Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000775.1 Hibiscus syriacus cultivar Beakdansim tig00001508_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101862

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3294--3363
30
2.4
30
88
6
101
24
21
24
30
1.99
10505--10547
21
2.0
21
100
0
86
53
18
9
18
1.70
20174--20290
2
60.5
2
77
16
122
43
0
1
53
1.16
20174--20290
33
3.4
34
82
10
141
43
0
1
53
1.16
22219--22287
12
5.4
12
74
19
59
13
4
2
79
0.99
22215--22286
8
8.2
8
73
21
56
12
4
2
80
0.96
24703--24823
18
6.6
19
76
15
103
38
0
4
57
1.18
24702--24822
2
65.0
2
70
22
77
39
0
4
56
1.19
24705--24827
61
2.0
61
87
6
178
38
0
4
57
1.18
24703--24802
43
2.3
41
79
17
71
39
0
3
58
1.14
25315--25366
27
2.0
25
88
7
77
63
19
11
5
1.47
27342--27387
20
2.3
19
85
14
58
50
8
15
26
1.73
36992--37037
20
2.3
19
85
14
58
50
8
15
26
1.73
44841--44922
23
3.6
23
83
0
110
29
24
28
18
1.98
47094--47219
47
2.8
44
84
5
153
30
22
7
39
1.82
47333--47402
30
2.3
30
95
0
122
30
24
17
28
1.97
54214--54339
47
2.8
45
81
10
139
30
19
7
42
1.79
66385--66468
20
4.1
20
71
13
62
22
35
26
15
1.94
66427--66466
21
1.9
21
89
0
62
25
40
25
10
1.86
69217--69275
21
2.7
21
94
5
100
27
25
30
16
1.97
70514--70727
2
113.5
2
77
19
212
45
0
1
51
1.18
71229--71293
25
2.6
25
92
0
103
63
16
13
6
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71245--71291
15
3.5
15
70
27
50
61
19
14
4
1.49
72106--72163
9
6.0
9
79
15
62
13
3
1
81
0.91
72104--72163
20
3.0
20
77
0
66
13
3
1
81
0.89
72105--72163
5
12.0
5
77
16
52
13
3
1
81
0.90
72125--72169
21
2.1
21
84
8
56
17
8
0
73
1.08
75212--75455
43
5.7
43
91
1
364
25
22
23
28
1.99
75212--75504
43
6.8
42
87
2
282
26
21
23
27
1.99
75208--75503
129
2.3
130
84
4
384
27
20
23
28
1.99
75212--75504
86
3.4
86
87
1
356
26
21
23
27
1.99
75650--75711
21
3.0
21
80
0
70
56
17
4
20
1.59
80910--80970
25
2.4
25
91
0
95
42
4
40
11
1.62
81193--81381
81
2.3
82
78
7
210
29
17
20
32
1.96
81193--81364
41
4.2
41
81
8
206
31
18
19
30
1.96
89058--89116
30
1.9
30
83
10
75
23
11
27
37
1.90
89806--89971
60
2.8
60
81
8
187
33
19
5
42
1.74
91972--92018
20
2.4
19
82
10
67
53
10
17
19
1.72
91981--92023
20
2.3
19
88
11
63
51
11
16
20
1.75
94245--94309
21
3.1
21
80
6
69
40
15
29
15
1.88
96186--96230
18
2.5
18
96
0
81
28
2
11
57
1.45
96349--97296
190
4.9
193
95
3
1626
36
16
16
31
1.90
96349--97296
387
2.4
383
93
4
1620
36
16
16
31
1.90
98759--98838
3
27.0
3
75
2
72
35
6
35
23
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98755--98838
12
7.1
12
84
1
89
34
7
34
23
1.82
100294--100805
183
2.8
181
92
4
854
35
14
16
33
1.90

Tables:   1

The End!