943 ATGTATTTTA
1018953 TTAGTTAGGATCCCTAACTTTAAGAAATTATATTTATTCCTAAAATCAATCACTTACCTGGTATA
1 TTAGTTAGGATCCCTAACTTTAAGAAATTATATTTATTCCTAAAATCAATCACTTACCTGGTATA
1019018 GTAGTTTTCTATAAC
66 GTAGTTTTCTATAAC
1019033 TTAGTTAGGATCCCTAACTTTAAGAAATTATATTTATTCCTAAAATCAATCACTTACCTGGTATA
1 TTAGTTAGGATCCCTAACTTTAAGAAATTATATTTATTCCTAAAATCAATCACTTACCTGGTATA
1019098 GTAGTTTTCTA
66 GTAGTTTTCTA
1019109 AGATAACACA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.40
Consensus pattern (80 bp):
TTAGTTAGGATCCCTAACTTTAAGAAATTATATTTATTCCTAAAATCAATCACTTACCTGGTATA
GTAGTTTTCTATAAC
Found at i:1020659 original size:19 final size:19
Alignment explanation
Indices: 1020612--1020662 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
1020602 ATCCTTCTAC
* *
1020612 TTTATTTATTTTTCTCATTA
1 TTTATTTATTTAT-TCAATA
1020632 -TTA-TTATTTATTCAATA
1 TTTATTTATTTATTCAATA
1020649 TTTATTTATTTATT
1 TTTATTTATTTATT
1020663 TTAATTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 5 0.19
18 10 0.37
19 12 0.44
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTATTTATTTATTCAATA
Found at i:1032016 original size:40 final size:40
Alignment explanation
Indices: 1031961--1032045 Score: 170
Period size: 40 Copynumber: 2.1 Consensus size: 40
1031951 GGCAGGAAAT
1031961 AAGTAAATGCGCTCACAATACATTAGAATTCAGAACATAA
1 AAGTAAATGCGCTCACAATACATTAGAATTCAGAACATAA
1032001 AAGTAAATGCGCTCACAATACATTAGAATTCAGAACATAA
1 AAGTAAATGCGCTCACAATACATTAGAATTCAGAACATAA
1032041 AAGTA
1 AAGTA
1032046 TAATATTTGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.22
Consensus pattern (40 bp):
AAGTAAATGCGCTCACAATACATTAGAATTCAGAACATAA
Found at i:1035195 original size:157 final size:155
Alignment explanation
Indices: 1034801--1035478 Score: 797
Period size: 156 Copynumber: 4.4 Consensus size: 155
1034791 TTAGTCTATG
* * *
1034801 ATTTCATTATTCCTTCAATTCATCATTTATTTTAAGTC-AGTTTTTATCAAATTTGAACCACATG
1 ATTTCATTATTTCTTCAATTCATCCTTTATTTTAAGTCTA-TTTTTACCAAATTTGAACCACATG
* * * *
1034865 CTCCTAAACCATCGTAAAATACATATGTACTTTCAATTC--CTCTTTGACATTACAATTTTT-TT
65 CTCCTAAACCATCGTAGAATACATATGTACTTTCAATTCTTCTTTTTGATAAT-CAATTTTTATT
*
1034927 TTTCAATTTAGTCTCTAATTTTTTATA
129 TTTCAATTTAGTCCCTAATTTTTTATA
* * *
1034954 ATTTCATTATTTCTTCAATTCATTCTTTATTTT-AGTCTATTTTTACCAAATTTGAACTATATGC
1 ATTTCATTATTTCTTCAATTCATCCTTTATTTTAAGTCTATTTTTACCAAATTTGAACCACATGC
* * *
1035018 TCCTAAATCATCGTATAATACATATGTACTTTCAATTCTTCTTTTTGATAATGAATTTTCTATTT
66 TCCTAAACCATCGTAGAATACATATGTACTTTCAATTCTTCTTTTTGATAATCAATTTT-TATTT
* *
1035083 TTTAATTTAGTCCCTCAATTTTATATA
130 TTCAATTTAGTCCCT-AATTTTTTATA
* * *
1035110 ATTTCTTTATTTCTTCAATTCATCCTTTATTTTAAGTCTCTTTTTACCAAATTCGAACCACATGC
1 ATTTCATTATTTCTTCAATTCATCCTTTATTTTAAGTCTATTTTTACCAAATTTGAACCACATGC
* * **
1035175 TCCTAAATCATCGTAGAATACATATG--CTTTCAATTCCTCTTTTCAATAA-CAAATTTTCTATT
66 TCCTAAACCATCGTAGAATACATATGTACTTTCAATTCTTCTTTTTGATAATC-AATTTT-TATT
* * *
1035237 TTCCAATTTAGTCCCTATTTTTTTTTTGTA
129 TTTCAATTTAGTCCCTA---ATTTTTTATA
* *
1035267 ATTTTC-TTATTTCTTCAATTCAT-ATTTAATTTTAAGTC-ATTTTTACCAATTTTGAACCACAT
1 A-TTTCATTATTTCTTCAATTCATCCTTT-ATTTTAAGTCTATTTTTACCAAATTTGAACCACAT
*
1035329 GCTCCTAAACCATCATAGAAT-CAATATGTACTTTCAATTCTT-TTTTT-ATAA-CAA-----A-
64 GCTCCTAAACCATCGTAGAATAC-ATATGTACTTTCAATTCTTCTTTTTGATAATCAATTTTTAT
*
1035384 TTTTCAATTTAGTCCCTTAATTTTTCATA
128 TTTTCAATTTAGTCCC-TAATTTTTTATA
* *
1035413 ATTTCCTTATTTCTTCAATTCATCC-TTATTTTAAGTCTACTTTTACCAAATTTGAACCACATGC
1 ATTTCATTATTTCTTCAATTCATCCTTTATTTTAAGTCTATTTTTACCAAATTTGAACCACATGC
1035477 TC
66 TC
1035479 GTATACCACA
Statistics
Matches: 459, Mismatches: 46, Indels: 47
0.83 0.08 0.09
Matches are distributed among these distances:
145 14 0.03
146 53 0.12
148 15 0.03
149 3 0.01
152 62 0.14
153 37 0.08
154 11 0.02
155 64 0.14
156 94 0.20
157 91 0.20
158 15 0.03
ACGTcount: A:0.28, C:0.19, G:0.05, T:0.48
Consensus pattern (155 bp):
ATTTCATTATTTCTTCAATTCATCCTTTATTTTAAGTCTATTTTTACCAAATTTGAACCACATGC
TCCTAAACCATCGTAGAATACATATGTACTTTCAATTCTTCTTTTTGATAATCAATTTTTATTTT
TCAATTTAGTCCCTAATTTTTTATA
Found at i:1035730 original size:20 final size:21
Alignment explanation
Indices: 1035691--1035741 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
1035681 TTCTTTAAAA
*
1035691 TATAATATTATGAATATATTT
1 TATAATATTAAGAATATATTT
*
1035712 TATAAT-TTAAGATTATATTT
1 TATAATATTAAGAATATATTT
*
1035732 GAT-ATATTAA
1 TATAATATTAA
1035742 ATAACATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.08
20 18 0.69
21 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (21 bp):
TATAATATTAAGAATATATTT
Found at i:1036107 original size:20 final size:21
Alignment explanation
Indices: 1036068--1036118 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
1036058 TTTTTTAAAA
*
1036068 TATAATATTATGAATATATTT
1 TATAATATTAAGAATATATTT
*
1036089 TATAAT-TTAAGATTATATTT
1 TATAATATTAAGAATATATTT
*
1036109 GAT-ATATTAA
1 TATAATATTAA
1036119 ATAACATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.08
20 18 0.69
21 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (21 bp):
TATAATATTAAGAATATATTT
Found at i:1043071 original size:21 final size:21
Alignment explanation
Indices: 1043045--1043086 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
1043035 TATTTGTGAC
1043045 ACACTTTTTTCTGATAGTGTG
1 ACACTTTTTTCTGATAGTGTG
1043066 ACACTTTTTTCTGATAGTGTG
1 ACACTTTTTTCTGATAGTGTG
1043087 GCATACGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.48
Consensus pattern (21 bp):
ACACTTTTTTCTGATAGTGTG
Found at i:1047518 original size:16 final size:16
Alignment explanation
Indices: 1047487--1047519 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1047477 GTATAAAAAT
1047487 ATTTAAATTTTATAAG
1 ATTTAAATTTTATAAG
1047503 ATTTATAATTTT-TAAG
1 ATTTA-AATTTTATAAG
1047519 A
1 A
1047520 ATAATAGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
ATTTAAATTTTATAAG
Found at i:1056419 original size:2 final size:2
Alignment explanation
Indices: 1056392--1056456 Score: 66
Period size: 2 Copynumber: 34.5 Consensus size: 2
1056382 TTTATTTATT
*
1056392 TA TA T- TA TA T- TA TA T- TA T- TT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
1056430 TA TA TA TA TG TA TA TG TA TA GA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1056457 TAATTTTTCT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
1 4 0.08
2 48 0.92
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (2 bp):
TA
Found at i:1056817 original size:9 final size:9
Alignment explanation
Indices: 1056786--1056823 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
1056776 TTTTTTAACA
1056786 TTTTATTCAT
1 TTTTATT-AT
1056796 TTTGT-TTAT
1 TTT-TATTAT
1056805 TTTTATTAT
1 TTTTATTAT
1056814 TTTTATTAT
1 TTTTATTAT
1056823 T
1 T
1056824 ATTTTTTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 1 0.04
9 19 0.73
10 5 0.19
11 1 0.04
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (9 bp):
TTTTATTAT
Found at i:1058682 original size:7 final size:7
Alignment explanation
Indices: 1058665--1058698 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
1058655 GAACATTTCA
1058665 TGCATTTT
1 TGCA-TTT
1058673 TGCATTT
1 TGCATTT
1058680 TGCATTT
1 TGCATTT
1058687 TGCATTT
1 TGCATTT
1058694 TGCAT
1 TGCAT
1058699 CTACATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.85
8 4 0.15
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (7 bp):
TGCATTT
Found at i:1059975 original size:13 final size:14
Alignment explanation
Indices: 1059944--1059994 Score: 63
Period size: 13 Copynumber: 3.8 Consensus size: 14
1059934 AAAAGAGAAA
*
1059944 AAAGAGAAAAAAAGC
1 AAAGAGAAAATAA-C
1059959 AAAGAGAAAATAA-
1 AAAGAGAAAATAAC
1059972 AAAGAGAAAA-AAC
1 AAAGAGAAAATAAC
1059985 AAAG-GAAAAT
1 AAAGAGAAAAT
1059995 TGAAGAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 7 0.21
13 14 0.42
15 12 0.36
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAGAAAATAAC
Found at i:1059988 original size:26 final size:27
Alignment explanation
Indices: 1059942--1059994 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
1059932 CAAAAAGAGA
1059942 AAAAAGAGAAAAAAAGCAAAGAGAAAAT
1 AAAAAGAGAAAAAAAGCAAAG-GAAAAT
1059970 AAAAAGAG-AAAAAA-CAAAGGAAAAT
1 AAAAAGAGAAAAAAAGCAAAGGAAAAT
1059995 TGAAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 5 0.20
27 6 0.24
28 8 0.32
ACGTcount: A:0.75, C:0.04, G:0.17, T:0.04
Consensus pattern (27 bp):
AAAAAGAGAAAAAAAGCAAAGGAAAAT
Found at i:1061761 original size:37 final size:37
Alignment explanation
Indices: 1061694--1061780 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
1061684 ATTGAAAACA
* * *
1061694 TTTCCCTTGAAAC-GAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1061730 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
*
1061767 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
1061781 TAAACATTGA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
36 13 0.28
37 33 0.72
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
Found at i:1061837 original size:102 final size:101
Alignment explanation
Indices: 1061661--1061881 Score: 361
Period size: 102 Copynumber: 2.2 Consensus size: 101
1061651 TTTATCTCGC
* **
1061661 ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAACGAATTTTGTCTCTCTTGAG
1 ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAACAAATTTCATCTCTCTTGAG
*
1061726 ATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAG
66 ACAGTTTCCCTTGAAAC-AAATTTTGTCTCCCTTGAG
*
1061763 ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTCATCTCTCTTGAG
1 ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAACAAATTTCATCTCTCTTGAG
* *
1061828 GCAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAG
66 ACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAG
*
1061864 ACAGTTTCCCTTGAAACA
1 ACAGTTTCTCTTGAAACA
1061882 AATTATTTGA
Statistics
Matches: 111, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
101 35 0.32
102 76 0.68
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (101 bp):
ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAACAAATTTCATCTCTCTTGAG
ACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAG
Found at i:1061843 original size:36 final size:36
Alignment explanation
Indices: 1061796--1061885 Score: 144
Period size: 36 Copynumber: 2.5 Consensus size: 36
1061786 ATTGAAAACA
* *
1061796 TTTCCCTTGAAATAAATTTCATCTCTCTTGAGGCAG
1 TTTCCCTTGAAACAAATTTCATCTCTCTTGAGACAG
**
1061832 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTCATCTCTCTTGAGACAG
1061868 TTTCCCTTGAAACAAATT
1 TTTCCCTTGAAACAAATT
1061886 ATTTGAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTCATCTCTCTTGAGACAG
Found at i:1061914 original size:101 final size:102
Alignment explanation
Indices: 1061661--1061964 Score: 351
Period size: 102 Copynumber: 3.0 Consensus size: 102
1061651 TTTATCTCGC
* * * **
1061661 ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAACGAATTTTGTCTCTCTTGAG
1 ACAGTTTCCCTTGAAACATAAACATTGAAAACATTTCACTTGAAACAAATTTCATCTCTCTTGAG
* *
1061726 ATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAG
66 ACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAG
* * *
1061763 ACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTCATCTCTCTTGAG
1 ACAGTTTCCCTTGAAACATAAACATTGAAAACATTTCACTTGAAACAAATTTCATCTCTCTTGAG
*
1061828 GCAGTTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAG
66 ACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAG
** * ** * * * *
1061864 ACAGTTTCCCTTGAAACA-AATTATTTGAATATGTTTTATTTGAAACAAATTTCATCTCCCTTTA
1 ACAGTTTCCCTTGAAACATAAACA-TTGAAAACATTTCACTTGAAACAAATTTCATCTCTCTTGA
* ** * * *
1061928 GTCAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGA
65 GACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGA
1061965 AACAAATTTC
Statistics
Matches: 176, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
100 3 0.02
101 80 0.45
102 93 0.53
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.39
Consensus pattern (102 bp):
ACAGTTTCCCTTGAAACATAAACATTGAAAACATTTCACTTGAAACAAATTTCATCTCTCTTGAG
ACAGTTTCCCTTGAAACAAAATTTTGTCTCTCTTGAG
Found at i:1062057 original size:123 final size:123
Alignment explanation
Indices: 1061837--1062060 Score: 304
Period size: 123 Copynumber: 1.8 Consensus size: 123
1061827 GGCAGTTTCC
* * * * *
1061837 CTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTATTTGAATATGTTTTA
1 CTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTCGAAACAAAATATTTGAATATATTTCA
** * * * *
1061902 TTTGAAACAAATTTCATCTCCCTTTAGTCAGTTTCTTTTGGAACTAAGTTTTGTCTCT
66 CCTAAAACAAATTTCATCTCCATTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCT
* * *
1061960 CTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTCGAAACAAAATCTTTGAATTTATTTCC
1 CTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTCGAAACAAAATATTTGAATATATTTCA
**
1062025 CCTAAAACAAATTTTGTCTCCATTGAGACAGTTTCT
66 CCTAAAACAAATTTCATCTCCATTGAGACAGTTTCT
1062061 CTTGAAACAC
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
123 85 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.41
Consensus pattern (123 bp):
CTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTCGAAACAAAATATTTGAATATATTTCA
CCTAAAACAAATTTCATCTCCATTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCT
Found at i:1062068 original size:65 final size:67
Alignment explanation
Indices: 1061964--1062109 Score: 190
Period size: 65 Copynumber: 2.2 Consensus size: 67
1061954 GTCTCTCTTG
* * **
1061964 AAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTCG-AA-ACAAAATCTTTGAATTTATTTCCCC
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTCGAAACACAAAATATTCAAATTTATTTCCCC
1062027 TA
66 TA
* *
1062029 AAACAAATTTTGTCTC-CATTGAGACAGTTTCTCTTGAAACACAAAATATTCAAATTTATTTCCC
1 AAACAAATTTTGTCTCTC-TTGAGACAGTTTCCCTCGAAACACAAAATATTCAAATTTATTTCCC
*
1062093 TTA
65 CTA
1062096 AAACAAAATTTTGT
1 AAAC-AAATTTTGT
1062110 TTCCCTTTAG
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
64 1 0.01
65 31 0.44
66 2 0.03
67 27 0.39
68 9 0.13
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (67 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTCGAAACACAAAATATTCAAATTTATTTCCCC
TA
Found at i:1063110 original size:106 final size:105
Alignment explanation
Indices: 1062843--1063110 Score: 306
Period size: 110 Copynumber: 2.5 Consensus size: 105
1062833 CGCGAAGGGG
* * *
1062843 CTTTCCAGTTTCAGAGCTAATTTCAACTTCACA-GCGAGGGATATTGGACTCAAGACAACACAAG
1 CTTTCCAGTTCCAGAGCCAATTTCAACTTCACACG-GA-GGATATTGGACTCGAGACAACACAAG
* *
1062907 CTCAACTTCACAACGAAGGGGTGACTGATTGTCAACAAACAA
64 CTCAACTTCACAACGAAGGGGCGACTGACTGTCAACAAACAA
* * * * * *
1062949 CTTTTCAGTCTCATTCAGAGTCAATTTCAACTTCACAGCGAAGAATATTGAACTCGAGATAACAC
1 CTTTCCAGT-TC---CAGAGCCAATTTCAACTTCACA-CGGAGGATATTGGACTCGAGACAACAC
* * * *
1063014 AAGCTCAACTTCACAGCGAATGGGCGGCTGACTGTCAACAAATAA
61 AAGCTCAACTTCACAACGAAGGGGCGACTGACTGTCAACAAACAA
1063059 -TTTCCCAGTTCCAGAGCCAATTTCAACTTCACGACGGAGGATATTGGACTCG
1 CTTT-CCAGTTCCAGAGCCAATTTCAACTTCAC-ACGGAGGATATTGGACTCG
1063111 GAACAATACT
Statistics
Matches: 134, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
106 43 0.32
107 2 0.01
109 5 0.04
110 82 0.61
111 1 0.01
112 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (105 bp):
CTTTCCAGTTCCAGAGCCAATTTCAACTTCACACGGAGGATATTGGACTCGAGACAACACAAGCT
CAACTTCACAACGAAGGGGCGACTGACTGTCAACAAACAA
Found at i:1064454 original size:14 final size:14
Alignment explanation
Indices: 1064435--1064465 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1064425 GTCTCCTATA
1064435 TATATATTTTTAAT
1 TATATATTTTTAAT
*
1064449 TATATATTTTTATT
1 TATATATTTTTAAT
1064463 TAT
1 TAT
1064466 TTACTATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATATATTTTTAAT
Found at i:1064709 original size:11 final size:10
Alignment explanation
Indices: 1064693--1064723 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
1064683 TAATTTATTT
1064693 TATTTTTTTC
1 TATTTTTTTC
1064703 TATTTTTTTC
1 TATTTTTTTC
1064713 TATTTTTTTC
1 TATTTTTTTC
1064723 T
1 T
1064724 TAATATCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (10 bp):
TATTTTTTTC
Found at i:1064922 original size:21 final size:22
Alignment explanation
Indices: 1064892--1064934 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
1064882 TTTTAACATT
*
1064892 TTATTCATTTTGTTTATTTTTA
1 TTATTCATTTTATTTATTTTTA
*
1064914 TTATT-ATTTTATTTTTTTTTA
1 TTATTCATTTTATTTATTTTTA
1064935 CGTGTTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (22 bp):
TTATTCATTTTATTTATTTTTA
Found at i:1064926 original size:17 final size:19
Alignment explanation
Indices: 1064890--1064929 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
1064880 TTTTTTAACA
*
1064890 TTTTATTCATTTTGTTTAT
1 TTTTATTCATTATGTTTAT
1064909 TTTTATT-ATTAT-TTTAT
1 TTTTATTCATTATGTTTAT
1064926 TTTT
1 TTTT
1064930 TTTTACGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 4 0.20
19 7 0.35
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTTATTCATTATGTTTAT
Found at i:1075912 original size:24 final size:24
Alignment explanation
Indices: 1075885--1075936 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
1075875 AACGGATATA
*
1075885 TCAAAAATCAAAACATAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
** * *
1075909 TCAAGTATCATATCAGAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
1075933 TCAA
1 TCAA
1075937 GAAACAGATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (24 bp):
TCAAAAATCAAAACAGAAATCAGG
Found at i:1076039 original size:48 final size:47
Alignment explanation
Indices: 1075908--1076041 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 47
1075898 CATAAATCAG
* * * *
1075908 GTCAAGTATCATATCAGAAATCAGGTCAAGAAACAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATTCATGTCAA-AATCAGATCAGAATCCAA
* * * *
1075956 GTCAAGTATCAGATCAGAATCCATGTTAGATATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATTCATGTCA-AAATCAGATCAGAATCCAA
1076004 GTCAAGTATCAGATCAGAATTCATGTCGAAAATCAGAT
1 GTCAAGTATCAGATCAGAATTCATGTC-AAAATCAGAT
1076042 AAAATATTCA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 71 0.97
49 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (47 bp):
GTCAAGTATCAGATCAGAATTCATGTCAAAATCAGATCAGAATCCAA
Found at i:1076041 original size:24 final size:24
Alignment explanation
Indices: 1075908--1076030 Score: 151
Period size: 24 Copynumber: 5.1 Consensus size: 24
1075898 CATAAATCAG
* *
1075908 GTCAAGTATCATATCAGAAAT-CAG
1 GTCAAGTATCAGATCAG-AATCCAT
* * *
1075932 GTCAAGAAACAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAT
1075956 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAT
*
1075980 GT-TAGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
*
1076004 GTCAAGTATCAGATCAGAATTCAT
1 GTCAAGTATCAGATCAGAATCCAT
1076028 GTC
1 GTC
1076031 GAAAATCAGA
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
23 5 0.06
24 79 0.92
25 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:1084910 original size:2 final size:2
Alignment explanation
Indices: 1084903--1084948 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
1084893 ATTTAGAAGT
1084903 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1084945 TA TA
1 TA TA
1084949 ATTAATTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1085143 original size:21 final size:21
Alignment explanation
Indices: 1085105--1085181 Score: 129
Period size: 21 Copynumber: 3.7 Consensus size: 21
1085095 AGCAATCAGC
1085105 AATAGTTTATTA-TCCAATGG
1 AATAGTTTATTATTCCAATGG
*
1085125 AATAGTTTTTTATTCCAATGG
1 AATAGTTTATTATTCCAATGG
*
1085146 AATAGTTTTTTATTCCAATGG
1 AATAGTTTATTATTCCAATGG
1085167 AATAGTTTATTATTC
1 AATAGTTTATTATTC
1085182 AAATATATAT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
20 11 0.20
21 43 0.80
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.47
Consensus pattern (21 bp):
AATAGTTTATTATTCCAATGG
Found at i:1085673 original size:51 final size:51
Alignment explanation
Indices: 1085607--1086165 Score: 575
Period size: 51 Copynumber: 10.8 Consensus size: 51
1085597 CTGTTCTTCA
* * * *
1085607 TTCGATATCGTCCTCCCACTGGAACATGACTGAAGACACCCCTTCTACTTG
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* * * * * * * * *
1085658 TTCAATATCCTCCTCCCACTGAAACATGTTTGAAAACATCCCATCTGTTTA
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* * * * *
1085709 TTCAATGTGCTCCTT-CTACTGGAACATGACTGAAGTTTGAAGACACACCC-TCTGCTTG
1 TTCGATATCCT-CTTCCCACTGGAAC---A-T---GTCTGAAGACAC-CCCTTCTGCTTG
* * * *
1085767 TTCGATATCCTCCTCCCACCGGAACATGTCTGAAGACACCCCATATGCTTG
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* *
1085818 TTCGATACCCTCTTCCCACTGGAACATGTCTTAAGACACCCCTTCTGCTTG
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* * * * *
1085869 TTTGAAATCCTCTTCCTACCGGAACATGTCTGAAGACACCCATTCTGCTTG
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* * * * *
1085920 TTCGGTTTCCTCTTCCCACCGGAACATGTCTGAAGACACCCCATATGCTTG
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* * *
1085971 TTCGATACCCTCTTCCCACTGGAACATGTCTTAAGAAACCCCTTCTGCTTG
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* * * *
1086022 TTTGATATCCTCTTCCTACCGGAACATGTCTGAAGACACCCATTCTGCTTG
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* * * *
1086073 TTCGGTTTCCTCTTCCCACCGGAACATGTCTGAAGACACCCCCTCTGCTTG
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
* * * *
1086124 CTCGGTATCTTCTT-CCACTGGAGCATGTCTGAAGACACCCCT
1 TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCT
1086166 GTGCTTCTTT
Statistics
Matches: 421, Mismatches: 76, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
50 28 0.07
51 350 0.83
52 2 0.00
54 2 0.00
55 2 0.00
57 2 0.00
58 32 0.08
59 3 0.01
ACGTcount: A:0.22, C:0.32, G:0.16, T:0.30
Consensus pattern (51 bp):
TTCGATATCCTCTTCCCACTGGAACATGTCTGAAGACACCCCTTCTGCTTG
Found at i:1085954 original size:153 final size:153
Alignment explanation
Indices: 1085746--1086165 Score: 691
Period size: 153 Copynumber: 2.8 Consensus size: 153
1085736 GACTGAAGTT
* * * *
1085746 TGAAGACACACC-CTCTGCTTGTTCGATATCCTCCTCCCACCGGAACATGTCTGAAGACACCCCA
1 TGAAGACAC-CCATTCTGCTTGTTCGGTTTCCTCTTCCCACCGGAACATGTCTGAAGACACCCCA
1085810 TATGCTTGTTCGATACCCTCTTCCCACTGGAACATGTCTTAAGACACCCCTTCTGCTTGTTTGAA
65 TATGCTTGTTCGATACCCTCTTCCCACTGGAACATGTCTTAAGACACCCCTTCTGCTTGTTTGAA
1085875 ATCCTCTTCCTACCGGAACATGTC
130 ATCCTCTTCCTACCGGAACATGTC
1085899 TGAAGACACCCATTCTGCTTGTTCGGTTTCCTCTTCCCACCGGAACATGTCTGAAGACACCCCAT
1 TGAAGACACCCATTCTGCTTGTTCGGTTTCCTCTTCCCACCGGAACATGTCTGAAGACACCCCAT
* *
1085964 ATGCTTGTTCGATACCCTCTTCCCACTGGAACATGTCTTAAGAAACCCCTTCTGCTTGTTTGATA
66 ATGCTTGTTCGATACCCTCTTCCCACTGGAACATGTCTTAAGACACCCCTTCTGCTTGTTTGAAA
1086029 TCCTCTTCCTACCGGAACATGTC
131 TCCTCTTCCTACCGGAACATGTC
*
1086052 TGAAGACACCCATTCTGCTTGTTCGGTTTCCTCTTCCCACCGGAACATGTCTGAAGACACCCCCT
1 TGAAGACACCCATTCTGCTTGTTCGGTTTCCTCTTCCCACCGGAACATGTCTGAAGACACCCCAT
* * * * * * *
1086117 CTGCTTGCTCGGTATCTTCTT-CCACTGGAGCATGTCTGAAGACACCCCT
66 ATGCTTGTTCGATACCCTCTTCCCACTGGAACATGTCTTAAGACACCCCT
1086166 GTGCTTCTTT
Statistics
Matches: 251, Mismatches: 15, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
152 27 0.11
153 224 0.89
ACGTcount: A:0.21, C:0.33, G:0.16, T:0.30
Consensus pattern (153 bp):
TGAAGACACCCATTCTGCTTGTTCGGTTTCCTCTTCCCACCGGAACATGTCTGAAGACACCCCAT
ATGCTTGTTCGATACCCTCTTCCCACTGGAACATGTCTTAAGACACCCCTTCTGCTTGTTTGAAA
TCCTCTTCCTACCGGAACATGTC
Found at i:1090059 original size:210 final size:211
Alignment explanation
Indices: 1089641--1090066 Score: 746
Period size: 213 Copynumber: 2.0 Consensus size: 211
1089631 GCGGTTATTC
*
1089641 ATAGGAGTGTGTACCGCTTCCGACGCCGCCTCTTCTACCGCATCGGCAGCAAGGTATCTTTGAGC
1 ATAGGAGTGTGTACCACTTCCGACGCCGCCTCTTCTACCGCATCGGCAGCAAGGTATCTTTGAGC
1089706 GTAAGTCAATATATGATCTCTGAAGCTAAGTTTCGATGAACAACCGAAACTAGTACCATTGCTGC
66 GTAAGTCAATATATGATCTCTGAAGCTAAGTTTCGATGAACAACCGAAACTAGTACCATTGCTGC
* * *
1089771 CGCTCCGCCTCATCCCTCCGCCACCGTCGCTGTTTCCGCCATTAGAAACACCTCCTGAGCTTCCG
131 AGCTCCGACTCATCCCTCCG-C-CCGTCGCTGTTTCCGCCATTAGAAACACCTCCGGAGCTTCCG
1089836 ATCGATACGGCTCTACTG
194 ATCGATACGGCTCTACTG
* * *
1089854 ATAGGAGTGTGTACCACTTCCGCCGCCGCCTCTTCTCCCGCATCGGCAGCAAGGTATCTTTGAGT
1 ATAGGAGTGTGTACCACTTCCGACGCCGCCTCTTCTACCGCATCGGCAGCAAGGTATCTTTGAGC
*
1089919 GTAAGTCAATATATGATCTCTGAAGCTAAGTTTCGATGAACAACCGAAACTATTACCATTGCTGC
66 GTAAGTCAATATATGATCTCTGAAGCTAAGTTTCGATGAACAACCGAAACTAGTACCATTGCTGC
1089984 AGCTCCGACTCATCCCTCCG-CCGTCGCTGTTTCCGCCATTAGAAACACCTCCGGAGCTTCCGAT
131 AGCTCCGACTCATCCCTCCGCCCGTCGCTGTTTCCGCCATTAGAAACACCTCCGGAGCTTCCGAT
*
1090048 CGATTCGGCTCTACTG
196 CGATACGGCTCTACTG
1090064 ATA
1 ATA
1090067 TTTCTTTTCA
Statistics
Matches: 204, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
210 61 0.30
213 143 0.70
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.26
Consensus pattern (211 bp):
ATAGGAGTGTGTACCACTTCCGACGCCGCCTCTTCTACCGCATCGGCAGCAAGGTATCTTTGAGC
GTAAGTCAATATATGATCTCTGAAGCTAAGTTTCGATGAACAACCGAAACTAGTACCATTGCTGC
AGCTCCGACTCATCCCTCCGCCCGTCGCTGTTTCCGCCATTAGAAACACCTCCGGAGCTTCCGAT
CGATACGGCTCTACTG
Found at i:1091306 original size:182 final size:182
Alignment explanation
Indices: 1090999--1091645 Score: 893
Period size: 182 Copynumber: 3.6 Consensus size: 182
1090989 TACAAATGAA
* * * *
1090999 AAATGTATCGATACATAGCAATATAACAGGTAAAAATATGATAAAACCGGTATC-ATTATGATAA
1 AAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTATCGA-AATGATAA
** * * * * *
1091063 AACCGGTAAACCGTTATCGGATATATTGAAAGTGTTGATAAATTAATATAAATATCGACACTTTT
65 AACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTC
* * ** *
1091128 GTAATTTAAAAGAGAATAAGTTATAGCGTCTAAAAAGTATCGATATTTTATAC
130 GTAATTTAAAAGAGAAGAAGTTATAACACCTAAAAAGTGTCGATATTTTATAC
* * *
1091181 AAATGTATCGATCCATAGCAATATAACAGGTAATAATATGACAAAAAAGGTCTCGAAATGATAAA
1 AAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTATCGAAATGATAAA
* * *
1091246 ACCGGTAAAAAGATATCGGATATATTGAAAGTGTCGATACATTAGTATAAGTATCGACACTTTCG
66 ACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTCG
* *
1091311 TAATTTAAAAGAGAAGAAGTAATAACACCTAAAAAGTGTCAATATTTTATAC
131 TAATTTAAAAGAGAAGAAGTTATAACACCTAAAAAGTGTCGATATTTTATAC
* * *
1091363 AAATGTATCGATCCATAGCAATATAACAGGTAATAATATGATAAAACAGGTGTCGAAATGATAAA
1 AAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTATCGAAATGATAAA
1091428 ACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTCG
66 ACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTCG
* *
1091493 TAATTTAAAAGAGAAGAAATTATAACACCTAAAAAGTGTCGATACTTTATGA-
131 TAATTTAAAAGAGAAGAAGTTATAACACCTAAAAAGTGTCGATATTTTAT-AC
** * * * * *
1091545 AACCGTATCGATCCATAACAATATAATAGGTAAAAATATGACAAAACCGATATCGAAATGACAAA
1 AAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTATCGAAATGATAAA
** * * *
1091610 ACCGGTAAAGCGCTACCGGTTATGTTGAAAGTGTCG
66 ACCGGTAAAAAGATACCGGATATATTGAAAGTGTCG
1091646 GTACTTTAAT
Statistics
Matches: 416, Mismatches: 47, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
182 414 1.00
183 2 0.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.27
Consensus pattern (182 bp):
AAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGACAAAACAGGTATCGAAATGATAAA
ACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTCG
TAATTTAAAAGAGAAGAAGTTATAACACCTAAAAAGTGTCGATATTTTATAC
Found at i:1093851 original size:198 final size:197
Alignment explanation
Indices: 1093376--1093958 Score: 738
Period size: 198 Copynumber: 2.9 Consensus size: 197
1093366 TATTTTCCAA
* * * *
1093376 CCAAAGCAAGTTCACAAATAAGTGTCGATACATTTATATCAAGTGTCGATCCCAAAAACATTGAA
1 CCAAACCAAGTTCACAAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAA
*
1093441 ACCCGTAACTATAATGTAATAGGTCACTTTACAATGTAACCGGTTTAAATTTACCGGTTTTTTGA
66 ACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAACCGGTTTAAATTTACCGG-TTTTT-A
* * * *
1093506 GAAAATATGTCTACA-ATATGTATCGACACTTTATTCATTTGTGTCGATACATGTTGTCAAGAAT
129 AAAAATAGGTCTACATA-ATGTATCGACACTTTATACATTTGTGTCGATAC-TTTTGTCAAGAAT
**
1093570 GTATTT
192 AAATTT
* * * *
1093576 CCAAACCAAGTGCACGAACAAAGTGTCGATACATTTATACCAAGTGTTGATCCCAAAAACATCGA
1 CCAAACCAAGTTCAC-AAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGA
* * * * * * * *
1093641 AACACATAATTATAATGTAATAGGTAACATAACAATGTAACCGGTCTAAATATACCGGTTATTAA
65 AACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAACCGGTTTAAATTTACCGGTTTTTAA
* * * * * * *
1093706 AAAAAAGGTATACATAATGTATCGATACTTTATACATTCGTGTCGACACTTTATGTCCATAATAA
130 AAAATAGGTCTACATAATGTATCGACACTTTATACATTTGTGTCGATACTTT-TGTCAAGAATAA
1093771 ATTTT
194 A-TTT
* * *
1093776 CCAAA-CAAGTTCACAAAAAAGTGTCGATACATTTAGAAAAAGTGTCGATCCTAAAAACATCGAA
1 CCAAACCAAGTTCACAAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAA
* *
1093840 ACCCGTAATTATAATGTAATAGGTCACTTTACAATATAACCGGTTTAAATTTACCGATTTTCTAA
66 ACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAACCGGTTTAAATTTACCGGTTTT-TAA
* *
1093905 GAAAATAGGTCTACATAATGTATCGACACTTTTTAAATTTGTGTCGATACTTTT
130 -AAAATAGGTCTACATAATGTATCGACACTTTATACATTTGTGTCGATACTTTT
1093959 TAAAATTACG
Statistics
Matches: 324, Mismatches: 53, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
198 97 0.30
199 62 0.19
200 71 0.22
201 94 0.29
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (197 bp):
CCAAACCAAGTTCACAAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAA
ACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAACCGGTTTAAATTTACCGGTTTTTAAA
AAATAGGTCTACATAATGTATCGACACTTTATACATTTGTGTCGATACTTTTGTCAAGAATAAAT
TT
Found at i:1095213 original size:30 final size:31
Alignment explanation
Indices: 1095162--1095230 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 31
1095152 TCAAAACTAA
1095162 TTTCAAATGTCCTATTTTTTTCTTTGTACCT
1 TTTCAAATGTCCTATTTTTTTCTTTGTACCT
*
1095193 TTTCAAATGTCCTA-TTTTTTCTTTGTACTT
1 TTTCAAATGTCCTATTTTTTTCTTTGTACCT
1095223 TTTCAAAT
1 TTTCAAAT
1095231 AAAAATATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 23 0.62
31 14 0.38
ACGTcount: A:0.19, C:0.17, G:0.06, T:0.58
Consensus pattern (31 bp):
TTTCAAATGTCCTATTTTTTTCTTTGTACCT
Found at i:1097181 original size:198 final size:198
Alignment explanation
Indices: 1096791--1097266 Score: 545
Period size: 198 Copynumber: 2.4 Consensus size: 198
1096781 ATTTATAACA
* ** * ** *
1096791 AGTATCGATCCCAAAATCAAAGAGACCAATAATTATAATGTAATAGGTAAATTTCCAATGTAACC
1 AGTATCGATCCCAAAAACATCGAAACTGATAATTATAATGTAATAGGTAAATTTACAATGTAACC
* * * * * *
1096856 GGTAAAAATATACCGGGTTCATGAGAGAATAGATCAACATAAAGTATCGACACTTTTTTAATTTG
66 GGTTAAAATATACCGAGTTAATGAGAGAATAGATCAACATAAAGTATCGACACTCTTTAAATATG
* * *
1096921 TGTCGATACATTTTTTCAAAATGAATGGCAAACGAGGTGTACGCATAAAGTGTCGATACATTTGT
131 TGTCGATACATTTTTTCAAAATGAAAGACAAACGAGGTGCACGCATAAAGTGTCGATACA-TT-T
1096986 AAAA-
194 AAAAT
* * *
1096990 AGTATCGATCCTC-GAAACATCGAAA-TCGATAATTATTATGTAACAGGTAAATTTACAATGTAA
1 AGTATCGATCC-CAAAAACATCGAAACT-GATAATTATAATGTAATAGGTAAATTTACAATGTAA
* * * * *
1097053 CCGGTTAAAATATACC-AGTTAATTAGCA-AATAGGTCTACATTATGTATCGACACTCTTTAAAT
64 CCGGTTAAAATATACCGAGTTAATGAG-AGAATAGATCAACATAAAGTATCGACACTCTTTAAAT
*
1097116 ATGTGTCGATAC-TTTTTTCCAAAAT-AAAGCACAAACGAGTTGCACGCATAAAGTGTCGATACA
128 ATGTGTCGATACATTTTTT-CAAAATGAAAG-ACAAACGAGGTGCACGCATAAAGTGTCGATACA
1097179 TTTAAAAT
191 TTTAAAAT
* * * *
1097187 TGTATCGATCCCAAAAACATCGAAACTGAT-ATACATAATGTAATAGGTCAATTTATAATGTAAC
1 AGTATCGATCCCAAAAACATCGAAACTGATAAT-TATAATGTAATAGGTAAATTTACAATGTAAC
* *
1097251 CGGTTTAAATTTACCG
65 CGGTTAAAATATACCG
1097267 GTTTTATGAG
Statistics
Matches: 233, Mismatches: 34, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
196 8 0.03
197 74 0.32
198 84 0.36
199 66 0.28
200 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (198 bp):
AGTATCGATCCCAAAAACATCGAAACTGATAATTATAATGTAATAGGTAAATTTACAATGTAACC
GGTTAAAATATACCGAGTTAATGAGAGAATAGATCAACATAAAGTATCGACACTCTTTAAATATG
TGTCGATACATTTTTTCAAAATGAAAGACAAACGAGGTGCACGCATAAAGTGTCGATACATTTAA
AAT
Found at i:1097335 original size:23 final size:23
Alignment explanation
Indices: 1097281--1097335 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
1097271 TATGAGAAAA
1097281 TATGTTAATATAAGCGCTACCTAT
1 TATGTT-ATATAAGCGCTACCTAT
**
1097305 TACATTATATAAGCGCTACCTTAT
1 TATGTTATATAAGCGCTACC-TAT
1097329 T-TGTTAT
1 TATGTTAT
1097336 TGTACTTGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (23 bp):
TATGTTATATAAGCGCTACCTAT
Found at i:1097422 original size:23 final size:23
Alignment explanation
Indices: 1097372--1097416 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1097362 TGTCTATTTT
* *
1097372 ATTATATAAGCGCTACTTATTAC
1 ATTATATAAGCGCTACCTAATAC
1097395 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
1097417 TGTTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:1097434 original size:87 final size:87
Alignment explanation
Indices: 1097288--1097450 Score: 290
Period size: 87 Copynumber: 1.9 Consensus size: 87
1097278 AAATATGTTA
* *
1097288 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTTATTTGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1097353 TCGGTTAAATGTCTATTTTATT
66 TCGGTTAAATGTCTATTTTATT
* *
1097375 ATATAAGCGCTACTTATTACATTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1097440 TCGGTTAAATG
66 TCGGTTAAATG
1097451 ATATAACATA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
TCGGTTAAATGTCTATTTTATT
Found at i:1097696 original size:21 final size:24
Alignment explanation
Indices: 1097663--1097707 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
1097653 GATTAGGTTG
1097663 ACACATCACATCAAT-ATATTATC
1 ACACATCACATCAATAATATTATC
1097686 ACAC-TCA-ATCAATCAATATTAT
1 ACACATCACATCAAT-AATATTAT
1097708 AAATTTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.30
22 3 0.15
23 11 0.55
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.31
Consensus pattern (24 bp):
ACACATCACATCAATAATATTATC
Found at i:1098020 original size:21 final size:22
Alignment explanation
Indices: 1097986--1098033 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
1097976 AATTAAACGT
*
1097986 TTTAATCAACTAATTAAATATA
1 TTTAATCAACTAATAAAATATA
* *
1098008 TTTATTCAA-TAATAAAATTTA
1 TTTAATCAACTAATAAAATATA
1098029 TTTAA
1 TTTAA
1098034 ATATTTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (22 bp):
TTTAATCAACTAATAAAATATA
Found at i:1102242 original size:3 final size:3
Alignment explanation
Indices: 1102236--1102273 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
1102226 GCTGTCATCA
* *
1102236 TCG TCG TCG TCG TCA TCG TCG TCG TCA TCG TCG TCG TC
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TC
1102274 CTGAGCAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.05, C:0.34, G:0.26, T:0.34
Consensus pattern (3 bp):
TCG
Found at i:1102256 original size:12 final size:12
Alignment explanation
Indices: 1102239--1102273 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
1102229 GTCATCATCG
1102239 TCGTCGTCGTCA
1 TCGTCGTCGTCA
1102251 TCGTCGTCGTCA
1 TCGTCGTCGTCA
1102263 TCGTCGTCGTC
1 TCGTCGTCGTC
1102274 CTGAGCAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.06, C:0.34, G:0.26, T:0.34
Consensus pattern (12 bp):
TCGTCGTCGTCA
Found at i:1102653 original size:18 final size:18
Alignment explanation
Indices: 1102619--1102653 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1102609 GATGGCGGCG
*
1102619 TCATATATGGATGCGGTA
1 TCATATATGGATACGGTA
*
1102637 TCATATATGGTTACGGT
1 TCATATATGGATACGGT
1102654 GGCTGCTGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (18 bp):
TCATATATGGATACGGTA
Found at i:1104296 original size:17 final size:18
Alignment explanation
Indices: 1104253--1104293 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
1104243 GAATTATATT
1104253 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
1104270 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
1104288 ATTAAA
1 AGTAAA
1104294 TACATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:1123975 original size:2 final size:2
Alignment explanation
Indices: 1123968--1124027 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
1123958 GAAATTCAGA
1123968 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1124010 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
1124028 CTAATTCACG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1125090 original size:42 final size:38
Alignment explanation
Indices: 1124994--1125090 Score: 95
Period size: 39 Copynumber: 2.4 Consensus size: 38
1124984 AAAATTTTCT
* * * *
1124994 AATTTATATAAAAATTAAATATTTTATAATTAAAAAAAC
1 AATTTATAT-AAATTTAAATAATATATAATTAAAAAAAA
*
1125033 AATTTATAATTAATTTAAATAATATATAATTATAAAATAAAA
1 AATTTAT-ATAAATTTAAATAATATATAA-T-TAAAA-AAAA
1125075 AATTTTATATAAATTT
1 AA-TTTATATAAATTT
1125091 TTTAATTAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
39 22 0.47
40 3 0.06
41 5 0.11
42 12 0.26
43 5 0.11
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (38 bp):
AATTTATATAAATTTAAATAATATATAATTAAAAAAAA
Found at i:1125325 original size:186 final size:186
Alignment explanation
Indices: 1125011--1125376 Score: 599
Period size: 186 Copynumber: 2.0 Consensus size: 186
1125001 ATAAAAATTA
*
1125011 AATATTTTATAATTAAAAAAACAATTTATAATTAATTTAAATAATATATAATTATAAAATAAAAA
1 AATATTTTATAATTAAAAAAACAATTTACAATTAATTTAAATAATATATAATTATAAAATAAAAA
* *
1125076 ATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTATTGGATCTTAAATT
66 ATTTTATATAAATTTTTTAATTAATTAATATTGACTTAGGTTTAAAAGTTATTGAATCTTAAATT
* * *
1125141 ATTAATTGGGTTTTAAATGGTTTGGACTGAGCTCATATGTTATATATAATTTTTTT
131 ATTAATTGAGTTTTAAATGATTTGGACTGAGCCCATATGTTATATATAATTTTTTT
* * * *
1125197 AATATTTTTTAATTCAGAAAAATAGTTTACAATTAATTTAAATAATATATAATTATAAAAT-AAA
1 AATATTTTATAATT-AAAAAAACAATTTACAATTAATTTAAATAATATATAATTATAAAATAAAA
* *
1125261 AATTTTATGTAAATTTTTTAATTATTTAATATTGACTTAGGTTTAAAAGTTATTGAATCTTAAAT
65 AATTTTATATAAATTTTTTAATTAATTAATATTGACTTAGGTTTAAAAGTTATTGAATCTTAAAT
*
1125326 TATTAATTGAGTTTTAAATGATTTGGGCTGAGCCCATATGTTATATATAAT
130 TATTAATTGAGTTTTAAATGATTTGGACTGAGCCCATATGTTATATATAAT
1125377 ATATTTAAAA
Statistics
Matches: 166, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
186 124 0.75
187 42 0.25
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.46
Consensus pattern (186 bp):
AATATTTTATAATTAAAAAAACAATTTACAATTAATTTAAATAATATATAATTATAAAATAAAAA
ATTTTATATAAATTTTTTAATTAATTAATATTGACTTAGGTTTAAAAGTTATTGAATCTTAAATT
ATTAATTGAGTTTTAAATGATTTGGACTGAGCCCATATGTTATATATAATTTTTTT
Found at i:1128641 original size:182 final size:182
Alignment explanation
Indices: 1128328--1128733 Score: 654
Period size: 182 Copynumber: 2.2 Consensus size: 182
1128318 ACTTTTTTAC
* * *
1128328 TACCGGTTTTGTCATTTCGAGATCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATTAA
1 TACCGGTTTTGTCATTTCGAGATCGGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCAA
* *
1128393 TACATTTTTATAAAGTATCGACACTTTATTGTCGCTATAACTTCTTTTCTTTTAAATTCTAAAAG
66 TACATTTTTATAAAGTATCGACACTTTATTGTCGCTATAACTTCTTCTCTTTTAAATTCCAAAAG
* *
1128458 TGTCGATACTTATAATAAAGTATCGACACTATCAACATATTCGGTAGCTCTT
131 TGTCGATACTTATAATAAAGTATCGACACTATCAACATATTCGATAGCGCTT
* *
1128510 TACCGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGA
1 TACCGGTTTTGTCATTTCGAGATCGGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCAA
*
1128575 TATATTTTTATAAAGTATCGACACTTTATTAG-CGCTATAACTTCTTCTCTTTTAAATTCCAAAA
66 TACATTTTTATAAAGTATCGACACTTTATT-GTCGCTATAACTTCTTCTCTTTTAAATTCCAAAA
*
1128639 GTGTCGATACTTATAATAAAGTATTGACACTATCAACATATTCGATAGCGCTT
130 GTGTCGATACTTATAATAAAGTATCGACACTATCAACATATTCGATAGCGCTT
* * **
1128692 TATCTGTTTTGTCATTTATAGATCGGTTTTGTCAT-TTTTTAC
1 TACCGGTTTTGTCATTTCGAGATCGGTTTTGTCATATTTTTAC
1128734 TTTTTTAAGT
Statistics
Matches: 207, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
181 7 0.03
182 199 0.96
183 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (182 bp):
TACCGGTTTTGTCATTTCGAGATCGGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCAA
TACATTTTTATAAAGTATCGACACTTTATTGTCGCTATAACTTCTTCTCTTTTAAATTCCAAAAG
TGTCGATACTTATAATAAAGTATCGACACTATCAACATATTCGATAGCGCTT
Found at i:1130246 original size:29 final size:30
Alignment explanation
Indices: 1130186--1130252 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 30
1130176 TTAATTCTTA
*
1130186 AGCTTCAACTGTAAATACCCTAACCCTTTT
1 AGCTTCAACTGTAAATACCCTAACCCATTT
*
1130216 AGCTTCAACTGTAAATA-CCTAACTCATTT
1 AGCTTCAACTGTAAATACCCTAACCCATTT
1130245 AGCTTCAA
1 AGCTTCAA
1130253 AACCATCTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 18 0.51
30 17 0.49
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (30 bp):
AGCTTCAACTGTAAATACCCTAACCCATTT
Found at i:1131666 original size:40 final size:40
Alignment explanation
Indices: 1131622--1131705 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
1131612 GAATTGCACT
1131622 AAACATCTCCAAACTATGCCCAGATTCTAATTGAGTTATC
1 AAACATCTCCAAACTATGCCCAGATTCTAATTGAGTTATC
1131662 AAACATCTCCAAACTATGCCCAGATTCTAATTGAGTTATC
1 AAACATCTCCAAACTATGCCCAGATTCTAATTGAGTTATC
1131702 AAAC
1 AAAC
1131706 TATGTCCATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.29
Consensus pattern (40 bp):
AAACATCTCCAAACTATGCCCAGATTCTAATTGAGTTATC
Found at i:1132873 original size:21 final size:21
Alignment explanation
Indices: 1132849--1132907 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
1132839 TGATTTATTA
**
1132849 TTATGGATTTTATTTTTCTTG
1 TTATGGATTTTAAGTTTCTTG
*
1132870 TTATGGATTTTAAGTTTGTTG
1 TTATGGATTTTAAGTTTCTTG
* *
1132891 TTATGGATGTCAAGTTT
1 TTATGGATTTTAAGTTT
1132908 ATTGGAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.03, G:0.20, T:0.58
Consensus pattern (21 bp):
TTATGGATTTTAAGTTTCTTG
Found at i:1133101 original size:43 final size:43
Alignment explanation
Indices: 1133019--1133107 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
1133009 GAGGTAATTA
* * *
1133019 GCGGCGTTTGTATCTTAAAACGTCGCTATAGATATGATCTTTT
1 GCGGCGTTTGTATCTAAAAACGCCGCTATAGACATGATCTTTT
*
1133062 GCGGCGTTTGT-TCTAAAAAACGCCGCTATATACCA-GATCTTTT
1 GCGGCGTTTGTATCT-AAAAACGCCGCTATAGA-CATGATCTTTT
1133105 GCG
1 GCG
1133108 ATGTTTGTGG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
42 3 0.08
43 36 0.90
44 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (43 bp):
GCGGCGTTTGTATCTAAAAACGCCGCTATAGACATGATCTTTT
Found at i:1133150 original size:43 final size:43
Alignment explanation
Indices: 1133110--1133303 Score: 271
Period size: 43 Copynumber: 4.5 Consensus size: 43
1133100 CTTTTGCGAT
*
1133110 GTTTGTGGGAAAAACGCCGCTAAATCTCAAGACCTATTGCGGC
1 GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
* * * *
1133153 GTTTTTGGGGAAAACGCTGCTAAATCTCAACATCTATTGCGGC
1 GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
*
1133196 GTTTGTGGGAAAAACTCCGCTAAATCTCAACACCTATTGCGGC
1 GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
* * *
1133239 GTTTGTTGAAAAAACGCCGCTAAATATCAACACCTATTGCGGC
1 GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
* ** *
1133282 GTTTATTAGACAAACGCCGCTA
1 GTTTGTGGGAAAAACGCCGCTA
1133304 TATATCGTTA
Statistics
Matches: 133, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 133 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (43 bp):
GTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTATTGCGGC
Found at i:1133156 original size:86 final size:86
Alignment explanation
Indices: 1133060--1133303 Score: 278
Period size: 86 Copynumber: 2.8 Consensus size: 86
1133050 ATATGATCTT
* * * * *
1133060 TTGCGGCGTTTGTTCTAAAAAACGCCGCTATATAC-C-AGATCTTTTGCGATGTTTGTGGGAAAA
1 TTGCGGCGTTTGTT-GAAAAAACGCCGCTAAAT-CTCAACATCTATTGCGACGTTTGTGGGAAAA
*
1133123 ACGCCGCTAAATCTCAAGACCTA
64 ACGCCGCTAAATCTCAACACCTA
** * *
1133146 TTGCGGCGTTT-TTGGGGAAAACGCTGCTAAATCTCAACATCTATTGCGGCGTTTGTGGGAAAAA
1 TTGCGGCGTTTGTT-GAAAAAACGCCGCTAAATCTCAACATCTATTGCGACGTTTGTGGGAAAAA
*
1133210 CTCCGCTAAATCTCAACACCTA
65 CGCCGCTAAATCTCAACACCTA
* * * * ** *
1133232 TTGCGGCGTTTGTTGAAAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTATTAGACAAAC
1 TTGCGGCGTTTGTTGAAAAAACGCCGCTAAATCTCAACATCTATTGCGACGTTTGTGGGAAAAAC
1133297 GCCGCTA
66 GCCGCTA
1133304 TATATCGTTA
Statistics
Matches: 133, Mismatches: 22, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
84 1 0.01
85 16 0.12
86 114 0.86
87 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (86 bp):
TTGCGGCGTTTGTTGAAAAAACGCCGCTAAATCTCAACATCTATTGCGACGTTTGTGGGAAAAAC
GCCGCTAAATCTCAACACCTA
Found at i:1133317 original size:43 final size:43
Alignment explanation
Indices: 1133119--1133324 Score: 218
Period size: 43 Copynumber: 4.8 Consensus size: 43
1133109 TGTTTGTGGG
* * *
1133119 AAAAACGCCGCTAAATCTCAAGACCTATTGCGGCGTTT-TTGGG
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTATT-GA
* * * * * * *
1133162 GAAAACGCTGCTAAATCTCAACATCTATTGCGGCGTTTGTGGG
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTATTGA
* * *
1133205 AAAAACTCCGCTAAATCTCAACACCTATTGCGGCGTTTGTTGA
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTATTGA
1133248 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTATT-A
1 AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTATTGA
* * ***
1133290 GACAAACGCCGCTATATATCGTTACCTATTGCGGC
1 -AAAAACGCCGCTAAATATCAACACCTATTGCGGC
1133325 ATTTTTTGTT
Statistics
Matches: 142, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 140 0.99
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (43 bp):
AAAAACGCCGCTAAATATCAACACCTATTGCGGCGTTTATTGA
Found at i:1136083 original size:2 final size:2
Alignment explanation
Indices: 1136078--1136105 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1136068 AATTGATAAC
1136078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1136106 TAATTTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1136792 original size:21 final size:21
Alignment explanation
Indices: 1136759--1136844 Score: 75
Period size: 21 Copynumber: 4.1 Consensus size: 21
1136749 ACTTCGACTA
*
1136759 TCGCATTGTGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* * *
1136780 TCGCGTTGCGA-TTTACATAT
1 TCGCATTGCGATTTTCCAAAT
** ** *
1136800 TCGCATTGCGATAGTCGGAGT
1 TCGCATTGCGATTTTCCAAAT
*
1136821 TCGCGTTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
1136842 TCG
1 TCG
1136845 TTGCGGTTTA
Statistics
Matches: 46, Mismatches: 18, Indels: 2
0.70 0.27 0.03
Matches are distributed among these distances:
20 17 0.37
21 29 0.63
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:1137944 original size:20 final size:20
Alignment explanation
Indices: 1137919--1137964 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
1137909 GAAAACTGAT
*
1137919 TTGCGATACTAGAGATCACG
1 TTGCGATACTAGAGATCACA
* *
1137939 TTGCGA-ATTAGAGATCGCA
1 TTGCGATACTAGAGATCACA
1137958 TTGCGAT
1 TTGCGAT
1137965 TTTGTTGGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (20 bp):
TTGCGATACTAGAGATCACA
Found at i:1141672 original size:18 final size:19
Alignment explanation
Indices: 1141649--1141684 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1141639 ATAAATTATA
1141649 TATTTAT-ACTTTTTAATT
1 TATTTATGACTTTTTAATT
*
1141667 TATTTATGATTTTTTAAT
1 TATTTATGACTTTTTAAT
1141685 ATTTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (19 bp):
TATTTATGACTTTTTAATT
Found at i:1142048 original size:23 final size:24
Alignment explanation
Indices: 1142020--1142068 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
1142010 ATCAAAAATT
* *
1142020 TAAAAAATCATAAATATTTA-ATA
1 TAAAAAATAATAAATATATATATA
*
1142043 TAAAAAATAATATATATATATATA
1 TAAAAAATAATAAATATATATATA
1142067 TA
1 TA
1142069 TATATATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
TAAAAAATAATAAATATATATATA
Found at i:1142129 original size:39 final size:39
Alignment explanation
Indices: 1142075--1142161 Score: 174
Period size: 39 Copynumber: 2.2 Consensus size: 39
1142065 TATATATATA
1142075 TTATGGTGATAAGATTTAAAAATTTAAGAACTTTGAAGG
1 TTATGGTGATAAGATTTAAAAATTTAAGAACTTTGAAGG
1142114 TTATGGTGATAAGATTTAAAAATTTAAGAACTTTGAAGG
1 TTATGGTGATAAGATTTAAAAATTTAAGAACTTTGAAGG
1142153 TTATGGTGA
1 TTATGGTGA
1142162 AATAATTTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.39, C:0.02, G:0.22, T:0.37
Consensus pattern (39 bp):
TTATGGTGATAAGATTTAAAAATTTAAGAACTTTGAAGG
Found at i:1142215 original size:20 final size:20
Alignment explanation
Indices: 1142179--1142218 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
1142169 TGAGAATTAT
*
1142179 AAATAAATATTTAATATAAA
1 AAATAAATATATAATATAAA
1142199 AAATAATATATATATATATA
1 AAATAA-ATATATA-ATATA
1142219 TAATAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 6 0.35
22 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATAAATATATAATATAAA
Found at i:1145470 original size:25 final size:25
Alignment explanation
Indices: 1145407--1145466 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
1145397 ATATTTTATA
* *
1145407 TATATTATCTTTAA-AAATATTTGTT
1 TATATTA-ATTTAATAAATATATGTT
1145432 TATATTAATTTAATAAATATAT-TT
1 TATATTAATTTAATAAATATATGTT
*
1145456 TATTTTAATTT
1 TATATTAATTT
1145467 TAATTTAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.55
25 14 0.45
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
TATATTAATTTAATAAATATATGTT
Found at i:1145800 original size:31 final size:31
Alignment explanation
Indices: 1145765--1145829 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
1145755 TGACCACGTC
** *
1145765 TTAATTAAATTGAAACGAAATTGACTATATA
1 TTAATTAAATAAAAACGAAAGTGACTATATA
*
1145796 TTAATTAAATAAAAACGAAAGTGATTATATA
1 TTAATTAAATAAAAACGAAAGTGACTATATA
1145827 TTA
1 TTA
1145830 TGTTTTTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (31 bp):
TTAATTAAATAAAAACGAAAGTGACTATATA
Found at i:1148011 original size:20 final size:20
Alignment explanation
Indices: 1147983--1148022 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
1147973 AATTGATATG
* *
1147983 AATCTTTGACCAACAAAAAT
1 AATCGTTGACAAACAAAAAT
*
1148003 AATCGTTGATAAACAAAAAT
1 AATCGTTGACAAACAAAAAT
1148023 TCATTAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (20 bp):
AATCGTTGACAAACAAAAAT
Found at i:1149526 original size:21 final size:21
Alignment explanation
Indices: 1149475--1149527 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
1149465 ATTATGACTA
*
1149475 TCGCAAAGCGATTTTACAATT
1 TCGCAATGCGATTTTACAATT
** *
1149496 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-ACAATT
1149517 TCGCAATGCGA
1 TCGCAATGCGA
1149528 ATTTGGAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (21 bp):
TCGCAATGCGATTTTACAATT
Found at i:1149583 original size:21 final size:21
Alignment explanation
Indices: 1149557--1149611 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
1149547 GATACTGACT
1149557 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATAATACAAA
1149578 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATAATACAAA
1149599 ATCGCAACGCGAT
1 ATCGCAACGCGAT
1149612 TCTGACTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.44, C:0.25, G:0.16, T:0.15
Consensus pattern (21 bp):
ATCGCAACGCGATAATACAAA
Found at i:1149643 original size:20 final size:20
Alignment explanation
Indices: 1149596--1149645 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
1149586 GCGATAATAC
*
1149596 AAAATCGCAACGCGATTCTG
1 AAAATCGCAACGAGATTCTG
***
1149616 ACTTTCGCAACGAGATTCTG
1 AAAATCGCAACGAGATTCTG
1149636 AAAATCGCAA
1 AAAATCGCAA
1149646 TCATCTTCAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (20 bp):
AAAATCGCAACGAGATTCTG
Found at i:1149951 original size:34 final size:34
Alignment explanation
Indices: 1149913--1149992 Score: 133
Period size: 34 Copynumber: 2.4 Consensus size: 34
1149903 GAAATGAAAA
*
1149913 TCGCGTTGCGATTCTCTCGTTGCGATAGCCATTT
1 TCGCGTTGCGATTCTCTCGTTGCGATAGCCAGTT
*
1149947 TCGCGTTGCGATTCTCTCGTTGCGATAGTCAGTT
1 TCGCGTTGCGATTCTCTCGTTGCGATAGCCAGTT
*
1149981 TCGTGTTGCGAT
1 TCGCGTTGCGAT
1149993 AGTCTGTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.11, C:0.24, G:0.26, T:0.39
Consensus pattern (34 bp):
TCGCGTTGCGATTCTCTCGTTGCGATAGCCAGTT
Found at i:1150448 original size:14 final size:14
Alignment explanation
Indices: 1150429--1150485 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
1150419 TCATTTCGCA
1150429 TTGCGATTTTGTCG
1 TTGCGATTTTGTCG
*
1150443 TTGCGATTTTCATTTCG
1 TTGCGA-TTT--TGTCG
1150460 CATTGCGATTTTGTCG
1 --TTGCGATTTTGTCG
1150476 TTGCGATTTT
1 TTGCGATTTT
1150486 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 16 0.44
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.17
ACGTcount: A:0.11, C:0.16, G:0.23, T:0.51
Consensus pattern (14 bp):
TTGCGATTTTGTCG
Found at i:1150456 original size:33 final size:33
Alignment explanation
Indices: 1150417--1150501 Score: 170
Period size: 33 Copynumber: 2.6 Consensus size: 33
1150407 ATAACGCGGA
1150417 TTTCATTTCGCATTGCGATTTTGTCGTTGCGAT
1 TTTCATTTCGCATTGCGATTTTGTCGTTGCGAT
1150450 TTTCATTTCGCATTGCGATTTTGTCGTTGCGAT
1 TTTCATTTCGCATTGCGATTTTGTCGTTGCGAT
1150483 TTTCATTTCGCATTGCGAT
1 TTTCATTTCGCATTGCGAT
1150502 AGCCATTTCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.13, C:0.19, G:0.20, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCATTGCGATTTTGTCGTTGCGAT
Found at i:1150508 original size:19 final size:20
Alignment explanation
Indices: 1150486--1150529 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1150476 TTGCGATTTT
*
1150486 CATTT-CGCATTGCGATAGC
1 CATTTCCGCATTACGATAGC
*
1150505 CATTTCCGCATTACGATAGT
1 CATTTCCGCATTACGATAGC
1150525 CATTT
1 CATTT
1150530 TCGTGTTGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (20 bp):
CATTTCCGCATTACGATAGC
Found at i:1151075 original size:18 final size:18
Alignment explanation
Indices: 1151052--1151099 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
1151042 CGGGTCGATC
1151052 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
* *
1151070 AGGTGATAGCTATGGGTG
1 AGGTGATGGCTCTGGGTG
1151088 AGGTGATGGCTC
1 AGGTGATGGCTC
1151100 CCGAAGTGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.17, C:0.10, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:1153064 original size:20 final size:20
Alignment explanation
Indices: 1152950--1153063 Score: 140
Period size: 20 Copynumber: 5.7 Consensus size: 20
1152940 GATTATGTAT
*
1152950 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
1152970 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
1152990 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* ** *
1153010 TATCTCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
*
1153031 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
1153051 TATCGCGTTGCGA
1 TATCGCGTTGCGA
1153064 TTTTCCAAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 3 0.04
20 63 0.78
21 13 0.16
22 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:1153067 original size:41 final size:41
Alignment explanation
Indices: 1152930--1153065 Score: 186
Period size: 41 Copynumber: 3.3 Consensus size: 41
1152920 CGCTTTGAAA
* *
1152930 ATCGCATTGCGATTATGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
* *
1152971 ATCGCGTTGCGA--AAGTAAGTATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATTATGT-ATTATCGCGTTGCGAAAGTCAGT
* * *
1153011 ATCTCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCGTTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
1153052 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
1153066 TTCCAAATTC
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.04
40 32 0.39
41 45 0.55
42 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.35
Consensus pattern (41 bp):
ATCGCGTTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
Found at i:1153082 original size:21 final size:21
Alignment explanation
Indices: 1153053--1153125 Score: 103
Period size: 21 Copynumber: 3.5 Consensus size: 21
1153043 ATAGTCAGTA
*
1153053 TCGCGTTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
1153074 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* **
1153095 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCAAAT
1153115 TCGCATTGCGA
1 TCGCATTGCGA
1153126 ATTGGAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
20 17 0.35
21 31 0.65
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:1153085 original size:41 final size:40
Alignment explanation
Indices: 1152950--1153084 Score: 146
Period size: 41 Copynumber: 3.3 Consensus size: 40
1152940 GATTATGTAT
* *** *
1152950 TATCTCGTTGCGAAAGTCAGTATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTTAAA
* * *
1152990 TATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTAT
1 TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTT-AAA
*
1153031 TATCGCGTTGCGATAGTCAGTATCGCGTTGCGATTTTCCAAA
1 TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTT--AAA
*
1153073 T-TCGCATTGCGA
1 TATCGCGTTGCGA
1153085 TTTTCCAAAT
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 32 0.40
41 46 0.57
42 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (40 bp):
TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTTAAA
Found at i:1153167 original size:21 final size:22
Alignment explanation
Indices: 1153115--1153167 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
1153105 ATTTACTTAT
*
1153115 TCGCATTGCG-AATTGGAAAAA
1 TCGCATTGCGAAATTAGAAAAA
**
1153136 TCGCAACGCGAAATTAG-AAAA
1 TCGCATTGCGAAATTAGAAAAA
1153157 TCGCATTGCGA
1 TCGCATTGCGA
1153168 TAGTCATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTAGAAAAA
Found at i:1164820 original size:21 final size:21
Alignment explanation
Indices: 1164796--1164855 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
1164786 AACTTTGAAA
1164796 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
1164817 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
1164831 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
1164852 AAAT
1 AAAT
1164856 ATTTCTTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
14 5 0.17
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 9 0.30
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:1164902 original size:36 final size:36
Alignment explanation
Indices: 1164788--1164907 Score: 172
Period size: 35 Copynumber: 3.3 Consensus size: 36
1164778 TGGTAACCAA
1164788 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
1164825 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATATTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* *
1164860 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
*
1164897 -GTTGAAAAATG
1 CTTTGAAAAATG
1164908 ATAATGGGAT
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
35 35 0.46
36 14 0.18
37 27 0.36
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:1164907 original size:72 final size:69
Alignment explanation
Indices: 1164761--1164904 Score: 184
Period size: 72 Copynumber: 2.1 Consensus size: 69
1164751 TGAAATTATT
*
1164761 AAAATGGTTTTCAAGTTTGGTAACCAACTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTTC
1 AAAATGGTTTTCAAGTTTGGTAAACAACTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTTC
*
1164826 TTTG
66 GTTG
* * * *
1164830 AAAATGGTTTTCAAAGTTTGGTAAATATTTCTTTG-AAAAATAGTTTTTCAAAGTTTGGTAGATG
1 AAAATGGTTTTC-AAGTTTGGTAAACA--ACTTTGAAAAAAT-GGTTTTCAAAGTTTGGTAAATG
1164894 TTT-GTTG
62 TTTCGTTG
1164901 AAAA
1 AAAA
1164905 ATGATAATGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
69 12 0.18
70 12 0.18
71 13 0.20
72 28 0.43
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (69 bp):
AAAATGGTTTTCAAGTTTGGTAAACAACTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTTC
GTTG
Found at i:1169009 original size:52 final size:53
Alignment explanation
Indices: 1168879--1169015 Score: 145
Period size: 52 Copynumber: 2.6 Consensus size: 53
1168869 ACATTGACTA
* * *
1168879 TACTATGCTAGTAACTTGTATCACACAATATC-GATACTAGCCTCACTGGCTC
1 TACTATGCTAGTAACTAGTATCACACAACATCAGATACTAACCTCACTGGCTC
* * * * *
1168931 TAATATGTTAGTATA-TAATATAACACAACATCAGATACTAACCTTACTGGCT-
1 TACTATGCTAGTA-ACTAGTATCACACAACATCAGATACTAACCTCACTGGCTC
* * *
1168983 TACTATACTAGTACCTGGTATCACACAACATCA
1 TACTATGCTAGTAACTAGTATCACACAACATCA
1169016 AATATTAGCC
Statistics
Matches: 67, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
52 49 0.73
53 18 0.27
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (53 bp):
TACTATGCTAGTAACTAGTATCACACAACATCAGATACTAACCTCACTGGCTC
Found at i:1173118 original size:10 final size:10
Alignment explanation
Indices: 1173089--1173157 Score: 72
Period size: 10 Copynumber: 7.1 Consensus size: 10
1173079 GCTGCTGGAA
1173089 AACCGGTTTG
1 AACCGGTTTG
*
1173099 -ACCAGTTTTG
1 AACC-GGTTTG
1173109 AACCGGTTTG
1 AACCGGTTTG
*
1173119 -ACCGGTCTG
1 AACCGGTTTG
1173128 AACCGGTTTG
1 AACCGGTTTG
*
1173138 -ACCGGTCTG
1 AACCGGTTTG
*
1173147 AACCGGGTTG
1 AACCGGTTTG
1173157 A
1 A
1173158 CCCGACCCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
9 19 0.40
10 26 0.54
11 3 0.06
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (10 bp):
AACCGGTTTG
Found at i:1173131 original size:19 final size:19
Alignment explanation
Indices: 1173089--1173159 Score: 106
Period size: 19 Copynumber: 3.7 Consensus size: 19
1173079 GCTGCTGGAA
* *
1173089 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACC-GGTCTG
1173109 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
1173128 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGACCGGTCTG
*
1173147 AACCGGGTTGACC
1 AACCGGTTTGACC
1173160 CGACCCGACT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
19 35 0.73
20 13 0.27
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (19 bp):
AACCGGTTTGACCGGTCTG
Found at i:1173175 original size:17 final size:17
Alignment explanation
Indices: 1173153--1173227 Score: 123
Period size: 17 Copynumber: 4.4 Consensus size: 17
1173143 TCTGAACCGG
1173153 GTTGACCCGACCCGACT
1 GTTGACCCGACCCGACT
1173170 GTTGACCCGACCCGACT
1 GTTGACCCGACCCGACT
* *
1173187 GTTGACCTGACCCGAAT
1 GTTGACCCGACCCGACT
*
1173204 GTTGACCCGACCCGACC
1 GTTGACCCGACCCGACT
1173221 GTTGACC
1 GTTGACC
1173228 GTTAACTGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 53 1.00
ACGTcount: A:0.19, C:0.39, G:0.24, T:0.19
Consensus pattern (17 bp):
GTTGACCCGACCCGACT
Found at i:1174155 original size:31 final size:32
Alignment explanation
Indices: 1174111--1174183 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 32
1174101 TGTGACTCTT
* *
1174111 AGGTAGGCTCTGCGGCCCTGAGAT-CATTCTC
1 AGGTAGGCCCTGCGGCCCTAAGATGCATTCTC
* * *
1174142 GGGTAGGCCCTGCGGCCCTAAGATGTATTCTT
1 AGGTAGGCCCTGCGGCCCTAAGATGCATTCTC
1174174 AGGTAGGCCC
1 AGGTAGGCCC
1174184 CACGGCCCCG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
31 21 0.60
32 14 0.40
ACGTcount: A:0.16, C:0.27, G:0.32, T:0.25
Consensus pattern (32 bp):
AGGTAGGCCCTGCGGCCCTAAGATGCATTCTC
Found at i:1174180 original size:63 final size:63
Alignment explanation
Indices: 1174107--1174230 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
1174097 CTAATGTGAC
* ** * *
1174107 TCTTAGGTAGGCTCTGCGGCCCTGAGATC-ATTCTCGGGTAGGCCCTGC-GGCCCTAAGATGTAT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTA-TCTCGGGTAGGCCCT-CAGGCCCTAAGATGTAT
* *
1174170 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTTGGGTAGGCTCTCAGGCCCTAAGATGT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGT
1174231 TCCCTTAGGG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 1 0.02
63 50 0.96
64 1 0.02
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.26
Consensus pattern (63 bp):
TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGTAT
Found at i:1180508 original size:17 final size:17
Alignment explanation
Indices: 1180486--1180542 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 17
1180476 TCTAAATCGG
1180486 GTTGACCCGACCCGACT
1 GTTGACCCGACCCGACT
*
1180503 GTTGACCCGACCCGAAT
1 GTTGACCCGACCCGACT
* *
1180520 TTTGACCCGACCCGACC
1 GTTGACCCGACCCGACT
1180537 GTTGAC
1 GTTGAC
1180543 TGTGACCGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.19, C:0.39, G:0.23, T:0.19
Consensus pattern (17 bp):
GTTGACCCGACCCGACT
Found at i:1183831 original size:24 final size:24
Alignment explanation
Indices: 1183804--1183922 Score: 168
Period size: 24 Copynumber: 5.0 Consensus size: 24
1183794 TTCGATTTGA
1183804 ATTCTGATATGATACTTGACATGG
1 ATTCTGATATGATACTTGACATGG
* *
1183828 ATTCTGATCTGATA-TATGACATAG
1 ATTCTGATATGATACT-TGACATGG
*
1183852 ATTCTGATATGATACTTGACTTGG
1 ATTCTGATATGATACTTGACATGG
* *
1183876 ATTCTGATCTGATACTTGACCTGG
1 ATTCTGATATGATACTTGACATGG
*
1183900 ATTTTGATATGATACTTGACATG
1 ATTCTGATATGATACTTGACATG
1183923 ATTTATGTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
23 1 0.01
24 81 0.98
25 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.39
Consensus pattern (24 bp):
ATTCTGATATGATACTTGACATGG
Found at i:1186564 original size:18 final size:18
Alignment explanation
Indices: 1186524--1186564 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
1186514 TATGGCTATC
1186524 TAAAAACAAGTTCCAACA
1 TAAAAACAAGTTCCAACA
* * *
1186542 GAAAAACAAGTTCTAACT
1 TAAAAACAAGTTCCAACA
1186560 TAAAA
1 TAAAA
1186565 CATGGGTATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.56, C:0.17, G:0.07, T:0.20
Consensus pattern (18 bp):
TAAAAACAAGTTCCAACA
Found at i:1186611 original size:18 final size:18
Alignment explanation
Indices: 1186588--1186632 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
1186578 AACAAGTTGT
1186588 AACCTAAAATATGATTGC
1 AACCTAAAATATGATTGC
*
1186606 AACCTAAAATATGGTTGC
1 AACCTAAAATATGATTGC
1186624 AACCTAAAA
1 AACCTAAAA
1186633 ACAAGTTCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.47, C:0.18, G:0.11, T:0.24
Consensus pattern (18 bp):
AACCTAAAATATGATTGC
Found at i:1186690 original size:18 final size:18
Alignment explanation
Indices: 1186656--1186902 Score: 102
Period size: 18 Copynumber: 14.3 Consensus size: 18
1186646 ATATGGGTAT
*
1186656 CTAAAATA-AGTTTCAAC
1 CTAAAATATAGTTCCAAC
*
1186673 CTAAAATATAGTTGCAAC
1 CTAAAATATAGTTCCAAC
*
1186691 CTAAAA-ATAATTTCCAAC
1 CTAAAATAT-AGTTCCAAC
* * * *
1186709 TTAAAATATGGGT---AT
1 CTAAAATATAGTTCCAAC
*
1186724 CTAAAATA-AGTTCCCAC
1 CTAAAATATAGTTCCAAC
* *
1186741 CTAAAATATGGTTACAAC
1 CTAAAATATAGTTCCAAC
*
1186759 CTAAAA-ACAAGTTCCAA-
1 CTAAAATA-TAGTTCCAAC
*
1186776 CTCAAAATATGAG-T---AT
1 CT-AAAATAT-AGTTCCAAC
*
1186792 CTAAAA-ACAAGTTCCAAC
1 CTAAAATA-TAGTTCCAAC
* *
1186810 CTAAAAATATGGTTGCAAC
1 CT-AAAATATAGTTCCAAC
*
1186829 CTAAAA-ACAAGTTCCAA-
1 CTAAAATA-TAGTTCCAAC
1186846 CTCAAAATATGAG-T---AC
1 CT-AAAATAT-AGTTCCAAC
*
1186862 CTAAAACA-AGTTCCAAC
1 CTAAAATATAGTTCCAAC
* *
1186879 CTAAAATATGGTTGCAAC
1 CTAAAATATAGTTCCAAC
1186897 CTAAAA
1 CTAAAA
1186903 ACAAGCATGT
Statistics
Matches: 169, Mismatches: 32, Indels: 57
0.66 0.12 0.22
Matches are distributed among these distances:
13 2 0.01
14 6 0.04
15 20 0.12
16 4 0.02
17 34 0.20
18 81 0.48
19 21 0.12
20 1 0.01
ACGTcount: A:0.46, C:0.19, G:0.09, T:0.25
Consensus pattern (18 bp):
CTAAAATATAGTTCCAAC
Found at i:1186714 original size:82 final size:81
Alignment explanation
Indices: 1186561--1186714 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
1186551 GTTCTAACTT
*
1186561 AAAACATGGGTATCTAAAACAAGTTGTAACCTAAAATATGATTGCAACCTAAAATATGGTTGCAA
1 AAAACATGGGTATCTAAAACAAGTTGTAACCTAAAATATGATTGCAACCTAAAATAT-GTTCCAA
1186626 CCTAAAAACAAGTTCCA
65 CCTAAAAACAAGTTCCA
* *
1186643 AAAATATGGGTATCTAAAATAAGTT-TCAACCTAAAATAT-AGTTGCAACCTAAAAATAAT-TTC
1 AAAACATGGGTATCTAAAACAAGTTGT-AACCTAAAATATGA-TTGCAACCT-AAAAT-ATGTTC
*
1186705 CAACTTAAAA
62 CAACCTAAAA
1186715 TATGGGTATC
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
81 2 0.03
82 55 0.86
83 5 0.08
84 2 0.03
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.27
Consensus pattern (81 bp):
AAAACATGGGTATCTAAAACAAGTTGTAACCTAAAATATGATTGCAACCTAAAATATGTTCCAAC
CTAAAAACAAGTTCCA
Found at i:1186745 original size:68 final size:68
Alignment explanation
Indices: 1186605--1186907 Score: 452
Period size: 68 Copynumber: 4.5 Consensus size: 68
1186595 AATATGATTG
* *
1186605 CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCC-A---AAAATATGGGTATCTAAAATAAG
1 CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTATCTAAAACAAG
*
1186666 TTT
66 TTC
* * * * * *
1186669 CAACCTAAAATATAGTTGCAACCTAAAAATAATTTCCAACTTAAAATATGGGTATCTAAAATAAG
1 CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTATCTAAAACAAG
1186734 TTC
66 TTC
* *
1186737 CCACCTAAAATATGGTTACAACCTAAAAACAAGTTCCAACTCAAAATATGAGTATCTAAAAACAA
1 CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTATCT-AAAACAA
1186802 GTTC
65 GTTC
*
1186806 CAACCTAAAAATATGGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTACCTAAAACAA
1 CAACCT-AAAATATGGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTATCTAAAACAA
1186871 GTTC
65 GTTC
1186875 CAACCTAAAATATGGTTGCAACCTAAAAACAAG
1 CAACCTAAAATATGGTTGCAACCTAAAAACAAG
1186908 CATGTTTCTA
Statistics
Matches: 218, Mismatches: 15, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
64 34 0.16
65 1 0.00
68 102 0.47
69 32 0.15
70 49 0.22
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.24
Consensus pattern (68 bp):
CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTATCTAAAACAAG
TTC
Found at i:1186854 original size:138 final size:132
Alignment explanation
Indices: 1186605--1186907 Score: 444
Period size: 138 Copynumber: 2.2 Consensus size: 132
1186595 AATATGATTG
* * *
1186605 CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCCAAAAATATGGGTATCTAAAATAAGTTTC
1 CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCCAAAAATATGAGTATCTAAAACAAGTTCC
* * * * * *
1186670 AACCTAAAATATAGTTGCAACCTAAAAATAATTTCCAACTTAAAATATGGGTATCTAAAATAAGT
66 AACCTAAAATATAGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTACCTAAAACAAGT
1186735 TC
131 TC
* *
1186737 CCACCTAAAATATGGTTACAACCTAAAAACAAGTTCCAACTCAAAATATGAGTATCTAAAAACAA
1 CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCC-A---AAAATATGAGTATCT-AAAACAA
*
1186802 GTTCCAACCTAAAAATATGGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTACCTAAA
61 GTTCCAACCT-AAAATATAGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTACCTAAA
1186867 ACAAGTTC
125 ACAAGTTC
1186875 CAACCTAAAATATGGTTGCAACCTAAAAACAAG
1 CAACCTAAAATATGGTTGCAACCTAAAAACAAG
1186908 CATGTTTCTA
Statistics
Matches: 151, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
132 35 0.23
133 1 0.01
136 14 0.09
137 15 0.10
138 86 0.57
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.24
Consensus pattern (132 bp):
CAACCTAAAATATGGTTGCAACCTAAAAACAAGTTCCAAAAATATGAGTATCTAAAACAAGTTCC
AACCTAAAATATAGTTGCAACCTAAAAACAAGTTCCAACTCAAAATATGAGTACCTAAAACAAGT
TC
Found at i:1187434 original size:15 final size:16
Alignment explanation
Indices: 1187402--1187435 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1187392 GAGAAGACTG
*
1187402 AAAAAAATAGAATAGA
1 AAAAAAAAAGAATAGA
1187418 AAAAAAAAAGAAT-GA
1 AAAAAAAAAGAATAGA
1187433 AAA
1 AAA
1187436 TTATGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (16 bp):
AAAAAAAAAGAATAGA
Found at i:1189773 original size:36 final size:35
Alignment explanation
Indices: 1189690--1189804 Score: 169
Period size: 35 Copynumber: 3.3 Consensus size: 35
1189680 TTTGGCAAGA
*
1189690 AAAAATGATTTTCAAAGTTTGGTAAATATTTTTTTG
1 AAAAATGATTTTCAAAGTTTGGTAAAT-GTTTTTTG
1189726 -AAAATGATTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGATTTTCAAAGTTTGGTAAATGTTT-TTTG
* * *
1189761 AAAAATAATTTTCAAAGTTTGGTAGATGTTTGTTG
1 AAAAATGATTTTCAAAGTTTGGTAAATGTTTTTTG
1189796 AAAAATGAT
1 AAAAATGAT
1189805 AATGAGATAA
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
34 3 0.04
35 41 0.57
36 28 0.39
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.43
Consensus pattern (35 bp):
AAAAATGATTTTCAAAGTTTGGTAAATGTTTTTTG
Found at i:1194354 original size:35 final size:35
Alignment explanation
Indices: 1194309--1194429 Score: 163
Period size: 35 Copynumber: 3.4 Consensus size: 35
1194299 GGCAACCAAC
1194309 TTTGAAAAAATGATTTTCAAAGTTTGGTAAATGATTT
1 TTTG-AAAAATGATTTTCAAAGTTTGGTAAATG-TTT
*
1194346 TTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 TTTGAAAAATGATTTTCAAAGTTTGGTAAATGTTT
* *
1194380 CTTTGAAAAATAATTTTTCAAAGTTTGGTAGATGTTT
1 -TTTGAAAAATGA-TTTTCAAAGTTTGGTAAATGTTT
*
1194417 GTTGAAAAATGAT
1 TTTGAAAAATGAT
1194430 AATGGGATAA
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
34 3 0.04
35 31 0.41
36 15 0.20
37 26 0.35
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (35 bp):
TTTGAAAAATGATTTTCAAAGTTTGGTAAATGTTT
Found at i:1200321 original size:27 final size:27
Alignment explanation
Indices: 1200201--1200381 Score: 172
Period size: 29 Copynumber: 6.4 Consensus size: 27
1200191 GAAAATTACA
*
1200201 AAAATATCACATTTATTAAAAATAATTACC
1 AAAATGTCACATTT-TT-AAAATAATT-CC
*
1200231 AAAATATCACCA-TTTTACAAATAATTCCC
1 AAAATGTCA-CATTTTTA-AAATAATT-CC
*
1200260 AAAATGTCATCATTTTAAAAATAATTACC
1 AAAATGTCA-CATTTTTAAAATAATT-CC
*
1200289 AGAATGTCAC-TGTTTTAAAA-AATTCC
1 AAAATGTCACAT-TTTTAAAATAATTCC
1200315 TAAAATGTCACATTTTTCAAAATAATTCC
1 -AAAATGTCACATTTTT-AAAATAATTCC
*
1200344 -CAATGTCACATTTTTCAAAATAATTCC
1 AAAATGTCACATTTTT-AAAATAATTCC
1200371 TAAAATGTCAC
1 -AAAATGTCAC
1200382 TGGGTCGGGT
Statistics
Matches: 131, Mismatches: 10, Indels: 21
0.81 0.06 0.13
Matches are distributed among these distances:
26 2 0.02
27 44 0.34
28 14 0.11
29 54 0.41
30 15 0.11
31 2 0.02
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.34
Consensus pattern (27 bp):
AAAATGTCACATTTTTAAAATAATTCC
Found at i:1200338 original size:56 final size:56
Alignment explanation
Indices: 1200201--1200381 Score: 208
Period size: 56 Copynumber: 3.2 Consensus size: 56
1200191 GAAAATTACA
* * * *
1200201 AAAATATCACATTTATTAAAAATAATTACCAAAATATCACCATTTTACAAATAATTCCC
1 AAAATGTCACATTT-TTAAAAATAATTACCAAAATGTCA-CTTTTTA-AAATAATTCCT
*
1200260 AAAATGTCATCA-TTTTAAAAATAATTACCAGAATGTCACTGTTTTAAAA-AATTCCT
1 AAAATGTCA-CATTTTTAAAAATAATTACCAAAATGTCACT-TTTTAAAATAATTCCT
* *
1200316 AAAATGTCACATTTTTCAAAATAATT-CC-CAATGTCACATTTTTCAAAATAATTCCT
1 AAAATGTCACATTTTTAAAAATAATTACCAAAATGTCAC-TTTTT-AAAATAATTCCT
1200372 AAAATGTCAC
1 AAAATGTCAC
1200382 TGGGTCGGGT
Statistics
Matches: 109, Mismatches: 7, Indels: 15
0.83 0.05 0.11
Matches are distributed among these distances:
54 12 0.11
55 9 0.08
56 45 0.41
57 4 0.04
58 27 0.25
59 10 0.09
60 2 0.02
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.34
Consensus pattern (56 bp):
AAAATGTCACATTTTTAAAAATAATTACCAAAATGTCACTTTTTAAAATAATTCCT
Found at i:1202405 original size:43 final size:43
Alignment explanation
Indices: 1202344--1202470 Score: 191
Period size: 44 Copynumber: 2.9 Consensus size: 43
1202334 AAGTTTAGAG
* *
1202344 TCTATTCATTTTATAAGTTTATAATACTAAACTATAAACAAAC
1 TCTATTCATTTTCTAAGTTTATAATACTAAAATATAAACAAAC
*
1202387 TCTATTCATTTTCTAAGTTTATAATACTAAAATATAAAAAAAAC
1 TCTATTCATTTTCTAAGTTTATAATACTAAAATAT-AAACAAAC
* * *
1202431 TCTATTCGTTTTCTAAGTTTATAATCCTAAAATGTAAACA
1 TCTATTCATTTTCTAAGTTTATAATACTAAAATATAAACA
1202471 TTAAAAAGGG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
43 37 0.49
44 39 0.51
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (43 bp):
TCTATTCATTTTCTAAGTTTATAATACTAAAATATAAACAAAC
Done.