genome.fa.s7752.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007752.1 Hibiscus syriacus cultivar Beakdansim tig00110018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61922

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2481--2543	21	3.2	21	68	21	55	15	15	0	68	1.22
2464--2543	37	2.2	36	93	4	142	12	16	0	71	1.15
6604--7244	312	2.0	314	96	2	1182	27	19	15	37	1.92
12386--12573	5	38.4	5	89	10	284	58	0	0	41	0.98
12386--12575	89	2.2	90	92	7	320	58	0	0	41	0.98
17873--17965	21	4.6	20	78	4	96	38	18	24	18	1.92
17870--17965	41	2.3	41	98	0	183	39	17	23	18	1.92
17873--17965	20	4.6	20	78	4	96	38	18	24	18	1.92
17892--18026	41	3.3	41	81	6	123	37	20	21	20	1.94
17954--18047	20	4.7	20	80	2	89	34	24	18	23	1.96
18643--18884	19	13.1	19	81	11	270	12	21	21	44	1.85
18772--18859	33	2.6	33	92	1	140	11	25	25	38	1.89
18827--18884	20	2.9	20	80	10	64	13	24	18	43	1.87
20881--20964	42	2.0	42	83	0	105	22	38	16	22	1.93
20937--21003	21	3.2	21	66	6	55	23	35	20	19	1.95
22360--22395	14	2.6	14	90	0	54	33	0	22	44	1.53
22574--22691	19	6.7	19	66	19	76	13	23	20	42	1.88
22578--22671	33	2.8	33	98	0	179	12	24	19	43	1.85
24958--24982	12	2.1	12	100	0	50	0	28	0	72	0.86
26453--26489	14	2.6	14	86	0	56	48	21	0	29	1.50
27040--27076	14	2.6	14	86	0	56	48	21	0	29	1.50
28944--29095	14	8.9	18	72	20	121	43	24	21	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28946--29044	19	5.5	19	77	12	93	39	24	23	13	1.90
28985--29095	32	3.4	32	96	1	195	45	24	19	9	1.80
29102--29197	19	5.7	16	71	22	65	11	18	22	46	1.81
29124--29181	14	3.9	14	79	16	71	8	17	25	48	1.75
29107--29197	32	2.8	33	93	3	157	10	17	23	48	1.79
29183--29225	20	2.2	20	87	4	61	18	20	20	39	1.93
29709--29753	18	2.5	18	85	0	63	15	15	42	26	1.87
31071--31108	20	1.9	20	88	0	58	50	21	15	13	1.78
31372--31415	22	2.0	22	95	0	79	18	15	45	20	1.85
31623--31758	41	3.3	42	78	5	118	20	20	20	38	1.94
31641--31720	21	3.9	21	75	6	65	18	18	20	42	1.89
31603--31697	20	4.7	20	80	2	91	23	17	24	34	1.96
31686--31778	21	4.6	20	79	4	105	18	23	18	39	1.92
31686--31781	41	2.3	41	96	0	174	18	22	17	40	1.91
32938--32967	15	2.0	15	93	0	51	13	23	20	43	1.86
39363--39418	25	2.3	23	88	8	85	41	0	12	46	1.42
39824--40171	174	2.0	174	97	0	660	31	15	15	37	1.89
42993--43055	8	7.9	8	100	0	126	36	12	25	25	1.91
47608--48046	230	1.9	223	84	5	576	37	16	15	30	1.90
48448--49056	332	1.8	330	84	4	841	34	16	16	32	1.91
48778--49276	223	2.2	224	85	4	673	36	16	17	29	1.92
47719--49280	558	2.8	558	88	1	2304	36	16	16	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55262--55299	13	2.9	13	88	11	60	52	0	13	34	1.40
55262--55304	12	3.1	14	80	16	54	55	2	11	30	1.48
56013--56050	20	1.9	20	88	0	58	21	26	10	42	1.85
57830--57870	2	20.5	2	100	0	82	51	0	48	0	1.00

Tables:   1

The End!