Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007749.1 Hibiscus syriacus cultivar Beakdansim tig00110015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1787532
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 8
Found at i:1698241 original size:19 final size:20
Alignment explanation
Indices: 1698187--1698253 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
1698177 TAGTTTACTT
* *
1698187 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
1698207 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
1698227 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
1698246 TCGCAACG
1 TCGCAACG
1698254 ACAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:1698261 original size:14 final size:14
Alignment explanation
Indices: 1698242--1698299 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
1698232 ATGCGAAATG
1698242 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
1698256 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
1698272 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
1698288 AAAATCGCAACG
1 AAAATCGCAACG
1698300 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:1698284 original size:32 final size:33
Alignment explanation
Indices: 1698226--1698316 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
1698216 GGAAATGGCT
*
1698226 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
1698259 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
1698291 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
1698317 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 32 0.57
33 24 0.43
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:1698310 original size:19 final size:19
Alignment explanation
Indices: 1698187--1698321 Score: 85
Period size: 19 Copynumber: 7.6 Consensus size: 19
1698177 TAGTTTACTT
* **
1698187 TCGCAACACGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
***
1698207 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
1698227 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
1698246 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
1698260 TCGCAACGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
*
1698278 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
1698292 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
1698311 TCGCAATGCGA
1 TCGCAACGCGA
1698322 TTTGTGTTTC
Statistics
Matches: 92, Mismatches: 11, Indels: 25
0.72 0.09 0.20
Matches are distributed among these distances:
14 20 0.22
15 1 0.01
16 6 0.07
17 2 0.02
18 11 0.12
19 27 0.29
20 24 0.26
21 1 0.01
ACGTcount: A:0.43, C:0.24, G:0.21, T:0.13
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:1698352 original size:14 final size:14
Alignment explanation
Indices: 1698333--1698390 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
1698323 TTGTGTTTCG
1698333 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
1698347 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
1698363 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
1698379 CGTTGCGATTTT
1 CGTTGCGATTTT
1698391 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:1698367 original size:32 final size:33
Alignment explanation
Indices: 1698328--1698406 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
1698318 GCGATTTGTG
1698328 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1698360 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
1698393 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
1698407 AGCCATTTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 27 0.60
33 18 0.40
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:1698405 original size:19 final size:19
Alignment explanation
Indices: 1698347--1698464 Score: 95
Period size: 20 Copynumber: 6.4 Consensus size: 19
1698337 GCGATTTTGT
1698347 CGTTGCGA-TTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
1698365 CGTTGCGA-TTT--TGT--
1 CGTTGCGATTTTCATTTCG
1698379 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* ***
1698398 CATTGCGATAGCCATTTCCG
1 CGTTGCGATTTTCATTT-CG
**
1698418 CGTTGCGATAGTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
1698437 CGTTGCGATTTTAAGTTTCG
1 CGTTGCGATTTTCA-TTTCG
*
1698457 TGTTGCGA
1 CGTTGCGA
1698465 AAGTAAACTA
Statistics
Matches: 81, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
14 8 0.10
15 3 0.04
16 2 0.02
17 2 0.02
18 11 0.14
19 26 0.32
20 29 0.36
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.42
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:1700512 original size:38 final size:33
Alignment explanation
Indices: 1700432--1700547 Score: 133
Period size: 33 Copynumber: 3.4 Consensus size: 33
1700422 AAAACAGACT
*** *
1700432 ATCGCAATGCGAAATGGTTATCGCCACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
1700465 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAAA
* *
1700503 ATCGCAATGCGAAATGTAAATCGTAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
1700536 ATCGCAATGCGA
1 ATCGCAATGCGA
1700548 TTTTCATTTC
Statistics
Matches: 72, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
33 38 0.53
34 1 0.01
35 2 0.03
36 2 0.03
37 1 0.01
38 28 0.39
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.17
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
Found at i:1700535 original size:19 final size:19
Alignment explanation
Indices: 1700461--1700525 Score: 121
Period size: 19 Copynumber: 3.4 Consensus size: 19
1700451 ATCGCCACGA
1700461 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
1700480 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
1700499 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
*
1700518 GTAAATCG
1 GAAAATCG
1700526 TAACGAGAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.17
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:1700623 original size:20 final size:20
Alignment explanation
Indices: 1700566--1700623 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
1700556 TCGCATTGCG
* *
1700566 ATTTTCTCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAGCC
*
1700586 ATTTTCGCGTTGCAATAGCC
1 ATTTTCGCGTTGCGATAGCC
1700606 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
1700624 TCAAATGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:1701711 original size:24 final size:24
Alignment explanation
Indices: 1701684--1701737 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
1701674 GTATTCGAAA
* *
1701684 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
1701708 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
1701732 TTTGAT
1 TTTGAT
1701738 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:1701930 original size:13 final size:13
Alignment explanation
Indices: 1701912--1701936 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1701902 ATATAATCCT
1701912 GAAGAAGAAAAAA
1 GAAGAAGAAAAAA
1701925 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1701937 GTCCCCGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAAAAA
Found at i:1702472 original size:19 final size:19
Alignment explanation
Indices: 1702408--1702573 Score: 180
Period size: 19 Copynumber: 8.8 Consensus size: 19
1702398 TCTTTTGGTT
*
1702408 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
1702427 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
1702447 GGAAATGACTATCGCAACGC
1 -GAAATGAAAATCGCAACGC
** *
1702467 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
1702485 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
1702500 GAAATGAAAATCGCAACCGT
1 GAAATGAAAATCGCAA-CGC
*
1702520 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
1702539 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
1702558 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
1702574 TGCTATTTTG
Statistics
Matches: 127, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
14 10 0.08
15 2 0.02
18 2 0.02
19 64 0.50
20 47 0.37
21 2 0.02
ACGTcount: A:0.45, C:0.22, G:0.21, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:1702543 original size:39 final size:38
Alignment explanation
Indices: 1702408--1702573 Score: 153
Period size: 39 Copynumber: 4.4 Consensus size: 38
1702398 TCTTTTGGTT
* * *
1702408 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATAAAAATCGCAACGCGA-AATGAAAATCGCAACGC
* ** ** *
1702447 GGAAATGACTATCGCAACGCGAAATGACTATCGCGAC-C
1 -GAAATAAAAATCGCAACGCGAAATGAAAATCGCAACGC
* * *
1702485 ---A-GACAATCGCAACGCGAAATGAAAATCGCAACCGT
1 GAAATAAAAATCGCAACGCGAAATGAAAATCGCAA-CGC
1702520 GAAATAAAAATCGCAACGCGAAATGAAAATCGCAACGC
1 GAAATAAAAATCGCAACGCGAAATGAAAATCGCAACGC
*
1702558 GAAATGAAAATCGCAA
1 GAAATAAAAATCGCAA
1702574 TGCTATTTTG
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
33 26 0.25
34 2 0.02
38 19 0.18
39 40 0.38
40 18 0.17
ACGTcount: A:0.45, C:0.22, G:0.21, T:0.13
Consensus pattern (38 bp):
GAAATAAAAATCGCAACGCGAAATGAAAATCGCAACGC
Found at i:1702600 original size:19 final size:19
Alignment explanation
Indices: 1702578--1702640 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
1702568 TCGCAATGCT
*
1702578 ATTTTGGTTTCGCGTTGCG
1 ATTTTGATTTCGCGTTGCG
*
1702597 ATTTTTATTTCGCGTTGCG
1 ATTTTGATTTCGCGTTGCG
* *
1702616 ATAGTT-ATTTCCGTGTTGCG
1 AT-TTTGATTT-CGCGTTGCG
1702636 ATTTT
1 ATTTT
1702641 ATTCTCGAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 25 0.68
20 12 0.32
ACGTcount: A:0.11, C:0.14, G:0.24, T:0.51
Consensus pattern (19 bp):
ATTTTGATTTCGCGTTGCG
Found at i:1702642 original size:19 final size:18
Alignment explanation
Indices: 1702585--1702643 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 18
1702575 GCTATTTTGG
1702585 TTTCGCGTTGCGATTTTTA
1 TTTCGCGTTGCGA-TTTTA
*
1702604 TTTCGCGTTGCGATAGTTA
1 TTTCGCGTTGCGAT-TTTA
*
1702623 TTTCCGTGTTGCGATTTTA
1 TTT-CGCGTTGCGATTTTA
1702642 TT
1 TT
1702644 CTCGAAACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.03
19 24 0.69
20 10 0.29
ACGTcount: A:0.12, C:0.15, G:0.22, T:0.51
Consensus pattern (18 bp):
TTTCGCGTTGCGATTTTA
Found at i:1703246 original size:21 final size:21
Alignment explanation
Indices: 1703217--1703292 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1703207 ATAGTAAGTA
1703217 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
1703238 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
1703258 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
*
1703279 TCGCGTTGCGATTT
1 TCGCATTGCGATTT
1703293 ATTTATTCGC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.16, C:0.25, G:0.18, T:0.41
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:1703247 original size:41 final size:41
Alignment explanation
Indices: 1703156--1703290 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
1703146 GCTATGTAAA
* * * * ** *
1703156 TCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTT-GTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
*
1703196 ATCGCATTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
1703238 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
1703279 TCGCGTTGCGAT
1 TCGCGTTGCGAT
1703291 TTATTTATTC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:1703261 original size:20 final size:20
Alignment explanation
Indices: 1703217--1703309 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
1703207 ATAGTAAGTA
* **
1703217 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
1703238 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
1703258 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
* *
1703279 TCGCGTTGCGATTTATTTAT
1 TCGCATTGCGATTTACTTAT
1703299 TCGCATTGCGA
1 TCGCATTGCGA
1703310 ATTGGAAAAA
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
20 31 0.54
21 26 0.46
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:1703291 original size:41 final size:41
Alignment explanation
Indices: 1703217--1703309 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
1703207 ATAGTAAGTA
1703217 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
*
1703258 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTATTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1703299 TCGCATTGCGA
1 TCGCATTGCGA
1703310 ATTGGAAAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:1714828 original size:18 final size:18
Alignment explanation
Indices: 1714805--1714844 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
1714795 TTTAGGCCTG
1714805 GCCTGGGCCTATTTAAAA
1 GCCTGGGCCTATTTAAAA
*
1714823 GCCT-GGCCTGTTTAAAA
1 GCCTGGGCCTATTTAAAA
1714840 GCCTG
1 GCCTG
1714845 TTTAACAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (18 bp):
GCCTGGGCCTATTTAAAA
Found at i:1715858 original size:35 final size:35
Alignment explanation
Indices: 1715812--1715887 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
1715802 AAAACATCCC
* * *
1715812 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCACAAATTCCAAAATAAT
*
1715847 TCAATTTCATTCTAAACCATAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCACAAATTCCAAAATAAT
1715882 TCAATT
1 TCAATT
1715888 AAATTCAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.41, C:0.22, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCACAAATTCCAAAATAAT
Found at i:1716427 original size:130 final size:130
Alignment explanation
Indices: 1716284--1716531 Score: 424
Period size: 130 Copynumber: 1.9 Consensus size: 130
1716274 TATTTATATA
* * **
1716284 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTAGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
*
1716349 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
1716414 ATCAATTTAGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
1 ATCAATTTAGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* * *
1716479 TTAACACATGATCATGATATGTGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTA
1716532 GAAGAAAATT
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 110 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (130 bp):
ATCAATTTAGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
TTAACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:1716501 original size:23 final size:21
Alignment explanation
Indices: 1716458--1716504 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
1716448 AATTAATCAT
1716458 TTAACCAGGATCTGACATGTG
1 TTAACCAGGATCTGACATGTG
* *
1716479 TTAACACATGATCATGATATGTG
1 TTAAC-CAGGATC-TGACATGTG
1716502 TTA
1 TTA
1716505 TTGGTGACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 6 0.27
23 11 0.50
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (21 bp):
TTAACCAGGATCTGACATGTG
Found at i:1716562 original size:130 final size:129
Alignment explanation
Indices: 1716298--1716562 Score: 327
Period size: 130 Copynumber: 2.0 Consensus size: 129
1716288 ATTTGGTCCT
* ** *
1716298 AAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTAGCACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
*** * * *** *
1716363 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCTATCAATTTAGTCCT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
1716428 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
* * * *
1716493 TGATATGTGTTATTGGTGACACATGTCACCACCTAATTAGAAGAAAATTAAGTTA-CAAAGAAGT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAGT
1716557 -A
128 CA
1716558 AAATT
1 AAATT
1716563 TGGGTCTTGG
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
130 101 0.88
132 9 0.08
133 5 0.04
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34
Consensus pattern (129 bp):
AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:1716891 original size:28 final size:27
Alignment explanation
Indices: 1716860--1716921 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
1716850 AGTTGATACA
*
1716860 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
1716888 ATATTTTTTAAACTAAATTTAATAATT
1 ATATTTTAAAAAATAAATTTAAGAATT
1716915 ATATTTT
1 ATATTTT
1716922 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:1717022 original size:16 final size:18
Alignment explanation
Indices: 1717001--1717034 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
1716991 ATTTCTTATT
1717001 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
1717017 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
1717035 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:1723033 original size:2 final size:2
Alignment explanation
Indices: 1723026--1723055 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1723016 TTGCGCATAC
1723026 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1723056 TCCCTATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1723682 original size:35 final size:35
Alignment explanation
Indices: 1723636--1723705 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
1723626 AATGAGAAAG
1723636 CTGATGTATTATCTGATGATGATGATATTGTGATC
1 CTGATGTATTATCTGATGATGATGATATTGTGATC
1723671 CTGATGTATTATCTGATGATGATGATATTGTGATC
1 CTGATGTATTATCTGATGATGATGATATTGTGATC
1723706 TCAGTGAAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.43
Consensus pattern (35 bp):
CTGATGTATTATCTGATGATGATGATATTGTGATC
Found at i:1730827 original size:75 final size:75
Alignment explanation
Indices: 1730690--1730834 Score: 184
Period size: 75 Copynumber: 1.9 Consensus size: 75
1730680 GGTAGACATA
* * **
1730690 AATAAAATTTCAGGGTGGATATCATCAATAAAATAGGTCATAATCGAATAAATTTTAAAATTTCA
1 AATAAAATTTCAGGGTGGATACCATCAATAAAATAGATCATAATCGAATAAAAATTAAAATTTCA
1730755 AGGTGGGTAC
66 AGGTGGGTAC
* * * **
1730765 AATAAATTTTTAGGGTGGATACCATCAATAAAATAGATGACTAATCGAA-AAAAATTCGAATTTC
1 AATAAAATTTCAGGGTGGATACCATCAATAAAATAGATCA-TAATCGAATAAAAATTAAAATTTC
*
1730829 AGGGTG
65 AAGGTG
1730835 AGCCCGACCC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
75 51 0.86
76 8 0.14
ACGTcount: A:0.43, C:0.10, G:0.18, T:0.30
Consensus pattern (75 bp):
AATAAAATTTCAGGGTGGATACCATCAATAAAATAGATCATAATCGAATAAAAATTAAAATTTCA
AGGTGGGTAC
Found at i:1731905 original size:5 final size:5
Alignment explanation
Indices: 1731895--1731934 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
1731885 GTATAACATA
1731895 CAGAG CAGAG CAGAG CAGAG CAGAG CAGAG CAGAG CAGAG
1 CAGAG CAGAG CAGAG CAGAG CAGAG CAGAG CAGAG CAGAG
1731935 GATTTCTGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
CAGAG
Found at i:1740988 original size:3 final size:3
Alignment explanation
Indices: 1740980--1741055 Score: 152
Period size: 3 Copynumber: 25.3 Consensus size: 3
1740970 CCCCCACCCT
1740980 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1741028 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1741056 GTGTTAAGTC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 73 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:1745185 original size:12 final size:12
Alignment explanation
Indices: 1745170--1745215 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
1745160 CGGTTTTTTT
*
1745170 ACCGGATAAAAA
1 ACCGGTTAAAAA
1745182 ACCGGTTTGAAAAAA
1 ACCGG-TT--AAAAA
1745197 ACCGGTTAAAAA
1 ACCGGTTAAAAA
1745209 ACCGGTT
1 ACCGGTT
1745216 TTTATCCGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 17 0.57
13 1 0.03
14 2 0.07
15 10 0.33
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (12 bp):
ACCGGTTAAAAA
Found at i:1745197 original size:15 final size:13
Alignment explanation
Indices: 1745176--1745216 Score: 57
Period size: 12 Copynumber: 3.1 Consensus size: 13
1745166 TTTTACCGGA
1745176 TAAAAAACCGGTT
1 TAAAAAACCGGTT
1745189 TGAAAAAAACCGG-T
1 T--AAAAAACCGGTT
1745203 TAAAAAACCGGTT
1 TAAAAAACCGGTT
1745216 T
1 T
1745217 TTATCCGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 10 0.40
13 3 0.12
14 2 0.08
15 10 0.40
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (13 bp):
TAAAAAACCGGTT
Found at i:1747532 original size:21 final size:21
Alignment explanation
Indices: 1747508--1747547 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1747498 TTTATTTTAT
1747508 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
1747529 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
1747548 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:1747595 original size:33 final size:33
Alignment explanation
Indices: 1747542--1747640 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
1747532 TTTGTTTCAA
1747542 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1747574 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
1747607 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1747640 T
1 T
1747641 ATGTTGAGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 11 0.17
33 52 0.83
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:1747669 original size:13 final size:13
Alignment explanation
Indices: 1747626--1747680 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
1747616 TTGGAAGTAT
1747626 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
1747639 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
1747653 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
1747666 TTAAGTATTTGAA
1 TTAAGTATTTCAA
1747679 TT
1 TT
1747681 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:1747901 original size:21 final size:21
Alignment explanation
Indices: 1747875--1747931 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
1747865 TAGAGCATGG
*
1747875 GGGAATCGGTACCCTCTCATA
1 GGGAATCGGTTCCCTCTCATA
*
1747896 GGGAATCGGTTTCCTCTCATA
1 GGGAATCGGTTCCCTCTCATA
1747917 GGGAATCGGTTCCCT
1 GGGAATCGGTTCCCT
1747932 AAGTGTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.28
Consensus pattern (21 bp):
GGGAATCGGTTCCCTCTCATA
Found at i:1748134 original size:17 final size:17
Alignment explanation
Indices: 1748114--1748146 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1748104 GTTTTTTTAT
*
1748114 AACCGGTTTTTTAAAAA
1 AACCGATTTTTTAAAAA
1748131 AACCGATTTTTTAAAA
1 AACCGATTTTTTAAAA
1748147 CCGAAACCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (17 bp):
AACCGATTTTTTAAAAA
Found at i:1758140 original size:2 final size:2
Alignment explanation
Indices: 1758133--1758168 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1758123 TAGCAGCTTG
1758133 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1758169 TTTTCCATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1761551 original size:10 final size:10
Alignment explanation
Indices: 1761522--1761553 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
1761512 ATAGACATAA
*
1761522 ATTTTATATA
1 ATTTTATATT
1761532 ATTTTATATT
1 ATTTTATATT
1761542 ATTTTATATT
1 ATTTTATATT
1761552 AT
1 AT
1761554 GTGTACACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
ATTTTATATT
Found at i:1762523 original size:20 final size:20
Alignment explanation
Indices: 1762498--1762545 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
1762488 ATGCAAGCCG
1762498 TGCGACCACTTAGGTCGCCA
1 TGCGACCACTTAGGTCGCCA
1762518 TGCGACCACTTAGGTCGCCA
1 TGCGACCACTTAGGTCGCCA
1762538 TGCGACCA
1 TGCGACCA
1762546 AGCCCCTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.21, C:0.35, G:0.25, T:0.19
Consensus pattern (20 bp):
TGCGACCACTTAGGTCGCCA
Found at i:1762747 original size:15 final size:15
Alignment explanation
Indices: 1762727--1762755 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1762717 TTCGGTTGTA
1762727 AGAAGAAAGAAAGGG
1 AGAAGAAAGAAAGGG
1762742 AGAAGAAAGAAAGG
1 AGAAGAAAGAAAGG
1762756 ATCATAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (15 bp):
AGAAGAAAGAAAGGG
Found at i:1763057 original size:55 final size:55
Alignment explanation
Indices: 1762998--1763107 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 55
1762988 ATTCGTTTAA
*
1762998 TTAGTTTGTTTA-TTT-GTTGAAGTTATATTAT-ATATAAAAATAGTTAATTAGTTTT
1 TTAGTTTG-TTAGTTTAGTT-AAGTTAGATTATAATA-AAAAATAGTTAATTAGTTTT
* *
1763053 TTAGTTTGTTAGTTTAAGTTAAGTTGGATTATAATAAAAAATAGTTTATTAGTTT
1 TTAGTTTGTTAGTTT-AGTTAAGTTAGATTATAATAAAAAATAGTTAATTAGTTT
1763108 AAGATATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
54 3 0.06
55 11 0.23
56 28 0.58
57 6 0.12
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.52
Consensus pattern (55 bp):
TTAGTTTGTTAGTTTAGTTAAGTTAGATTATAATAAAAAATAGTTAATTAGTTTT
Found at i:1766789 original size:26 final size:25
Alignment explanation
Indices: 1766733--1766789 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
1766723 ACTAAGTAGA
* * * *
1766733 TTTTTAATTTTTATTATTTTATTTT
1 TTTTTAAATTTAATTATTTGATTAT
1766758 TATTTTAAATTTAATTATTTGATTAAT
1 T-TTTTAAATTTAATTATTTGATT-AT
1766785 TTTTT
1 TTTTT
1766790 GTACTAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.04
26 23 0.88
27 2 0.08
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (25 bp):
TTTTTAAATTTAATTATTTGATTAT
Found at i:1775367 original size:24 final size:24
Alignment explanation
Indices: 1775335--1775428 Score: 120
Period size: 24 Copynumber: 4.0 Consensus size: 24
1775325 GTCGAGGGTT
* * *
1775335 TACGTGGTCCTTCGGGATAAATTC
1 TACGCGGTCCTTTGGGACAAATTC
1775359 TACGCGGTCCTTTGGGACAAATTC
1 TACGCGGTCCTTTGGGACAAATTC
1775383 TACGCGGTCCTTTGGGACAAA-TC
1 TACGCGGTCCTTTGGGACAAATTC
* *
1775406 TACGTGG-CACTTTGGTACAAATT
1 TACGCGGTC-CTTTGGGACAAATT
1775429 ATATGAGCAG
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
22 1 0.02
23 19 0.30
24 43 0.68
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (24 bp):
TACGCGGTCCTTTGGGACAAATTC
Found at i:1775419 original size:47 final size:48
Alignment explanation
Indices: 1775335--1775428 Score: 120
Period size: 47 Copynumber: 2.0 Consensus size: 48
1775325 GTCGAGGGTT
* *
1775335 TACGTGGTCCTTCGGGATAAATTCTACGCGGTCCTTTGGGACAAATTC
1 TACGCGGTCCTTCGGGACAAATTCTACGCGGTCCTTTGGGACAAATTC
* * *
1775383 TACGCGGTCCTTTGGGACAAA-TCTACGTGG-CACTTTGGTACAAATT
1 TACGCGGTCCTTCGGGACAAATTCTACGCGGTC-CTTTGGGACAAATT
1775429 ATATGAGCAG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
46 1 0.03
47 21 0.52
48 18 0.45
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (48 bp):
TACGCGGTCCTTCGGGACAAATTCTACGCGGTCCTTTGGGACAAATTC
Found at i:1779441 original size:26 final size:26
Alignment explanation
Indices: 1779405--1779457 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1779395 AAATTTCAAG
*
1779405 GAATGGAAAAGGCACTTACTTATAGT
1 GAATGGAAAAGACACTTACTTATAGT
1779431 GAATGGAAAAGACACTTACTTATAGT
1 GAATGGAAAAGACACTTACTTATAGT
1779457 G
1 G
1779458 CTTGGCTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (26 bp):
GAATGGAAAAGACACTTACTTATAGT
Found at i:1783848 original size:31 final size:32
Alignment explanation
Indices: 1783778--1783865 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 32
1783768 AAAGTGACCC
* * * *
1783778 TTGGGTAGGCTCTTAGGACTCAAGATGCTCCC
1 TTGGGTAGGCTCTTAGGACCCAAGGTACTCCA
*
1783810 TTGGGTAGGCTCTTAGG-CCCAAGGTACTTCA
1 TTGGGTAGGCTCTTAGGACCCAAGGTACTCCA
* * *
1783841 TTGGGTAGACTCTAAGGCCCCAAGG
1 TTGGGTAGGCTCTTAGGACCCAAGG
1783866 AAGCCTTAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 24 0.50
32 24 0.50
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (32 bp):
TTGGGTAGGCTCTTAGGACCCAAGGTACTCCA
Done.