genome.fa.s7756.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007756.1 Hibiscus syriacus cultivar Beakdansim tig00110022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227904

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9791--9830	20	2.0	20	90	5	62	0	10	10	80	0.92
9804--9867	8	8.0	8	80	13	78	0	6	10	82	0.82
9791--9867	23	3.3	22	81	12	82	0	7	11	80	0.90
9804--9867	33	1.9	33	87	6	94	0	6	10	82	0.82
9804--9865	15	3.9	16	83	12	83	0	6	9	83	0.79
13231--13260	13	2.4	13	94	5	53	26	30	0	43	1.55
26595--26646	19	2.6	21	84	6	72	46	7	11	34	1.69
29769--29840	34	2.2	32	85	11	94	5	16	4	73	1.18
30556--30607	19	2.6	21	90	6	81	46	7	13	32	1.72
32632--32674	20	2.2	20	87	4	61	34	9	6	48	1.62
37147--37193	13	3.2	16	80	17	57	17	19	0	63	1.30
37168--37196	13	2.3	13	94	5	51	13	17	0	68	1.20
39148--39174	9	3.0	9	100	0	54	0	11	0	88	0.50
46431--46460	14	2.1	14	100	0	60	26	20	16	36	1.93
50487--50536	15	3.5	14	81	10	57	62	0	26	12	1.30
53213--53255	12	3.6	12	82	17	54	81	2	9	6	0.95
53213--53255	13	3.6	11	81	9	50	81	2	9	6	0.95
53295--53334	21	1.9	21	85	10	55	75	5	12	7	1.18
55296--55364	33	2.1	33	83	5	86	31	1	36	30	1.67
59118--59221	33	3.1	33	82	9	95	30	36	1	30	1.69
59619--59664	13	3.4	14	76	14	51	78	2	17	2	0.96
59617--59674	26	2.2	27	75	9	66	72	5	18	3	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63125--63228	33	3.1	33	82	9	95	30	36	1	30	1.69
70752--70928	36	4.9	36	90	0	255	28	34	4	32	1.78
76452--76555	33	3.1	33	82	9	95	30	36	1	30	1.69
86243--86311	33	2.1	33	83	5	86	31	1	36	30	1.67
88779--88882	33	3.1	33	82	9	95	30	36	1	30	1.69
90983--91086	33	3.1	33	82	9	95	30	36	1	30	1.69
93187--93290	33	3.1	33	82	9	95	30	36	1	30	1.69
95689--95736	20	2.4	20	82	6	53	14	25	0	60	1.34
96361--96412	19	2.6	21	84	6	72	46	7	11	34	1.69
98822--98872	19	2.6	20	90	3	77	43	5	15	35	1.71
102225--102287	6	10.2	6	74	19	58	3	15	3	77	1.02
102225--102257	11	3.0	11	90	0	57	0	15	0	84	0.61
102209--102293	37	2.3	37	82	10	102	4	15	3	76	1.09
103015--103064	19	2.5	20	87	3	66	46	6	16	32	1.71
106395--106476	18	4.6	18	70	10	60	4	14	3	76	1.09
106410--106441	10	3.0	11	90	9	57	0	15	0	84	0.63
107196--107246	19	2.6	20	90	3	77	43	5	15	35	1.71
110580--110626	21	2.2	21	85	7	60	4	12	2	80	0.94
110595--110626	10	3.0	11	90	9	57	0	15	0	84	0.63
110601--110661	28	2.3	25	72	8	59	4	14	3	77	1.07
111383--111433	19	2.6	20	90	3	77	43	5	15	35	1.71
114771--114817	21	2.2	21	85	7	60	4	12	2	80	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114786--114817	10	3.0	11	90	9	57	0	15	0	84	0.63
115574--115624	19	2.6	20	90	3	77	43	5	15	35	1.71
118973--119030	6	9.2	6	75	17	55	3	15	3	77	1.04
118958--119037	32	2.4	35	81	12	105	5	13	5	76	1.12
123139--123196	6	9.2	6	75	17	55	3	15	3	77	1.04
123124--123202	32	2.3	35	81	12	103	5	13	3	77	1.08
127287--127351	28	2.3	28	83	2	76	6	10	4	78	1.07
132110--132171	1	62.0	1	78	0	52	0	4	8	87	0.68
132110--132170	8	7.9	8	85	7	81	0	4	8	86	0.69
132099--132139	19	2.3	17	87	8	55	0	7	9	82	0.83
132099--132162	31	2.1	29	82	5	74	0	7	9	82	0.83
132111--132169	15	3.9	15	84	6	75	0	5	8	86	0.70
132110--132162	23	2.3	23	87	6	72	0	5	7	86	0.69
132745--132777	16	2.1	16	100	0	66	33	30	6	30	1.82
133824--133874	19	2.6	20	90	3	77	43	5	15	35	1.71
137196--137247	19	2.6	21	84	6	72	46	7	11	34	1.69
140405--140484	35	2.2	37	88	4	119	31	36	3	28	1.75
144358--144382	13	1.9	13	100	0	50	32	40	4	24	1.73
167283--167340	24	2.5	22	77	22	57	6	15	3	74	1.17
167296--167352	13	4.1	14	75	20	57	3	15	1	78	0.96
167300--167352	19	2.8	19	80	13	65	3	15	1	79	0.96
168444--168488	23	2.0	23	90	0	72	60	15	13	11	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171700--171751	19	2.6	21	90	6	81	44	5	11	38	1.65
175702--175806	36	2.9	36	91	1	167	29	4	36	29	1.78
176134--176198	31	2.1	31	100	0	130	41	6	20	32	1.77
177627--177695	33	2.1	33	83	5	86	31	1	36	30	1.67
182095--182163	33	2.1	33	83	5	86	31	1	36	30	1.67
184043--184551	248	2.1	248	99	0	1002	32	14	8	44	1.75
186093--186139	19	2.5	19	82	3	60	51	8	27	12	1.69
186164--186202	19	2.1	19	90	4	62	58	15	15	10	1.62
188050--188558	248	2.1	248	99	0	1002	32	14	8	44	1.75
190915--190946	16	2.0	16	100	0	64	31	18	6	43	1.75
192355--192439	21	4.4	19	76	15	68	76	2	20	1	0.96
192348--192446	17	6.0	17	73	20	70	75	3	19	2	1.03
192389--192446	5	10.8	5	85	14	80	77	0	22	0	0.77
192355--192446	49	2.0	43	84	16	114	76	2	20	1	0.96
192350--192443	28	3.3	27	77	20	93	76	2	19	2	0.99
194529--194560	16	2.0	16	100	0	64	31	18	6	43	1.75
195965--195999	18	1.9	18	94	0	61	37	42	8	11	1.72
205169--205212	21	2.0	21	87	12	63	15	22	0	61	1.34
209861--209886	13	2.0	13	100	0	52	92	7	0	0	0.39

Tables:   1

The End!