Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007757.1 Hibiscus syriacus cultivar Beakdansim tig00110023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203134

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5371--5874
247
2.1
245
97
2
951
32
14
8
44
1.75
8230--8261
16
2.0
16
100
0
64
31
18
6
43
1.75
9674--9766
11
8.5
11
76
11
84
75
2
21
1
0.97
9686--9770
19
4.4
19
81
12
77
74
1
23
1
0.96
9674--9763
5
18.6
5
76
15
91
75
2
21
1
0.97
9703--9766
21
3.1
21
93
4
105
76
0
23
0
0.79
9674--9763
16
6.2
15
79
12
91
75
2
21
1
0.97
11862--11893
16
2.0
16
100
0
64
31
18
6
43
1.75
13303--13337
18
1.9
18
94
0
61
37
42
8
11
1.72
22081--22117
19
1.9
19
88
0
56
40
10
8
40
1.70
22552--22595
21
2.0
21
87
12
63
15
22
0
61
1.34
26872--26913
22
1.9
22
90
9
68
14
11
4
69
1.34
27271--27295
12
2.1
12
100
0
50
92
8
0
0
0.40
31525--31566
22
1.9
22
85
9
59
14
14
4
66
1.40
70709--70762
20
2.6
21
76
2
56
0
12
12
74
1.08
70716--70751
18
1.9
18
88
5
54
0
11
11
77
0.99
70735--70764
12
2.5
12
100
0
60
0
13
6
80
0.91
78136--78174
20
2.0
20
90
5
62
30
12
10
46
1.75
79162--79212
20
2.6
20
90
3
77
35
15
5
43
1.71
81378--81474
36
2.7
36
100
0
194
29
3
38
28
1.72
83159--83199
14
2.8
14
92
7
64
80
9
9
0
0.91
83152--83221
22
3.2
21
78
13
70
78
11
10
0
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83151--83203
24
2.3
22
87
6
70
84
7
7
0
0.76
83175--83214
21
1.9
21
89
0
62
80
10
10
0
0.92
83151--83214
24
2.9
21
83
6
65
81
9
9
0
0.88
100007--100049
6
7.2
6
84
10
61
0
16
2
81
0.79
100007--100049
19
2.4
19
84
7
63
0
16
2
81
0.79
100841--100891
19
2.6
20
87
3
68
45
5
15
33
1.71
105817--105879
8
8.0
8
79
10
76
82
11
6
0
0.83
105819--105878
7
7.9
7
77
22
59
83
10
6
0
0.81
105819--105878
15
3.8
16
89
8
79
83
10
6
0
0.81
105817--105878
32
1.9
32
87
6
90
82
11
6
0
0.84
105853--105890
20
1.9
20
88
0
58
78
10
10
0
0.95
110947--110997
19
2.6
20
87
3
68
45
5
15
33
1.71
115297--115354
15
3.6
16
77
11
57
65
0
17
17
1.27
115297--115354
16
3.6
16
79
9
57
65
0
17
17
1.27
116965--116994
11
2.7
11
94
0
51
13
20
26
40
1.89
118984--119041
29
2.0
29
100
0
116
20
17
10
51
1.74
120917--120953
19
1.9
19
88
0
56
43
10
5
40
1.63
132679--132782
33
3.1
33
82
9
95
30
36
1
30
1.69
138356--138459
33
3.1
33
82
9
95
30
36
1
30
1.69
138756--138831
36
2.1
35
92
2
125
28
5
38
27
1.78
142321--142374
20
2.8
19
80
5
63
3
14
3
77
1.04
142339--142391
27
2.0
27
85
7
72
1
13
5
79
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142742--142810
33
2.1
33
83
5
86
31
1
36
30
1.67
146482--146550
33
2.1
33
83
5
86
31
1
36
30
1.67
148263--148320
13
4.7
13
70
12
50
31
1
39
27
1.67
148216--148325
35
3.1
35
86
3
141
32
3
34
29
1.75
151036--151139
33
3.1
33
82
9
95
30
36
1
30
1.69
155504--155607
33
3.1
33
82
9
95
30
36
1
30
1.69
165478--165507
14
2.1
15
93
6
53
0
13
0
86
0.57
165531--165575
19
2.4
19
80
0
54
4
13
2
80
0.97
166362--166402
20
2.1
20
86
4
57
46
7
9
36
1.65
169038--169067
13
2.4
13
94
5
53
26
30
0
43
1.55
174772--174806
18
1.9
18
100
0
70
45
11
5
37
1.64
188795--188829
11
3.2
11
87
0
52
88
0
8
2
0.61
195723--195761
20
1.9
21
84
5
53
33
0
38
28
1.57
198220--198248
14
2.0
15
93
6
51
41
13
6
37
1.72
199050--199101
21
2.6
19
84
6
68
34
13
5
46
1.67

Tables:   1

The End!