Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007754.1 Hibiscus syriacus cultivar Beakdansim tig00110020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3698414
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 15
Found at i:667855 original size:20 final size:21
Alignment explanation
Indices: 667830--667922 Score: 91
Period size: 21 Copynumber: 4.5 Consensus size: 21
667820 TTTTCCCAAT
*
667830 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
667850 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
* *
667871 TAGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
667891 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
667912 TCGCAATGCGA
1 TCGCAATGCGA
667923 TACTGACTAT
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 26 0.46
21 30 0.54
ACGTcount: A:0.41, C:0.17, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:667877 original size:41 final size:41
Alignment explanation
Indices: 667832--667922 Score: 173
Period size: 41 Copynumber: 2.2 Consensus size: 41
667822 TTCCCAATTC
667832 GCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATA
1 GCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATA
*
667873 GCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATC
1 GCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATA
667914 GCAATGCGA
1 GCAATGCGA
667923 TACTGACTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.16
Consensus pattern (41 bp):
GCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATA
Found at i:667935 original size:41 final size:41
Alignment explanation
Indices: 667849--667983 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
667839 GAATAAGTAA
* * *
667849 ATCGCAACGCGAATTGGGAAAATAGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
667890 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
667931 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
667972 TTCGCAACGCGA
1 ATCGCAACGCGA
667984 TACTGACTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.19
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:667936 original size:20 final size:20
Alignment explanation
Indices: 667911--668005 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
667901 AATTGGGAAA
*
667911 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
667931 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
667952 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
667972 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
667992 TTCGCAACGCGATA
1 ATCGCAACGCGATA
668006 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:668221 original size:22 final size:22
Alignment explanation
Indices: 668193--668236 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
668183 CACTCTCTCA
668193 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
668215 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
668237 TATCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:668525 original size:20 final size:20
Alignment explanation
Indices: 668500--668537 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
668490 CGATTCTCTC
668500 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
668520 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
668538 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:669884 original size:18 final size:18
Alignment explanation
Indices: 669858--669902 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
669848 TCCACTTCGG
*
669858 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
669876 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
669894 GAGCCATCA
1 GAGCCATCA
669903 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:670400 original size:20 final size:20
Alignment explanation
Indices: 670375--670420 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
670365 TAGTTTACTT
670375 TCGCAACACGAAAATGACTA
1 TCGCAACACGAAAATGACTA
** * *
670395 TCGCAATGCGGAAATGGCTA
1 TCGCAACACGAAAATGACTA
670415 TCGCAA
1 TCGCAA
670421 TGCGAAATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (20 bp):
TCGCAACACGAAAATGACTA
Found at i:670429 original size:19 final size:20
Alignment explanation
Indices: 670386--670430 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
670376 CGCAACACGA
670386 AAATGACTATCGCAATGCGG
1 AAATGACTATCGCAATGCGG
*
670406 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAATGCGG
670425 AAATGA
1 AAATGA
670431 AAATCGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (20 bp):
AAATGACTATCGCAATGCGG
Found at i:670436 original size:19 final size:19
Alignment explanation
Indices: 670394--670509 Score: 83
Period size: 19 Copynumber: 6.6 Consensus size: 19
670384 GAAAATGACT
***
670394 ATCGCAATGCGGAAATGGCT
1 ATCGCAATGC-GAAATGAAA
670414 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
670433 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
670447 ATCGCAATGCGAAATG-AA
1 ATCGCAATGCGAAATGAAA
*
670465 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
* *
670479 AGCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
670498 ATCGCAATGCGA
1 ATCGCAATGCGA
670510 TTTGTGTTTC
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
14 19 0.25
15 1 0.01
16 6 0.08
17 2 0.03
18 11 0.15
19 26 0.35
20 10 0.13
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:670449 original size:14 final size:14
Alignment explanation
Indices: 670430--670487 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
670420 ATGCGAAATG
670430 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
670444 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
670460 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
*
670476 AAAAGCGCAACG
1 AAAATCGCAACG
670488 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.48, C:0.24, G:0.19, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:670472 original size:32 final size:33
Alignment explanation
Indices: 670414--670504 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
670404 GGAAATGGCT
670414 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
670447 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
* *
670479 AGCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
670505 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:670540 original size:14 final size:14
Alignment explanation
Indices: 670521--670578 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
670511 TTGTGTTTCG
670521 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
670535 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
670551 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
670567 CGTTGCGATTTT
1 CGTTGCGATTTT
670579 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:670555 original size:32 final size:33
Alignment explanation
Indices: 670516--670594 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
670506 GCGATTTGTG
670516 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
670548 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
670581 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
670595 AGCCATTTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 27 0.60
33 18 0.40
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:672716 original size:20 final size:20
Alignment explanation
Indices: 672686--672763 Score: 120
Period size: 20 Copynumber: 3.9 Consensus size: 20
672676 TCGCATTGCG
* *
672686 ATTTTCTCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAGCC
*
672706 ATTTTAGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
*
672726 ATTTTCGCGTTGCAATAGCC
1 ATTTTCGCGTTGCGATAGCC
672746 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
672764 TCAAATGAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:673838 original size:24 final size:24
Alignment explanation
Indices: 673811--673864 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
673801 GTATTCGAAA
* *
673811 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
673835 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
673859 TTTGAT
1 TTTGAT
673865 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:674056 original size:12 final size:12
Alignment explanation
Indices: 674039--674063 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
674029 ATATAATCCT
674039 GAAGAAGAAAAA
1 GAAGAAGAAAAA
674051 GAAGAAGAAAAA
1 GAAGAAGAAAAA
674063 G
1 G
674064 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:676377 original size:19 final size:19
Alignment explanation
Indices: 676355--676452 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
676345 GGAAATTACT
676355 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
676374 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
676388 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
676407 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
676421 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
676440 ATCGCAACGCGAA
1 ATCGCAATGCGAA
676453 TTTAATTTCG
Statistics
Matches: 62, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
14 19 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 31 0.50
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:676397 original size:33 final size:33
Alignment explanation
Indices: 676355--676448 Score: 179
Period size: 33 Copynumber: 2.8 Consensus size: 33
676345 GGAAATTACT
676355 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
676388 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
676421 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
676449 CGAATTTAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:676470 original size:19 final size:19
Alignment explanation
Indices: 676448--676489 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
676438 AAATCGCAAC
*
676448 GCGAATTTAATTTCGCGTT
1 GCGAATTTAATTTCGCATT
* *
676467 GCGATTTTCATTTCGCATT
1 GCGAATTTAATTTCGCATT
676486 GCGA
1 GCGA
676490 TAGTACTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.40
Consensus pattern (19 bp):
GCGAATTTAATTTCGCATT
Found at i:676616 original size:14 final size:14
Alignment explanation
Indices: 676597--676633 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
676587 CATCAATTAA
676597 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
676611 ACAAATCACCTTTT
1 ACAAATCAACTTTT
676625 ACAAATCAA
1 ACAAATCAA
676634 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:678015 original size:21 final size:20
Alignment explanation
Indices: 677991--678051 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
677981 GTGAATCGGG
*
677991 CTCTTGAATGGTGAGAGGGAC
1 CTCTTGAACGGTGAGAGGG-C
* * *
678012 CTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGAGAG-GGC
*
678033 CTCTTGAACGGTGGGAGGG
1 CTCTTGAACGGTGAGAGGG
678052 GACTCTCGAG
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.21, C:0.20, G:0.36, T:0.23
Consensus pattern (20 bp):
CTCTTGAACGGTGAGAGGGC
Found at i:678076 original size:42 final size:42
Alignment explanation
Indices: 678030--678113 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
678020 CGATGACAGT
* * *
678030 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * *
678072 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
678114 CGAGTCGGGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.21
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
Found at i:680144 original size:20 final size:19
Alignment explanation
Indices: 680113--680173 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
680103 TCTTTTGGTT
680113 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
680132 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
680153 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
680172 GA
1 GA
680174 GAATCGCAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.11
20 29 0.83
21 2 0.06
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:680195 original size:33 final size:33
Alignment explanation
Indices: 680138--680234 Score: 140
Period size: 33 Copynumber: 2.9 Consensus size: 33
680128 ACGAGATAAT
*
680138 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
680172 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
* **
680205 GACAATCGCAACGCGAAATGAAAATCGCAA
1 GAGAATCGCAACGCGAAATGACTATCGCAA
680235 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 43 0.75
34 14 0.25
ACGTcount: A:0.40, C:0.25, G:0.24, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:680900 original size:20 final size:20
Alignment explanation
Indices: 680815--680908 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
680805 CGCTATGTAA
*
680815 ATCGCATTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
680835 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * * ** * *
680855 ATCTCGTTGCGCTTTTTTATT
1 ATCGCATTGCG-ATAGTCAGT
680876 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
680896 ATCGCATTGCGAT
1 ATCGCATTGCGAT
680909 TTTCCCAATT
Statistics
Matches: 57, Mismatches: 16, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
20 45 0.79
21 12 0.21
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.34
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:680906 original size:41 final size:41
Alignment explanation
Indices: 680834--680911 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
680824 CGAAAGTCAG
* * * *
680834 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGCTTTTTTAT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
* *
680875 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTT
680912 CCCAATTCGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (41 bp):
TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
Found at i:688160 original size:21 final size:21
Alignment explanation
Indices: 688134--688289 Score: 126
Period size: 21 Copynumber: 7.5 Consensus size: 21
688124 GTTTCCAGAT
* *
688134 TCGCAACGCAAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* * *
688155 TCGCAACGCGAA-TATGTA-AA
1 TCGCAATGCGAACT-TGGACTA
* *
688175 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTGGACTA
*
688196 TCGCAATACGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
* * *
688217 TCGCAACGCGAA-TATGTA-AA
1 TCGCAATGCGAACT-TGGACTA
*
688237 TCGCAATGCGATAC-TCGACTA
1 TCGCAATGCGA-ACTTGGACTA
688258 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
688279 TCGCAATGCGA
1 TCGCAATGCGA
688290 TAGTCGAAGT
Statistics
Matches: 106, Mismatches: 20, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
20 31 0.29
21 75 0.71
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:688217 original size:62 final size:62
Alignment explanation
Indices: 688144--688289 Score: 265
Period size: 62 Copynumber: 2.4 Consensus size: 62
688134 TCGCAACGCA
*
688144 AACTTGGACTATCGCAACGCGAATATGTAAATCGCAATGCGATAGTCGACTATCGCAATACG
1 AACTTGGACTATCGCAACGCGAATATGTAAATCGCAATGCGATACTCGACTATCGCAATACG
*
688206 AACTTGGACTATCGCAACGCGAATATGTAAATCGCAATGCGATACTCGACTATCGCAATGCG
1 AACTTGGACTATCGCAACGCGAATATGTAAATCGCAATGCGATACTCGACTATCGCAATACG
*
688268 AACTTGGACTATCGCAATGCGA
1 AACTTGGACTATCGCAACGCGA
688290 TAGTCGAAGT
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 81 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (62 bp):
AACTTGGACTATCGCAACGCGAATATGTAAATCGCAATGCGATACTCGACTATCGCAATACG
Found at i:688303 original size:21 final size:20
Alignment explanation
Indices: 688279--688372 Score: 84
Period size: 21 Copynumber: 4.5 Consensus size: 20
688269 ACTTGGACTA
*
688279 TCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATAGTC-AAGT
*
688300 TCGCGTTGCGATAGTTCAAGT
1 TCGCATTGCGATAG-TCAAGT
* *
688321 TCGCATTACGAT-TTACATA-T
1 TCGCATTGCGATAGT-CA-AGT
688341 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTC-AAGT
*
688362 TCGCGTTGCGA
1 TCGCATTGCGA
688373 ATCGTTGTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
19 1 0.02
20 16 0.27
21 40 0.68
22 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (20 bp):
TCGCATTGCGATAGTCAAGT
Found at i:689049 original size:6 final size:6
Alignment explanation
Indices: 689040--689115 Score: 152
Period size: 6 Copynumber: 12.7 Consensus size: 6
689030 GTCCGTCTCA
689040 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
689088 GGTCGT GGTCGT GGTCGT GGTCGT GGTC
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTC
689116 ATACGTGTCT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:689240 original size:21 final size:21
Alignment explanation
Indices: 689191--689246 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
689181 CAATACCACC
*
689191 ACTATCGCAATGCGAATATGT
1 ACTATCGCAATGCGAATATGG
*
689212 A-AATCGCAATGCGAACT-TGG
1 ACTATCGCAATGCGAA-TATGG
*
689232 ACTATCGCATTGCGA
1 ACTATCGCAATGCGA
689247 TTTACATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (21 bp):
ACTATCGCAATGCGAATATGG
Found at i:689261 original size:20 final size:20
Alignment explanation
Indices: 689236--689390 Score: 151
Period size: 20 Copynumber: 7.6 Consensus size: 20
689226 ACTTGGACTA
689236 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
689256 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
689276 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
689296 TCGCATTGCGATAGT-CGA-AGT
1 TCGCATTGCGAT-TTAC-ATA-T
*
689317 TCGCGTTGCGATAGTT-CA-AGT
1 TCGCATTGCGAT--TTACATA-T
*
689338 TCGCATTGCGATAGT-CGACTA-
1 TCGCATTGCGAT-TTAC-A-TAT
*
689359 TCGCATTGTGATTTACATAT
1 TCGCATTGCGATTTACATAT
689379 TCGCATTGCGAT
1 TCGCATTGCGAT
689391 AGTCCAAGTT
Statistics
Matches: 116, Mismatches: 10, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
19 2 0.02
20 69 0.59
21 42 0.36
22 2 0.02
23 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:689325 original size:21 final size:21
Alignment explanation
Indices: 689295--689431 Score: 131
Period size: 21 Copynumber: 6.6 Consensus size: 21
689285 GATTTACATA
689295 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAG
*
689316 TTCGCGTTGCGATAGTTC-AAG
1 TTCGCATTGCGATAG-TCGAAG
*
689337 TTCGCATTGCGATAGTCG-AC
1 TTCGCATTGCGATAGTCGAAG
* *
689357 TATCGCATTGTGAT-TTAC-ATA-
1 T-TCGCATTGCGATAGT-CGA-AG
*
689378 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCGAAG
* *
689399 TTCACATTGCGATAGTCGAAA
1 TTCGCATTGCGATAGTCGAAG
*
689420 TTCGCGTTGCGA
1 TTCGCATTGCGA
689432 ATCTGGAAAC
Statistics
Matches: 95, Mismatches: 12, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
20 18 0.19
21 74 0.78
22 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.32
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCGAAG
Found at i:689376 original size:83 final size:83
Alignment explanation
Indices: 689276--689431 Score: 242
Period size: 83 Copynumber: 1.9 Consensus size: 83
689266 ATTTACATAT
* * * *
689276 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCGAAGTTCGCGTTGCGATAGTTC-AAGTTC
1 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCACATTGCGATAG-TCGAAATTC
689340 GCATTGCGATAGTCGACTA
65 GCATTGCGATAGTCGACTA
*
689359 TCGCATTGTGATTTACATATTCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCGAAATTCG
1 TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCGAAATTCG
*
689424 CGTTGCGA
66 CATTGCGA
689432 ATCTGGAAAC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
82 2 0.03
83 64 0.97
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (83 bp):
TCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTCACATTGCGATAGTCGAAATTCG
CATTGCGATAGTCGACTA
Found at i:696792 original size:21 final size:21
Alignment explanation
Indices: 696766--696818 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
696756 GTTTCTAGAT
696766 TCGCAACGCGAACATCGACCA
1 TCGCAACGCGAACATCGACCA
* *
696787 TCGCAACGCGAACTTCGACTA
1 TCGCAACGCGAACATCGACCA
*
696808 TCGCAATGCGA
1 TCGCAACGCGA
696819 TTTTCCAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.34, G:0.21, T:0.15
Consensus pattern (21 bp):
TCGCAACGCGAACATCGACCA
Found at i:696847 original size:21 final size:19
Alignment explanation
Indices: 696822--697074 Score: 182
Period size: 21 Copynumber: 12.3 Consensus size: 19
696812 AATGCGATTT
* *
696822 TCCAAATTCGTTGCGATTTAT
1 TCCAAGTTCGTTGCGA--TAG
*
696843 TCCAAATTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
696862 TCCAAGTTCGCGTTGCGATAG
1 TCCAAGTT--CGTTGCGATAG
*
696883 TCCAAGTTCATTGCGATAG
1 TCCAAGTTCGTTGCGATAG
* *
696902 TCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTT--CGTTGCGA--TAG
*
696925 TCCAAATTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
*
696944 TCCAAGTTCGCGTTGCGATTTAT
1 TCCAAGTT--CGTTGCGA--TAG
696967 TCCAAGTTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
** * *
696986 TCGGAGTTCGCGTTGCAATTTAT
1 TCCAAGTT--CGTTGCGA--TAG
697009 TCCAAGTTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
* * *
697028 TCGAAGTTCGCATTGCAATTTAT
1 TCCAAGTTCG--TTGCGA--TAG
*
697051 TCCAAATTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
697070 TCCAA
1 TCCAA
697075 AATCGCAACG
Statistics
Matches: 187, Mismatches: 27, Indels: 38
0.74 0.11 0.15
Matches are distributed among these distances:
19 61 0.33
21 90 0.48
23 36 0.19
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (19 bp):
TCCAAGTTCGTTGCGATAG
Found at i:696942 original size:42 final size:42
Alignment explanation
Indices: 696830--697071 Score: 371
Period size: 42 Copynumber: 5.8 Consensus size: 42
696820 TTTCCAAATT
*
696830 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCG
* * *
696872 CGTTGCGA--TAGTCCAAGTTCATTGCGATAGTCGAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCG
*
696912 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCG
* *
696954 CGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGGAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCG
* *
696996 CGTTGCAATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCG
* *
697038 CATTGCAATTTATTCCAAATTCGTTGCGATAGTC
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTC
697072 CAAAATCGCA
Statistics
Matches: 183, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 36 0.20
42 147 0.80
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.35
Consensus pattern (42 bp):
CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCG
Found at i:697193 original size:6 final size:6
Alignment explanation
Indices: 697184--697233 Score: 100
Period size: 6 Copynumber: 8.3 Consensus size: 6
697174 TTACTATTAT
697184 CACGAC CACGAC CACGAC CACGAC CACGAC CACGAC CACGAC CACGAC
1 CACGAC CACGAC CACGAC CACGAC CACGAC CACGAC CACGAC CACGAC
697232 CA
1 CA
697234 GAGACGAGAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.34, C:0.50, G:0.16, T:0.00
Consensus pattern (6 bp):
CACGAC
Found at i:697987 original size:21 final size:21
Alignment explanation
Indices: 697961--698094 Score: 82
Period size: 21 Copynumber: 6.4 Consensus size: 21
697951 ATTTTGGACT
697961 ATCGCAACGAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
* * *
697982 ATCGCAACGCGAACTTCGACT--
1 ATCGCAA--CGAATTTGGAATAA
* * *
698003 ATTGTAACGAATTTGTAATAA
1 ATCGCAACGAATTTGGAATAA
* *
698024 ATCGCAACGCGAACTTGGACT--
1 ATCGCAA--CGAATTTGGAATAA
* *
698045 ATCACAACAAATTTGGAATAA
1 ATCGCAACGAATTTGGAATAA
698066 ATCGCAACACGAATTTGG-A-AA
1 ATCGC-A-ACGAATTTGGAATAA
698087 ATCGCAAC
1 ATCGCAAC
698095 ACGAACTTGG
Statistics
Matches: 83, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
19 19 0.23
20 1 0.01
21 34 0.41
22 2 0.02
23 27 0.33
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (21 bp):
ATCGCAACGAATTTGGAATAA
Found at i:698016 original size:42 final size:42
Alignment explanation
Indices: 697957--698135 Score: 200
Period size: 42 Copynumber: 4.3 Consensus size: 42
697947 TGCGATTTTG
697957 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * * *
697999 GACTATTGTAACGAATTTGTAATAAATCGCAACGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * * * *
698041 GACTATCACAACAAATTTGGAATAAATCGCAACACGAATTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
** * * *
698083 GAAAATCGCAACACGAACTTGGACT--ATCGCAACGCGAACTTG
1 GACTATCGC-A-ACGAATTTGGAATAAATCGCAACGCGAACTTC
698125 GACTATCGCAA
1 GACTATCGCAA
698136 TGTGAATATG
Statistics
Matches: 114, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 101 0.89
43 1 0.01
44 10 0.09
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.22
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:698095 original size:21 final size:21
Alignment explanation
Indices: 698022--698135 Score: 97
Period size: 21 Copynumber: 5.4 Consensus size: 21
698012 AATTTGTAAT
*
698022 AAATCGCAACGCGAACTTGGA
1 AAATCGCAACACGAACTTGGA
** * *
698043 CTATCACAACA--AATTTGGAA
1 AAATCGCAACACGAACTTGG-A
*
698063 TAAATCGCAACACGAATTTGGA
1 -AAATCGCAACACGAACTTGGA
698085 AAATCGCAACACGAACTTGGA
1 AAATCGCAACACGAACTTGGA
** *
698106 CTATCGCAACGCGAACTTGGA
1 AAATCGCAACACGAACTTGGA
**
698127 CTATCGCAA
1 AAATCGCAA
698136 TGTGAATATG
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
19 6 0.08
20 1 0.01
21 62 0.81
22 1 0.01
23 7 0.09
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (21 bp):
AAATCGCAACACGAACTTGGA
Found at i:699690 original size:2 final size:2
Alignment explanation
Indices: 699683--699754 Score: 108
Period size: 2 Copynumber: 36.0 Consensus size: 2
699673 TTCTATCTAA
699683 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
699725 AT AT AT AT GT AT AT GT GT TT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
699755 TATTTAAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
AT
Found at i:706023 original size:30 final size:30
Alignment explanation
Indices: 705987--706062 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
705977 AAAACTGAAT
*
705987 TAAACGGGGACGGGAAAAAACCATTTATGC
1 TAAACGGGGACGGGAAAAAACCATTTATAC
* * ** *
706017 TAAACGGGGATGGGGAAAAACTGTTTATAT
1 TAAACGGGGACGGGAAAAAACCATTTATAC
*
706047 TAAATGGGGACGGGAA
1 TAAACGGGGACGGGAA
706063 CGGGTTTAGT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.38, C:0.11, G:0.32, T:0.20
Consensus pattern (30 bp):
TAAACGGGGACGGGAAAAAACCATTTATAC
Found at i:706144 original size:2 final size:2
Alignment explanation
Indices: 706137--706180 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
706127 TAAAAATAAT
706137 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
706178 TA T
1 TA T
706181 TAATAAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:706184 original size:6 final size:7
Alignment explanation
Indices: 706138--706185 Score: 53
Period size: 8 Copynumber: 6.4 Consensus size: 7
706128 AAAAATAATT
706138 ATATATA
1 ATATATA
706145 TATATATA
1 -ATATATA
706153 TATATATA
1 -ATATATA
706161 TATATATA
1 -ATATATA
706169 TATATATA
1 -ATATATA
706177 ATAT-TA
1 ATATATA
706183 ATA
1 ATA
706186 AATTTAATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 5 0.12
7 4 0.10
8 31 0.77
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
ATATATA
Found at i:708244 original size:17 final size:17
Alignment explanation
Indices: 708222--708256 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
708212 TTAATGAATG
* *
708222 AAATTATAATTATTAAA
1 AAATTACAAATATTAAA
708239 AAATTACAAATATTAAA
1 AAATTACAAATATTAAA
708256 A
1 A
708257 GTAAGTAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATTACAAATATTAAA
Found at i:709032 original size:3 final size:3
Alignment explanation
Indices: 709019--709052 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
709009 TAAAAGTTTA
709019 AAC AA- AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
709053 AACCCTATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:709241 original size:13 final size:14
Alignment explanation
Indices: 709223--709252 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
709213 AGTTGAACAA
709223 TCTTCATATGCA-G
1 TCTTCATATGCACG
709236 TCTTCATATGCACG
1 TCTTCATATGCACG
709250 TCT
1 TCT
709253 GTAATGGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (14 bp):
TCTTCATATGCACG
Found at i:732331 original size:25 final size:25
Alignment explanation
Indices: 732303--732350 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
732293 GAAAAAACTG
732303 TGTAACCAAATATTATT-TTAATAAA
1 TGTAACCAAATATT-TTCTTAATAAA
*
732328 TGTAACCAAGTATTTTCTTAATA
1 TGTAACCAAATATTTTCTTAATA
732351 GTTTATAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (25 bp):
TGTAACCAAATATTTTCTTAATAAA
Found at i:735859 original size:24 final size:24
Alignment explanation
Indices: 735832--735887 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
735822 TAGTACATGT
*
735832 CACATGTCTAAAATAATGATGTGA
1 CACATATCTAAAATAATGATGTGA
*
735856 CACATATCTAAAGTAATGATGTGA
1 CACATATCTAAAATAATGATGTGA
*
735880 CATATATC
1 CACATATC
735888 GTGTGTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (24 bp):
CACATATCTAAAATAATGATGTGA
Found at i:736013 original size:30 final size:29
Alignment explanation
Indices: 735929--736013 Score: 82
Period size: 30 Copynumber: 2.8 Consensus size: 29
735919 ATGTGCCAAA
* *
735929 ACATGTCACGTATCAAAAGTGATGACGTGAT
1 ACATGTCATGT-TCAAAAGTGAT-ACGTAAT
*
735960 ACATGCTACATGTT-AAAAGTGATATGTAAT
1 ACATG-T-CATGTTCAAAAGTGATACGTAAT
*
735990 ACATGTCATGTGTCAAAATTGATA
1 ACATGTCATGT-TCAAAAGTGATA
736014 ATGTGATAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
28 5 0.11
29 2 0.04
30 19 0.41
31 14 0.30
32 2 0.04
33 4 0.09
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (29 bp):
ACATGTCATGTTCAAAAGTGATACGTAAT
Found at i:738717 original size:22 final size:22
Alignment explanation
Indices: 738689--738732 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
738679 TTTAAGAAGA
*
738689 AAGACTAATCTTAGGTTTTGCT
1 AAGACTAATCTCAGGTTTTGCT
*
738711 AAGACTAATCTCATGTTTTGCT
1 AAGACTAATCTCAGGTTTTGCT
738733 GAAGTGAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (22 bp):
AAGACTAATCTCAGGTTTTGCT
Found at i:744059 original size:22 final size:22
Alignment explanation
Indices: 744018--744098 Score: 144
Period size: 22 Copynumber: 3.6 Consensus size: 22
744008 CTCGTATAAA
744018 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTG-CCCGTAGAAT
744041 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
744063 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
*
744085 TGCACCGTAGTGCC
1 TGCACCGAAGTGCC
744099 ATATAATGAT
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
22 45 0.79
23 12 0.21
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:744094 original size:13 final size:13
Alignment explanation
Indices: 744032--744094 Score: 52
Period size: 10 Copynumber: 5.5 Consensus size: 13
744022 CCGAAGTGCC
744032 CCGTAGAATTGCA
1 CCGTAGAATTGCA
*
744045 CC---GAAGTGC-
1 CCGTAGAATTGCA
744054 CCGTAGAATTGCA
1 CCGTAGAATTGCA
*
744067 CC---GAAGTGC-
1 CCGTAGAATTGCA
744076 CCGTAGAATTGCA
1 CCGTAGAATTGCA
744089 CCGTAG
1 CCGTAG
744095 TGCCATATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
9 4 0.11
10 12 0.32
12 12 0.32
13 10 0.26
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (13 bp):
CCGTAGAATTGCA
Found at i:745781 original size:21 final size:21
Alignment explanation
Indices: 745757--745801 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
745747 TCTTGTTCGT
* *
745757 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
745778 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
745799 TTG
1 TTG
745802 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:751456 original size:184 final size:184
Alignment explanation
Indices: 751142--751529 Score: 627
Period size: 184 Copynumber: 2.1 Consensus size: 184
751132 AATCGAAATT
* * * *
751142 AAATATTAAATATATTATATATAATATATGGGTTCAGCCCAAACTATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGGCTAAGCCCAAACCATTTAAAACCCAATTAATAA
*
751207 TTTAAAATCCAATAACTTTTAAACCTAGATCAATATTAATTAATTAAAAAAATTATATAAAATTT
66 TTTAAAATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
*
751272 TTATTTTATAATTATATATTATTTAAATTAATTATAAA-TTATTTTTTAATTAAA
131 TTATTTTATAATTATATATTATTTAAATTAATTATAAACTT-TTTTTGAATTAAA
751326 AAATATTAAATATATTATATATAACATATGGGCTAAGCCCAAACCATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGGCTAAGCCCAAACCATTTAAAACCCAATTAATAA
* * * * *
751391 TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTTATCTGAAATTT
66 TTTAAAATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
751456 TTATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAAA
131 TTATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAAA
* * *
751510 AAACATTTAAT-TTTTATATA
1 AAATATTAAATATATTATATA
751530 AATTAAAAAA
Statistics
Matches: 189, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
183 8 0.04
184 179 0.95
185 2 0.01
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.42
Consensus pattern (184 bp):
AAATATTAAATATATTATATATAACATATGGGCTAAGCCCAAACCATTTAAAACCCAATTAATAA
TTTAAAATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAATTT
TTATTTTATAATTATATATTATTTAAATTAATTATAAACTTTTTTTGAATTAAA
Found at i:753871 original size:17 final size:17
Alignment explanation
Indices: 753849--753882 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
753839 AACTATACAA
753849 ATATAAA-AAAATTAAAT
1 ATATAAATAAAA-TAAAT
753866 ATATAAATAAAATAAAT
1 ATATAAATAAAATAAAT
753883 TAAATTACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
ATATAAATAAAATAAAT
Found at i:753900 original size:21 final size:22
Alignment explanation
Indices: 753827--753906 Score: 74
Period size: 22 Copynumber: 3.5 Consensus size: 22
753817 TTTTTCAGAA
* *
753827 AAAAAAAATTTAAACTATACAAAT
1 AAAATAAA-TTAAA-TATATAAAT
*
753851 ATAAAAAAATTAAATATATAAAT
1 A-AAATAAATTAAATATATAAAT
753874 AAAATAAATTAAAT-TACTAAA-
1 AAAATAAATTAAATATA-TAAAT
*
753895 AAAATATATTAA
1 AAAATAAATTAA
753907 CTAGATTGAT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
21 13 0.25
22 16 0.31
23 9 0.18
24 6 0.12
25 7 0.14
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAATAAATTAAATATATAAAT
Found at i:754392 original size:15 final size:13
Alignment explanation
Indices: 754337--754393 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 13
754327 TAAACATAAA
754337 TTTAAATTTATAATT
1 TTTAAATTT-T-ATT
*
754352 TTTAAATGTTATT
1 TTTAAATTTTATT
754365 TTTATAATATTTATT
1 TTTA-AAT-TTTATT
754380 TAATTAAATTTTAT
1 T--TTAAATTTTAT
754394 AAAAATGTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
13 7 0.19
14 4 0.11
15 19 0.53
16 3 0.08
17 3 0.08
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TTTAAATTTTATT
Found at i:754599 original size:14 final size:14
Alignment explanation
Indices: 754580--754630 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
754570 TAGGGTTTCT
*
754580 ATTTAAAGTTTAGA
1 ATTTAAAATTTAGA
*
754594 ATTTAATATTTTAGA
1 ATTTAA-AATTTAGA
*
754609 TTTTAAAATTTA-A
1 ATTTAAAATTTAGA
*
754622 AGTTAAAAT
1 ATTTAAAAT
754631 AAATTATCTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 8 0.26
14 11 0.35
15 12 0.39
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (14 bp):
ATTTAAAATTTAGA
Found at i:755311 original size:25 final size:25
Alignment explanation
Indices: 755283--755338 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
755273 TCTATGTATC
*
755283 AAAAGATTTCTTGGGAAATACACAT
1 AAAAGATTGCTTGGGAAATACACAT
755308 AAAAGATTGCTTGGGAAATACACAT
1 AAAAGATTGCTTGGGAAATACACAT
755333 AAAAGA
1 AAAAGA
755339 AAATGGCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (25 bp):
AAAAGATTGCTTGGGAAATACACAT
Found at i:757372 original size:405 final size:405
Alignment explanation
Indices: 756497--757388 Score: 1432
Period size: 405 Copynumber: 2.2 Consensus size: 405
756487 CCAGGAGAGA
* * * *
756497 TTGATGGTGAAAGTGGTCGTGGTATGCTTGATGAAAGTAGATCGAAGGAAGGGCAGCGGAATGGA
1 TTGATGGTGAAAGTGATCGTGATATGCTTGATGAAAGTAGATCGAACGAAGGGCAGCAGAATGGA
* * * * * * * *
756562 GCTGGATTGTTGCGGATGAAATCTTTAGATCGCTATGAGAAGGATCGAAATACATCCAGATATAG
66 ACTGGACTCTTGCAGACGAAACCATTAGATCGCTACGAGAAGGATCGAAATACATCCAGATATAG
756627 TGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAA
131 TGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAA
756692 ATGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGA
196 ATGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGA
*
756757 TATAGTGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAA
261 TATAGTGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGAGAA
*
756822 GCTAAATGGAACTGGACTCTTGCAGACGGAACCATTCGATCGCTACGCGAAGGATCAAAATACAT
326 GCTAAATGGAACTGGACTCTTGCAGACGGAACCATTCGATCGCTACGAGAAGGATCAAAATACAT
*
756887 CCAGATATAGTGATG
391 CCAGAGATAGTGATG
* * * * * *
756902 GTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATC-ATACAAAGGGAAGCTA-AATG
1 TTGATGGTGAAAGTGATCGTGATATGCTTGATGAAAGTAGATCGA-ACGAAGGGCAGC-AGAATG
* *
756965 GAACTGGACTCTTGCAGACGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGATAT
64 GAACTGGACTCTTGCAGACGAAACCATTAGATCGCTACGAGAAGGATCGAAATACATCCAGATAT
757030 AGTGATGGTGATGATGAAAGTG-TGAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGC
129 AGTGATGGTGATGATGAAAGTGAT-AGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGC
757094 TAAATGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCC
193 TAAATGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCC
757159 AGATATAGTGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGA
258 AGATATAGTGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGA
* * *
757224 GAAGCTATATGGAACTGGACTCTTGCAGATGGAACCATTCGATCGCTACGAGAAGGATCGAAATA
323 GAAGCTAAATGGAACTGGACTCTTGCAGACGGAACCATTCGATCGCTACGAGAAGGATCAAAATA
757289 CATCCAGAGATAGTGATG
388 CATCCAGAGATAGTGATG
* * * * *
757307 TTGATGGTGAAAGTGATCGTGTTATACTTGATGAAACTAGACCGAATGAAGGGCAGCAGAATGGA
1 TTGATGGTGAAAGTGATCGTGATATGCTTGATGAAAGTAGATCGAACGAAGGGCAGCAGAATGGA
*
757372 ACCGGACTGC-TGCAGAC
66 ACTGGACT-CTTGCAGAC
757389 AGAATCTTTC
Statistics
Matches: 443, Mismatches: 38, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
404 3 0.01
405 438 0.99
406 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (405 bp):
TTGATGGTGAAAGTGATCGTGATATGCTTGATGAAAGTAGATCGAACGAAGGGCAGCAGAATGGA
ACTGGACTCTTGCAGACGAAACCATTAGATCGCTACGAGAAGGATCGAAATACATCCAGATATAG
TGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAA
ATGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGA
TATAGTGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGAGAA
GCTAAATGGAACTGGACTCTTGCAGACGGAACCATTCGATCGCTACGAGAAGGATCAAAATACAT
CCAGAGATAGTGATG
Found at i:757373 original size:270 final size:270
Alignment explanation
Indices: 756498--757347 Score: 1353
Period size: 270 Copynumber: 3.1 Consensus size: 270
756488 CAGGAGAGAT
* * * * ** * **
756498 TGATGGTGAAAGTGGTCGTGGTATGCTTGATGAAAGTAGATCGA-AGGAAGGGCAGCGGAATGGA
1 TGATGATGAAAGTGATAGTGATATGCTTGATGAAAGTAGATC-ATACAAAGGGAAGCTAAATGGA
* * * * * * * * * *
756562 GCTGGATTGTTGCGGATGAAATCTTTAGATCGCTATGAGAAGGATCGAAATACATCCAGATATAG
65 ACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGATATAG
756627 TGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAA
130 TGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAA
756692 ATGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGA
195 ATGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGA
756757 TATAGTGATGG
260 TATAGTGATGG
*
756768 TGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAA
1 TGATGATGAAAGTGATAGTGATATGCTTGATGAAAGTAGATCATACAAAGGGAAGCTAAATGGAA
* * *
756833 CTGGACTCTTGCAGACGGAACCATTCGATCGCTACGCGAAGGATCAAAATACATCCAGATATAGT
66 CTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGATATAGT
756898 GATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAA
131 GATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAA
*
756963 TGGAACTGGACTCTTGCAGACGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGAT
196 TGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGAT
757028 ATAGTGATGG
261 ATAGTGATGG
*
757038 TGATGATGAAAGTG-TGAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGA
1 TGATGATGAAAGTGAT-AGTGATATGCTTGATGAAAGTAGATCATACAAAGGGAAGCTAAATGGA
757102 ACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGATATAG
65 ACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGATATAG
* *
757167 TGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGAGAAGCTAT
130 TGATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAA
*
757232 ATGGAACTGGACTCTTGCAGATGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGA
195 ATGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGA
* *
757297 GATAGTGATGT
260 TATAGTGATGG
* * * * *
757308 TGATGGTGAAAGTGATCGTGTTATACTTGATGAAACTAGA
1 TGATGATGAAAGTGATAGTGATATGCTTGATGAAAGTAGA
757348 CCGAATGAAG
Statistics
Matches: 540, Mismatches: 37, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
269 2 0.00
270 537 0.99
271 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (270 bp):
TGATGATGAAAGTGATAGTGATATGCTTGATGAAAGTAGATCATACAAAGGGAAGCTAAATGGAA
CTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGATATAGT
GATGGTGATGATGAAAGTGATAGTGATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAA
TGGAACTGGACTCTTGCAGAAGGAACCATTCGATCGCTACGAGAAGGATCGAAATACATCCAGAT
ATAGTGATGG
Found at i:757387 original size:135 final size:135
Alignment explanation
Indices: 756589--757339 Score: 1360
Period size: 135 Copynumber: 5.6 Consensus size: 135
756579 GAAATCTTTA
*
756589 GATCGCTATGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
1 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
756654 TATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGAAGGAAC
66 TATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGAAGGAAC
756719 CATTC
131 CATTC
756724 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
1 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
*
756789 TATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGACGGAAC
66 TATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGAAGGAAC
756854 CATTC
131 CATTC
* *
756859 GATCGCTACGCGAAGGATCAAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
1 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
*
756924 TATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGACGGAAC
66 TATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGAAGGAAC
756989 CATTC
131 CATTC
756994 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTG-TGAGTG
1 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGAT-AGTG
757058 ATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGAAGGAA
65 ATATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGAAGGAA
757123 CCATTC
130 CCATTC
757129 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
1 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
* * *
757194 TATGCTTGATGGAAGTAGATCATACAAAGAGAAGCTATATGGAACTGGACTCTTGCAGATGGAAC
66 TATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGAAGGAAC
757259 CATTC
131 CATTC
* * * * *
757264 GATCGCTACGAGAAGGATCGAAATACATCCAGAGATAGTGATGTTGATGGTGAAAGTGATCGTGT
1 GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
*
757329 TATACTTGATG
66 TATGCTTGATG
757340 AAACTAGACC
Statistics
Matches: 598, Mismatches: 16, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
134 1 0.00
135 596 1.00
136 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.24
Consensus pattern (135 bp):
GATCGCTACGAGAAGGATCGAAATACATCCAGATATAGTGATGGTGATGATGAAAGTGATAGTGA
TATGCTTGATGGAAGTAGATCATACAAAGGGAAGCTAAATGGAACTGGACTCTTGCAGAAGGAAC
CATTC
Found at i:774899 original size:55 final size:55
Alignment explanation
Indices: 774827--774935 Score: 166
Period size: 55 Copynumber: 2.0 Consensus size: 55
774817 ATTTAATTAA
*
774827 GTTAAACGTATGTTTTATTGATTTATAA-TCAATTTTACATTTATTAATCATTTTG
1 GTTAAACGTATGTTTTATTGATTTATAATTC-ATTTTACATTGATTAATCATTTTG
* * *
774882 GTTAAACGTATTTTTTATTGGTTTATAATTCATTTTACATTGATTTATCATTTT
1 GTTAAACGTATGTTTTATTGATTTATAATTCATTTTACATTGATTAATCATTTT
774936 ACTTGAATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
55 47 0.96
56 2 0.04
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.55
Consensus pattern (55 bp):
GTTAAACGTATGTTTTATTGATTTATAATTCATTTTACATTGATTAATCATTTTG
Found at i:775651 original size:23 final size:23
Alignment explanation
Indices: 775624--775669 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
775614 GAAAGGGAGC
*
775624 TGGAAGA-AGGTGGAGGAGAAGGG
1 TGGAAGAGA-GTGGAGAAGAAGGG
775647 TGGAAGAGAGTGGAGAAGAAGGG
1 TGGAAGAGAGTGGAGAAGAAGGG
775670 AATGGTGGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.37, C:0.00, G:0.54, T:0.09
Consensus pattern (23 bp):
TGGAAGAGAGTGGAGAAGAAGGG
Found at i:776851 original size:32 final size:32
Alignment explanation
Indices: 776810--776885 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
776800 GTGATTATAG
776810 TATTA-AATTACGATTACAATCACAACTGCAA
1 TATTATAATTACGATTACAATCACAACTGCAA
* * *
776841 TATTATAATTATGATTACAGTCACAACTGCGA
1 TATTATAATTACGATTACAATCACAACTGCAA
*
776873 TGTTATAATTACG
1 TATTATAATTACG
776886 GACATTACGA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 5 0.13
32 34 0.87
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (32 bp):
TATTATAATTACGATTACAATCACAACTGCAA
Found at i:777684 original size:2 final size:2
Alignment explanation
Indices: 777677--777708 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
777667 ATTAATATTG
777677 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
777709 TTAAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:778116 original size:14 final size:14
Alignment explanation
Indices: 778097--778123 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
778087 TATATTAAAA
778097 TTTAAAATTTTTAT
1 TTTAAAATTTTTAT
778111 TTTAAAATTTTTA
1 TTTAAAATTTTTA
778124 GATCTATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTAAAATTTTTAT
Found at i:780301 original size:88 final size:88
Alignment explanation
Indices: 780192--780371 Score: 290
Period size: 88 Copynumber: 2.0 Consensus size: 88
780182 ATTTTTATTA
* *
780192 AAAACTAAAAAAAATATAAAGAAAAAACTGATGGTCGACAATCAATTTTAAAA-CTGATGTCATT
1 AAAACTAAAAAAAATACAAAGAAAAAACTGATGGTCGACAATCAATTTTAAAATC-GATGTCATG
* *
780256 GTCGACTAAATAAAATTAAAGAAC
65 GCCGACTAAATAAAATCAAAGAAC
* *
780280 AAAACTAAAAAAGATACAAAGAAAAAACTGATGGTCGACAATCAATTTTAAAATCGATGTCGTGG
1 AAAACTAAAAAAAATACAAAGAAAAAACTGATGGTCGACAATCAATTTTAAAATCGATGTCATGG
780345 CCGACTAAATAAAATCAAAGAAC
66 CCGACTAAATAAAATCAAAGAAC
780368 AAAA
1 AAAA
780372 TTTTATTCGG
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
88 84 0.99
89 1 0.01
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (88 bp):
AAAACTAAAAAAAATACAAAGAAAAAACTGATGGTCGACAATCAATTTTAAAATCGATGTCATGG
CCGACTAAATAAAATCAAAGAAC
Found at i:780802 original size:59 final size:59
Alignment explanation
Indices: 780718--780842 Score: 146
Period size: 59 Copynumber: 2.1 Consensus size: 59
780708 AATGGTCCAA
* * * * * *
780718 TAACTATAGGATATTGCTTTATTGAGT-CTTCGATTATTACAAGTTACAAAATGATCCTC
1 TAACTATAGGATATTACTTTATTGAGTCCATCAACTATTAAAAGTTA-AAAATGATCATC
*
780777 TAACTATAGGA-AGTTACTTTGTTGAGTCCATCAACTATTAAAAGTTAAAAATGATCATC
1 TAACTATAGGATA-TTACTTTATTGAGTCCATCAACTATTAAAAGTTAAAAATGATCATC
*
780836 TGACTAT
1 TAACTAT
780843 TCATTATATT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
58 1 0.02
59 40 0.71
60 15 0.27
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (59 bp):
TAACTATAGGATATTACTTTATTGAGTCCATCAACTATTAAAAGTTAAAAATGATCATC
Found at i:782257 original size:14 final size:14
Alignment explanation
Indices: 782238--782268 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
782228 TGGGGAGTAA
*
782238 TCCCTGTAAATAAT
1 TCCCTGCAAATAAT
782252 TCCCTGCAAATAAT
1 TCCCTGCAAATAAT
782266 TCC
1 TCC
782269 TTACATAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (14 bp):
TCCCTGCAAATAAT
Found at i:784353 original size:25 final size:25
Alignment explanation
Indices: 784298--784353 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
784288 GATATTCATT
* *
784298 TTTTTCTTTATTTTATTATATTATA
1 TTTTTATTTATTTTATTATATTAAA
* * *
784323 TATTTATTTATTTTCTTATTTTAAA
1 TTTTTATTTATTTTATTATATTAAA
784348 TTTTTA
1 TTTTTA
784354 ATAAATTTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTTTATTTATTTTATTATATTAAA
Found at i:785236 original size:25 final size:28
Alignment explanation
Indices: 785168--785237 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 28
785158 TTACTTAAAA
**
785168 TATTTTTGGTCAAAATAAATATTTAAATT
1 TATTTTTAATCAAAATAAATATTT-AATT
*
785197 TATTTTTAATTAAAATAAATATTT-ATT
1 TATTTTTAATCAAAATAAATATTTAATT
785224 TA-TTTT-ATCAAAAT
1 TATTTTTAATCAAAAT
785238 GTGTACTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 7 0.19
26 4 0.11
27 5 0.14
29 21 0.57
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (28 bp):
TATTTTTAATCAAAATAAATATTTAATT
Found at i:789141 original size:3 final size:3
Alignment explanation
Indices: 789133--789173 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
789123 TCATGTCAAT
789133 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
789174 TGTTTTGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:790080 original size:15 final size:15
Alignment explanation
Indices: 790068--790106 Score: 69
Period size: 15 Copynumber: 2.5 Consensus size: 15
790058 CCCATCTCAC
790068 TTCCACCACTCTCCA
1 TTCCACCACTCTCCA
790083 TTCCACCACTCTCCA
1 TTCCACCACTCTCCA
790098 TTCCCACCA
1 TT-CCACCA
790107 AACCCTGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.21, C:0.54, G:0.00, T:0.26
Consensus pattern (15 bp):
TTCCACCACTCTCCA
Found at i:798436 original size:33 final size:33
Alignment explanation
Indices: 798393--798457 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
798383 GTCTCTCCAG
*
798393 CTACCGAAGCAAAACAATCC-AGAAGAACAATAA
1 CTACCCAAGCAAAACAATCCTA-AAGAACAATAA
798426 CTACCCAAGCAAAACAATCCTAAAGAACAATA
1 CTACCCAAGCAAAACAATCCTAAAGAACAATA
798458 TCAACGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.54, C:0.26, G:0.09, T:0.11
Consensus pattern (33 bp):
CTACCCAAGCAAAACAATCCTAAAGAACAATAA
Found at i:814666 original size:29 final size:30
Alignment explanation
Indices: 814601--814657 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
814591 CAATTAAGTA
* *
814601 AAATTTAATTTTTAATAATAAAATAATTTT
1 AAATTAAACTTTTAATAATAAAATAATTTT
814631 AAATTAAACTTTTAA-AAT-AAATAATTT
1 AAATTAAACTTTTAATAATAAAATAATTT
814658 AAGATTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.36
29 3 0.12
30 13 0.52
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (30 bp):
AAATTAAACTTTTAATAATAAAATAATTTT
Found at i:815654 original size:28 final size:28
Alignment explanation
Indices: 815609--815664 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
815599 TGTTGAAAGT
815609 CGTCTGAATCATACAACGACTTCTAAAA
1 CGTCTGAATCATACAACGACTTCTAAAA
* *
815637 CGTCTGAATCACT-TAACGATTTCTAAAA
1 CGTCTGAATCA-TACAACGACTTCTAAAA
815665 AGCTACATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 24 0.96
29 1 0.04
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.29
Consensus pattern (28 bp):
CGTCTGAATCATACAACGACTTCTAAAA
Found at i:819215 original size:2 final size:2
Alignment explanation
Indices: 819208--819238 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
819198 AATTTTAAGA
*
819208 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
819239 AATAAGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:819257 original size:23 final size:23
Alignment explanation
Indices: 819222--819265 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
819212 ATATATATAT
*
819222 ATATATATATATTTATAAATAAG
1 ATATATATATATTTAGAAATAAG
* *
819245 ATATTTATTTATTTAGAAATA
1 ATATATATATATTTAGAAATA
819266 TCAGAAAATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (23 bp):
ATATATATATATTTAGAAATAAG
Found at i:819341 original size:18 final size:18
Alignment explanation
Indices: 819308--819348 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
819298 CCCATTTCTT
*
819308 AATATTAAAAAATAAATA
1 AATATTAAAAAATAAACA
**
819326 AATATTAAAATCTAAACA
1 AATATTAAAAAATAAACA
819344 AATAT
1 AATAT
819349 ATATATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (18 bp):
AATATTAAAAAATAAACA
Found at i:820701 original size:3 final size:3
Alignment explanation
Indices: 820695--820764 Score: 63
Period size: 3 Copynumber: 24.0 Consensus size: 3
820685 TTATATTTAT
* * * *
820695 TAA TAA TAA TAA AAA T-A TAA TAA TAA TTA TAA TAA T-A TTA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
820741 TTA TAA TAA TTA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
820765 AACAAGCAAA
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
2 4 0.08
3 48 0.92
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:820720 original size:20 final size:20
Alignment explanation
Indices: 820695--820764 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
820685 TTATATTTAT
820695 TAATAATAATAAAAATATAA
1 TAATAATAATAAAAATATAA
* * *
820715 TAATAATTATAATAATATTA
1 TAATAATAATAAAAATATAA
* * *
820735 TAACAATTATAATAATTATAA
1 TAATAATAATAA-AAATATAA
*
820756 TAAAAATAA
1 TAATAATAA
820765 AACAAGCAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
20 28 0.70
21 12 0.30
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (20 bp):
TAATAATAATAAAAATATAA
Found at i:820768 original size:29 final size:29
Alignment explanation
Indices: 820680--820769 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
820670 TGTAATATGT
* *
820680 AATAATTATATTTATTAATAATAATAAAA-
1 AATAATAATAATTA-TAATAATAATAAAAC
* *
820709 ATATAATAATAATTATAATAATATTATAAC
1 A-ATAATAATAATTATAATAATAATAAAAC
* *
820739 AATTATAATAATTATAATAAAAATAAAAC
1 AATAATAATAATTATAATAATAATAAAAC
820768 AA
1 AA
820770 GCAAAAAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
29 39 0.76
30 12 0.24
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (29 bp):
AATAATAATAATTATAATAATAATAAAAC
Found at i:821595 original size:466 final size:463
Alignment explanation
Indices: 820727--821654 Score: 1631
Period size: 466 Copynumber: 2.0 Consensus size: 463
820717 ATAATTATAA
820727 TAATATTATAACAATTATAATAATTATAATAAAAATAAAACAAGCAAAAAATTTAGTGTCTACAG
1 TAATATTATAACAATTATAATAATTATAATAAAAATAAAACAAGCAAAAAATTTAGTGTCTACAG
* *
820792 CTGCCCCTCTTTGTACATTCTTGTGTTAACAAGAATAGGGCAAAGACGAAAAGACAATAAATTTT
66 CTGCCCCTCTTTGTACATTCTTGTGTTAACAAGAATAGGGCAAAAACGAAAAGACAAAAAATTTT
820857 TGTTCAGTTGACTTCTCTTGATTAAGATGAAAATGTTGAACAAGTTCTTATTATGAACTCTTCCA
131 TGTTCAGTTGACTTCTCTTGATTAAGATGAAAATGTTGAACAAGTTCTTATTATGAACTCTTCCA
* * *
820922 TTTTTCCACTGGGGATGATAATCTATCTTCTTTTGTGATGTAATTTATCAAAAGATTTGAATAAG
196 TTTTTCCACTGGGGATGATAATCTATCTTCTTATGTGATGTAATTTATCAAAAAATTTGAACAAG
*
820987 TTCTTATTATTATGAACTTTTTCTTCATCTTCAAATGAGTTCTTCTCATTATGAACTCCTTCTGG
261 TTCTTATTATTATGAACTTCTTCTTCATCTTCAAATGAGTTCTTCTCATTATGAACTCCTTCTGG
*
821052 AAATATTGATCCTCAAAAGAGGGGTTGTTGATTCAGCTTCATATGTGATGAATTTAAGATAAGGT
326 AAATATTGATCCTCAAAAGAGGGGTTGTTGATTCAGCTTCATATGTGATGAATTTAAGACAAGGT
821117 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATATTCAAATGAGTTCTTCTCATTATGAACT
391 TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATATTCAAATGAGTTCTTCTCATTATGAACT
821182 TCCTCTGT
456 TCCTCTGT
** *
821190 TAATATTATAACAATTATAATAATTATAATAAAAATAAAACGGGCCAAAAATTTAGTGTCTACAG
1 TAATATTATAACAATTATAATAATTATAATAAAAATAAAACAAGCAAAAAATTTAGTGTCTACAG
* *
821255 TTGTCCCTCTTTGTACATTCTTGTGTTAACAAGAATAGGGCAAAAACGAAAAGACAAAAAATTTT
66 CTGCCCCTCTTTGTACATTCTTGTGTTAACAAGAATAGGGCAAAAACGAAAAGACAAAAAATTTT
821320 TGTTCAGTTGACTTCTCTTGATTAAGATGAAAATGTTGAACAAGTTCTTCTTATTATGAACTCTT
131 TGTTCAGTTGACTTCTCTTGATTAAGATGAAAATGTTGAACAAG---TTCTTATTATGAACTCTT
* *
821385 CCATTTTTCCACTGGGGATGATAATTTATCTTCTTATGTGATGTAATTTATTAAAAAATTTGAAC
193 CCATTTTTCCACTGGGGATGATAATCTATCTTCTTATGTGATGTAATTTATCAAAAAATTTGAAC
* * *
821450 AAGTTCTTCTTGTTATGAACTTCTTCTTCATCTTCAGATGAGTTCTTCTCATTATGAACTCCTTC
258 AAGTTCTTATTATTATGAACTTCTTCTTCATCTTCAAATGAGTTCTTCTCATTATGAACTCCTTC
* *
821515 TGGAAATGTTGATCCTTAAAAGAGGGGTTGTTGATTCAGCTTCATATGTGATGAATTTAAGACAA
323 TGGAAATATTGATCCTCAAAAGAGGGGTTGTTGATTCAGCTTCATATGTGATGAATTTAAGACAA
* * *
821580 GGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTATTCAGATGAGTTCTTCTCATTATGA
388 GGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATATTCAAATGAGTTCTTCTCATTATGA
821645 ACTTCCTCTG
453 ACTTCCTCTG
821655 AAAATGTTGA
Statistics
Matches: 440, Mismatches: 22, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
463 167 0.38
466 273 0.62
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (463 bp):
TAATATTATAACAATTATAATAATTATAATAAAAATAAAACAAGCAAAAAATTTAGTGTCTACAG
CTGCCCCTCTTTGTACATTCTTGTGTTAACAAGAATAGGGCAAAAACGAAAAGACAAAAAATTTT
TGTTCAGTTGACTTCTCTTGATTAAGATGAAAATGTTGAACAAGTTCTTATTATGAACTCTTCCA
TTTTTCCACTGGGGATGATAATCTATCTTCTTATGTGATGTAATTTATCAAAAAATTTGAACAAG
TTCTTATTATTATGAACTTCTTCTTCATCTTCAAATGAGTTCTTCTCATTATGAACTCCTTCTGG
AAATATTGATCCTCAAAAGAGGGGTTGTTGATTCAGCTTCATATGTGATGAATTTAAGACAAGGT
TGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATATTCAAATGAGTTCTTCTCATTATGAACT
TCCTCTGT
Found at i:821597 original size:138 final size:139
Alignment explanation
Indices: 821444--821802 Score: 485
Period size: 138 Copynumber: 2.6 Consensus size: 139
821434 ATTAAAAAAT
* *
821444 TTGAACAAGTTCTTCTTGTTATGAACTTCTTCTTCATCTTCAGATGAGTTCTTCTCATTATGAAC
1 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC
* * * * *
821509 TCCTTCTGGAAATGTTGATCCTTAAAAGAGG-GGTT-GTTGATTCAGCTTCATATGTGATGAATT
66 TCCTTCTGGAAATGTTGATCCTTAAAAGAGGTGCTTCGTTCATTCAACTCCATAGGTGATGAA-T
*
821572 TAAGAC-AAGG
130 CAAG-CTAAGG
* * *
821582 TTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTATTCAGATGAGTTCTTCTCATTATGAAC
1 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC
* * * *
821647 TTCC-TCTGAAAATGTTGATCCTTAAGAGAGGTTCTTCTTTCATTCAACTCCATAGGTGATGAAT
66 -TCCTTCTGGAAATGTTGATCCTTAAAAGAGGTGCTTCGTTCATTCAACTCCATAGGTGATGAAT
821711 CAAGCTAAGG
130 CAAGCTAAGG
* *
821721 TCGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAAC
1 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC
*
821786 T-TTATCTGGAAATGTTG
66 TCCT-TCTGGAAATGTTG
821803 GTGCTGATAT
Statistics
Matches: 193, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
138 87 0.45
139 85 0.44
140 21 0.11
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (139 bp):
TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC
TCCTTCTGGAAATGTTGATCCTTAAAAGAGGTGCTTCGTTCATTCAACTCCATAGGTGATGAATC
AAGCTAAGG
Found at i:821771 original size:139 final size:138
Alignment explanation
Indices: 821446--821802 Score: 486
Period size: 139 Copynumber: 2.6 Consensus size: 138
821436 TAAAAAATTT
* *
821446 GAACAAGTTCTTCTTGTTATGAACTTCTTCTTCATCTTCAGATGAGTTCTTCTCATTATGAAC-T
1 GAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTT
* * * * * *
821510 CCTTCTGGAAATGTTGATCCTTAAAAGAGGGGTTGTTGATTCAGCTTCATATGTGATGAATTTAA
66 CC-TCTGGAAATGTTGATCCTTAAAAGAGGGCTTGTTCATTCAACTCCATAGGTGATGAATTCAA
*
821575 GACAAGGTT
130 GACAAGGTC
* * *
821584 GAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTATTCAGATGAGTTCTTCTCATTATGAACTT
1 GAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTT
* * * *
821649 CCTCTGAAAATGTTGATCCTTAAGAGAGGTTCTTCTTTCATTCAACTCCATAGGTGATGAA-TCA
66 CCTCTGGAAATGTTGATCCTTAAAAGAGG-GCTT-GTTCATTCAACTCCATAGGTGATGAATTCA
821713 AG-CTAAGGTC
129 AGAC-AAGGTC
*
821723 GAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTT
1 GAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTT
**
821788 TATCTGGAAATGTTG
66 CCTCTGGAAATGTTG
821803 GTGCTGATAT
Statistics
Matches: 192, Mismatches: 23, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
138 84 0.44
139 87 0.45
140 21 0.11
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (138 bp):
GAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTT
CCTCTGGAAATGTTGATCCTTAAAAGAGGGCTTGTTCATTCAACTCCATAGGTGATGAATTCAAG
ACAAGGTC
Found at i:822089 original size:113 final size:112
Alignment explanation
Indices: 821832--822171 Score: 479
Period size: 113 Copynumber: 3.0 Consensus size: 112
821822 TGTGATAGAC
* * *
821832 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTGTTCC-TCTTCAGATAAGTTCT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCT
* * * *
821896 TCTCATTATGAACTTTCTCTGGAAAAGTTGATCTATCGAGTGATGAAT
66 TCTCATTATGAACTTAC-CTGGCAATGTTGATCCATCGAGTGATGAAT
* * *
821944 TTAAACAAAAGGTTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
1 TCAAGCAAAAGG-TTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTC
*
822009 TTCTCATTATGAACTATACCTGGCAATGTTGATCCATCAAGTGATGAAT
65 TTCTCATTATGAACT-TACCTGGCAATGTTGATCCATCGAGTGATGAAT
* *
822058 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTT-TCCTTCCTTCTTCAGGTGAGTTC
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTC
* *
822122 TTCTCATTATGAACTCTACCTGGC-ATGTTGATCCATTGAGTGATGGAT
65 TTCTCATTATGAACT-TACCTGGCAATGTTGATCCATCGAGTGATGAAT
822170 TC
1 TC
822172 GAATCTTTAC
Statistics
Matches: 204, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
112 33 0.16
113 101 0.50
114 68 0.33
115 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (112 bp):
TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCT
TCTCATTATGAACTTACCTGGCAATGTTGATCCATCGAGTGATGAAT
Found at i:826308 original size:72 final size:72
Alignment explanation
Indices: 826190--826324 Score: 198
Period size: 72 Copynumber: 1.9 Consensus size: 72
826180 TATAATATGT
* * *
826190 TAGCTAAATATTATCCATAAAGCCAGGGCGATTAACCAATTGCTTTAGGGGGACAACTGAAGCAT
1 TAGCTAAATATTATCCATAAAGCCAGGGCGATTAACCAATTACTTTAAGGGGACAACTCAAGCAT
826255 AACAAAC
66 AACAAAC
* * * * *
826262 TAGCTTAATATTATCCATAAAGTCGGGGCTATTAACCAATTACTTTAAGGGGATAACTCAAGC
1 TAGCTAAATATTATCCATAAAGCCAGGGCGATTAACCAATTACTTTAAGGGGACAACTCAAGC
826325 TTTATTGTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
72 55 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (72 bp):
TAGCTAAATATTATCCATAAAGCCAGGGCGATTAACCAATTACTTTAAGGGGACAACTCAAGCAT
AACAAAC
Found at i:827927 original size:21 final size:21
Alignment explanation
Indices: 827901--827945 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
827891 GATTTCTGGG
* *
827901 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
827922 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
827943 CAA
1 CAA
827946 ACGAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:829663 original size:23 final size:23
Alignment explanation
Indices: 829597--829655 Score: 102
Period size: 22 Copynumber: 2.6 Consensus size: 23
829587 ATCATTATAT
*
829597 GGCACTACGGTGCAATTCTAC-G
1 GGCACTTCGGTGCAATTCTACGG
829619 GGCACTTCGGTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTACGG
829642 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
829656 TTTATACGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
22 20 0.57
23 15 0.43
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGG
Found at i:832856 original size:21 final size:21
Alignment explanation
Indices: 832830--832874 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
832820 GATTTCTGGG
* *
832830 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
832851 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
832872 CAA
1 CAA
832875 ACAAACAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:833829 original size:2 final size:2
Alignment explanation
Indices: 833822--833848 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
833812 GAACATGTGA
833822 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
833849 GGTCTAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:834598 original size:23 final size:23
Alignment explanation
Indices: 834532--834590 Score: 102
Period size: 22 Copynumber: 2.6 Consensus size: 23
834522 ATCATTATAT
*
834532 GGCACTACGGTGCAATTCTAC-G
1 GGCACTTCGGTGCAATTCTACGG
834554 GGCACTTCGGTGCAATTCTACGG
1 GGCACTTCGGTGCAATTCTACGG
834577 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
834591 TTTATACGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
22 20 0.57
23 15 0.43
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGG
Found at i:837325 original size:28 final size:30
Alignment explanation
Indices: 837294--837357 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 30
837284 AATACTTAAA
837294 ATAAAAATATTAAT-AAAA-AATAA-TATAT
1 ATAAAAATATT-ATGAAAATAATAAGTATAT
837322 AT--AAATATTATGAAAATAATAAGTATAT
1 ATAAAAATATTATGAAAATAATAAGTATAT
837350 ATAAAAAT
1 ATAAAAAT
837358 TTTCAAAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
25 2 0.06
26 11 0.35
27 5 0.16
28 9 0.29
30 4 0.13
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (30 bp):
ATAAAAATATTATGAAAATAATAAGTATAT
Found at i:837986 original size:18 final size:18
Alignment explanation
Indices: 837953--837993 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
837943 CCCATTTCTT
*
837953 AATATTAAAAAATAAATA
1 AATATTAAAAAATAAACA
**
837971 AATATTAAAATTTAAACA
1 AATATTAAAAAATAAACA
837989 AATAT
1 AATAT
837994 ATATATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
AATATTAAAAAATAAACA
Found at i:839464 original size:12 final size:12
Alignment explanation
Indices: 839447--839480 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
839437 TTTATTAATA
839447 ATAATAAAAAAT
1 ATAATAAAAAAT
* *
839459 ATAATAATAATT
1 ATAATAAAAAAT
839471 ATAATAAAAA
1 ATAATAAAAA
839481 TAAAACGGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAATAAAAAAT
Found at i:848836 original size:17 final size:17
Alignment explanation
Indices: 848814--848850 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
848804 AATGTCACTT
848814 AACCAGTAAGA-CAATGA
1 AACCAGTAA-ATCAATGA
848831 AACCAGTAAATCAATGA
1 AACCAGTAAATCAATGA
848848 AAC
1 AAC
848851 TATCAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.54, C:0.19, G:0.14, T:0.14
Consensus pattern (17 bp):
AACCAGTAAATCAATGA
Found at i:860565 original size:60 final size:60
Alignment explanation
Indices: 860472--860596 Score: 166
Period size: 60 Copynumber: 2.1 Consensus size: 60
860462 CAAAGAACAC
* * *
860472 AAATGGTCCCCTCACTATAGGATATTATTTTGTTGAA-TCTTTCGACTATTAAAAGTTATA
1 AAATGGTCCCCTCACTATAGGATATTACTTTGTTGAATTC-CTCGACTACTAAAAGTTATA
*
860532 AAATGGTCCCC-CAACTATAGGA-AGTTACTTTGTTGAGTTCCTCGACTACTAAAAGTTATA
1 AAATGGTCCCCTC-ACTATAGGATA-TTACTTTGTTGAATTCCTCGACTACTAAAAGTTATA
860592 AAATG
1 AAATG
860597 ATCACCTAAC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
59 2 0.03
60 54 0.93
61 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (60 bp):
AAATGGTCCCCTCACTATAGGATATTACTTTGTTGAATTCCTCGACTACTAAAAGTTATA
Found at i:869893 original size:20 final size:20
Alignment explanation
Indices: 869868--869905 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
869858 TTTATTATTA
869868 TTTTACTTATATATATATGC
1 TTTTACTTATATATATATGC
* *
869888 TTTTACTTTTTTATATAT
1 TTTTACTTATATATATAT
869906 TTTACTCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTACTTATATATATATGC
Found at i:869910 original size:17 final size:17
Alignment explanation
Indices: 869855--869983 Score: 55
Period size: 18 Copynumber: 6.8 Consensus size: 17
869845 TGATTTTCTT
869855 TTTTTTATTATTATTTTAC
1 TTTTTTA-TA-TATTTTAC
* *
869874 TTATATATATATGCTTTTAC
1 TT-T-TTTATAT-ATTTTAC
869894 TTTTTTATATATTTTACTC
1 TTTTTTATATATTTTA--C
*
869913 ATTTATTTATCTATTTTTA-
1 -TTT-TTTATATA-TTTTAC
*
869932 TATTTATCATATATTTTA-
1 T-TTT-TTATATATTTTAC
*
869950 TGTTTTTATATTCTTTTAC
1 T-TTTTTATA-TATTTTAC
*
869969 TTGTTTTATTTATTT
1 TT-TTTTATATATTT
869984 ATTTGCATTA
Statistics
Matches: 85, Mismatches: 12, Indels: 27
0.69 0.10 0.22
Matches are distributed among these distances:
17 9 0.11
18 28 0.33
19 19 0.22
20 14 0.16
21 10 0.12
22 5 0.06
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTTTTATATATTTTAC
Found at i:869937 original size:16 final size:18
Alignment explanation
Indices: 869916--869950 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
869906 TTTACTCATT
869916 TATTTATC-TAT-TTTTA
1 TATTTATCATATATTTTA
869932 TATTTATCATATATTTTA
1 TATTTATCATATATTTTA
869950 T
1 T
869951 GTTTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 3 0.18
18 6 0.35
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTATCATATATTTTA
Found at i:873153 original size:16 final size:16
Alignment explanation
Indices: 873127--873210 Score: 59
Period size: 17 Copynumber: 5.1 Consensus size: 16
873117 AGATCCAATC
873127 AAGAACAAAAAAG-AA
1 AAGAACAAAAAAGCAA
873142 AAGAAGCAAAAAAGCAA
1 AAGAA-CAAAAAAGCAA
* * *
873159 AAAAAAAAACAAAGAAA
1 AAGAACAAA-AAAGCAA
873176 AAGAGA-AACAATAA-CAA
1 AAGA-ACAA-AA-AAGCAA
873193 AAGAA-AAAAAGAGCAA
1 AAGAACAAAAA-AGCAA
873209 AA
1 AA
873211 ATCAAAAAGA
Statistics
Matches: 56, Mismatches: 5, Indels: 15
0.74 0.07 0.20
Matches are distributed among these distances:
14 1 0.02
15 8 0.14
16 19 0.34
17 24 0.43
18 4 0.07
ACGTcount: A:0.77, C:0.08, G:0.13, T:0.01
Consensus pattern (16 bp):
AAGAACAAAAAAGCAA
Found at i:873176 original size:23 final size:23
Alignment explanation
Indices: 873150--873200 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
873140 AAAAGAAGCA
873150 AAAAAGCAAAAAAAAAAAC-AAAG
1 AAAAAG-AAAAAAAAAAACAAAAG
* * *
873173 AAAAAGAGAAACAATAACAAAAG
1 AAAAAGAAAAAAAAAAACAAAAG
873196 AAAAA
1 AAAAA
873201 AAGAGCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.80, C:0.08, G:0.10, T:0.02
Consensus pattern (23 bp):
AAAAAGAAAAAAAAAAACAAAAG
Found at i:873191 original size:22 final size:23
Alignment explanation
Indices: 873166--873234 Score: 63
Period size: 25 Copynumber: 2.9 Consensus size: 23
873156 CAAAAAAAAA
873166 AACAAAGAAAAAGAG-AAACAAT-
1 AACAAAGAAAAAGAGCAAA-AATC
873188 AACAAAAGAAAAAAAGAGCAAAAATC
1 AAC-AAAG--AAAAAGAGCAAAAATC
*
873214 AA-AAAGAAAAAGGGACAAAAA
1 AACAAAGAAAAAGAG-CAAAAA
873235 GCACATGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
22 10 0.25
23 10 0.25
24 4 0.10
25 11 0.28
26 5 0.12
ACGTcount: A:0.74, C:0.09, G:0.14, T:0.03
Consensus pattern (23 bp):
AACAAAGAAAAAGAGCAAAAATC
Found at i:873202 original size:8 final size:8
Alignment explanation
Indices: 873133--873204 Score: 58
Period size: 8 Copynumber: 9.0 Consensus size: 8
873123 AATCAAGAAC
873133 AAAAAAGA
1 AAAAAAGA
* *
873141 AAAGAAGC
1 AAAAAAGA
873149 AAAAAAGCA
1 AAAAAAG-A
873158 AAAAAA-A
1 AAAAAAGA
873165 AAACAAAGA
1 AAA-AAAGA
*
873174 AAAAGAG-
1 AAAAAAGA
* *
873181 AAACAATA
1 AAAAAAGA
*
873189 ACAAAAGA
1 AAAAAAGA
873197 AAAAAAGA
1 AAAAAAGA
873205 GCAAAAATCA
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
7 8 0.17
8 30 0.62
9 10 0.21
ACGTcount: A:0.79, C:0.07, G:0.12, T:0.01
Consensus pattern (8 bp):
AAAAAAGA
Found at i:873218 original size:24 final size:25
Alignment explanation
Indices: 873173--873224 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
873163 AAAAACAAAG
873173 AAAAAGAGAAACAATAACAAAAGAA
1 AAAAAGAGAAACAATAACAAAAGAA
*
873198 AAAAAGAGCAAA-AATCA-AAAAGAA
1 AAAAAGAG-AAACAATAACAAAAGAA
873222 AAA
1 AAA
873225 GGGACAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 10 0.40
25 12 0.48
26 3 0.12
ACGTcount: A:0.77, C:0.08, G:0.12, T:0.04
Consensus pattern (25 bp):
AAAAAGAGAAACAATAACAAAAGAA
Found at i:873232 original size:23 final size:24
Alignment explanation
Indices: 873160--873234 Score: 75
Period size: 23 Copynumber: 3.2 Consensus size: 24
873150 AAAAAGCAAA
*
873160 AAAAAAAAC-AAAGAAAAAGAGA-
1 AAAAATAACAAAAGAAAAAGAGAC
* *
873182 AACAATAACAAAAGAAAAAAAGAGC
1 AAAAATAACAAAAGAAAAAGAGA-C
* *
873207 AAAAATCA-AAAAGAAAAAGGGAC
1 AAAAATAACAAAAGAAAAAGAGAC
873230 AAAAA
1 AAAAA
873235 GCACATGCAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
22 7 0.16
23 18 0.42
24 12 0.28
25 6 0.14
ACGTcount: A:0.76, C:0.08, G:0.13, T:0.03
Consensus pattern (24 bp):
AAAAATAACAAAAGAAAAAGAGAC
Found at i:873886 original size:22 final size:22
Alignment explanation
Indices: 873861--873931 Score: 124
Period size: 22 Copynumber: 3.2 Consensus size: 22
873851 CCATCAATCT
*
873861 TTTGAGCATCCAATGTCAAACC
1 TTTGAGCATCAAATGTCAAACC
873883 TTTGAGCATCAAATGTCAAACC
1 TTTGAGCATCAAATGTCAAACC
*
873905 TTTGAGCATCAAATGCCAAACC
1 TTTGAGCATCAAATGTCAAACC
873927 TTTGA
1 TTTGA
873932 CCAAACACAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (22 bp):
TTTGAGCATCAAATGTCAAACC
Found at i:874370 original size:18 final size:18
Alignment explanation
Indices: 874347--874382 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
874337 TCAACATCAA
* *
874347 ATATTGGGGCATTTTTGG
1 ATATTGAGGCATCTTTGG
874365 ATATTGAGGCATCTTTGG
1 ATATTGAGGCATCTTTGG
874383 GGATTCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (18 bp):
ATATTGAGGCATCTTTGG
Found at i:874851 original size:35 final size:35
Alignment explanation
Indices: 874810--875143 Score: 184
Period size: 36 Copynumber: 9.5 Consensus size: 35
874800 ACTCATGATT
* * *
874810 GTTTTTCTTAAAACAATATTTGTCTCGCTTGAGACC
1 GTTTCTCTTAAAACAA-ATTTGTCTCTCTTGAGACA
* * * **
874846 GTTT-TCACTAGAAGAGTTTTGTCTCTCTTGAGACA
1 GTTTCTC-TTAAAACAAATTTGTCTCTCTTGAGACA
* * *
874881 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATA
1 GTTTCTCTTAAAACAAA-TTTGTCTCTCTTGAGACA
* * *
874917 GTTTCTCTTGAAACAAATTTCATCTATCTTGAGACA
1 GTTTCTCTTAAAACAAATTT-GTCTCTCTTGAGACA
* * * *
874953 GTTTCCCTTGAAATAAATTTTGTCTCTCTTGAGATA
1 GTTTCTCTTAAAACAAA-TTTGTCTCTCTTGAGACA
* * * *
874989 GTTT-TCCTTGAAACAAA-----ATAT-TTGA-ATA
1 GTTTCT-CTTAAAACAAATTTGTCTCTCTTGAGACA
* * *
875017 TGTTT-TCTTTGAAACAAATTCCGTCTCCCTTGAGACA
1 -GTTTCTC-TTAAAACAAATT-TGTCTCTCTTGAGACA
* ** *
875054 GTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACA
1 GTTTCTCTTAAAAC-AA-ATTTGTCTCTCTTGAGACA
* * *
875091 GTTTCTCTTGAAACAATTTTCGTCTATCTTGAGACA
1 GTTTCTCTTAAAACAAATTT-GTCTCTCTTGAGACA
* *
875127 GTTTCCCTTGAAACAAA
1 GTTTCTCTTAAAACAAA
875144 ACCTTTGAAT
Statistics
Matches: 236, Mismatches: 42, Indels: 40
0.74 0.13 0.13
Matches are distributed among these distances:
28 4 0.02
29 19 0.08
30 2 0.01
35 34 0.14
36 141 0.60
37 34 0.14
38 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (35 bp):
GTTTCTCTTAAAACAAATTTGTCTCTCTTGAGACA
Found at i:874905 original size:71 final size:72
Alignment explanation
Indices: 874820--875143 Score: 224
Period size: 72 Copynumber: 4.6 Consensus size: 72
874810 GTTTTTCTTA
* * * * ** *
874820 AAAC-AATATTTGTCTCGCTTGAGACCGTTTTCACTAG-AA-GAGTTTTGTCTCTCTTGAGACAG
1 AAACAAAT-TTTGTCTCTCTTGAGACAG-TTTCACTAGAAACAAATTTCATCTATCTTGAGACAG
874882 TTTCCCTTG
64 TTTCCCTTG
* * *
874891 AAACAAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACAAATTTCATCTATCTTGAGACAGTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCACTAGAAACAAATTTCATCTATCTTGAGACAGTT
874956 TCCCTTG
66 TCCCTTG
* * * *
874963 AAATAAATTTTGTCTCTCTTGAGATAGTTTTC-CTTGAAACAAA----A--TAT-TTGA-ATATG
1 AAACAAATTTTGTCTCTCTTGAGACAG-TTTCACTAGAAACAAATTTCATCTATCTTGAGACA-G
* *
875019 TTTTCTTTG
64 TTTCCCTTG
** * ** * * * ** *
875028 AAACAAATTCCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCACTAGAAAC-AAATTTCATCTATCTTGAGACAGT
*
875093 TTCTCTTG
65 TTCCCTTG
* * *
875101 AAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAA
1 AAACAAATTTT-GTCTCTCTTGAGACAGTTTCACTAGAAACAAA
875144 ACCTTTGAAT
Statistics
Matches: 201, Mismatches: 36, Indels: 31
0.75 0.13 0.12
Matches are distributed among these distances:
64 6 0.03
65 40 0.20
66 5 0.02
68 1 0.00
70 7 0.03
71 22 0.11
72 75 0.37
73 43 0.21
74 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (72 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCACTAGAAACAAATTTCATCTATCTTGAGACAGTT
TCCCTTG
Found at i:874963 original size:72 final size:71
Alignment explanation
Indices: 874871--875143 Score: 276
Period size: 72 Copynumber: 3.9 Consensus size: 71
874861 GTTTTGTCTC
*
874871 TCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACAAATT
1 TCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATT
874936 TCATCTA
66 T-ATCTA
* *
874943 TCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAGATAGTTT-TCCTTGAAACAAA-
1 TCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCT-CTTGAAACAAAT
875006 --A--TA
65 TTATCTA
* * * ** * * *
875009 T-TTGA-ATATGTTTTCTTTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAG
1 TCTTGAGACA-GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AA-
* * *
875072 TTTTGTCTC
63 ATTTATCTA
* * *
875081 TCTTGAGACAGTTTCTCTTGAAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAA
1 TCTTGAGACAGTTTCCCTTGAAACAAATTTT-GTCTCTCTTGAGACAGTTTCTCTTGAAACAAA
875144 ACCTTTGAAT
Statistics
Matches: 162, Mismatches: 26, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
64 2 0.01
65 43 0.27
66 6 0.04
68 1 0.01
71 1 0.01
72 68 0.42
73 39 0.24
74 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (71 bp):
TCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATT
TATCTA
Found at i:875138 original size:138 final size:137
Alignment explanation
Indices: 874882--875206 Score: 400
Period size: 138 Copynumber: 2.4 Consensus size: 137
874872 CTTGAGACAG
* *
874882 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACAAATTTCATCTATCTT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCATCTATCTT
* * * *
874947 GAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAGATAGTTTTCCTTGAAACAAAATATTT
66 GAGACAGTTTCCCTTGAAATAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACATTT
*
875012 GAATATG
131 GAATATA
* * ** * * * ** *
875019 TTTTCTTTGAAACAAATTCCGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AAATTTCATCTATCT
* * *
875084 TGAGACAGTTTCTCTTGAAA-CAATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACCT
65 TGAGACAGTTTCCCTTGAAATAAATTTT-GTCTATCTTGAGACAGTTTCCCTTGAAACAAAACAT
*
875148 TTGAATTTA
129 TTGAATATA
* * * *
875157 TTTCCCCTAAAACAAATTTTATCTCCCTTGAGACAGTTACTCTTGAAACA
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
875207 CAAAATCTTC
Statistics
Matches: 155, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
137 48 0.31
138 107 0.69
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (137 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAATTTCATCTATCTT
GAGACAGTTTCCCTTGAAATAAATTTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAAACATTT
GAATATA
Found at i:875236 original size:67 final size:68
Alignment explanation
Indices: 875118--875274 Score: 203
Period size: 68 Copynumber: 2.4 Consensus size: 68
875108 TTTCGTCTAT
* **
875118 CTTGAGACAGTTTCCCTTG-AA-ACAAAACCTTTGAATTTATTTCCCCTAAAACA-AATTTTATC
1 CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACATAATTTTATC
875180 TCC
66 TCC
* * * * *
875183 CTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCTTAAAACATAATTTTGTT
1 CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACATAATTTTATC
875248 TCC
66 TCC
* *
875251 CTTGAGACCGTTTCTCATGAAACA
1 CTTGAGACAGTTTCTCTTGAAACA
875275 ACATATATCT
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
65 17 0.22
66 2 0.03
67 28 0.36
68 31 0.40
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (68 bp):
CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACATAATTTTATC
TCC
Found at i:876103 original size:105 final size:105
Alignment explanation
Indices: 875918--876854 Score: 1497
Period size: 105 Copynumber: 9.0 Consensus size: 105
875908 GCACTCGAGG
* * * * *
875918 CAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCTCAATTTCAG
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTCAATTTCAG
875983 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
65 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
876024 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
* *
876089 GCCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
876129 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
* * *
876194 GCCAATTTCAACTTTACAATGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
876234 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
876299 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
876339 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
*
876404 GCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
876444 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAATAACAACTTCCCAATCTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
876509 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
876549 CAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTATCAACAACAACTTCCCAATCTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
876614 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
876654 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
** * *
876714 TTCAATTTCAACTTCATAACGAAGGATATTGGACTCGAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * * * ** *
876754 CAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAG
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTCAATTTCAG
* *
876819 AGCCAATTTCAACTTCACGACGGAGGATATTGGACT
65 AGCCAATTTCAACTTCACAACGAAGGATATTGGACT
876855 TGGAACAATG
Statistics
Matches: 783, Mismatches: 42, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
100 81 0.10
101 3 0.00
102 3 0.00
103 4 0.01
104 3 0.00
105 614 0.78
106 75 0.10
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
Found at i:877446 original size:34 final size:36
Alignment explanation
Indices: 877402--877503 Score: 163
Period size: 34 Copynumber: 2.9 Consensus size: 36
877392 TTTCGTCATA
*
877402 CTAGGATTCAAACTCCTAAAAATATGATAGAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
*
877437 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
877472 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
877504 GTTCTACTAT
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
34 29 0.48
35 3 0.05
37 29 0.48
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
Found at i:877527 original size:37 final size:37
Alignment explanation
Indices: 877400--877537 Score: 156
Period size: 37 Copynumber: 3.8 Consensus size: 37
877390 TTTTTCGTCA
* *
877400 TACTAGGATTCAAACTCCTAAAAATATGATAGAATT-
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTC
*
877436 T--TAGGATTCAAACTCCTAAAAATAGGATAAAATTT
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTC
* * *
877471 TGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTTC
1 TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTC
** * * *
877508 TACTATTATTTAAATTCCTAAAGATAGGAT
1 TACTAGGATTCAAACTCCTAAAAATAGGAT
877538 CCACAAGCAC
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
34 31 0.35
35 1 0.01
36 1 0.01
37 55 0.62
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (37 bp):
TACTAGGATTCAAACTCCTAAAAATAGGATAAAATTC
Done.